Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400680 | AES81657.1 | 92.937 | 269 | 7 | 1 | 1 | 257 | 167 | 435 | 4.42e-180 | 512 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400680 | sp|Q9LF27|WDR12_ARATH | 66.791 | 268 | 76 | 2 | 2 | 256 | 165 | 432 | 3.79e-127 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400680 | G7KYJ7 | 92.937 | 269 | 7 | 1 | 1 | 257 | 167 | 435 | 2.11e-180 | 512 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1257450 | Msa1400680 | 0.814997 | 1.158185e-51 | -8.615850e-47 |
| Msa1037080 | Msa1400680 | 0.807698 | 4.451498e-50 | -8.615850e-47 |
| Msa1211820 | Msa1400680 | 0.804889 | 1.738936e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400680 | MtrunA17_Chr7g0262491 | 92.937 | 269 | 7 | 1 | 1 | 257 | 167 | 435 | 0.0 | 511 |
| Msa1400680 | MtrunA17_Chr4g0067151 | 25.097 | 259 | 145 | 8 | 6 | 256 | 42 | 259 | 3.53e-13 | 68.2 |
| Msa1400680 | MtrunA17_Chr8g0392701 | 26.500 | 200 | 110 | 7 | 6 | 177 | 31 | 221 | 5.68e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1400680 | AT5G15550.1 | 66.791 | 268 | 76 | 2 | 2 | 256 | 165 | 432 | 3.85e-128 | 370 |
| Msa1400680 | AT5G15550.3 | 66.791 | 268 | 76 | 2 | 2 | 256 | 165 | 432 | 3.85e-128 | 370 |
| Msa1400680 | AT5G15550.2 | 69.869 | 229 | 68 | 1 | 2 | 229 | 165 | 393 | 1.71e-118 | 345 |
| Msa1400680 | AT3G49660.1 | 26.923 | 260 | 135 | 11 | 6 | 256 | 39 | 252 | 5.12e-14 | 70.9 |
| Msa1400680 | AT2G41500.1 | 27.477 | 222 | 121 | 7 | 6 | 225 | 313 | 496 | 7.22e-14 | 71.2 |
| Msa1400680 | AT2G41500.2 | 27.477 | 222 | 121 | 7 | 6 | 225 | 313 | 496 | 7.22e-14 | 71.2 |
| Msa1400680 | AT4G15900.1 | 25.373 | 201 | 107 | 6 | 33 | 225 | 167 | 332 | 4.18e-12 | 65.9 |
| Msa1400680 | AT5G08390.1 | 26.872 | 227 | 124 | 8 | 6 | 229 | 32 | 219 | 7.54e-12 | 65.5 |
| Msa1400680 | AT1G48630.1 | 26.904 | 197 | 113 | 8 | 6 | 177 | 31 | 221 | 2.13e-11 | 63.5 |
| Msa1400680 | AT5G23430.1 | 25.877 | 228 | 125 | 9 | 6 | 229 | 32 | 219 | 4.27e-11 | 63.2 |
| Msa1400680 | AT5G23430.3 | 25.877 | 228 | 125 | 9 | 6 | 229 | 32 | 219 | 4.64e-11 | 63.2 |
| Msa1400680 | AT5G23430.2 | 25.877 | 228 | 125 | 9 | 6 | 229 | 32 | 219 | 4.64e-11 | 63.2 |
| Msa1400680 | AT3G18130.1 | 26.904 | 197 | 113 | 8 | 6 | 177 | 31 | 221 | 9.91e-11 | 61.6 |
Find 72 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCGCATTTGAATTATTTA+TGG | 0.173320 | tig0022476:+3898 | Msa1400680:three_prime_UTR |
| GGGATCATTCTATTAGAAAA+TGG | 0.173356 | tig0022476:+2022 | Msa1400680:CDS |
| ATCAGGTTTGTTCTGGTTCT+TGG | 0.176128 | tig0022476:+1252 | Msa1400680:intron |
| CTGACCCCGTCGTTAGGATT+TGG | 0.240558 | tig0022476:+2860 | Msa1400680:CDS |
| AGTTTGCTTCTCATACTTCT+TGG | 0.269982 | tig0022476:+3017 | Msa1400680:CDS |
| ATAGGATAAAACACTAATAT+TGG | 0.273412 | tig0022476:-3731 | None:intergenic |
| TTGGGTGCCTCGGACAAAAT+TGG | 0.287839 | tig0022476:-3712 | None:intergenic |
| TCACATGATCAGGTTTGTTC+TGG | 0.299186 | tig0022476:+1245 | Msa1400680:intron |
| TGACCCCGTCGTTAGGATTT+GGG | 0.302501 | tig0022476:+2861 | Msa1400680:CDS |
| ATGATGGGAAAGTTATGTTA+TGG | 0.343677 | tig0022476:+3095 | Msa1400680:CDS |
| TCAGGTTTGTTCTGGTTCTT+GGG | 0.356523 | tig0022476:+1253 | Msa1400680:intron |
| GTTTGCTTCTCATACTTCTT+GGG | 0.370787 | tig0022476:+3018 | Msa1400680:CDS |
| TTACTTTCTGCATCTTATGA+TGG | 0.391325 | tig0022476:+3079 | Msa1400680:CDS |
| TGATGGGAAAGTTATGTTAT+GGG | 0.397814 | tig0022476:+3096 | Msa1400680:CDS |
| AATTGAGGACTCTCAATTAG+AGG | 0.410780 | tig0022476:+1358 | Msa1400680:CDS |
| GTCAATCTATTCTGCATCTT+GGG | 0.418571 | tig0022476:+2002 | Msa1400680:CDS |
| ATTGATTTGCCATAGGTTGA+TGG | 0.422151 | tig0022476:-1282 | None:intergenic |
| GGATCATTCTATTAGAAAAT+GGG | 0.423019 | tig0022476:+2023 | Msa1400680:CDS |
| TAGGATAAAACACTAATATT+GGG | 0.427937 | tig0022476:-3730 | None:intergenic |
| AGTCAATCTATTCTGCATCT+TGG | 0.432069 | tig0022476:+2001 | Msa1400680:CDS |
| CAGAAGACACGCACTGTGTA+TGG | 0.444936 | tig0022476:-1960 | None:intergenic |
| GAATAGATTGACTCTCTTTG+TGG | 0.456040 | tig0022476:-1991 | None:intergenic |
| AGTGCGTGTCTTCTGTGATT+TGG | 0.460545 | tig0022476:+1968 | Msa1400680:CDS |
| TACTTTCTGCATCTTATGAT+GGG | 0.461054 | tig0022476:+3080 | Msa1400680:CDS |
| GTGGTTCTGACCCCGTCGTT+AGG | 0.469886 | tig0022476:+2854 | Msa1400680:CDS |
| AGCACAGACTAATGGAGAAA+TGG | 0.475455 | tig0022476:+1140 | Msa1400680:CDS |
| AACACTAATATTGGGTGCCT+CGG | 0.489332 | tig0022476:-3722 | None:intergenic |
| CTCAGGTACTGTGTGCTGAC+TGG | 0.491291 | tig0022476:+3577 | Msa1400680:intron |
| ATTTGGGATCCTCGTAAGCC+AGG | 0.493346 | tig0022476:+2877 | Msa1400680:CDS |
| AGCGTTGCAGCACAGACTAA+TGG | 0.493660 | tig0022476:+1132 | Msa1400680:CDS |
| CTTGGGTTACAACTGTCAAA+TGG | 0.498377 | tig0022476:+3035 | Msa1400680:CDS |
| CCTTCCATAGCCTTAGTGTC+CGG | 0.509072 | tig0022476:-925 | None:intergenic |
| CTGAAGTGTCGGTGTTACAT+AGG | 0.516657 | tig0022476:-3749 | None:intergenic |
| GCTCTTAACTGCCTCGACAT+TGG | 0.517931 | tig0022476:+2802 | Msa1400680:CDS |
| AACGACGGGGTCAGAACCAC+CGG | 0.522480 | tig0022476:-2851 | None:intergenic |
| TAGTGTCATTGATTTGCCAT+AGG | 0.522663 | tig0022476:-1289 | None:intergenic |
| GGATCCCAAATCCTAACGAC+GGG | 0.525357 | tig0022476:-2865 | None:intergenic |
| TCTAAGAAGAGAAAAGTTGA+AGG | 0.525776 | tig0022476:+1332 | Msa1400680:CDS |
| AGAAAATGGGATGTTGAGAA+AGG | 0.527515 | tig0022476:+2036 | Msa1400680:CDS |
| CTTAACTGCCTCGACATTGG+AGG | 0.533061 | tig0022476:+2805 | Msa1400680:CDS |
| AGGATGGTTGGTAGCCTCCT+CGG | 0.537861 | tig0022476:-1058 | None:intergenic |
| GGGATTGCACCATCAACCTA+TGG | 0.543441 | tig0022476:+1273 | Msa1400680:CDS |
| CTTCTAAAGACCGGACACTA+AGG | 0.545266 | tig0022476:+915 | Msa1400680:CDS |
| GACACTTCAGATTGAAGTCC+TGG | 0.548284 | tig0022476:+3762 | Msa1400680:three_prime_UTR |
| TTAACTGCCTCGACATTGGA+GGG | 0.552608 | tig0022476:+2806 | Msa1400680:CDS |
| CGACGTGTACATCACTGTAC+AGG | 0.553749 | tig0022476:-3663 | None:intergenic |
| TCTAACCCTCGCAGGATGGT+TGG | 0.554674 | tig0022476:-1070 | None:intergenic |
| AGTTCTGCTCTGATAGCTGC+CGG | 0.556396 | tig0022476:+2832 | Msa1400680:CDS |
| TTGTAAGCTCTAACCCTCGC+AGG | 0.558984 | tig0022476:-1078 | None:intergenic |
| AAAAGTTGAAGGTCGAATTG+AGG | 0.564197 | tig0022476:+1343 | Msa1400680:CDS |
| AAGACCGGACACTAAGGCTA+TGG | 0.564827 | tig0022476:+921 | Msa1400680:CDS |
| TAGCTACTGCTTCTAAAGAC+CGG | 0.565042 | tig0022476:+906 | Msa1400680:CDS |
| TATATAAAAGATCAATACCG+AGG | 0.609462 | tig0022476:+1041 | Msa1400680:intron |
| AACTTTCCCCTCCAATGTCG+AGG | 0.616690 | tig0022476:-2813 | None:intergenic |
| GGCTACCAACCATCCTGCGA+GGG | 0.623304 | tig0022476:+1065 | Msa1400680:CDS |
| AGGACTTCAATCTGAAGTGT+CGG | 0.626714 | tig0022476:-3760 | None:intergenic |
| AGGTACTGTGTGCTGACTGG+TGG | 0.628913 | tig0022476:+3580 | Msa1400680:intron |
| AAGCTCTAACCCTCGCAGGA+TGG | 0.633079 | tig0022476:-1074 | None:intergenic |
| CCGGACACTAAGGCTATGGA+AGG | 0.638818 | tig0022476:+925 | Msa1400680:CDS |
| TAACTGCCTCGACATTGGAG+GGG | 0.640508 | tig0022476:+2807 | Msa1400680:CDS |
| AGAGCTTACAAAATCTTGCG+TGG | 0.644410 | tig0022476:+1090 | Msa1400680:CDS |
| TACCATAAATAATTCAAATG+CGG | 0.656105 | tig0022476:-3900 | None:intergenic |
| ATTGATCACATTCTGACACC+AGG | 0.660476 | tig0022476:-3780 | None:intergenic |
| AGTGACAGTGTTATCAGTGG+TGG | 0.677331 | tig0022476:+3606 | Msa1400680:CDS |
| AGGCTACCAACCATCCTGCG+AGG | 0.682433 | tig0022476:+1064 | Msa1400680:CDS |
| AGGATCCCAAATCCTAACGA+CGG | 0.689465 | tig0022476:-2866 | None:intergenic |
| TCTGCTCTGATAGCTGCCGG+TGG | 0.691399 | tig0022476:+2835 | Msa1400680:CDS |
| ATAAAAGATCAATACCGAGG+AGG | 0.705123 | tig0022476:+1044 | Msa1400680:intron |
| GCACTGTGTATGGCCTACGA+GGG | 0.729685 | tig0022476:-1950 | None:intergenic |
| AAAAGTGACAGTGTTATCAG+TGG | 0.748664 | tig0022476:+3603 | Msa1400680:CDS |
| GATCCCAAATCCTAACGACG+GGG | 0.762014 | tig0022476:-2864 | None:intergenic |
| GTTATGGGATCTGAGAACTG+CGG | 0.776202 | tig0022476:+3111 | Msa1400680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCGTAATACAAAATATTT+GGG | - | tig0022476:1467-1486 | None:intergenic | 15.0% |
| !! | ATATCGTAATACAAAATATT+TGG | - | tig0022476:1468-1487 | None:intergenic | 15.0% |
| !!! | ATAATACACTGTTTTATTAT+AGG | + | tig0022476:1912-1931 | Msa1400680:intron | 15.0% |
| !!! | TAATACACTGTTTTATTATA+GGG | + | tig0022476:1913-1932 | Msa1400680:intron | 15.0% |
| !! | AAAAATACTTGGTTAAAATA+AGG | - | tig0022476:3145-3164 | None:intergenic | 15.0% |
| !! | ACAATATAAGAAGAACAATA+AGG | - | tig0022476:1403-1422 | None:intergenic | 20.0% |
| !!! | CTTTTTCTTCTTATACATAA+TGG | - | tig0022476:1638-1657 | None:intergenic | 20.0% |
| !! | AGTACAAACATATTAACAAA+GGG | - | tig0022476:1690-1709 | None:intergenic | 20.0% |
| !! | AATAATTAAATGACAAAGCA+CGG | - | tig0022476:2182-2201 | None:intergenic | 20.0% |
| !!! | AACAAGTTATACTGATTTTT+TGG | - | tig0022476:2555-2574 | None:intergenic | 20.0% |
| !!! | ACCAAGTATTTTTTTACTTT+TGG | + | tig0022476:3152-3171 | Msa1400680:intron | 20.0% |
| !! | ACCAAAAGTAAAAAAATACT+TGG | - | tig0022476:3156-3175 | None:intergenic | 20.0% |
| !!! | TTTCTTTCTATGTTTTAGAA+GGG | + | tig0022476:3268-3287 | Msa1400680:intron | 20.0% |
| !! | CAAAAATAAAATTCTATCAG+AGG | - | tig0022476:3552-3571 | None:intergenic | 20.0% |
| !!! | ATTTTATTTTTGTTCAACTC+AGG | + | tig0022476:3560-3579 | Msa1400680:intron | 20.0% |
| !! | TAGGATAAAACACTAATATT+GGG | - | tig0022476:3733-3752 | None:intergenic | 20.0% |
| !! | ATAGGATAAAACACTAATAT+TGG | - | tig0022476:3734-3753 | None:intergenic | 20.0% |
| !! | TACCATAAATAATTCAAATG+CGG | - | tig0022476:3903-3922 | None:intergenic | 20.0% |
| ! | TATATAAAAGATCAATACCG+AGG | + | tig0022476:1041-1060 | Msa1400680:intron | 25.0% |
| ! | CAGTACAAACATATTAACAA+AGG | - | tig0022476:1691-1710 | None:intergenic | 25.0% |
| ! | AAGACTGAAACTATTTGAAA+AGG | + | tig0022476:1726-1745 | Msa1400680:intron | 25.0% |
| ! | AAGAATGATCTATCCAAAAA+GGG | - | tig0022476:1862-1881 | None:intergenic | 25.0% |
| ! | AAAGAATGATCTATCCAAAA+AGG | - | tig0022476:1863-1882 | None:intergenic | 25.0% |
| ! | GGATCATTCTATTAGAAAAT+GGG | + | tig0022476:2023-2042 | Msa1400680:CDS | 25.0% |
| ! | TTAATTATTTGCGTGCAAAT+AGG | + | tig0022476:2193-2212 | Msa1400680:intron | 25.0% |
| ! | TCATAATCATAGCAAGAATA+AGG | - | tig0022476:2388-2407 | None:intergenic | 25.0% |
| ! | AAAAATGATAGGTTCATAAC+AGG | - | tig0022476:2436-2455 | None:intergenic | 25.0% |
| !!! | AAGTTATACTGATTTTTTGG+TGG | - | tig0022476:2552-2571 | None:intergenic | 25.0% |
| !!! | TTTTGGTGTAATTATTTCGT+TGG | + | tig0022476:3169-3188 | Msa1400680:intron | 25.0% |
| !! | TTTGGTGTAATTATTTCGTT+GGG | + | tig0022476:3170-3189 | Msa1400680:intron | 25.0% |
| !!! | CTTTCTTTCTATGTTTTAGA+AGG | + | tig0022476:3267-3286 | Msa1400680:intron | 25.0% |
| !!! | TTCTTTCTATGTTTTAGAAG+GGG | + | tig0022476:3269-3288 | Msa1400680:intron | 25.0% |
| ! | TACCGCATTTGAATTATTTA+TGG | + | tig0022476:3898-3917 | Msa1400680:three_prime_UTR | 25.0% |
| !!! | ATTTTGAGTTTCTACACACT+TGG | + | tig0022476:1180-1199 | Msa1400680:intron | 30.0% |
| TCTAAGAAGAGAAAAGTTGA+AGG | + | tig0022476:1332-1351 | Msa1400680:CDS | 30.0% | |
| !! | ATATCTATTCTAGCTCCTAA+GGG | + | tig0022476:1484-1503 | Msa1400680:intron | 30.0% |
| !!! | CTTTTGTTTTAATTGATGCG+TGG | + | tig0022476:1538-1557 | Msa1400680:intron | 30.0% |
| TGTTAATATGTTTGTACTGC+TGG | + | tig0022476:1692-1711 | Msa1400680:intron | 30.0% | |
| !!! | TTTTTTGCTCTTTCCCTTTT+TGG | + | tig0022476:1846-1865 | Msa1400680:intron | 30.0% |
| GGGATCATTCTATTAGAAAA+TGG | + | tig0022476:2022-2041 | Msa1400680:CDS | 30.0% | |
| ATAGTGTACAATTTCGACAA+CGG | - | tig0022476:2112-2131 | None:intergenic | 30.0% | |
| ! | TGGTAATTTAGAACTGGATT+AGG | + | tig0022476:2217-2236 | Msa1400680:intron | 30.0% |
| ! | GGTAATTTAGAACTGGATTA+GGG | + | tig0022476:2218-2237 | Msa1400680:intron | 30.0% |
| GATTATGAGTTATTCCTAGT+TGG | + | tig0022476:2409-2428 | Msa1400680:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | + | tig0022476:2505-2524 | Msa1400680:intron | 30.0% | |
| !!! | TTATACTGATTTTTTGGTGG+TGG | - | tig0022476:2549-2568 | None:intergenic | 30.0% |
| TAATACCAACAAAGAAGTGA+AGG | - | tig0022476:2671-2690 | None:intergenic | 30.0% | |
| ! | AAGCAGTTTAAATTTTCTGC+AGG | + | tig0022476:2974-2993 | Msa1400680:intron | 30.0% |
| TTACTTTCTGCATCTTATGA+TGG | + | tig0022476:3079-3098 | Msa1400680:CDS | 30.0% | |
| TACTTTCTGCATCTTATGAT+GGG | + | tig0022476:3080-3099 | Msa1400680:CDS | 30.0% | |
| ! | ATGATGGGAAAGTTATGTTA+TGG | + | tig0022476:3095-3114 | Msa1400680:CDS | 30.0% |
| TGATGGGAAAGTTATGTTAT+GGG | + | tig0022476:3096-3115 | Msa1400680:CDS | 30.0% | |
| ATAAAAGATCAATACCGAGG+AGG | + | tig0022476:1044-1063 | Msa1400680:intron | 35.0% | |
| !! | ATTGATTTGCCATAGGTTGA+TGG | - | tig0022476:1285-1304 | None:intergenic | 35.0% |
| !! | TAGTGTCATTGATTTGCCAT+AGG | - | tig0022476:1292-1311 | None:intergenic | 35.0% |
| AAAAGTTGAAGGTCGAATTG+AGG | + | tig0022476:1343-1362 | Msa1400680:CDS | 35.0% | |
| AATTGAGGACTCTCAATTAG+AGG | + | tig0022476:1358-1377 | Msa1400680:CDS | 35.0% | |
| AAGAAGAACAATAAGGTGCA+AGG | - | tig0022476:1396-1415 | None:intergenic | 35.0% | |
| !! | GATATCTATTCTAGCTCCTA+AGG | + | tig0022476:1483-1502 | Msa1400680:intron | 35.0% |
| !! | TATCTATTCTAGCTCCTAAG+GGG | + | tig0022476:1485-1504 | Msa1400680:intron | 35.0% |
| GCGTGGAATAGTAAAATCTA+AGG | + | tig0022476:1555-1574 | Msa1400680:intron | 35.0% | |
| ! | GAATAGATTGACTCTCTTTG+TGG | - | tig0022476:1994-2013 | None:intergenic | 35.0% |
| AGTCAATCTATTCTGCATCT+TGG | + | tig0022476:2001-2020 | Msa1400680:CDS | 35.0% | |
| GTCAATCTATTCTGCATCTT+GGG | + | tig0022476:2002-2021 | Msa1400680:CDS | 35.0% | |
| AGAAAATGGGATGTTGAGAA+AGG | + | tig0022476:2036-2055 | Msa1400680:CDS | 35.0% | |
| ! | ATAGGCTGGTAATTTAGAAC+TGG | + | tig0022476:2211-2230 | Msa1400680:intron | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | + | tig0022476:2510-2529 | Msa1400680:intron | 35.0% | |
| ! | GTTTTCCTTCACTTCTTTGT+TGG | + | tig0022476:2663-2682 | Msa1400680:intron | 35.0% |
| !!! | TCCTCTGTGTATAGTTTTGT+GGG | + | tig0022476:2776-2795 | Msa1400680:intron | 35.0% |
| ! | TTTGCTTCATTTTACTGACC+TGG | - | tig0022476:2898-2917 | None:intergenic | 35.0% |
| GCTTAATAAGATACCGATAC+CGG | - | tig0022476:2958-2977 | None:intergenic | 35.0% | |
| TGAGAAGCAAACTGAAAAAC+AGG | - | tig0022476:3010-3029 | None:intergenic | 35.0% | |
| ! | AGTTTGCTTCTCATACTTCT+TGG | + | tig0022476:3017-3036 | Msa1400680:CDS | 35.0% |
| GTTTGCTTCTCATACTTCTT+GGG | + | tig0022476:3018-3037 | Msa1400680:CDS | 35.0% | |
| CTGCAAGGAACATAAGTTAT+TGG | - | tig0022476:3203-3222 | None:intergenic | 35.0% | |
| ATAACTTATGTTCCTTGCAG+TGG | + | tig0022476:3203-3222 | Msa1400680:intron | 35.0% | |
| TGAGATTCAATGGTTGAAAG+AGG | - | tig0022476:3229-3248 | None:intergenic | 35.0% | |
| CATTGTCAAATAGCAGTTAG+TGG | + | tig0022476:3394-3413 | Msa1400680:intron | 35.0% | |
| TCGCTAATCGCAGAAAATAA+CGG | - | tig0022476:3456-3475 | None:intergenic | 35.0% | |
| ! | ACATCTTTGATTTACCCAAG+AGG | + | tig0022476:3513-3532 | Msa1400680:intron | 35.0% |
| AAAAGTGACAGTGTTATCAG+TGG | + | tig0022476:3603-3622 | Msa1400680:CDS | 35.0% | |
| ! | TAGCTACTGCTTCTAAAGAC+CGG | + | tig0022476:906-925 | Msa1400680:CDS | 40.0% |
| AGAGCTTACAAAATCTTGCG+TGG | + | tig0022476:1090-1109 | Msa1400680:CDS | 40.0% | |
| AGCACAGACTAATGGAGAAA+TGG | + | tig0022476:1140-1159 | Msa1400680:CDS | 40.0% | |
| ! | TCACATGATCAGGTTTGTTC+TGG | + | tig0022476:1245-1264 | Msa1400680:intron | 40.0% |
| !! | ATCAGGTTTGTTCTGGTTCT+TGG | + | tig0022476:1252-1271 | Msa1400680:intron | 40.0% |
| !! | TCAGGTTTGTTCTGGTTCTT+GGG | + | tig0022476:1253-1272 | Msa1400680:intron | 40.0% |
| TCTCAATTAGAGGTTCGTAC+AGG | + | tig0022476:1368-1387 | Msa1400680:intron | 40.0% | |
| GTGCTGCATGAAAAAACAAG+GGG | - | tig0022476:1616-1635 | None:intergenic | 40.0% | |
| ! | GGTGCTGCATGAAAAAACAA+GGG | - | tig0022476:1617-1636 | None:intergenic | 40.0% |
| !! | TGGTGCTGCATGAAAAAACA+AGG | - | tig0022476:1618-1637 | None:intergenic | 40.0% |
| TTATTTGCGTGCAAATAGGC+TGG | + | tig0022476:2197-2216 | Msa1400680:intron | 40.0% | |
| TGAGCTTAGCTCAGTTGTTA+AGG | + | tig0022476:2483-2502 | Msa1400680:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | + | tig0022476:2511-2530 | Msa1400680:intron | 40.0% | |
| !! | GTCCTCTGTGTATAGTTTTG+TGG | + | tig0022476:2775-2794 | Msa1400680:intron | 40.0% |
| TCCCACAAAACTATACACAG+AGG | - | tig0022476:2780-2799 | None:intergenic | 40.0% | |
| !!! | CTGTGTATAGTTTTGTGGGA+AGG | + | tig0022476:2780-2799 | Msa1400680:intron | 40.0% |
| ACAATCATGTATGCCGGTAT+CGG | + | tig0022476:2942-2961 | Msa1400680:intron | 40.0% | |
| CTTGGGTTACAACTGTCAAA+TGG | + | tig0022476:3035-3054 | Msa1400680:CDS | 40.0% | |
| CTTGTCACTGTGAGATTCAA+TGG | - | tig0022476:3239-3258 | None:intergenic | 40.0% | |
| CATTGAATCTCACAGTGACA+AGG | + | tig0022476:3237-3256 | Msa1400680:intron | 40.0% | |
| ! | TCTTTGATTTACCCAAGAGG+AGG | + | tig0022476:3516-3535 | Msa1400680:intron | 40.0% |
| !! | TTTGAAGCCAATTTTGTCCG+AGG | + | tig0022476:3705-3724 | Msa1400680:three_prime_UTR | 40.0% |
| AACACTAATATTGGGTGCCT+CGG | - | tig0022476:3725-3744 | None:intergenic | 40.0% | |
| ! | AGGACTTCAATCTGAAGTGT+CGG | - | tig0022476:3763-3782 | None:intergenic | 40.0% |
| ATTGATCACATTCTGACACC+AGG | - | tig0022476:3783-3802 | None:intergenic | 40.0% | |
| ! | CTTCTAAAGACCGGACACTA+AGG | + | tig0022476:915-934 | Msa1400680:CDS | 45.0% |
| GCACAGCAAACTCAACAAGT+GGG | - | tig0022476:1587-1606 | None:intergenic | 45.0% | |
| AGCACAGCAAACTCAACAAG+TGG | - | tig0022476:1588-1607 | None:intergenic | 45.0% | |
| TGTTTGTACTGCTGGAAGTC+TGG | + | tig0022476:1700-1719 | Msa1400680:intron | 45.0% | |
| ! | GAAGCTTTTACAACCCTCGT+AGG | + | tig0022476:1937-1956 | Msa1400680:CDS | 45.0% |
| AGTGCGTGTCTTCTGTGATT+TGG | + | tig0022476:1968-1987 | Msa1400680:CDS | 45.0% | |
| GGTTCATAACAGGACCAACT+AGG | - | tig0022476:2426-2445 | None:intergenic | 45.0% | |
| ACAACTGAGCTAAGCTCACA+GGG | - | tig0022476:2481-2500 | None:intergenic | 45.0% | |
| AACAACTGAGCTAAGCTCAC+AGG | - | tig0022476:2482-2501 | None:intergenic | 45.0% | |
| !!! | ACTGATTTTTTGGTGGTGGC+CGG | - | tig0022476:2545-2564 | None:intergenic | 45.0% |
| GTTTCACTCACACTTGATCG+AGG | + | tig0022476:2615-2634 | Msa1400680:intron | 45.0% | |
| TTAACTGCCTCGACATTGGA+GGG | + | tig0022476:2806-2825 | Msa1400680:CDS | 45.0% | |
| AGGATCCCAAATCCTAACGA+CGG | - | tig0022476:2869-2888 | None:intergenic | 45.0% | |
| ! | TTTTACTGACCTGGCTTACG+AGG | - | tig0022476:2889-2908 | None:intergenic | 45.0% |
| GATTGTCTACGGAGGTTAGA+GGG | - | tig0022476:2928-2947 | None:intergenic | 45.0% | |
| TGATTGTCTACGGAGGTTAG+AGG | - | tig0022476:2929-2948 | None:intergenic | 45.0% | |
| GCATACATGATTGTCTACGG+AGG | - | tig0022476:2936-2955 | None:intergenic | 45.0% | |
| CCGGCATACATGATTGTCTA+CGG | - | tig0022476:2939-2958 | None:intergenic | 45.0% | |
| CCGTAGACAATCATGTATGC+CGG | + | tig0022476:2936-2955 | Msa1400680:intron | 45.0% | |
| GTTATGGGATCTGAGAACTG+CGG | + | tig0022476:3111-3130 | Msa1400680:CDS | 45.0% | |
| ACCCAAGAGGAGGACTAAAA+TGG | + | tig0022476:3526-3545 | Msa1400680:intron | 45.0% | |
| !! | GCCATTTTAGTCCTCCTCTT+GGG | - | tig0022476:3530-3549 | None:intergenic | 45.0% |
| AGTGACAGTGTTATCAGTGG+TGG | + | tig0022476:3606-3625 | Msa1400680:CDS | 45.0% | |
| !! | CTGAAGTGTCGGTGTTACAT+AGG | - | tig0022476:3752-3771 | None:intergenic | 45.0% |
| GACACTTCAGATTGAAGTCC+TGG | + | tig0022476:3762-3781 | Msa1400680:three_prime_UTR | 45.0% | |
| !! | TAATTTAATATAAAAATGAT+AGG | - | tig0022476:2447-2466 | None:intergenic | 5.0% |
| AAGACCGGACACTAAGGCTA+TGG | + | tig0022476:921-940 | Msa1400680:CDS | 50.0% | |
| ! | CCTTCCATAGCCTTAGTGTC+CGG | - | tig0022476:928-947 | None:intergenic | 50.0% |
| ! | TTGTAAGCTCTAACCCTCGC+AGG | - | tig0022476:1081-1100 | None:intergenic | 50.0% |
| AGCGTTGCAGCACAGACTAA+TGG | + | tig0022476:1132-1151 | Msa1400680:CDS | 50.0% | |
| CTGATCATGTGAGACAGCAG+AGG | - | tig0022476:1237-1256 | None:intergenic | 50.0% | |
| CTCTGCTGTCTCACATGATC+AGG | + | tig0022476:1235-1254 | Msa1400680:intron | 50.0% | |
| GGGATTGCACCATCAACCTA+TGG | + | tig0022476:1273-1292 | Msa1400680:CDS | 50.0% | |
| GCTACTATCAACGACCCCTT+AGG | - | tig0022476:1502-1521 | None:intergenic | 50.0% | |
| CAGAAGACACGCACTGTGTA+TGG | - | tig0022476:1963-1982 | None:intergenic | 50.0% | |
| !!! | TGATTTTTTGGTGGTGGCCG+GGG | - | tig0022476:2543-2562 | None:intergenic | 50.0% |
| !!! | CTGATTTTTTGGTGGTGGCC+GGG | - | tig0022476:2544-2563 | None:intergenic | 50.0% |
| GCTCTTAACTGCCTCGACAT+TGG | + | tig0022476:2802-2821 | Msa1400680:CDS | 50.0% | |
| CTTAACTGCCTCGACATTGG+AGG | + | tig0022476:2805-2824 | Msa1400680:CDS | 50.0% | |
| TAACTGCCTCGACATTGGAG+GGG | + | tig0022476:2807-2826 | Msa1400680:CDS | 50.0% | |
| AACTTTCCCCTCCAATGTCG+AGG | - | tig0022476:2816-2835 | None:intergenic | 50.0% | |
| AGTTCTGCTCTGATAGCTGC+CGG | + | tig0022476:2832-2851 | Msa1400680:CDS | 50.0% | |
| TGACCCCGTCGTTAGGATTT+GGG | + | tig0022476:2861-2880 | Msa1400680:CDS | 50.0% | |
| GATCCCAAATCCTAACGACG+GGG | - | tig0022476:2867-2886 | None:intergenic | 50.0% | |
| GGATCCCAAATCCTAACGAC+GGG | - | tig0022476:2868-2887 | None:intergenic | 50.0% | |
| ! | ATTTGGGATCCTCGTAAGCC+AGG | + | tig0022476:2877-2896 | Msa1400680:CDS | 50.0% |
| !! | GGCCATTTTAGTCCTCCTCT+TGG | - | tig0022476:3531-3550 | None:intergenic | 50.0% |
| CGACGTGTACATCACTGTAC+AGG | - | tig0022476:3666-3685 | None:intergenic | 50.0% | |
| TTGGGTGCCTCGGACAAAAT+TGG | - | tig0022476:3715-3734 | None:intergenic | 50.0% | |
| CCGGACACTAAGGCTATGGA+AGG | + | tig0022476:925-944 | Msa1400680:CDS | 55.0% | |
| !! | AGGATGGTTGGTAGCCTCCT+CGG | - | tig0022476:1061-1080 | None:intergenic | 55.0% |
| TCTAACCCTCGCAGGATGGT+TGG | - | tig0022476:1073-1092 | None:intergenic | 55.0% | |
| ! | AAGCTCTAACCCTCGCAGGA+TGG | - | tig0022476:1077-1096 | None:intergenic | 55.0% |
| GCACTGTGTATGGCCTACGA+GGG | - | tig0022476:1953-1972 | None:intergenic | 55.0% | |
| TGACAAAGCACGGACGAGCA+AGG | - | tig0022476:2172-2191 | None:intergenic | 55.0% | |
| CTGACCCCGTCGTTAGGATT+TGG | + | tig0022476:2860-2879 | Msa1400680:CDS | 55.0% | |
| GGTTGAAAGAGGCCACTGCA+AGG | - | tig0022476:3218-3237 | None:intergenic | 55.0% | |
| ! | CTCAGGTACTGTGTGCTGAC+TGG | + | tig0022476:3577-3596 | Msa1400680:intron | 55.0% |
| !! | AGGTACTGTGTGCTGACTGG+TGG | + | tig0022476:3580-3599 | Msa1400680:intron | 55.0% |
| AGGCTACCAACCATCCTGCG+AGG | + | tig0022476:1064-1083 | Msa1400680:CDS | 60.0% | |
| GGCTACCAACCATCCTGCGA+GGG | + | tig0022476:1065-1084 | Msa1400680:CDS | 60.0% | |
| CGCACTGTGTATGGCCTACG+AGG | - | tig0022476:1954-1973 | None:intergenic | 60.0% | |
| CAAGGTCCGGGTTCAAACCC+CGG | + | tig0022476:2523-2542 | Msa1400680:intron | 60.0% | |
| TCTGCTCTGATAGCTGCCGG+TGG | + | tig0022476:2835-2854 | Msa1400680:CDS | 60.0% | |
| AACGACGGGGTCAGAACCAC+CGG | - | tig0022476:2854-2873 | None:intergenic | 60.0% | |
| !! | GTGGTTCTGACCCCGTCGTT+AGG | + | tig0022476:2854-2873 | Msa1400680:CDS | 60.0% |
| GGCACGCTAGCATTGTTGCG+TGG | + | tig0022476:3415-3434 | Msa1400680:intron | 60.0% | |
| TGGTGGCCGGGGTTTGAACC+CGG | - | tig0022476:2532-2551 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022476 | gene | 890 | 3941 | 890 | ID=Msa1400680;Name=Msa1400680 |
| tig0022476 | mRNA | 890 | 3941 | 890 | ID=Msa1400680-mRNA-1;Parent=Msa1400680;Name=Msa1400680-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.33|0.42|1|1|1|7|267|257 |
| tig0022476 | exon | 890 | 946 | 890 | ID=Msa1400680-mRNA-1:exon:17819;Parent=Msa1400680-mRNA-1 |
| tig0022476 | exon | 1051 | 1161 | 1051 | ID=Msa1400680-mRNA-1:exon:17820;Parent=Msa1400680-mRNA-1 |
| tig0022476 | exon | 1257 | 1379 | 1257 | ID=Msa1400680-mRNA-1:exon:17821;Parent=Msa1400680-mRNA-1 |
| tig0022476 | exon | 1934 | 2077 | 1934 | ID=Msa1400680-mRNA-1:exon:17822;Parent=Msa1400680-mRNA-1 |
| tig0022476 | exon | 2790 | 2898 | 2790 | ID=Msa1400680-mRNA-1:exon:17823;Parent=Msa1400680-mRNA-1 |
| tig0022476 | exon | 2996 | 3132 | 2996 | ID=Msa1400680-mRNA-1:exon:17824;Parent=Msa1400680-mRNA-1 |
| tig0022476 | exon | 3582 | 3941 | 3582 | ID=Msa1400680-mRNA-1:exon:17825;Parent=Msa1400680-mRNA-1 |
| tig0022476 | CDS | 890 | 946 | 890 | ID=Msa1400680-mRNA-1:cds;Parent=Msa1400680-mRNA-1 |
| tig0022476 | CDS | 1051 | 1161 | 1051 | ID=Msa1400680-mRNA-1:cds;Parent=Msa1400680-mRNA-1 |
| tig0022476 | CDS | 1257 | 1379 | 1257 | ID=Msa1400680-mRNA-1:cds;Parent=Msa1400680-mRNA-1 |
| tig0022476 | CDS | 1934 | 2077 | 1934 | ID=Msa1400680-mRNA-1:cds;Parent=Msa1400680-mRNA-1 |
| tig0022476 | CDS | 2790 | 2898 | 2790 | ID=Msa1400680-mRNA-1:cds;Parent=Msa1400680-mRNA-1 |
| tig0022476 | CDS | 2996 | 3132 | 2996 | ID=Msa1400680-mRNA-1:cds;Parent=Msa1400680-mRNA-1 |
| tig0022476 | CDS | 3582 | 3674 | 3582 | ID=Msa1400680-mRNA-1:cds;Parent=Msa1400680-mRNA-1 |
| tig0022476 | three_prime_UTR | 3675 | 3941 | 3675 | ID=Msa1400680-mRNA-1:three_prime_utr;Parent=Msa1400680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
