AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0591060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0591060 MtrunA17_Chr4g0008871 79.167 96 15 1 1 91 1 96 1.57e-49 158
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 20 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTAACTTATTTGGATTAA+AGG 0.134555 4_2:+15201158 None:intergenic
TTGCCAAAAGCTAACTTATT+TGG 0.143563 4_2:+15201150 None:intergenic
AAATTTACAACAACCGAAAA+AGG 0.234734 4_2:+15201737 None:intergenic
AATCCAAATAAGTTAGCTTT+TGG 0.283724 4_2:-15201153 Msa0591060:CDS
CAAGGAGTTCAGTTTCTTGC+CGG 0.285437 4_2:-15201229 Msa0591060:CDS
CTTTCTCTTTGTTTCATCAA+TGG 0.304765 4_2:-15202522 Msa0591060:five_prime_UTR
TCAGAATAAGAATCCTTATC+TGG 0.310991 4_2:-15201783 Msa0591060:intron
GGATGTTGTTCCTTTGAATA+AGG 0.311669 4_2:-15199266 Msa0591060:CDS
CCTTTGGTACTTTGTTGATC+TGG 0.330932 4_2:+15199564 None:intergenic
GTTCAGTTTCTTGCCGGGTT+CGG 0.410478 4_2:-15201223 Msa0591060:CDS
TGCAACTTGAGGCATTGATT+AGG 0.431017 4_2:+15201093 None:intergenic
ATCTTCTCATTTGCAACTTG+AGG 0.480992 4_2:+15201082 None:intergenic
AAGGAGTTCAGTTTCTTGCC+GGG 0.510954 4_2:-15201228 Msa0591060:CDS
CTGAACATAAACACCAGATA+AGG 0.511267 4_2:+15201770 None:intergenic
GAGAAACCTTGTAACGGAAG+AGG 0.516416 4_2:+15202438 None:intergenic
ATAACAGTTGATGACGATGA+AGG 0.530217 4_2:-15199639 Msa0591060:intron
GGGACTTTCTTCTACTCTCA+AGG 0.531322 4_2:-15201247 Msa0591060:CDS
AAGCTATTGATGACCGAACC+CGG 0.564308 4_2:+15201210 None:intergenic
CCAGATCAACAAAGTACCAA+AGG 0.603229 4_2:-15199564 Msa0591060:intron
AATTTGGAGAAACCTTGTAA+CGG 0.658112 4_2:+15202432 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATTTAAATATAAA+TGG + chr4_2:15202409-15202428 None:intergenic 0.0%
!! ATTCATATATAACAATAATT+TGG + chr4_2:15199567-15199586 None:intergenic 10.0%
!! ATTATTGTTATATATGAATA+TGG - chr4_2:15199568-15199587 Msa0591060:CDS 10.0%
!! TTATTGTTATATATGAATAT+GGG - chr4_2:15199569-15199588 Msa0591060:CDS 10.0%
!! AAATAAGAATCAATTATATT+TGG + chr4_2:15199966-15199985 None:intergenic 10.0%
!!! TATTTTATTAAATTAAGTGT+AGG - chr4_2:15200951-15200970 Msa0591060:intron 10.0%
!!! ATTTTATTAAATTAAGTGTA+GGG - chr4_2:15201133-15201152 Msa0591060:CDS 10.0%
!!! TTTTTTTTTTACATAAATTC+AGG + chr4_2:15201178-15201197 None:intergenic 10.0%
!!! TAGATAAATTTAACTTTTTT+TGG - chr4_2:15201275-15201294 Msa0591060:intron 10.0%
!!! ATTGATAGTTTTTTTTTTTT+TGG - chr4_2:15202488-15202507 Msa0591060:five_prime_UTR 10.0%
!!! TGCAATTTTTAATATTTGTT+GGG - chr4_2:15199430-15199449 Msa0591060:intron 15.0%
!!! AATTCTCTTTTAAGTTTTAA+GGG - chr4_2:15200221-15200240 Msa0591060:intron 15.0%
!! AACACTTATAAAATATGTTA+TGG + chr4_2:15201060-15201079 None:intergenic 15.0%
!!! ATAAATTTAACTTTTTTTGG+TGG - chr4_2:15201278-15201297 Msa0591060:intron 15.0%
!! TGAATATATAATATGTTTAG+AGG + chr4_2:15201479-15201498 None:intergenic 15.0%
!! TTAATTATTGTTAGCTAATT+GGG + chr4_2:15201653-15201672 None:intergenic 15.0%
!! ATTAATTATTGTTAGCTAAT+TGG + chr4_2:15201654-15201673 None:intergenic 15.0%
!!! AAAAAGAGATAAAGTATTAA+TGG + chr4_2:15202297-15202316 None:intergenic 15.0%
!! AAATTGCAGAAAAAAGAATT+TGG + chr4_2:15199418-15199437 None:intergenic 20.0%
!!! CTGCAATTTTTAATATTTGT+TGG - chr4_2:15199429-15199448 Msa0591060:intron 20.0%
!! CAATAATTTGGAAAAGTAAA+AGG + chr4_2:15199555-15199574 None:intergenic 20.0%
!!! ATTAAGTTGTTTATTCAAAC+AGG - chr4_2:15199796-15199815 Msa0591060:intron 20.0%
!!! TTAAGTTGTTTATTCAAACA+GGG - chr4_2:15199797-15199816 Msa0591060:intron 20.0%
!!! GAATTCTCTTTTAAGTTTTA+AGG - chr4_2:15200220-15200239 Msa0591060:intron 20.0%
!!! TTTGATTTAACTACTTGAAA+TGG - chr4_2:15200325-15200344 Msa0591060:intron 20.0%
!! TACATAGAATTTCAATTGAA+TGG - chr4_2:15200393-15200412 Msa0591060:intron 20.0%
!!! AATTTTGTGTTTTTTCATGA+AGG - chr4_2:15200563-15200582 Msa0591060:intron 20.0%
!!! ATTTTGTGTTTTTTCATGAA+GGG - chr4_2:15200564-15200583 Msa0591060:intron 20.0%
!! TAACAATAATTAATTGTCGT+TGG - chr4_2:15201660-15201679 Msa0591060:intron 20.0%
!! AACAATAATTAATTGTCGTT+GGG - chr4_2:15201661-15201680 Msa0591060:intron 20.0%
!! AAATCACATCTAATATATCA+AGG - chr4_2:15201752-15201771 Msa0591060:five_prime_UTR 20.0%
!!! TTTTTATTTCTTGTGTTACT+AGG - chr4_2:15201979-15201998 Msa0591060:intron 20.0%
!! CAAAAAATTGCATATGTAAT+TGG + chr4_2:15202050-15202069 None:intergenic 20.0%
!! AAACTAAATAATGTCAACAT+TGG - chr4_2:15202086-15202105 Msa0591060:intron 20.0%
!!! TGGTAATTTAGAATTAGATT+AGG - chr4_2:15202508-15202527 Msa0591060:five_prime_UTR 20.0%
!!! TGTTGATTTTGTTTACAAAG+TGG + chr4_2:15199338-15199357 None:intergenic 25.0%
!! TATTCTTCAATTTTGTTCCT+AGG - chr4_2:15199494-15199513 Msa0591060:intron 25.0%
! TAGGTATAAAACTCTCAAAA+GGG - chr4_2:15199513-15199532 Msa0591060:intron 25.0%
!! GCAATTTTCATAAGCTATAT+TGG + chr4_2:15199667-15199686 None:intergenic 25.0%
! CAGCTTATAACATTACAAAA+GGG + chr4_2:15199773-15199792 None:intergenic 25.0%
! AAATTTACAACAACCGAAAA+AGG + chr4_2:15200097-15200116 None:intergenic 25.0%
!! TGAATTAGCATTTTCAACTA+TGG - chr4_2:15200117-15200136 Msa0591060:intron 25.0%
!!! TAAGTGTAATTCTGAAACAA+GGG + chr4_2:15200180-15200199 None:intergenic 25.0%
!!! ATAAGTGTAATTCTGAAACA+AGG + chr4_2:15200181-15200200 None:intergenic 25.0%
! ATCTATCGAATTCAGAATTT+CGG - chr4_2:15200289-15200308 Msa0591060:intron 25.0%
! AACTACTTGAAATGGAAATT+TGG - chr4_2:15200333-15200352 Msa0591060:intron 25.0%
! TAGAATTTCAATTGAATGGT+TGG - chr4_2:15200397-15200416 Msa0591060:intron 25.0%
! CTTCAGTGAAATTCATAAAA+AGG + chr4_2:15200434-15200453 None:intergenic 25.0%
!!! CGATATGTTTTTCTTTTTCA+AGG - chr4_2:15200491-15200510 Msa0591060:intron 25.0%
!! AATTTAAAAATTTGCTCACG+TGG - chr4_2:15200528-15200547 Msa0591060:intron 25.0%
! AGCTAACTTATTTGGATTAA+AGG + chr4_2:15200676-15200695 None:intergenic 25.0%
!!! AATCCAAATAAGTTAGCTTT+TGG - chr4_2:15200678-15200697 Msa0591060:intron 25.0%
! AGTACCAATAAGAATCAAAA+GGG + chr4_2:15200798-15200817 None:intergenic 25.0%
! TAGTACCAATAAGAATCAAA+AGG + chr4_2:15200799-15200818 None:intergenic 25.0%
!!! TTCTTATTGGTACTACTTTT+TGG - chr4_2:15200804-15200823 Msa0591060:intron 25.0%
! ATCAAGACTATAGAAAGAAA+TGG + chr4_2:15200877-15200896 None:intergenic 25.0%
! ATAGTTAGTACAGAAAACTT+AGG + chr4_2:15200934-15200953 None:intergenic 25.0%
! TCAGGCTATAAAATATGTTA+TGG + chr4_2:15201160-15201179 None:intergenic 25.0%
!!! AATTTAACTTTTTTTGGTGG+TGG - chr4_2:15201281-15201300 Msa0591060:intron 25.0%
! TATAATATGTTTAGAGGCTA+AGG + chr4_2:15201473-15201492 None:intergenic 25.0%
! ACAATAATTAATTGTCGTTG+GGG - chr4_2:15201662-15201681 Msa0591060:intron 25.0%
!!! GAAGAAGAGATTTTTTTTGA+AGG + chr4_2:15201948-15201967 None:intergenic 25.0%
!! ATTTTATCAGGAACATATCA+CGG - chr4_2:15202010-15202029 Msa0591060:intron 25.0%
! AAGTATTAATGGTATACCTT+TGG + chr4_2:15202286-15202305 None:intergenic 25.0%
! AAACGTATAAACCTGAAATT+AGG + chr4_2:15202538-15202557 None:intergenic 25.0%
!!! AGGTTTATACGTTTTTGAAA+AGG - chr4_2:15202544-15202563 Msa0591060:five_prime_UTR 25.0%
TGAACAAAAAGCAAACTATG+TGG - chr4_2:15199264-15199283 Msa0591060:CDS 30.0%
GAACAAAAAGCAAACTATGT+GGG - chr4_2:15199265-15199284 Msa0591060:CDS 30.0%
! CTTTCTCTTTGTTTCATCAA+TGG - chr4_2:15199309-15199328 Msa0591060:intron 30.0%
AATTTGGAGAAACCTTGTAA+CGG + chr4_2:15199402-15199421 None:intergenic 30.0%
!! CTTTTGAGAGTTTTATACCT+AGG + chr4_2:15199514-15199533 None:intergenic 30.0%
CTAGGTATAAAACTCTCAAA+AGG - chr4_2:15199512-15199531 Msa0591060:intron 30.0%
! GAATATGGGTTTGTTTGAAT+TGG - chr4_2:15199583-15199602 Msa0591060:CDS 30.0%
GCAGCTTATAACATTACAAA+AGG + chr4_2:15199774-15199793 None:intergenic 30.0%
TGATCCTACTCAATCAATAT+TGG + chr4_2:15199823-15199842 None:intergenic 30.0%
TCAGAATAAGAATCCTTATC+TGG - chr4_2:15200048-15200067 Msa0591060:intron 30.0%
TTTCTGCAAAATTATCGCTT+AGG - chr4_2:15200244-15200263 Msa0591060:intron 30.0%
TCTATCGAATTCAGAATTTC+GGG - chr4_2:15200290-15200309 Msa0591060:intron 30.0%
CTTGAAATGGAAATTTGGAA+TGG - chr4_2:15200338-15200357 Msa0591060:intron 30.0%
GTAAAAAAAAATCCAACTCC+CGG + chr4_2:15200376-15200395 None:intergenic 30.0%
TTGCCAAAAGCTAACTTATT+TGG + chr4_2:15200684-15200703 None:intergenic 30.0%
!!! TTTGGCAAAAGTTTTGAAAG+AGG - chr4_2:15200696-15200715 Msa0591060:intron 30.0%
GACCTATTATATTTGCATCT+AGG - chr4_2:15200906-15200925 Msa0591060:intron 30.0%
AGCCTAGATGCAAATATAAT+AGG + chr4_2:15200911-15200930 None:intergenic 30.0%
! TTATAAGTGTCGTCAAATAG+CGG - chr4_2:15200977-15200996 Msa0591060:intron 30.0%
! TTATAAGTGTCGTCAAATAG+CGG - chr4_2:15200977-15200996 Msa0591060:intron 30.0%
CCAAAAAAAGTCAATATGCA+AGG + chr4_2:15201325-15201344 None:intergenic 30.0%
!!! CCTTGCATATTGACTTTTTT+TGG - chr4_2:15201322-15201341 Msa0591060:intron 30.0%
!!! TGCATATTGACTTTTTTTGG+TGG - chr4_2:15201325-15201344 Msa0591060:intron 30.0%
!!! ATATTGACTTTTTTTGGTGG+TGG - chr4_2:15201328-15201347 Msa0591060:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr4_2:15201388-15201407 None:intergenic 30.0%
!!! ATGGCTAAATTTTAGGGTTA+GGG + chr4_2:15201792-15201811 None:intergenic 30.0%
! AGAGAGATGGCTAAATTTTA+GGG + chr4_2:15201798-15201817 None:intergenic 30.0%
! AAGAGAGATGGCTAAATTTT+AGG + chr4_2:15201799-15201818 None:intergenic 30.0%
ATTCTGAGTAATAAGAGAGA+TGG + chr4_2:15201811-15201830 None:intergenic 30.0%
! TAGGTATTCCTCATTTTATC+AGG - chr4_2:15201998-15202017 Msa0591060:intron 30.0%
GATATGTTCCTGATAAAATG+AGG + chr4_2:15202009-15202028 None:intergenic 30.0%
!! AAAAAGCGCAGTGCAAATTT+TGG + chr4_2:15199366-15199385 None:intergenic 35.0%
CTGAACATAAACACCAGATA+AGG + chr4_2:15200064-15200083 None:intergenic 35.0%
AAGAAGTCTCACTTCATGAA+TGG - chr4_2:15200451-15200470 Msa0591060:intron 35.0%
TCATGAATGGTTGAGGAATA+AGG - chr4_2:15200464-15200483 Msa0591060:intron 35.0%
ATCTTCTCATTTGCAACTTG+AGG + chr4_2:15200752-15200771 None:intergenic 35.0%
!! CGAACCCTTTTGATTCTTAT+TGG - chr4_2:15200791-15200810 Msa0591060:intron 35.0%
!!! TAACTTTTTTTGGTGGTGGT+CGG - chr4_2:15201285-15201304 Msa0591060:intron 35.0%
AAAAGTCAATATGCAAGGTC+CGG + chr4_2:15201320-15201339 None:intergenic 35.0%
ATGCAAGGTCAATATGCAAA+AGG + chr4_2:15201373-15201392 None:intergenic 35.0%
!! GAGATATTTGGGACATTTTG+AGG + chr4_2:15201542-15201561 None:intergenic 35.0%
CTATTGTTCGTTACTTGTGT+CGG - chr4_2:15201575-15201594 Msa0591060:intron 35.0%
TTGTTAGCTAATTGGGAATG+AGG + chr4_2:15201646-15201665 None:intergenic 35.0%
! GTGTGGGAGAACAATTTTAT+AGG - chr4_2:15201704-15201723 Msa0591060:exon 35.0%
ACATCTAATATATCAAGGCC+CGG - chr4_2:15201757-15201776 Msa0591060:five_prime_UTR 35.0%
!!! TGGCTAAATTTTAGGGTTAG+GGG + chr4_2:15201791-15201810 None:intergenic 35.0%
!!! GATGGCTAAATTTTAGGGTT+AGG + chr4_2:15201793-15201812 None:intergenic 35.0%
!! TTTTGAAGGATCGTGAAGAA+GGG + chr4_2:15201934-15201953 None:intergenic 35.0%
!! TTTTTGAAGGATCGTGAAGA+AGG + chr4_2:15201935-15201954 None:intergenic 35.0%
!! ATAACAGTTGATGACGATGA+AGG - chr4_2:15202192-15202211 Msa0591060:intron 35.0%
GGATGTTGTTCCTTTGAATA+AGG - chr4_2:15202565-15202584 Msa0591060:five_prime_UTR 35.0%
! GATTTTCCTCTTCCGTTACA+AGG - chr4_2:15199387-15199406 Msa0591060:intron 40.0%
! AGGGCCAATATTGATTGAGT+AGG - chr4_2:15199816-15199835 Msa0591060:intron 40.0%
GTACACAGCAATGCAATTTC+AGG - chr4_2:15199988-15200007 Msa0591060:intron 40.0%
! AGCAATGCAATTTCAGGTGA+AGG - chr4_2:15199994-15200013 Msa0591060:intron 40.0%
GGAATGGTTTATAACTCCTC+CGG - chr4_2:15200354-15200373 Msa0591060:intron 40.0%
GAATGGTTTATAACTCCTCC+GGG - chr4_2:15200355-15200374 Msa0591060:intron 40.0%
AAAAAAAATCCAACTCCCGG+AGG + chr4_2:15200373-15200392 None:intergenic 40.0%
TCTCACTTCATGAATGGTTG+AGG - chr4_2:15200457-15200476 Msa0591060:intron 40.0%
! AAATTTGCTCACGTGGTTCA+TGG - chr4_2:15200535-15200554 Msa0591060:intron 40.0%
!! TGCAACTTGAGGCATTGATT+AGG + chr4_2:15200741-15200760 None:intergenic 40.0%
AATCAAAAGGGTTCGAGCAA+AGG + chr4_2:15200786-15200805 None:intergenic 40.0%
!!! AACTTTTTTTGGTGGTGGTC+GGG - chr4_2:15201286-15201305 Msa0591060:intron 40.0%
AAAGTCAATATGCAAGGTCC+GGG + chr4_2:15201319-15201338 None:intergenic 40.0%
AGGTCAATATGCAAAAGGTC+CGG + chr4_2:15201368-15201387 None:intergenic 40.0%
! TGAGCTTAACTCAGTTGGTA+TGG + chr4_2:15201410-15201429 None:intergenic 40.0%
TACCAACTGAGTTAAGCTCA+CGG - chr4_2:15201410-15201429 Msa0591060:intron 40.0%
AATGTCCCAAATATCTCCCA+CGG - chr4_2:15201545-15201564 Msa0591060:intron 40.0%
GAACAATAGTTAACTGCCGT+GGG + chr4_2:15201564-15201583 None:intergenic 40.0%
! ATCGTTCGCTACTTGTTGAA+CGG - chr4_2:15201610-15201629 Msa0591060:intron 40.0%
GGGATATTTGAGTCATTTCG+AGG - chr4_2:15201682-15201701 Msa0591060:intron 40.0%
ATTTGAGTCATTTCGAGGTG+TGG - chr4_2:15201687-15201706 Msa0591060:CDS 40.0%
TTTGAGTCATTTCGAGGTGT+GGG - chr4_2:15201688-15201707 Msa0591060:CDS 40.0%
CATCTAATATATCAAGGCCC+GGG - chr4_2:15201758-15201777 Msa0591060:five_prime_UTR 40.0%
!!! ATTTTAGGGTTAGGGGCTAT+GGG + chr4_2:15201784-15201803 None:intergenic 40.0%
!!! AATTTTAGGGTTAGGGGCTA+TGG + chr4_2:15201785-15201804 None:intergenic 40.0%
AGTGACTATGTGTCCAATTG+TGG - chr4_2:15202144-15202163 Msa0591060:intron 40.0%
GTGACTATGTGTCCAATTGT+GGG - chr4_2:15202145-15202164 Msa0591060:intron 40.0%
! GAAACTGACTTACCCACAAT+TGG + chr4_2:15202160-15202179 None:intergenic 40.0%
CCTTTGGTACTTTGTTGATC+TGG + chr4_2:15202270-15202289 None:intergenic 40.0%
! CCAGATCAACAAAGTACCAA+AGG - chr4_2:15202267-15202286 Msa0591060:intron 40.0%
GATTAGGCTTGCCTAATTTC+AGG - chr4_2:15202524-15202543 Msa0591060:five_prime_UTR 40.0%
! GAGAAACCTTGTAACGGAAG+AGG + chr4_2:15199396-15199415 None:intergenic 45.0%
TTTATAACTCCTCCGGGAGT+TGG - chr4_2:15200361-15200380 Msa0591060:intron 45.0%
GGGACTTTCTTCTACTCTCA+AGG - chr4_2:15200584-15200603 Msa0591060:intron 45.0%
CAAGGAGTTCAGTTTCTTGC+CGG - chr4_2:15200602-15200621 Msa0591060:intron 45.0%
AAGGAGTTCAGTTTCTTGCC+GGG - chr4_2:15200603-15200622 Msa0591060:intron 45.0%
! AAGCTATTGATGACCGAACC+CGG + chr4_2:15200624-15200643 None:intergenic 45.0%
!!! ACTTTTTTTGGTGGTGGTCG+GGG - chr4_2:15201287-15201306 Msa0591060:intron 45.0%
!!! TGACTTTTTTTGGTGGTGGC+CGG - chr4_2:15201332-15201351 Msa0591060:intron 45.0%
GTCAATATGCAAAAGGTCCG+GGG + chr4_2:15201366-15201385 None:intergenic 45.0%
GGTCAATATGCAAAAGGTCC+GGG + chr4_2:15201367-15201386 None:intergenic 45.0%
ACCAACTGAGTTAAGCTCAC+GGG - chr4_2:15201411-15201430 Msa0591060:intron 45.0%
AACTGCCGTGGGAGATATTT+GGG + chr4_2:15201553-15201572 None:intergenic 45.0%
TAACTGCCGTGGGAGATATT+TGG + chr4_2:15201554-15201573 None:intergenic 45.0%
CGAACAATAGTTAACTGCCG+TGG + chr4_2:15201565-15201584 None:intergenic 45.0%
!! TAATTTAATAAAATATGTTA+TGG + chr4_2:15201003-15201022 None:intergenic 5.0%
!! AATTATGAAAATAATTTATA+TGG + chr4_2:15202367-15202386 None:intergenic 5.0%
! CAGCTGATGCGAGCCTTTTT+CGG - chr4_2:15200081-15200100 Msa0591060:intron 50.0%
GTTCAGTTTCTTGCCGGGTT+CGG - chr4_2:15200608-15200627 Msa0591060:intron 50.0%
!!! GACTTTTTTTGGTGGTGGCC+GGG - chr4_2:15201333-15201352 Msa0591060:intron 50.0%
!!! ACTTTTTTTGGTGGTGGCCG+GGG - chr4_2:15201334-15201353 Msa0591060:intron 50.0%
CCAACTGAGTTAAGCTCACG+GGG - chr4_2:15201412-15201431 Msa0591060:intron 50.0%
CCCCGTGAGCTTAACTCAGT+TGG + chr4_2:15201415-15201434 None:intergenic 55.0%
TGGTGGTCGGGGTTCGAACC+CGG - chr4_2:15201298-15201317 Msa0591060:intron 65.0%
AAGGTCCGGGGTTCGAACCC+CGG + chr4_2:15201354-15201373 None:intergenic 65.0%
AGGGTTAGGGGCTATGGGCC+CGG + chr4_2:15201779-15201798 None:intergenic 65.0%
GGGTTAGGGGCTATGGGCCC+GGG + chr4_2:15201778-15201797 None:intergenic 70.0%
GGTGGCCGGGGTTCGAACCC+CGG - chr4_2:15201346-15201365 Msa0591060:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 15199258 15202595 15199258 ID=Msa0591060;Name=Msa0591060
chr4_2 mRNA 15199258 15202595 15199258 ID=Msa0591060-mRNA-1;Parent=Msa0591060;Name=Msa0591060-mRNA-1;_AED=0.22;_eAED=0.22;_QI=235|0.75|0.8|1|0.75|0.6|5|0|120
chr4_2 exon 15199258 15199307 15199258 ID=Msa0591060-mRNA-1:exon:4355;Parent=Msa0591060-mRNA-1
chr4_2 exon 15199565 15199654 15199565 ID=Msa0591060-mRNA-1:exon:4354;Parent=Msa0591060-mRNA-1
chr4_2 exon 15201079 15201268 15201079 ID=Msa0591060-mRNA-1:exon:4353;Parent=Msa0591060-mRNA-1
chr4_2 exon 15201685 15201801 15201685 ID=Msa0591060-mRNA-1:exon:4352;Parent=Msa0591060-mRNA-1
chr4_2 exon 15202445 15202595 15202445 ID=Msa0591060-mRNA-1:exon:4351;Parent=Msa0591060-mRNA-1
chr4_2 five_prime_UTR 15202445 15202595 15202445 ID=Msa0591060-mRNA-1:five_prime_utr;Parent=Msa0591060-mRNA-1
chr4_2 five_prime_UTR 15201718 15201801 15201718 ID=Msa0591060-mRNA-1:five_prime_utr;Parent=Msa0591060-mRNA-1
chr4_2 CDS 15201685 15201717 15201685 ID=Msa0591060-mRNA-1:cds;Parent=Msa0591060-mRNA-1
chr4_2 CDS 15201079 15201268 15201079 ID=Msa0591060-mRNA-1:cds;Parent=Msa0591060-mRNA-1
chr4_2 CDS 15199565 15199654 15199565 ID=Msa0591060-mRNA-1:cds;Parent=Msa0591060-mRNA-1
chr4_2 CDS 15199258 15199307 15199258 ID=Msa0591060-mRNA-1:cds;Parent=Msa0591060-mRNA-1
Gene Sequence

>Msa0591060

ATGGCGCTTTATGCAACTGCGTTATCGTTCAACGGACTTTCTTCTACTCTCAAGGAGTTCAGTTTCTTGCCGGGTTCGGTCATCAATAGCTTTCACAAGCGACATGATGTTTGTCTGCAATCCTTTAATCCAAATAAGTTAGCTTTTGGCAAAAGTTTTGAAAGAGGAGACGAACTGTGTTTGTTGCCTAATCAATGCCTCAAGTTGCAAATGAGAAGATTCATTGATGACGATGAAGGTGAAGATGACATTGAAGATGAAGATCTTATAATTCAATTGATCATGAATCATCCAGATCAACAAAGTACCAAAGGTTTATACGTTTTTGAAAAGGATGTTGTTCCTTTGAATAAGGAAGTGTAA

Protein sequence

>Msa0591060

MALYATALSFNGLSSTLKEFSFLPGSVINSFHKRHDVCLQSFNPNKLAFGKSFERGDELCLLPNQCLKLQMRRFIDDDEGEDDIEDEDLIIQLIMNHPDQQSTKGLYVFEKDVVPLNKEV*