AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0280490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0280490 MtrunA17_Chr2g0294391 88.398 181 12 1 7 187 254 425 7.28e-98 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCCTGAGCATCTCTTAT+TGG 0.255116 2_3:-15262537 Msa0280490:CDS
AGCATCTCTTATTGGCTCTA+AGG 0.283609 2_3:-15262529 Msa0280490:CDS
TGAAGCAGCTCCACCATATT+GGG 0.315800 2_3:+15262568 None:intergenic
AAGTTGAAGTTTCTAAGATT+TGG 0.338252 2_3:+15263623 None:intergenic
ATCTTAGAAACTTCAACTTA+TGG 0.342098 2_3:-15263619 Msa0280490:CDS
ATTGTTGAATCTCCAACATT+AGG 0.343139 2_3:+15263680 None:intergenic
TTGAAGCAGCTCCACCATAT+TGG 0.345826 2_3:+15262567 None:intergenic
CGTCCGATGAGTGGAGATAT+TGG 0.364584 2_3:-15263474 Msa0280490:CDS
TTAATTAGCGGCATAGCTTA+TGG 0.378193 2_3:-15262806 Msa0280490:CDS
TCTAAGGGAAGCACTTGCTT+TGG 0.385951 2_3:-15262513 Msa0280490:CDS
ATAGATTATAGACATTTAAC+AGG 0.392814 2_3:+15262485 None:intergenic
AGATCCATGCAATCCCAATA+TGG 0.397499 2_3:-15262581 Msa0280490:CDS
TTGTTTGTTTCCAGAATACT+TGG 0.412856 2_3:-15262873 Msa0280490:intron
GTCCGATGAGTGGAGATATT+GGG 0.417237 2_3:-15263473 Msa0280490:CDS
GATAGCCTTTGCTGTTCAAT+TGG 0.417577 2_3:-15263430 Msa0280490:CDS
TATTGGGAGAGGAGCAACTA+AGG 0.440476 2_3:-15263457 Msa0280490:CDS
CAGGTTAGTTTACCTAATGT+TGG 0.448264 2_3:-15263692 Msa0280490:CDS
TGCAGACATGTTCAGAATGT+TGG 0.464300 2_3:-15262614 Msa0280490:intron
GCAGGCTTTCTTCAACTAGC+TGG 0.466547 2_3:-15263046 Msa0280490:intron
ATTTACTATTGAAATGATCC+AGG 0.468782 2_3:-15263711 Msa0280490:CDS
AGGGAAGCACTTGCTTTGGT+TGG 0.480501 2_3:-15262509 Msa0280490:CDS
CCGCTAATTAACGCATATGA+TGG 0.487383 2_3:+15262818 None:intergenic
CAACATTAGGTAAACTAACC+TGG 0.488319 2_3:+15263693 None:intergenic
AGAGCCAATAAGAGATGCTC+AGG 0.491628 2_3:+15262533 None:intergenic
ACTAATGCTCACACAATTGA+AGG 0.491760 2_3:-15263019 Msa0280490:CDS
CCATCATATGCGTTAATTAG+CGG 0.493687 2_3:-15262818 Msa0280490:CDS
TAGAAACTTCAACTTATGGC+AGG 0.529444 2_3:-15263615 Msa0280490:intron
GGCTTTCTTCAACTAGCTGG+TGG 0.554213 2_3:-15263043 Msa0280490:CDS
GCATCTCTTATTGGCTCTAA+GGG 0.555107 2_3:-15262528 Msa0280490:CDS
AAAGCAAAAGATAGACCGCC+TGG 0.558324 2_3:-15263405 Msa0280490:intron
TTATGGTGGCTACGCGCGAA+AGG 0.564513 2_3:-15262789 Msa0280490:CDS
TTTAGCCAATTGAACAGCAA+AGG 0.571345 2_3:+15263425 None:intergenic
ATGAGTGGAGATATTGGGAG+AGG 0.585956 2_3:-15263468 Msa0280490:CDS
TCCACCATATTGGGATTGCA+TGG 0.586387 2_3:+15262577 None:intergenic
TTAGACGGCCGTCCGATGAG+TGG 0.595300 2_3:-15263483 Msa0280490:CDS
CTCCCAATATCTCCACTCAT+CGG 0.614980 2_3:+15263471 None:intergenic
CTGTATAAACTCAAGTTAGA+CGG 0.620531 2_3:-15263498 Msa0280490:intron
TCCATGCAATCCCAATATGG+TGG 0.635901 2_3:-15262578 Msa0280490:CDS
ATTAGCGGCATAGCTTATGG+TGG 0.665988 2_3:-15262803 Msa0280490:CDS
CAATATCTCCACTCATCGGA+CGG 0.667049 2_3:+15263475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTGTTAAAAGAAACA+TGG + chr2_3:15262686-15262705 None:intergenic 20.0%
!!! TCAATTTGTTAAAAGAAACA+TGG + chr2_3:15262686-15262705 None:intergenic 20.0%
! ATTTACTATTGAAATGATCC+AGG - chr2_3:15262501-15262520 Msa0280490:CDS 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + chr2_3:15262592-15262611 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - chr2_3:15262593-15262612 Msa0280490:CDS 25.0%
! AAGAAACATGGAATAGAATT+TGG + chr2_3:15262674-15262693 None:intergenic 25.0%
!!! GGAAAAGATTTTAATGAGAT+AGG - chr2_3:15262955-15262974 Msa0280490:intron 25.0%
! GACATGATATGAATCTAAAA+TGG - chr2_3:15263042-15263061 Msa0280490:CDS 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - chr2_3:15263208-15263227 Msa0280490:intron 25.0%
!! TGATACTTTGTAAAGTATCT+TGG - chr2_3:15263276-15263295 Msa0280490:intron 25.0%
! ATTTACTATTGAAATGATCC+AGG - chr2_3:15262501-15262520 Msa0280490:CDS 25.0%
!!! AAGTTGAAGTTTCTAAGATT+TGG + chr2_3:15262592-15262611 None:intergenic 25.0%
! ATCTTAGAAACTTCAACTTA+TGG - chr2_3:15262593-15262612 Msa0280490:CDS 25.0%
! AAGAAACATGGAATAGAATT+TGG + chr2_3:15262674-15262693 None:intergenic 25.0%
!!! GGAAAAGATTTTAATGAGAT+AGG - chr2_3:15262955-15262974 Msa0280490:intron 25.0%
! GACATGATATGAATCTAAAA+TGG - chr2_3:15263042-15263061 Msa0280490:CDS 25.0%
! ATTGAAGGATTGAAAAAAGA+AGG - chr2_3:15263208-15263227 Msa0280490:intron 25.0%
!! TGATACTTTGTAAAGTATCT+TGG - chr2_3:15263276-15263295 Msa0280490:intron 25.0%
ATTGTTGAATCTCCAACATT+AGG + chr2_3:15262535-15262554 None:intergenic 30.0%
GTCTAACTTGAGTTTATACA+GGG + chr2_3:15262715-15262734 None:intergenic 30.0%
CTGTATAAACTCAAGTTAGA+CGG - chr2_3:15262714-15262733 Msa0280490:intron 30.0%
GATAGGATATGGATATGATA+AGG - chr2_3:15262903-15262922 Msa0280490:intron 30.0%
!! AAGATTTTAATGAGATAGGC+AGG - chr2_3:15262959-15262978 Msa0280490:intron 30.0%
GTCAAGTTATCATATCATGA+TGG - chr2_3:15262999-15263018 Msa0280490:CDS 30.0%
ATGATATGTATAAACCCTGA+AGG + chr2_3:15263115-15263134 None:intergenic 30.0%
AATGTTTCATTCCCTTAACA+TGG - chr2_3:15263144-15263163 Msa0280490:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG - chr2_3:15263339-15263358 Msa0280490:intron 30.0%
! TTTTCATGATCCAAGTATTC+TGG + chr2_3:15263352-15263371 None:intergenic 30.0%
ATTGTTGAATCTCCAACATT+AGG + chr2_3:15262535-15262554 None:intergenic 30.0%
GTCTAACTTGAGTTTATACA+GGG + chr2_3:15262715-15262734 None:intergenic 30.0%
CTGTATAAACTCAAGTTAGA+CGG - chr2_3:15262714-15262733 Msa0280490:intron 30.0%
GATAGGATATGGATATGATA+AGG - chr2_3:15262903-15262922 Msa0280490:intron 30.0%
!! AAGATTTTAATGAGATAGGC+AGG - chr2_3:15262959-15262978 Msa0280490:intron 30.0%
GTCAAGTTATCATATCATGA+TGG - chr2_3:15262999-15263018 Msa0280490:CDS 30.0%
ATGATATGTATAAACCCTGA+AGG + chr2_3:15263115-15263134 None:intergenic 30.0%
AATGTTTCATTCCCTTAACA+TGG - chr2_3:15263144-15263163 Msa0280490:intron 30.0%
TTGTTTGTTTCCAGAATACT+TGG - chr2_3:15263339-15263358 Msa0280490:intron 30.0%
! TTTTCATGATCCAAGTATTC+TGG + chr2_3:15263352-15263371 None:intergenic 30.0%
CAACATTAGGTAAACTAACC+TGG + chr2_3:15262522-15262541 None:intergenic 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - chr2_3:15262520-15262539 Msa0280490:CDS 35.0%
TAGAAACTTCAACTTATGGC+AGG - chr2_3:15262597-15262616 Msa0280490:CDS 35.0%
CGTCTAACTTGAGTTTATAC+AGG + chr2_3:15262716-15262735 None:intergenic 35.0%
TTTAGCCAATTGAACAGCAA+AGG + chr2_3:15262790-15262809 None:intergenic 35.0%
TTGAATTGTGAATACGAACC+AGG + chr2_3:15262828-15262847 None:intergenic 35.0%
TCTCTATCATGACCATCAAA+CGG + chr2_3:15262881-15262900 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - chr2_3:15262881-15262900 Msa0280490:intron 35.0%
TAAGGTCTTAATCCTCATGT+TGG - chr2_3:15262921-15262940 Msa0280490:intron 35.0%
ACTAATGCTCACACAATTGA+AGG - chr2_3:15263193-15263212 Msa0280490:intron 35.0%
CCATCATATGCGTTAATTAG+CGG - chr2_3:15263394-15263413 Msa0280490:intron 35.0%
TTAATTAGCGGCATAGCTTA+TGG - chr2_3:15263406-15263425 Msa0280490:CDS 35.0%
TACAAAAAGTAGCATGCCAA+TGG + chr2_3:15263567-15263586 None:intergenic 35.0%
CAACATTAGGTAAACTAACC+TGG + chr2_3:15262522-15262541 None:intergenic 35.0%
!! CAGGTTAGTTTACCTAATGT+TGG - chr2_3:15262520-15262539 Msa0280490:CDS 35.0%
TAGAAACTTCAACTTATGGC+AGG - chr2_3:15262597-15262616 Msa0280490:CDS 35.0%
CGTCTAACTTGAGTTTATAC+AGG + chr2_3:15262716-15262735 None:intergenic 35.0%
TTTAGCCAATTGAACAGCAA+AGG + chr2_3:15262790-15262809 None:intergenic 35.0%
TTGAATTGTGAATACGAACC+AGG + chr2_3:15262828-15262847 None:intergenic 35.0%
TCTCTATCATGACCATCAAA+CGG + chr2_3:15262881-15262900 None:intergenic 35.0%
! TTTGATGGTCATGATAGAGA+CGG - chr2_3:15262881-15262900 Msa0280490:intron 35.0%
TAAGGTCTTAATCCTCATGT+TGG - chr2_3:15262921-15262940 Msa0280490:intron 35.0%
ACTAATGCTCACACAATTGA+AGG - chr2_3:15263193-15263212 Msa0280490:intron 35.0%
CCATCATATGCGTTAATTAG+CGG - chr2_3:15263394-15263413 Msa0280490:intron 35.0%
TTAATTAGCGGCATAGCTTA+TGG - chr2_3:15263406-15263425 Msa0280490:CDS 35.0%
TACAAAAAGTAGCATGCCAA+TGG + chr2_3:15263567-15263586 None:intergenic 35.0%
!! GATAGCCTTTGCTGTTCAAT+TGG - chr2_3:15262782-15262801 Msa0280490:CDS 40.0%
AATTGTGAATACGAACCAGG+CGG + chr2_3:15262825-15262844 None:intergenic 40.0%
! AGTCCTTTGAAAACCTTCAC+AGG - chr2_3:15262853-15262872 Msa0280490:CDS 40.0%
CTCTATCATGACCATCAAAC+GGG + chr2_3:15262880-15262899 None:intergenic 40.0%
TGATAGAGACGGATAGGATA+TGG - chr2_3:15262892-15262911 Msa0280490:intron 40.0%
!! CCTCATGTTGGTTTCTTACT+CGG - chr2_3:15262933-15262952 Msa0280490:intron 40.0%
!! CTCATGTTGGTTTCTTACTC+GGG - chr2_3:15262934-15262953 Msa0280490:intron 40.0%
CAGGATAAGAGAGACATGAT+AGG + chr2_3:15263079-15263098 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG - chr2_3:15263148-15263167 Msa0280490:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + chr2_3:15263158-15263177 None:intergenic 40.0%
GTTTAAGTAATGCTGTCACG+TGG - chr2_3:15263248-15263267 Msa0280490:intron 40.0%
CCGCTAATTAACGCATATGA+TGG + chr2_3:15263397-15263416 None:intergenic 40.0%
CTCACATTATGTGATGCCAT+TGG - chr2_3:15263548-15263567 Msa0280490:intron 40.0%
TGCAGACATGTTCAGAATGT+TGG - chr2_3:15263598-15263617 Msa0280490:intron 40.0%
AGATCCATGCAATCCCAATA+TGG - chr2_3:15263631-15263650 Msa0280490:CDS 40.0%
TCATCCTGAGCATCTCTTAT+TGG - chr2_3:15263675-15263694 Msa0280490:CDS 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - chr2_3:15263683-15263702 Msa0280490:CDS 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - chr2_3:15263684-15263703 Msa0280490:CDS 40.0%
!! GATAGCCTTTGCTGTTCAAT+TGG - chr2_3:15262782-15262801 Msa0280490:CDS 40.0%
AATTGTGAATACGAACCAGG+CGG + chr2_3:15262825-15262844 None:intergenic 40.0%
! AGTCCTTTGAAAACCTTCAC+AGG - chr2_3:15262853-15262872 Msa0280490:CDS 40.0%
CTCTATCATGACCATCAAAC+GGG + chr2_3:15262880-15262899 None:intergenic 40.0%
TGATAGAGACGGATAGGATA+TGG - chr2_3:15262892-15262911 Msa0280490:intron 40.0%
!! CCTCATGTTGGTTTCTTACT+CGG - chr2_3:15262933-15262952 Msa0280490:intron 40.0%
!! CTCATGTTGGTTTCTTACTC+GGG - chr2_3:15262934-15262953 Msa0280490:intron 40.0%
CAGGATAAGAGAGACATGAT+AGG + chr2_3:15263079-15263098 None:intergenic 40.0%
TTTCATTCCCTTAACATGGC+AGG - chr2_3:15263148-15263167 Msa0280490:intron 40.0%
AAGAAAGCCTGCCATGTTAA+GGG + chr2_3:15263158-15263177 None:intergenic 40.0%
GTTTAAGTAATGCTGTCACG+TGG - chr2_3:15263248-15263267 Msa0280490:intron 40.0%
CCGCTAATTAACGCATATGA+TGG + chr2_3:15263397-15263416 None:intergenic 40.0%
CTCACATTATGTGATGCCAT+TGG - chr2_3:15263548-15263567 Msa0280490:intron 40.0%
TGCAGACATGTTCAGAATGT+TGG - chr2_3:15263598-15263617 Msa0280490:intron 40.0%
AGATCCATGCAATCCCAATA+TGG - chr2_3:15263631-15263650 Msa0280490:CDS 40.0%
TCATCCTGAGCATCTCTTAT+TGG - chr2_3:15263675-15263694 Msa0280490:CDS 40.0%
!! AGCATCTCTTATTGGCTCTA+AGG - chr2_3:15263683-15263702 Msa0280490:CDS 40.0%
!! GCATCTCTTATTGGCTCTAA+GGG - chr2_3:15263684-15263703 Msa0280490:CDS 40.0%
ACTTCAACTTATGGCAGGTG+TGG - chr2_3:15262602-15262621 Msa0280490:CDS 45.0%
CAATATCTCCACTCATCGGA+CGG + chr2_3:15262740-15262759 None:intergenic 45.0%
GTCCGATGAGTGGAGATATT+GGG - chr2_3:15262739-15262758 Msa0280490:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG + chr2_3:15262744-15262763 None:intergenic 45.0%
ATGAGTGGAGATATTGGGAG+AGG - chr2_3:15262744-15262763 Msa0280490:intron 45.0%
TATTGGGAGAGGAGCAACTA+AGG - chr2_3:15262755-15262774 Msa0280490:intron 45.0%
AAAGCAAAAGATAGACCGCC+TGG - chr2_3:15262807-15262826 Msa0280490:CDS 45.0%
! GGTCCTGTGAAGGTTTTCAA+AGG + chr2_3:15262859-15262878 None:intergenic 45.0%
TGGTCATGATAGAGACGGAT+AGG - chr2_3:15262886-15262905 Msa0280490:intron 45.0%
CCGAGTAAGAAACCAACATG+AGG + chr2_3:15262936-15262955 None:intergenic 45.0%
GCAGGATATGATATGCGACA+TGG - chr2_3:15262977-15262996 Msa0280490:intron 45.0%
TCTTATCCTGACCATCGAAC+AGG - chr2_3:15263089-15263108 Msa0280490:intron 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + chr2_3:15263159-15263178 None:intergenic 45.0%
ATTAGCGGCATAGCTTATGG+TGG - chr2_3:15263409-15263428 Msa0280490:CDS 45.0%
TCCATGCAATCCCAATATGG+TGG - chr2_3:15263634-15263653 Msa0280490:CDS 45.0%
TCCACCATATTGGGATTGCA+TGG + chr2_3:15263638-15263657 None:intergenic 45.0%
TGAAGCAGCTCCACCATATT+GGG + chr2_3:15263647-15263666 None:intergenic 45.0%
TTGAAGCAGCTCCACCATAT+TGG + chr2_3:15263648-15263667 None:intergenic 45.0%
AGAGCCAATAAGAGATGCTC+AGG + chr2_3:15263682-15263701 None:intergenic 45.0%
!! TCTAAGGGAAGCACTTGCTT+TGG - chr2_3:15263699-15263718 Msa0280490:CDS 45.0%
ACTTCAACTTATGGCAGGTG+TGG - chr2_3:15262602-15262621 Msa0280490:CDS 45.0%
CAATATCTCCACTCATCGGA+CGG + chr2_3:15262740-15262759 None:intergenic 45.0%
GTCCGATGAGTGGAGATATT+GGG - chr2_3:15262739-15262758 Msa0280490:intron 45.0%
CTCCCAATATCTCCACTCAT+CGG + chr2_3:15262744-15262763 None:intergenic 45.0%
ATGAGTGGAGATATTGGGAG+AGG - chr2_3:15262744-15262763 Msa0280490:intron 45.0%
TATTGGGAGAGGAGCAACTA+AGG - chr2_3:15262755-15262774 Msa0280490:intron 45.0%
AAAGCAAAAGATAGACCGCC+TGG - chr2_3:15262807-15262826 Msa0280490:CDS 45.0%
! GGTCCTGTGAAGGTTTTCAA+AGG + chr2_3:15262859-15262878 None:intergenic 45.0%
TGGTCATGATAGAGACGGAT+AGG - chr2_3:15262886-15262905 Msa0280490:intron 45.0%
CCGAGTAAGAAACCAACATG+AGG + chr2_3:15262936-15262955 None:intergenic 45.0%
GCAGGATATGATATGCGACA+TGG - chr2_3:15262977-15262996 Msa0280490:intron 45.0%
TCTTATCCTGACCATCGAAC+AGG - chr2_3:15263089-15263108 Msa0280490:intron 45.0%
GAAGAAAGCCTGCCATGTTA+AGG + chr2_3:15263159-15263178 None:intergenic 45.0%
ATTAGCGGCATAGCTTATGG+TGG - chr2_3:15263409-15263428 Msa0280490:CDS 45.0%
TCCATGCAATCCCAATATGG+TGG - chr2_3:15263634-15263653 Msa0280490:CDS 45.0%
TCCACCATATTGGGATTGCA+TGG + chr2_3:15263638-15263657 None:intergenic 45.0%
TGAAGCAGCTCCACCATATT+GGG + chr2_3:15263647-15263666 None:intergenic 45.0%
TTGAAGCAGCTCCACCATAT+TGG + chr2_3:15263648-15263667 None:intergenic 45.0%
AGAGCCAATAAGAGATGCTC+AGG + chr2_3:15263682-15263701 None:intergenic 45.0%
!! TCTAAGGGAAGCACTTGCTT+TGG - chr2_3:15263699-15263718 Msa0280490:CDS 45.0%
CGTCCGATGAGTGGAGATAT+TGG - chr2_3:15262738-15262757 Msa0280490:intron 50.0%
GCAGGCTTTCTTCAACTAGC+TGG - chr2_3:15263166-15263185 Msa0280490:intron 50.0%
GGCTTTCTTCAACTAGCTGG+TGG - chr2_3:15263169-15263188 Msa0280490:intron 50.0%
!! AGGGAAGCACTTGCTTTGGT+TGG - chr2_3:15263703-15263722 Msa0280490:CDS 50.0%
CGTCCGATGAGTGGAGATAT+TGG - chr2_3:15262738-15262757 Msa0280490:intron 50.0%
GCAGGCTTTCTTCAACTAGC+TGG - chr2_3:15263166-15263185 Msa0280490:intron 50.0%
GGCTTTCTTCAACTAGCTGG+TGG - chr2_3:15263169-15263188 Msa0280490:intron 50.0%
!! AGGGAAGCACTTGCTTTGGT+TGG - chr2_3:15263703-15263722 Msa0280490:CDS 50.0%
CCATCAAACGGGTCCTGTGA+AGG + chr2_3:15262869-15262888 None:intergenic 55.0%
CCTTCACAGGACCCGTTTGA+TGG - chr2_3:15262866-15262885 Msa0280490:intron 55.0%
TGAAGGCCTGTTCGATGGTC+AGG + chr2_3:15263098-15263117 None:intergenic 55.0%
TGACCATCGAACAGGCCTTC+AGG - chr2_3:15263097-15263116 Msa0280490:intron 55.0%
GACCATCGAACAGGCCTTCA+GGG - chr2_3:15263098-15263117 Msa0280490:intron 55.0%
AACCCTGAAGGCCTGTTCGA+TGG + chr2_3:15263103-15263122 None:intergenic 55.0%
TTATGGTGGCTACGCGCGAA+AGG - chr2_3:15263423-15263442 Msa0280490:CDS 55.0%
CCATCAAACGGGTCCTGTGA+AGG + chr2_3:15262869-15262888 None:intergenic 55.0%
CCTTCACAGGACCCGTTTGA+TGG - chr2_3:15262866-15262885 Msa0280490:intron 55.0%
TGAAGGCCTGTTCGATGGTC+AGG + chr2_3:15263098-15263117 None:intergenic 55.0%
TGACCATCGAACAGGCCTTC+AGG - chr2_3:15263097-15263116 Msa0280490:intron 55.0%
GACCATCGAACAGGCCTTCA+GGG - chr2_3:15263098-15263117 Msa0280490:intron 55.0%
AACCCTGAAGGCCTGTTCGA+TGG + chr2_3:15263103-15263122 None:intergenic 55.0%
TTATGGTGGCTACGCGCGAA+AGG - chr2_3:15263423-15263442 Msa0280490:CDS 55.0%
TTAGACGGCCGTCCGATGAG+TGG - chr2_3:15262729-15262748 Msa0280490:intron 60.0%
TTAGACGGCCGTCCGATGAG+TGG - chr2_3:15262729-15262748 Msa0280490:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 15262490 15263744 15262490 ID=Msa0280490;Name=Msa0280490
chr2_3 mRNA 15262490 15263744 15262490 ID=Msa0280490-mRNA-1;Parent=Msa0280490;Name=Msa0280490-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0.25|0|1|1|1|5|0|187
chr2_3 exon 15263616 15263744 15263616 ID=Msa0280490-mRNA-1:exon:6374;Parent=Msa0280490-mRNA-1
chr2_3 exon 15263406 15263505 15263406 ID=Msa0280490-mRNA-1:exon:6373;Parent=Msa0280490-mRNA-1
chr2_3 exon 15262981 15263064 15262981 ID=Msa0280490-mRNA-1:exon:6372;Parent=Msa0280490-mRNA-1
chr2_3 exon 15262773 15262881 15262773 ID=Msa0280490-mRNA-1:exon:6371;Parent=Msa0280490-mRNA-1
chr2_3 exon 15262490 15262631 15262490 ID=Msa0280490-mRNA-1:exon:6370;Parent=Msa0280490-mRNA-1
chr2_3 CDS 15263616 15263744 15263616 ID=Msa0280490-mRNA-1:cds;Parent=Msa0280490-mRNA-1
chr2_3 CDS 15263406 15263505 15263406 ID=Msa0280490-mRNA-1:cds;Parent=Msa0280490-mRNA-1
chr2_3 CDS 15262981 15263064 15262981 ID=Msa0280490-mRNA-1:cds;Parent=Msa0280490-mRNA-1
chr2_3 CDS 15262773 15262881 15262773 ID=Msa0280490-mRNA-1:cds;Parent=Msa0280490-mRNA-1
chr2_3 CDS 15262490 15262631 15262490 ID=Msa0280490-mRNA-1:cds;Parent=Msa0280490-mRNA-1
Gene Sequence

>Msa0280490

TTGATTCAACAATTTACTATTGAAATGATCCAGGTTAGTTTACCTAATGTTGGAGATTCAACAATATCTTCTATGAACAAAATGTTCTCTATTATGAAACCAAATCTTAGAAACTTCAACTTATGGCAGTTAGACGGCCGTCCGATGAGTGGAGATATTGGGAGAGGAGCAACTAAGGAGTCGATAGCCTTTGCTGTTCAATTGGCTAAAGCAAAAGATAGACCGCCTGGCTTTCTTCAACTAGCTGGTGGAACTAATGCTCACACAATTGAAGGATTGAAAAAAGAAGGACTCTTTCAAACAACTAGTTTAAAATACTTGGATCATGAAAATTCAACAGTCAGTACATCTAATCCATCATATGCGTTAATTAGCGGCATAGCTTATGGTGGCTACGCGCGAAAGGTAACGCAACTATTTTTACATGTTCAGAATGTTGGTAGAGTATTGAGATCCATGCAATCCCAATATGGTGGAGCTGCTTCAATTGAAGATCATCCTGAGCATCTCTTATTGGCTCTAAGGGAAGCACTTGCTTTGGTTGGACCTGTTAAATGTCTATAA

Protein sequence

>Msa0280490

LIQQFTIEMIQVSLPNVGDSTISSMNKMFSIMKPNLRNFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKAKDRPPGFLQLAGGTNAHTIEGLKKEGLFQTTSLKYLDHENSTVSTSNPSYALISGIAYGGYARKVTQLFLHVQNVGRVLRSMQSQYGGAASIEDHPEHLLLALREALALVGPVKCL*