AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211820 MtrunA17_Chr4g0060621 99.248 266 1 1 1 265 1 266 0.0 520
Msa1211820 MtrunA17_Chr3g0092521 78.281 221 45 1 1 218 1 221 9.42e-127 360
Msa1211820 MtrunA17_Chr4g0064221 62.868 272 81 5 5 265 105 367 7.19e-107 314
Msa1211820 MtrunA17_Chr6g0487861 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1211820 MtrunA17_Chr6g0487691 48.810 84 42 1 57 139 2 85 4.63e-25 95.1
Msa1211820 MtrunA17_Chr6g0487501 39.496 119 59 2 100 206 38 155 3.06e-20 84.7
Msa1211820 MtrunA17_Chr2g0299501 27.957 186 103 4 5 160 30 214 1.01e-12 67.4
Msa1211820 MtrunA17_Chr2g0330141 27.568 185 102 4 7 160 30 213 3.50e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211820 AT1G18800.1 72.851 221 57 3 1 218 1 221 5.40e-112 323
Msa1211820 AT1G74560.1 73.171 205 53 2 17 219 22 226 4.57e-108 313
Msa1211820 AT1G74560.3 73.333 195 50 2 17 209 22 216 3.01e-102 298
Msa1211820 AT2G19480.2 26.380 163 91 3 26 160 55 216 9.78e-11 62.0
Msa1211820 AT2G19480.1 26.380 163 91 3 26 160 55 216 9.93e-11 62.0

Find 100 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGACCATGGCCTTTCTTTC+AGG 0.071837 8_1:-71576295 Msa1211820:three_prime_UTR
TCAAATCTATTCCTGATTTC+TGG 0.142000 8_1:-71580366 Msa1211820:CDS
GGTATATTAGCTTTCTCTTT+TGG 0.151187 8_1:-71576145 Msa1211820:three_prime_UTR
TTCGGTGAGTTTCTGCTTCT+TGG 0.176469 8_1:+71580686 None:intergenic
GAGCTTTATGCATAACTTTC+CGG 0.206346 8_1:-71575999 Msa1211820:three_prime_UTR
TTGAGTATGTATTAGGCTTT+TGG 0.206492 8_1:-71576323 Msa1211820:three_prime_UTR
TTGGGTATCTTAGCATAAAA+AGG 0.247822 8_1:-71576075 Msa1211820:three_prime_UTR
ACAGGGTAATTGATAAATTA+TGG 0.281625 8_1:+71576218 None:intergenic
TGCATGATTATAATTTATAT+TGG 0.287040 8_1:-71575960 Msa1211820:three_prime_UTR
AATTAATCAAGGATGATTTA+TGG 0.308424 8_1:-71577232 Msa1211820:CDS
TCTTGAGGTTGAAGATAATA+AGG 0.335371 8_1:-71579772 Msa1211820:CDS
TGAAAACGCGAAAGGGTGTT+AGG 0.338957 8_1:+71580791 None:intergenic
AGCTTTATGCATAACTTTCC+GGG 0.343191 8_1:-71575998 Msa1211820:three_prime_UTR
GATAATAAGGATGTCAAATC+TGG 0.344818 8_1:-71579759 Msa1211820:CDS
TACTGCATTTACTAGCCGTT+TGG 0.353047 8_1:-71576094 Msa1211820:three_prime_UTR
AGTTCAGCATCAACTTCTTC+GGG 0.365326 8_1:+71580660 None:intergenic
CTTCTCATGATTGTCGCCAT+TGG 0.369583 8_1:+71578744 None:intergenic
GAGTTCAGCATCAACTTCTT+CGG 0.373422 8_1:+71580659 None:intergenic
ATGAATGCAGTTTCCTTAGT+TGG 0.378489 8_1:-71577471 Msa1211820:intron
TTCTCATGATTGTCGCCATT+GGG 0.394389 8_1:+71578745 None:intergenic
AGGCAATTGAAAATGCATTA+TGG 0.398971 8_1:-71576372 Msa1211820:exon
TCCGACTATAGTTAACTTGC+GGG 0.399219 8_1:+71576025 None:intergenic
ACTGCATTTACTAGCCGTTT+GGG 0.400007 8_1:-71576093 Msa1211820:three_prime_UTR
TGAATCCTCAAAATAGGGAT+TGG 0.404769 8_1:+71579517 None:intergenic
AGTTGATGAAGAAGAGAAAA+GGG 0.406437 8_1:+71580763 None:intergenic
AGACCATGGCCTTTCTTTCA+GGG 0.412109 8_1:-71576294 Msa1211820:three_prime_UTR
GAATCCTCAAAATAGGGATT+GGG 0.412238 8_1:+71579518 None:intergenic
GTTCTGTCTCCAACCATCTT+CGG 0.412928 8_1:+71580708 None:intergenic
GACACCAACCTGACATCAAC+AGG 0.420723 8_1:+71578703 None:intergenic
TCTCTGTTGTTCCTTCTTCA+CGG 0.428176 8_1:+71579471 None:intergenic
AAGTTGATGAAGAAGAGAAA+AGG 0.436613 8_1:+71580762 None:intergenic
ACTAGAAGAAATTACTTGAC+AGG 0.444435 8_1:+71576200 None:intergenic
ACAGCATTCAACCAGAAATC+AGG 0.453818 8_1:+71580355 None:intergenic
TCATCGGCATCCTCTTCATC+AGG 0.453926 8_1:+71577054 None:intergenic
ATGGTCGGAGAACCACTAAC+TGG 0.454059 8_1:+71576237 None:intergenic
TCGTTCCGCTTATCGTAAAC+CGG 0.454701 8_1:+71580394 None:intergenic
GAGTTAATGCCCTGAAAGAA+AGG 0.464958 8_1:+71576285 None:intergenic
ATGAGAAGAAAGGGAACAAA+AGG 0.469606 8_1:-71578729 Msa1211820:CDS
AGATGTTGATATTCGCCATC+GGG 0.470851 8_1:-71575916 Msa1211820:three_prime_UTR
CTGTGAGCAGAAAGATGATA+TGG 0.473510 8_1:-71577440 Msa1211820:CDS
GGCGACAATCATGAGAAGAA+AGG 0.484157 8_1:-71578739 Msa1211820:CDS
ATCTAAATTCTAACAGAGGA+TGG 0.486341 8_1:+71575935 None:intergenic
AAAGGCCTCCTGTTGATGTC+AGG 0.487205 8_1:-71578711 Msa1211820:intron
AGCAGAAGTATAATGAGATT+AGG 0.487313 8_1:-71580420 Msa1211820:CDS
CACAGTCACAAAACCAACTA+AGG 0.487948 8_1:+71577458 None:intergenic
GCATTTATGTTTCAGTTGCC+CGG 0.499065 8_1:+71575980 None:intergenic
GCAGCTTGCAGAATTAATCA+AGG 0.516175 8_1:-71577243 Msa1211820:intron
GTATAATGAGATTAGGAAGC+CGG 0.518765 8_1:-71580413 Msa1211820:CDS
TGTTGTTCCTTCTTCACGGA+AGG 0.521205 8_1:+71579475 None:intergenic
ACACAGAGGCGAACCGAAGA+TGG 0.523143 8_1:-71580721 Msa1211820:exon
GAGCTACACAAGCCAGTTAG+TGG 0.523204 8_1:-71576249 Msa1211820:three_prime_UTR
TCTAAATTCTAACAGAGGAT+GGG 0.525688 8_1:+71575936 None:intergenic
GCGACAATCATGAGAAGAAA+GGG 0.529007 8_1:-71578738 Msa1211820:CDS
TAATGATGAAGCGAGTGATA+AGG 0.530659 8_1:-71580455 Msa1211820:CDS
TGAAGCTGATGATGAGGTAA+TGG 0.532222 8_1:-71577031 Msa1211820:CDS
GAAAACGCGAAAGGGTGTTA+GGG 0.538787 8_1:+71580792 None:intergenic
GATCCAAGATGACCTCGAAA+AGG 0.540267 8_1:-71580610 Msa1211820:intron
TATCACTAAAATTGCACGAT+GGG 0.540851 8_1:+71576173 None:intergenic
CTCATTCAGTAGTTCACTGA+GGG 0.542426 8_1:+71580206 None:intergenic
TTCCGACTATAGTTAACTTG+CGG 0.542706 8_1:+71576024 None:intergenic
TGACGAAGAGGGTGATGATG+AGG 0.543527 8_1:-71576396 Msa1211820:CDS
CTCTTCTTCATCAACTTCCG+CGG 0.546448 8_1:-71580756 Msa1211820:five_prime_UTR
CTCATCATCAGCTTCATCAT+CGG 0.555556 8_1:+71577038 None:intergenic
CAAGTATTTGAGTTCTCTTG+AGG 0.559002 8_1:-71579787 Msa1211820:CDS
GATCTCTTGCAATTTCTCGA+TGG 0.566477 8_1:+71580629 None:intergenic
TCCCGCAAGTTAACTATAGT+CGG 0.568159 8_1:-71576026 Msa1211820:three_prime_UTR
GTAGTTCACTGAGGGTAGGA+TGG 0.569898 8_1:+71580214 None:intergenic
CCTCAGTGAACTACTGAATG+AGG 0.570986 8_1:-71580205 Msa1211820:CDS
ACAGGAGGAGCCTGATGAAG+AGG 0.571562 8_1:-71577064 Msa1211820:intron
CTAAATTCTAACAGAGGATG+GGG 0.571769 8_1:+71575937 None:intergenic
TAGATGTTGATATTCGCCAT+CGG 0.578538 8_1:-71575917 Msa1211820:three_prime_UTR
AGAGGCGAACCGAAGATGGT+TGG 0.579592 8_1:-71580717 Msa1211820:exon
TTGATGAAGAAGAGAAAAGG+GGG 0.580034 8_1:+71580765 None:intergenic
CATAAAATGGAAAGAAGGCA+AGG 0.587844 8_1:-71579435 Msa1211820:intron
CAAGTTAACTATAGTCGGAA+AGG 0.588633 8_1:-71576021 Msa1211820:three_prime_UTR
TTTATGCTAAGATACCCAAA+CGG 0.589342 8_1:+71576079 None:intergenic
ATGCCCTGAAAGAAAGGCCA+TGG 0.592269 8_1:+71576291 None:intergenic
CTTGCAATTTCTCGATGGAG+AGG 0.599246 8_1:+71580634 None:intergenic
AGACGAGGACGACTCTGAAG+AGG 0.603159 8_1:-71576420 Msa1211820:CDS
CTAGAAGAAATTACTTGACA+GGG 0.603479 8_1:+71576201 None:intergenic
GGAAGCCGGTTTACGATAAG+CGG 0.605546 8_1:-71580399 Msa1211820:CDS
CATTAACTCATGTCAGCAAG+TGG 0.610410 8_1:-71576271 Msa1211820:three_prime_UTR
GGTAATTGATAAATTATGGT+CGG 0.611413 8_1:+71576222 None:intergenic
TGATGAAGAAGAGAAAAGGG+GGG 0.614299 8_1:+71580766 None:intergenic
GTTGATGAAGAAGAGAAAAG+GGG 0.614369 8_1:+71580764 None:intergenic
CTCTGAAGAGGATGACGAAG+AGG 0.619244 8_1:-71576408 Msa1211820:CDS
TCTGAAGAGGATGACGAAGA+GGG 0.630726 8_1:-71576407 Msa1211820:CDS
TTCAGTAGTTCACTGAGGGT+AGG 0.637147 8_1:+71580210 None:intergenic
GAAGAGGGTGATGATGAGGA+AGG 0.646490 8_1:-71576392 Msa1211820:CDS
CAACATCTAAATTCTAACAG+AGG 0.650545 8_1:+71575931 None:intergenic
GACTATAGTTAACTTGCGGG+AGG 0.653498 8_1:+71576028 None:intergenic
TACATGTAGGGAATACCCAA+TGG 0.655765 8_1:-71578760 Msa1211820:intron
CGATGATGAAGCTGATGATG+AGG 0.673202 8_1:-71577037 Msa1211820:CDS
ACACTGTTGAAATAAATGAG+TGG 0.676235 8_1:+71577203 None:intergenic
CCTCATTCAGTAGTTCACTG+AGG 0.684849 8_1:+71580205 None:intergenic
ACCAACCTGACATCAACAGG+AGG 0.699036 8_1:+71578706 None:intergenic
GTATCACTAAAATTGCACGA+TGG 0.702616 8_1:+71576172 None:intergenic
GGCAATCTTCACTCACACAG+AGG 0.721891 8_1:-71580735 Msa1211820:five_prime_UTR
TATGGCTGACATTCACGACG+AGG 0.776284 8_1:-71577422 Msa1211820:intron
TGTGTGAGTGAAGATTGCCG+CGG 0.840253 8_1:+71580739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTATCAAATAAAAAAT+TGG + chr8_1:71576891-71576910 None:intergenic 10.0%
!! ATTAAATATATGATAGTTTA+AGG - chr8_1:71577739-71577758 Msa1211820:intron 10.0%
!! TTAAATATATGATAGTTTAA+GGG - chr8_1:71577740-71577759 Msa1211820:intron 10.0%
!! AAATGTTAATATAAAGAATA+TGG - chr8_1:71579956-71579975 Msa1211820:intron 10.0%
!! CTTCAATTGAATAAAAAAAA+CGG + chr8_1:71576117-71576136 None:intergenic 15.0%
!!! ATTGTGTTTTAATAATTATG+TGG - chr8_1:71576194-71576213 Msa1211820:three_prime_UTR 15.0%
!! AAAAATTATAAATGCTGATA+GGG + chr8_1:71577316-71577335 None:intergenic 15.0%
!! TAAAAATTATAAATGCTGAT+AGG + chr8_1:71577317-71577336 None:intergenic 15.0%
!! TCAACAACAAAAAATATATA+AGG + chr8_1:71577816-71577835 None:intergenic 15.0%
!!! CATTTTGTATAAACATATAA+AGG + chr8_1:71578120-71578139 None:intergenic 15.0%
!!! AAATGTTTTTTTACATGAAA+GGG + chr8_1:71578989-71579008 None:intergenic 15.0%
!!! AAAATGTTTTTTTACATGAA+AGG + chr8_1:71578990-71579009 None:intergenic 15.0%
!!! TTCACATTATTTATTGTTTT+CGG + chr8_1:71580061-71580080 None:intergenic 15.0%
!! TGTTTGTCATTAATTTAAAA+TGG + chr8_1:71580210-71580229 None:intergenic 15.0%
!! TGCATGATTATAATTTATAT+TGG - chr8_1:71580739-71580758 Msa1211820:five_prime_UTR 15.0%
!! AACACAATTCAAATCAAATT+AGG + chr8_1:71576182-71576201 None:intergenic 20.0%
!! AAAATTATAAATGCTGATAG+GGG + chr8_1:71577315-71577334 None:intergenic 20.0%
!!! ATAAATCATAAGTTTCAAGT+AGG - chr8_1:71577484-71577503 Msa1211820:intron 20.0%
!!! TAAATCATAAGTTTCAAGTA+GGG - chr8_1:71577485-71577504 Msa1211820:intron 20.0%
!! TGATTAGAAATACAATCATT+AGG - chr8_1:71577669-71577688 Msa1211820:intron 20.0%
!!! AATCCTTTTAAAGTAGATTT+AGG + chr8_1:71578392-71578411 None:intergenic 20.0%
!! ATTTGCAAATGAAAATACTT+TGG + chr8_1:71578612-71578631 None:intergenic 20.0%
!! TTTGAGAAATATGTTGTTAA+AGG - chr8_1:71579140-71579159 Msa1211820:intron 20.0%
!! AGTGAATTGAATATTATACA+AGG + chr8_1:71579431-71579450 None:intergenic 20.0%
!! AATTAATCAAGGATGATTTA+TGG - chr8_1:71579467-71579486 Msa1211820:CDS 20.0%
!! AAAATGACAAATAATGCATT+TGG + chr8_1:71579562-71579581 None:intergenic 20.0%
!!! TCTATTTTTTCCAAGAAAAA+CGG + chr8_1:71579699-71579718 None:intergenic 20.0%
!! TATTGCTCATAATAATTGTT+TGG - chr8_1:71579743-71579762 Msa1211820:CDS 20.0%
!! TGAAAATTATGAATTCAGTA+TGG + chr8_1:71579788-71579807 None:intergenic 20.0%
!! TTAATCCTAAACATTGTTAA+AGG - chr8_1:71580151-71580170 Msa1211820:intron 20.0%
!! CTCAAACCAAAAAAATAAAA+AGG + chr8_1:71580361-71580380 None:intergenic 20.0%
! ATTATTTGATCCACCAAATT+AGG - chr8_1:71576152-71576171 Msa1211820:three_prime_UTR 25.0%
! CAAATTAGGTTAACCTAATT+TGG + chr8_1:71576166-71576185 None:intergenic 25.0%
!!! TTCTGTGGAAGTATTTTTTA+AGG - chr8_1:71576631-71576650 Msa1211820:intron 25.0%
! CATGAAAGAACATAATAAGT+GGG + chr8_1:71576791-71576810 None:intergenic 25.0%
! ACATGAAAGAACATAATAAG+TGG + chr8_1:71576792-71576811 None:intergenic 25.0%
! CTTCATTGCAATGAAAAATA+TGG - chr8_1:71577048-71577067 Msa1211820:CDS 25.0%
!!! AACCAAATGTTGATTTTCTA+CGG - chr8_1:71577116-71577135 Msa1211820:intron 25.0%
!!! AGTTTTGAATCCTCAAAATA+GGG + chr8_1:71577190-71577209 None:intergenic 25.0%
!!! AAGTTTTGAATCCTCAAAAT+AGG + chr8_1:71577191-71577210 None:intergenic 25.0%
! GATTTGAAAAAGTTTCACAT+TGG + chr8_1:71577361-71577380 None:intergenic 25.0%
!!! TTTTTCAAATCTACATGACA+TGG - chr8_1:71577370-71577389 Msa1211820:intron 25.0%
! AATCTGTAAATCTCACAATT+TGG + chr8_1:71577776-71577795 None:intergenic 25.0%
! TTGTGAGATTTACAGATTAA+TGG - chr8_1:71577778-71577797 Msa1211820:intron 25.0%
! GTTAGTAAAATACAACAACA+AGG + chr8_1:71577907-71577926 None:intergenic 25.0%
! ACATAATCCTTATACATGTA+GGG - chr8_1:71577927-71577946 Msa1211820:intron 25.0%
! GTTTATACAAAATGAACTTC+TGG - chr8_1:71578126-71578145 Msa1211820:intron 25.0%
! TTTATTGATGTCCTAATTGA+CGG + chr8_1:71578208-71578227 None:intergenic 25.0%
! TCAATTAGGACATCAATAAA+GGG - chr8_1:71578208-71578227 Msa1211820:intron 25.0%
! AAAAAAGGAAAAGAGGAATT+TGG + chr8_1:71578268-71578287 None:intergenic 25.0%
! ACTGAAAAGAAGAAGAAAAA+AGG + chr8_1:71578283-71578302 None:intergenic 25.0%
! ATGCCTAAATCTACTTTAAA+AGG - chr8_1:71578386-71578405 Msa1211820:intron 25.0%
! ACTTTGGTATTGTTAAATAG+CGG + chr8_1:71578596-71578615 None:intergenic 25.0%
! TTCATTTGCAAATAATTGAC+TGG - chr8_1:71578619-71578638 Msa1211820:intron 25.0%
! ACAATTGATCAAATTTCTCT+TGG + chr8_1:71578727-71578746 None:intergenic 25.0%
! TGATCAATTGTATACTTGAT+TGG - chr8_1:71578736-71578755 Msa1211820:CDS 25.0%
!!! TTTTTTACATGAAAGGGTTT+TGG + chr8_1:71578983-71579002 None:intergenic 25.0%
!! GTTTTTCTTGGAAAAAATAG+AGG - chr8_1:71579698-71579717 Msa1211820:intron 25.0%
!! AGGTGATTAACAAAAGTTTT+TGG - chr8_1:71579718-71579737 Msa1211820:intron 25.0%
!! GGTGATTAACAAAAGTTTTT+GGG - chr8_1:71579719-71579738 Msa1211820:intron 25.0%
! TTCAATTAAAGAGTTTGATG+CGG - chr8_1:71579804-71579823 Msa1211820:intron 25.0%
! AAGAATATGGAACTATAAGT+TGG - chr8_1:71579969-71579988 Msa1211820:intron 25.0%
! TCATTCTAACTTAAAGCTTT+AGG + chr8_1:71580028-71580047 None:intergenic 25.0%
! TGATAACCTCAAAAAAAACT+TGG - chr8_1:71580104-71580123 Msa1211820:intron 25.0%
! TAGATCCTTTAACAATGTTT+AGG + chr8_1:71580159-71580178 None:intergenic 25.0%
! AAATAATATTTCTTGTTCGC+AGG - chr8_1:71580252-71580271 Msa1211820:intron 25.0%
!!! GTGTGACCTTTTTATTTTTT+TGG - chr8_1:71580352-71580371 Msa1211820:intron 25.0%
!!! TTTTGGTTTGAGTATGTATT+AGG - chr8_1:71580369-71580388 Msa1211820:CDS 25.0%
! GGTAATTGATAAATTATGGT+CGG + chr8_1:71580480-71580499 None:intergenic 25.0%
! ACAGGGTAATTGATAAATTA+TGG + chr8_1:71580484-71580503 None:intergenic 25.0%
!!! GTATATTAGCTTTCTCTTTT+GGG - chr8_1:71580555-71580574 Msa1211820:intron 25.0%
!! AGTTGATGAAGAAGAGAAAA+GGG + chr8_1:71575939-71575958 None:intergenic 30.0%
!! AAGTTGATGAAGAAGAGAAA+AGG + chr8_1:71575940-71575959 None:intergenic 30.0%
ATTAGGTTAACCTAATTTGG+TGG + chr8_1:71576165-71576184 None:intergenic 30.0%
! AGCAGAAGTATAATGAGATT+AGG - chr8_1:71576279-71576298 Msa1211820:three_prime_UTR 30.0%
TCAAATCTATTCCTGATTTC+TGG - chr8_1:71576333-71576352 Msa1211820:three_prime_UTR 30.0%
!! TTGGTTTGTTTGTATGATTC+TGG - chr8_1:71576593-71576612 Msa1211820:intron 30.0%
! GTATGATTCTGGAAATTACT+CGG - chr8_1:71576604-71576623 Msa1211820:intron 30.0%
TACTTTGATTCCATGGAAAA+TGG + chr8_1:71576709-71576728 None:intergenic 30.0%
GTGATATTACTTTGATTCCA+TGG + chr8_1:71576716-71576735 None:intergenic 30.0%
!!! GGTTTTGTTCCTTTGATTAA+CGG - chr8_1:71576839-71576858 Msa1211820:intron 30.0%
TCTTGAGGTTGAAGATAATA+AGG - chr8_1:71576927-71576946 Msa1211820:intron 30.0%
GATAATAAGGATGTCAAATC+TGG - chr8_1:71576940-71576959 Msa1211820:intron 30.0%
CAAATACTTGTACAAAGAAG+AGG + chr8_1:71577021-71577040 None:intergenic 30.0%
TCTGAACATGAAATGATTAC+TGG + chr8_1:71577153-71577172 None:intergenic 30.0%
! TTGCCTTCTTTCCATTTTAT+GGG + chr8_1:71577265-71577284 None:intergenic 30.0%
!! CTTAAACTTGCTAAAAGTAG+AGG - chr8_1:71577398-71577417 Msa1211820:intron 30.0%
TGAGTGATACTTTACTATTG+CGG + chr8_1:71577537-71577556 None:intergenic 30.0%
AAAGTTACCCCACAATTAAA+AGG - chr8_1:71577568-71577587 Msa1211820:intron 30.0%
!! ATTACAGGCCTTTTAATTGT+GGG + chr8_1:71577579-71577598 None:intergenic 30.0%
AAGACATCTAGAAGAACAAA+TGG - chr8_1:71577702-71577721 Msa1211820:intron 30.0%
AGACATCTAGAAGAACAAAT+GGG - chr8_1:71577703-71577722 Msa1211820:intron 30.0%
TCTGTCGAAAAAAAAGAAGA+AGG + chr8_1:71577876-71577895 None:intergenic 30.0%
!!! TTCTTCTTTTTTTTCGACAG+AGG - chr8_1:71577875-71577894 Msa1211820:intron 30.0%
CACATAATCCTTATACATGT+AGG - chr8_1:71577926-71577945 Msa1211820:intron 30.0%
ACTAATATGCATCATGAACA+TGG + chr8_1:71578077-71578096 None:intergenic 30.0%
! TATTAGTTTCCACTTGTTCT+TGG - chr8_1:71578090-71578109 Msa1211820:intron 30.0%
GTCAATTAGGACATCAATAA+AGG - chr8_1:71578207-71578226 Msa1211820:intron 30.0%
AAACAAGCATCACTAATCAA+GGG + chr8_1:71578234-71578253 None:intergenic 30.0%
AAAACAAGCATCACTAATCA+AGG + chr8_1:71578235-71578254 None:intergenic 30.0%
! TTGATTAGTGATGCTTGTTT+TGG - chr8_1:71578234-71578253 Msa1211820:intron 30.0%
GAAGAAGAAAAAAGGAAAAG+AGG + chr8_1:71578275-71578294 None:intergenic 30.0%
TTTATTCCAATATGACCAAG+CGG - chr8_1:71578307-71578326 Msa1211820:intron 30.0%
CATAACACAATACAATACAG+AGG - chr8_1:71578363-71578382 Msa1211820:intron 30.0%
TATCTCCGTCAATTATTTGA+CGG - chr8_1:71578663-71578682 Msa1211820:intron 30.0%
TCAATTGTATACTTGATTGG+AGG - chr8_1:71578739-71578758 Msa1211820:CDS 30.0%
!!! TGGTACCAATTTTTTCCAAT+AGG - chr8_1:71578797-71578816 Msa1211820:intron 30.0%
!! CAAATATGAAGGTGGTTTTA+AGG + chr8_1:71579078-71579097 None:intergenic 30.0%
TAAAACCACCTTCATATTTG+AGG - chr8_1:71579078-71579097 Msa1211820:intron 30.0%
TCATTAGCACAAGAAATCAA+AGG + chr8_1:71579212-71579231 None:intergenic 30.0%
ACACTGTTGAAATAAATGAG+TGG + chr8_1:71579499-71579518 None:intergenic 30.0%
AGCTACAGTTAGAAACATAA+TGG + chr8_1:71579603-71579622 None:intergenic 30.0%
GTAGCTGATTGTAATATAAC+AGG - chr8_1:71579617-71579636 Msa1211820:intron 30.0%
AAAAAGTTATGCATTCAGCA+TGG + chr8_1:71579850-71579869 None:intergenic 30.0%
TGAAAATTAAAGTTCGGTTC+AGG + chr8_1:71579911-71579930 None:intergenic 30.0%
CGCGAATGAAAATTAAAGTT+CGG + chr8_1:71579917-71579936 None:intergenic 30.0%
! TTAATTTTCATTCGCGATCT+AGG - chr8_1:71579921-71579940 Msa1211820:intron 30.0%
!!! AACTTGCCAAGTTTTTTTTG+AGG + chr8_1:71580113-71580132 None:intergenic 30.0%
ATTAATGACAAACACAGCTT+TGG - chr8_1:71580216-71580235 Msa1211820:CDS 30.0%
AGGCAATTGAAAATGCATTA+TGG - chr8_1:71580327-71580346 Msa1211820:intron 30.0%
! TTGAGTATGTATTAGGCTTT+TGG - chr8_1:71580376-71580395 Msa1211820:CDS 30.0%
! TGAGTATGTATTAGGCTTTT+GGG - chr8_1:71580377-71580396 Msa1211820:CDS 30.0%
CTAGAAGAAATTACTTGACA+GGG + chr8_1:71580501-71580520 None:intergenic 30.0%
ACTAGAAGAAATTACTTGAC+AGG + chr8_1:71580502-71580521 None:intergenic 30.0%
TATCACTAAAATTGCACGAT+GGG + chr8_1:71580529-71580548 None:intergenic 30.0%
!! TGCAATTTTAGTGATACTCA+TGG - chr8_1:71580533-71580552 Msa1211820:intron 30.0%
!!! GGTATATTAGCTTTCTCTTT+TGG - chr8_1:71580554-71580573 Msa1211820:intron 30.0%
TTTATGCTAAGATACCCAAA+CGG + chr8_1:71580623-71580642 None:intergenic 30.0%
TTGGGTATCTTAGCATAAAA+AGG - chr8_1:71580624-71580643 Msa1211820:CDS 30.0%
TCTAAATTCTAACAGAGGAT+GGG + chr8_1:71580766-71580785 None:intergenic 30.0%
ATCTAAATTCTAACAGAGGA+TGG + chr8_1:71580767-71580786 None:intergenic 30.0%
CAACATCTAAATTCTAACAG+AGG + chr8_1:71580771-71580790 None:intergenic 30.0%
TTGATGAAGAAGAGAAAAGG+GGG + chr8_1:71575937-71575956 None:intergenic 35.0%
! GTTGATGAAGAAGAGAAAAG+GGG + chr8_1:71575938-71575957 None:intergenic 35.0%
! ATCAACTTCTTCGGGATTTT+CGG + chr8_1:71576034-71576053 None:intergenic 35.0%
! AAAAAAACGGTACCTTTTCG+AGG + chr8_1:71576104-71576123 None:intergenic 35.0%
TAATGATGAAGCGAGTGATA+AGG - chr8_1:71576244-71576263 Msa1211820:three_prime_UTR 35.0%
GTATAATGAGATTAGGAAGC+CGG - chr8_1:71576286-71576305 Msa1211820:three_prime_UTR 35.0%
! GTTTTCCATGTTGTTACGTT+TGG - chr8_1:71576574-71576593 Msa1211820:intron 35.0%
ACAAACCAAACGTAACAACA+TGG + chr8_1:71576582-71576601 None:intergenic 35.0%
! AAAACGAAACGGAATGGTTT+TGG - chr8_1:71576678-71576697 Msa1211820:intron 35.0%
!! TTTGGTTTCACCATTTTCCA+TGG - chr8_1:71576696-71576715 Msa1211820:intron 35.0%
AAACCTAGCAATTGTTCAGA+AGG + chr8_1:71576824-71576843 None:intergenic 35.0%
CTTTGATTAACGGTTCTGTT+GGG - chr8_1:71576849-71576868 Msa1211820:intron 35.0%
! CAAGTATTTGAGTTCTCTTG+AGG - chr8_1:71576912-71576931 Msa1211820:intron 35.0%
AGAAAAAGGGCAACTTACAA+GGG + chr8_1:71576977-71576996 None:intergenic 35.0%
! AAGAGGAGTTTTCAGAAGAA+GGG + chr8_1:71577004-71577023 None:intergenic 35.0%
GTCCGTAGAAAATCAACATT+TGG + chr8_1:71577121-71577140 None:intergenic 35.0%
GAATCCTCAAAATAGGGATT+GGG + chr8_1:71577184-71577203 None:intergenic 35.0%
TGAATCCTCAAAATAGGGAT+TGG + chr8_1:71577185-71577204 None:intergenic 35.0%
! TGCCTTCTTTCCATTTTATG+GGG + chr8_1:71577264-71577283 None:intergenic 35.0%
! CTTGCCTTCTTTCCATTTTA+TGG + chr8_1:71577266-71577285 None:intergenic 35.0%
CATAAAATGGAAAGAAGGCA+AGG - chr8_1:71577264-71577283 Msa1211820:intron 35.0%
! AAAGTATCACTCAAGTTTGC+AGG - chr8_1:71577544-71577563 Msa1211820:intron 35.0%
!! TTACAGGCCTTTTAATTGTG+GGG + chr8_1:71577578-71577597 None:intergenic 35.0%
!! CATTACAGGCCTTTTAATTG+TGG + chr8_1:71577580-71577599 None:intergenic 35.0%
ACAGATTCACACAACATTAC+AGG + chr8_1:71577594-71577613 None:intergenic 35.0%
TTGTGTGAATCTGTTCACTT+GGG - chr8_1:71577600-71577619 Msa1211820:intron 35.0%
GACATCTAGAAGAACAAATG+GGG - chr8_1:71577704-71577723 Msa1211820:intron 35.0%
GATAGTTTAAGGGAAACTGT+TGG - chr8_1:71577750-71577769 Msa1211820:intron 35.0%
TTGTTGAGTGATCCATATAG+TGG - chr8_1:71577829-71577848 Msa1211820:intron 35.0%
ATGAGAAGAAAGGGAACAAA+AGG - chr8_1:71577970-71577989 Msa1211820:intron 35.0%
! TTTGTTATCATGGACAAAGC+TGG + chr8_1:71578166-71578185 None:intergenic 35.0%
!! AACTCGTGAGTTTGTTATCA+TGG + chr8_1:71578176-71578195 None:intergenic 35.0%
TTATAATCCTGCCGTCAATT+AGG - chr8_1:71578194-71578213 Msa1211820:intron 35.0%
! ATCCCACAGTTTGATGATTA+CGG - chr8_1:71578418-71578437 Msa1211820:intron 35.0%
ATCCGTAATCATCAAACTGT+GGG + chr8_1:71578423-71578442 None:intergenic 35.0%
TATCCGTAATCATCAAACTG+TGG + chr8_1:71578424-71578443 None:intergenic 35.0%
! TAGTAATGGGAAAGTTGTTC+AGG + chr8_1:71578472-71578491 None:intergenic 35.0%
TCCATAGCAACGATAGTAAT+GGG + chr8_1:71578485-71578504 None:intergenic 35.0%
TTCCATAGCAACGATAGTAA+TGG + chr8_1:71578486-71578505 None:intergenic 35.0%
GCGAAAGAATCATATTGTAG+TGG - chr8_1:71578530-71578549 Msa1211820:intron 35.0%
TGACGGAGATAATTCTTCAA+AGG + chr8_1:71578654-71578673 None:intergenic 35.0%
TGTATACTTGATTGGAGGTT+TGG - chr8_1:71578744-71578763 Msa1211820:CDS 35.0%
GTATACTTGATTGGAGGTTT+GGG - chr8_1:71578745-71578764 Msa1211820:CDS 35.0%
AGGGACCTATTGGAAAAAAT+TGG + chr8_1:71578805-71578824 None:intergenic 35.0%
!! GTGAAAAGTATTGACCTTTC+AGG - chr8_1:71578909-71578928 Msa1211820:intron 35.0%
! TAAAGGCTTAAAGCTCCTTT+TGG - chr8_1:71579157-71579176 Msa1211820:intron 35.0%
! TTCAATGAAGCGTTTCCAAA+AGG + chr8_1:71579175-71579194 None:intergenic 35.0%
GAAACGCTTCATTGAACAAA+TGG - chr8_1:71579179-71579198 Msa1211820:intron 35.0%
ATGAATGCAGTTTCCTTAGT+TGG - chr8_1:71579228-71579247 Msa1211820:intron 35.0%
AGAAACTACTTGAGAAGAAC+AGG + chr8_1:71579316-71579335 None:intergenic 35.0%
GCTGATTGTAATATAACAGG+AGG - chr8_1:71579620-71579639 Msa1211820:intron 35.0%
!! AATGGAAGTTCCGTTTTTCT+TGG - chr8_1:71579686-71579705 Msa1211820:intron 35.0%
GTATCACTAAAATTGCACGA+TGG + chr8_1:71580530-71580549 None:intergenic 35.0%
! TTCCGACTATAGTTAACTTG+CGG + chr8_1:71580678-71580697 None:intergenic 35.0%
CAAGTTAACTATAGTCGGAA+AGG - chr8_1:71580678-71580697 Msa1211820:CDS 35.0%
! GAGCTTTATGCATAACTTTC+CGG - chr8_1:71580700-71580719 Msa1211820:CDS 35.0%
! AGCTTTATGCATAACTTTCC+GGG - chr8_1:71580701-71580720 Msa1211820:CDS 35.0%
CTAAATTCTAACAGAGGATG+GGG + chr8_1:71580765-71580784 None:intergenic 35.0%
TAGATGTTGATATTCGCCAT+CGG - chr8_1:71580782-71580801 Msa1211820:five_prime_UTR 35.0%
TGATGAAGAAGAGAAAAGGG+GGG + chr8_1:71575936-71575955 None:intergenic 40.0%
AGTTCAGCATCAACTTCTTC+GGG + chr8_1:71576042-71576061 None:intergenic 40.0%
GAGTTCAGCATCAACTTCTT+CGG + chr8_1:71576043-71576062 None:intergenic 40.0%
GATCTCTTGCAATTTCTCGA+TGG + chr8_1:71576073-71576092 None:intergenic 40.0%
ACAGCATTCAACCAGAAATC+AGG + chr8_1:71576347-71576366 None:intergenic 40.0%
CTCATTCAGTAGTTCACTGA+GGG + chr8_1:71576496-71576515 None:intergenic 40.0%
TTGCCTTCTGAACAATTGCT+AGG - chr8_1:71576818-71576837 Msa1211820:intron 40.0%
CCAACAGAACCGTTAATCAA+AGG + chr8_1:71576851-71576870 None:intergenic 40.0%
CCTTTGATTAACGGTTCTGT+TGG - chr8_1:71576848-71576867 Msa1211820:intron 40.0%
GAGAAAAAGGGCAACTTACA+AGG + chr8_1:71576978-71576997 None:intergenic 40.0%
GAAGAAGGGGAAGAGAAAAA+GGG + chr8_1:71576990-71577009 None:intergenic 40.0%
AGAAGAAGGGGAAGAGAAAA+AGG + chr8_1:71576991-71577010 None:intergenic 40.0%
! AGAGGAGTTTTCAGAAGAAG+GGG + chr8_1:71577003-71577022 None:intergenic 40.0%
! GAAGAGGAGTTTTCAGAAGA+AGG + chr8_1:71577005-71577024 None:intergenic 40.0%
! CAATCCCAATCCCTATTTTG+AGG - chr8_1:71577177-71577196 Msa1211820:intron 40.0%
! ACTTTTACCTTCCGTGAAGA+AGG - chr8_1:71577217-71577236 Msa1211820:CDS 40.0%
TCTCTGTTGTTCCTTCTTCA+CGG + chr8_1:71577231-71577250 None:intergenic 40.0%
ACCCCCATAAAATGGAAAGA+AGG - chr8_1:71577259-71577278 Msa1211820:intron 40.0%
! GCCTTCTTTCCATTTTATGG+GGG + chr8_1:71577263-71577282 None:intergenic 40.0%
AATGGAAAGAAGGCAAGGTA+AGG - chr8_1:71577269-71577288 Msa1211820:intron 40.0%
ATGGAAAGAAGGCAAGGTAA+GGG - chr8_1:71577270-71577289 Msa1211820:intron 40.0%
! TTTTCCCTATGCATCTCATC+AGG + chr8_1:71577444-71577463 None:intergenic 40.0%
GAGATGCATAGGGAAAATAG+TGG - chr8_1:71577447-71577466 Msa1211820:CDS 40.0%
GTTGTGTGAATCTGTTCACT+TGG - chr8_1:71577599-71577618 Msa1211820:intron 40.0%
TGTGTGAATCTGTTCACTTG+GGG - chr8_1:71577601-71577620 Msa1211820:intron 40.0%
ATCTAGAAGAACAAATGGGG+AGG - chr8_1:71577707-71577726 Msa1211820:intron 40.0%
TCTAGAAGAACAAATGGGGA+GGG - chr8_1:71577708-71577727 Msa1211820:intron 40.0%
! AGGTCTTTTACCATGAGCTT+GGG + chr8_1:71577856-71577875 None:intergenic 40.0%
! AAGGTCTTTTACCATGAGCT+TGG + chr8_1:71577857-71577876 None:intergenic 40.0%
GGGTATTCCCTACATGTATA+AGG + chr8_1:71577937-71577956 None:intergenic 40.0%
TACATGTAGGGAATACCCAA+TGG - chr8_1:71577939-71577958 Msa1211820:intron 40.0%
TTCTCATGATTGTCGCCATT+GGG + chr8_1:71577957-71577976 None:intergenic 40.0%
GCGACAATCATGAGAAGAAA+GGG - chr8_1:71577961-71577980 Msa1211820:intron 40.0%
!! GAAAGTTGTTCAGGTTGTTG+AGG + chr8_1:71578463-71578482 None:intergenic 40.0%
TCCCATTACTATCGTTGCTA+TGG - chr8_1:71578481-71578500 Msa1211820:intron 40.0%
TTTCGCTATCAGTGCAATAG+CGG + chr8_1:71578516-71578535 None:intergenic 40.0%
TCCGTCAATTATTTGACGGA+TGG - chr8_1:71578667-71578686 Msa1211820:intron 40.0%
GCCATCCGTCAAATAATTGA+CGG + chr8_1:71578671-71578690 None:intergenic 40.0%
TGAATCCACCCGTCAAATAT+GGG + chr8_1:71578694-71578713 None:intergenic 40.0%
TTGAATCCACCCGTCAAATA+TGG + chr8_1:71578695-71578714 None:intergenic 40.0%
! TATTTGACGGGTGGATTCAA+TGG - chr8_1:71578695-71578714 Msa1211820:intron 40.0%
!! ATGGTGGATGTTTAAGAGTC+TGG - chr8_1:71578777-71578796 Msa1211820:intron 40.0%
! GCAAAGCACACAAGTTTTAC+TGG + chr8_1:71578829-71578848 None:intergenic 40.0%
GAGACTGCTCTTGACAATAT+GGG + chr8_1:71578862-71578881 None:intergenic 40.0%
AGAGACTGCTCTTGACAATA+TGG + chr8_1:71578863-71578882 None:intergenic 40.0%
!! TGGAAGAGTATCTTTATGCC+TGG - chr8_1:71578938-71578957 Msa1211820:intron 40.0%
AGCAAGACAGAGAGTAAAGT+AGG - chr8_1:71579031-71579050 Msa1211820:intron 40.0%
TCTGTCCTCAAATATGAAGG+TGG + chr8_1:71579086-71579105 None:intergenic 40.0%
GCTTCTGTCCTCAAATATGA+AGG + chr8_1:71579089-71579108 None:intergenic 40.0%
CACAGTCACAAAACCAACTA+AGG + chr8_1:71579244-71579263 None:intergenic 40.0%
CTGTGAGCAGAAAGATGATA+TGG - chr8_1:71579259-71579278 Msa1211820:intron 40.0%
ACACGTGGAAAACAAAGACA+GGG + chr8_1:71579351-71579370 None:intergenic 40.0%
ATTAGTCAAGTAGAGACACG+TGG + chr8_1:71579366-71579385 None:intergenic 40.0%
GCAGCTTGCAGAATTAATCA+AGG - chr8_1:71579456-71579475 Msa1211820:CDS 40.0%
CTCATCATCAGCTTCATCAT+CGG + chr8_1:71579664-71579683 None:intergenic 40.0%
! TGAAGCTGATGATGAGGTAA+TGG - chr8_1:71579668-71579687 Msa1211820:intron 40.0%
GAGTTAATGCCCTGAAAGAA+AGG + chr8_1:71580417-71580436 None:intergenic 40.0%
CATTAACTCATGTCAGCAAG+TGG - chr8_1:71580428-71580447 Msa1211820:CDS 40.0%
TACTGCATTTACTAGCCGTT+TGG - chr8_1:71580605-71580624 Msa1211820:intron 40.0%
ACTGCATTTACTAGCCGTTT+GGG - chr8_1:71580606-71580625 Msa1211820:intron 40.0%
TCCCGCAAGTTAACTATAGT+CGG - chr8_1:71580673-71580692 Msa1211820:CDS 40.0%
!! TCCGACTATAGTTAACTTGC+GGG + chr8_1:71580677-71580696 None:intergenic 40.0%
GCATTTATGTTTCAGTTGCC+CGG + chr8_1:71580722-71580741 None:intergenic 40.0%
AGATGTTGATATTCGCCATC+GGG - chr8_1:71580783-71580802 Msa1211820:five_prime_UTR 40.0%
!! GAAAACGCGAAAGGGTGTTA+GGG + chr8_1:71575910-71575929 None:intergenic 45.0%
!! TGAAAACGCGAAAGGGTGTT+AGG + chr8_1:71575911-71575930 None:intergenic 45.0%
CTCTTCTTCATCAACTTCCG+CGG - chr8_1:71575943-71575962 Msa1211820:three_prime_UTR 45.0%
GTTCTGTCTCCAACCATCTT+CGG + chr8_1:71575994-71576013 None:intergenic 45.0%
TTCGGTGAGTTTCTGCTTCT+TGG + chr8_1:71576016-71576035 None:intergenic 45.0%
CTTGCAATTTCTCGATGGAG+AGG + chr8_1:71576068-71576087 None:intergenic 45.0%
GATCCAAGATGACCTCGAAA+AGG - chr8_1:71576089-71576108 Msa1211820:three_prime_UTR 45.0%
!! GTACCTTTTCGAGGTCATCT+TGG + chr8_1:71576095-71576114 None:intergenic 45.0%
TCGTTCCGCTTATCGTAAAC+CGG + chr8_1:71576308-71576327 None:intergenic 45.0%
TTCAGTAGTTCACTGAGGGT+AGG + chr8_1:71576492-71576511 None:intergenic 45.0%
CCTCATTCAGTAGTTCACTG+AGG + chr8_1:71576497-71576516 None:intergenic 45.0%
CCTCAGTGAACTACTGAATG+AGG - chr8_1:71576494-71576513 Msa1211820:intron 45.0%
AAATTACTCGGCGTGTTCTG+TGG - chr8_1:71576616-71576635 Msa1211820:intron 45.0%
GTGGACAAAACGAAACGGAA+TGG - chr8_1:71576672-71576691 Msa1211820:intron 45.0%
TGTTGTTCCTTCTTCACGGA+AGG + chr8_1:71577227-71577246 None:intergenic 45.0%
TCACTGCTACCCCCATAAAA+TGG - chr8_1:71577251-71577270 Msa1211820:intron 45.0%
TCGAACCTGATGAGATGCAT+AGG - chr8_1:71577436-71577455 Msa1211820:CDS 45.0%
CGAACCTGATGAGATGCATA+GGG - chr8_1:71577437-71577456 Msa1211820:CDS 45.0%
GTGTGAATCTGTTCACTTGG+GGG - chr8_1:71577602-71577621 Msa1211820:intron 45.0%
ATGAGCTTGGGTCCACTATA+TGG + chr8_1:71577844-71577863 None:intergenic 45.0%
!! ATATAGTGGACCCAAGCTCA+TGG - chr8_1:71577843-71577862 Msa1211820:intron 45.0%
CTTCTCATGATTGTCGCCAT+TGG + chr8_1:71577958-71577977 None:intergenic 45.0%
GGCGACAATCATGAGAAGAA+AGG - chr8_1:71577960-71577979 Msa1211820:intron 45.0%
AAAGGTCAGCCAAGAACAAG+TGG + chr8_1:71578102-71578121 None:intergenic 45.0%
TTGATGTCCTAATTGACGGC+AGG + chr8_1:71578204-71578223 None:intergenic 45.0%
TTCCAATATGACCAAGCGGA+AGG - chr8_1:71578311-71578330 Msa1211820:intron 45.0%
TACCTTCCGCTTGGTCATAT+TGG + chr8_1:71578316-71578335 None:intergenic 45.0%
ATATGACCAAGCGGAAGGTA+AGG - chr8_1:71578316-71578335 Msa1211820:intron 45.0%
ATATGTCCTTACCTTCCGCT+TGG + chr8_1:71578325-71578344 None:intergenic 45.0%
AGCGGAAGGTAAGGACATAT+TGG - chr8_1:71578325-71578344 Msa1211820:intron 45.0%
GCGGAAGGTAAGGACATATT+GGG - chr8_1:71578326-71578345 Msa1211820:intron 45.0%
!! TTGTTCAGGTTGTTGAGGTC+TGG + chr8_1:71578458-71578477 None:intergenic 45.0%
GAATCCACCCGTCAAATATG+GGG + chr8_1:71578693-71578712 None:intergenic 45.0%
! TTGATTGGAGGTTTGGGATC+AGG - chr8_1:71578751-71578770 Msa1211820:CDS 45.0%
! TGATTGGAGGTTTGGGATCA+GGG - chr8_1:71578752-71578771 Msa1211820:CDS 45.0%
! TTTTACTGGCAGGGACCTAT+TGG + chr8_1:71578815-71578834 None:intergenic 45.0%
! GCACACAAGTTTTACTGGCA+GGG + chr8_1:71578824-71578843 None:intergenic 45.0%
! AGCACACAAGTTTTACTGGC+AGG + chr8_1:71578825-71578844 None:intergenic 45.0%
ATTGACCTTTCAGGAGTCGA+TGG - chr8_1:71578918-71578937 Msa1211820:intron 45.0%
! AGAGTATCTTTATGCCTGGC+TGG - chr8_1:71578942-71578961 Msa1211820:intron 45.0%
GACACGTGGAAAACAAAGAC+AGG + chr8_1:71579352-71579371 None:intergenic 45.0%
! CGATGATGAAGCTGATGATG+AGG - chr8_1:71579662-71579681 Msa1211820:intron 45.0%
CTTCTAGCAGCGATTTCTGA+AGG - chr8_1:71579884-71579903 Msa1211820:intron 45.0%
TTGTTCGCAGGAAAAAGACG+AGG - chr8_1:71580264-71580283 Msa1211820:intron 45.0%
TCTGAAGAGGATGACGAAGA+GGG - chr8_1:71580292-71580311 Msa1211820:intron 45.0%
AGACCATGGCCTTTCTTTCA+GGG - chr8_1:71580405-71580424 Msa1211820:CDS 45.0%
!! GACTATAGTTAACTTGCGGG+AGG + chr8_1:71580674-71580693 None:intergenic 45.0%
GGGGGAATGAAAACGCGAAA+GGG + chr8_1:71575918-71575937 None:intergenic 50.0%
TGTGTGAGTGAAGATTGCCG+CGG + chr8_1:71575963-71575982 None:intergenic 50.0%
GGCAATCTTCACTCACACAG+AGG - chr8_1:71575964-71575983 Msa1211820:three_prime_UTR 50.0%
! GGAAGCCGGTTTACGATAAG+CGG - chr8_1:71576300-71576319 Msa1211820:three_prime_UTR 50.0%
GTAGTTCACTGAGGGTAGGA+TGG + chr8_1:71576488-71576507 None:intergenic 50.0%
!!! GTAGTAGTTTTGACCCAGCG+TGG - chr8_1:71576653-71576672 Msa1211820:intron 50.0%
! CGTTTCGTTTTGTCCACGCT+GGG + chr8_1:71576669-71576688 None:intergenic 50.0%
CCAGCGTGGACAAAACGAAA+CGG - chr8_1:71576667-71576686 Msa1211820:intron 50.0%
GAAGAACAAATGGGGAGGGT+TGG - chr8_1:71577712-71577731 Msa1211820:intron 50.0%
AAAGGCCTCCTGTTGATGTC+AGG - chr8_1:71577988-71578007 Msa1211820:intron 50.0%
ACCAACCTGACATCAACAGG+AGG + chr8_1:71577996-71578015 None:intergenic 50.0%
GACACCAACCTGACATCAAC+AGG + chr8_1:71577999-71578018 None:intergenic 50.0%
CATGGACAAAGCTGGAGAGT+GGG + chr8_1:71578158-71578177 None:intergenic 50.0%
TCATGGACAAAGCTGGAGAG+TGG + chr8_1:71578159-71578178 None:intergenic 50.0%
! GTTGAGGTCTGGAACGAACA+GGG + chr8_1:71578447-71578466 None:intergenic 50.0%
! TGTTGAGGTCTGGAACGAAC+AGG + chr8_1:71578448-71578467 None:intergenic 50.0%
! ATAGCGGAGCTATTGTGTCG+CGG + chr8_1:71578580-71578599 None:intergenic 50.0%
ACGGATGGCCCCATATTTGA+CGG - chr8_1:71578682-71578701 Msa1211820:intron 50.0%
! GATTGGAGGTTTGGGATCAG+GGG - chr8_1:71578753-71578772 Msa1211820:CDS 50.0%
!! CTCTTCCATCGACTCCTGAA+AGG + chr8_1:71578926-71578945 None:intergenic 50.0%
TATGGCTGACATTCACGACG+AGG - chr8_1:71579277-71579296 Msa1211820:intron 50.0%
TCATCGGCATCCTCTTCATC+AGG + chr8_1:71579648-71579667 None:intergenic 50.0%
TGCGGTGATACTGTGCATAC+TGG - chr8_1:71579822-71579841 Msa1211820:intron 50.0%
! CTCTGAAGAGGATGACGAAG+AGG - chr8_1:71580291-71580310 Msa1211820:intron 50.0%
! TGACGAAGAGGGTGATGATG+AGG - chr8_1:71580303-71580322 Msa1211820:intron 50.0%
! GAAGAGGGTGATGATGAGGA+AGG - chr8_1:71580307-71580326 Msa1211820:intron 50.0%
CAGACCATGGCCTTTCTTTC+AGG - chr8_1:71580404-71580423 Msa1211820:CDS 50.0%
ATGCCCTGAAAGAAAGGCCA+TGG + chr8_1:71580411-71580430 None:intergenic 50.0%
GAGCTACACAAGCCAGTTAG+TGG - chr8_1:71580450-71580469 Msa1211820:CDS 50.0%
ATGGTCGGAGAACCACTAAC+TGG + chr8_1:71580465-71580484 None:intergenic 50.0%
GGGGGGAATGAAAACGCGAA+AGG + chr8_1:71575919-71575938 None:intergenic 55.0%
ACACAGAGGCGAACCGAAGA+TGG - chr8_1:71575978-71575997 Msa1211820:three_prime_UTR 55.0%
AGAGGCGAACCGAAGATGGT+TGG - chr8_1:71575982-71576001 Msa1211820:three_prime_UTR 55.0%
! CCGTTTCGTTTTGTCCACGC+TGG + chr8_1:71576670-71576689 None:intergenic 55.0%
ACTTGGGGGTTGCACAAGAC+AGG - chr8_1:71577616-71577635 Msa1211820:intron 55.0%
CTTGGGGGTTGCACAAGACA+GGG - chr8_1:71577617-71577636 Msa1211820:intron 55.0%
GCCTCCTGTTGATGTCAGGT+TGG - chr8_1:71577992-71578011 Msa1211820:intron 55.0%
TAGCGGAGCTATTGTGTCGC+GGG + chr8_1:71578579-71578598 None:intergenic 55.0%
CGGATGGCCCCATATTTGAC+GGG - chr8_1:71578683-71578702 Msa1211820:intron 55.0%
ATGGCCCCATATTTGACGGG+TGG - chr8_1:71578686-71578705 Msa1211820:intron 55.0%
! GAGGTTTGGGATCAGGGGTA+TGG - chr8_1:71578758-71578777 Msa1211820:intron 55.0%
! GTTTGGGATCAGGGGTATGG+TGG - chr8_1:71578761-71578780 Msa1211820:intron 55.0%
AGAGTAATGCACAGCCAGCC+AGG + chr8_1:71578959-71578978 None:intergenic 55.0%
ACAGGAGGAGCCTGATGAAG+AGG - chr8_1:71579635-71579654 Msa1211820:intron 55.0%
! AGACGAGGACGACTCTGAAG+AGG - chr8_1:71580279-71580298 Msa1211820:intron 55.0%
! GCTTTTGGGCGTGCAGACCA+TGG - chr8_1:71580391-71580410 Msa1211820:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 71575902 71580819 71575902 ID=Msa1211820;Name=Msa1211820
chr8_1 mRNA 71575902 71580819 71575902 ID=Msa1211820-mRNA-1;Parent=Msa1211820;Name=Msa1211820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=95|1|1|1|1|1|10|483|265
chr8_1 exon 71575902 71576447 71575902 ID=Msa1211820-mRNA-1:exon:24099;Parent=Msa1211820-mRNA-1
chr8_1 exon 71577002 71577082 71577002 ID=Msa1211820-mRNA-1:exon:24098;Parent=Msa1211820-mRNA-1
chr8_1 exon 71577205 71577261 71577205 ID=Msa1211820-mRNA-1:exon:24097;Parent=Msa1211820-mRNA-1
chr8_1 exon 71577423 71577483 71577423 ID=Msa1211820-mRNA-1:exon:24096;Parent=Msa1211820-mRNA-1
chr8_1 exon 71578712 71578773 71578712 ID=Msa1211820-mRNA-1:exon:24095;Parent=Msa1211820-mRNA-1
chr8_1 exon 71579436 71579549 71579436 ID=Msa1211820-mRNA-1:exon:24094;Parent=Msa1211820-mRNA-1
chr8_1 exon 71579743 71579814 71579743 ID=Msa1211820-mRNA-1:exon:24093;Parent=Msa1211820-mRNA-1
chr8_1 exon 71580194 71580244 71580194 ID=Msa1211820-mRNA-1:exon:24092;Parent=Msa1211820-mRNA-1
chr8_1 exon 71580357 71580479 71580357 ID=Msa1211820-mRNA-1:exon:24091;Parent=Msa1211820-mRNA-1
chr8_1 exon 71580611 71580819 71580611 ID=Msa1211820-mRNA-1:exon:24090;Parent=Msa1211820-mRNA-1
chr8_1 five_prime_UTR 71580725 71580819 71580725 ID=Msa1211820-mRNA-1:five_prime_utr;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71580611 71580724 71580611 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71580357 71580479 71580357 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71580194 71580244 71580194 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71579743 71579814 71579743 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71579436 71579549 71579436 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71578712 71578773 71578712 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71577423 71577483 71577423 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71577205 71577261 71577205 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71577002 71577082 71577002 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 CDS 71576385 71576447 71576385 ID=Msa1211820-mRNA-1:cds;Parent=Msa1211820-mRNA-1
chr8_1 three_prime_UTR 71575902 71576384 71575902 ID=Msa1211820-mRNA-1:three_prime_utr;Parent=Msa1211820-mRNA-1
Gene Sequence

>Msa1211820

ATGGTTGGAGACAGAACCAAGAAGCAGAAACTCACCGAAAATCCCGAAGAAGTTGATGCTGAACTCATCCTCTCCATCGAGAAATTGCAAGAGATCCAAGATGACCTCGAAAAGATTAATGATGAAGCGAGTGATAAGGTTCTCGAAATTGAGCAGAAGTATAATGAGATTAGGAAGCCGGTTTACGATAAGCGGAACGAGATTATCAAATCTATTCCTGATTTCTGGTTGAATGCTTTTTTGAGCCATCCTACCCTCAGTGAACTACTGAATGAGGAAGATCAAAAAATATTCAAGTATTTGAGTTCTCTTGAGGTTGAAGATAATAAGGATGTCAAATCTGGATACACAATCACCCTTAATTTCAATCCCAATCCCTATTTTGAGGATTCAAAACTTTCAAAGACTTTTACCTTCCGTGAAGAAGGAACAACAGAGATCACTGCTACCCCCATAAAATGGAAAGAAGGCAAGGGAATACCCAATGGCGACAATCATGAGAAGAAAGGGAACAAAAGGCCTCCTGTTGATGTCAGTTTCCTTAGTTGGTTTTGTGACTGTGAGCAGAAAGATGATATGGCTGACATTCACGACGAGCTTGCAGAATTAATCAAGGATGATTTATGGTCAAATCCACTCATTTATTTCAACAGTGAGGAGCCTGATGAAGAGGATGCCGATGATGAAGCTGATGATGAGGTAATGGAAGTTCCGTTTTTCTTGGAAAAAATAGAGGAAAAAGACGAGGACGACTCTGAAGAGGATGACGAAGAGGGTGATGATGAGGAAGGCAATTGA

Protein sequence

>Msa1211820

MVGDRTKKQKLTENPEEVDAELILSIEKLQEIQDDLEKINDEASDKVLEIEQKYNEIRKPVYDKRNEIIKSIPDFWLNAFLSHPTLSELLNEEDQKIFKYLSSLEVEDNKDVKSGYTITLNFNPNPYFEDSKLSKTFTFREEGTTEITATPIKWKEGKGIPNGDNHEKKGNKRPPVDVSFLSWFCDCEQKDDMADIHDELAELIKDDLWSNPLIYFNSEEPDEEDADDEADDEVMEVPFFLEKIEEKDEDDSEEDDEEGDDEEGN*