AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1404860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404860 MtrunA17_Chr4g0064681 97.093 344 10 0 1 344 1 344 0.0 699
Msa1404860 MtrunA17_Chr4g0064671 99.602 251 1 0 420 670 9 259 0.0 526
Msa1404860 MtrunA17_Chr1g0149991 63.347 251 74 4 418 665 298 533 1.70e-100 318
Msa1404860 MtrunA17_Chr1g0149991 39.429 350 135 11 10 344 11 298 6.26e-65 224
Msa1404860 MtrunA17_Chr3g0123951 25.673 483 203 15 191 654 15 360 2.19e-29 120
Msa1404860 MtrunA17_Chr4g0074041 33.193 238 102 9 423 656 211 395 2.70e-27 118
Msa1404860 MtrunA17_Chr6g0458441 30.290 241 112 7 423 661 244 430 6.81e-27 116
Msa1404860 MtrunA17_Chr8g0382161 25.311 482 204 16 192 654 16 360 4.74e-26 110
Msa1404860 MtrunA17_Chr6g0458421 29.536 237 111 6 423 657 146 328 1.73e-25 111
Msa1404860 MtrunA17_Chr5g0411271 27.848 237 119 7 423 657 264 450 4.35e-25 110
Msa1404860 MtrunA17_Chr3g0133061 29.268 246 118 6 415 656 695 888 2.57e-24 108
Msa1404860 MtrunA17_Chr6g0458431 29.114 237 112 6 423 657 211 393 3.54e-24 107
Msa1404860 MtrunA17_Chr8g0366721 27.823 248 127 6 412 657 302 499 4.23e-24 107
Msa1404860 MtrunA17_Chr5g0427301 28.205 234 111 7 427 656 665 845 1.30e-20 97.1
Msa1404860 MtrunA17_Chr1g0150541 27.119 236 116 7 423 654 301 484 5.94e-19 91.7
Msa1404860 MtrunA17_Chr7g0255591 28.144 167 95 4 491 654 754 898 6.47e-19 91.7
Msa1404860 MtrunA17_Chr5g0412381 26.068 234 117 5 427 656 545 726 8.14e-19 91.3
Msa1404860 MtrunA17_Chr1g0189101 31.737 167 88 5 491 654 765 908 2.49e-18 89.7
Msa1404860 MtrunA17_Chr1g0189101 33.333 147 70 3 195 341 318 436 2.38e-14 77.0
Msa1404860 MtrunA17_Chr2g0312901 26.496 234 118 5 423 654 145 326 2.66e-18 89.4
Msa1404860 MtrunA17_Chr8g0365831 28.333 240 113 10 426 657 277 465 7.43e-16 80.9
Msa1404860 MtrunA17_Chr2g0313171 25.207 242 123 7 420 656 581 769 8.85e-16 81.6
Msa1404860 MtrunA17_Chr2g0322211 26.506 166 97 4 491 654 717 859 9.94e-16 81.3
Msa1404860 MtrunA17_Chr2g0322211 30.719 153 77 4 195 346 269 393 1.69e-11 67.8
Msa1404860 MtrunA17_Chr1g0170261 27.111 225 108 7 425 642 309 484 5.91e-15 79.0
Msa1404860 MtrunA17_Chr7g0267641 26.667 180 108 5 491 668 791 948 2.12e-14 77.0
Msa1404860 MtrunA17_Chr7g0267641 31.973 147 72 3 195 341 334 452 5.55e-13 72.4
Msa1404860 MtrunA17_Chr4g0062561 30.464 151 77 5 509 657 729 853 2.06e-13 73.9
Msa1404860 MtrunA17_Chr5g0439971 25.561 223 110 7 425 640 312 485 1.50e-12 71.2
Msa1404860 MtrunA17_Chr4g0062491 26.190 168 96 5 496 657 149 294 3.09e-12 68.2
Msa1404860 MtrunA17_Chr3g0119031 25.561 223 110 7 425 640 307 480 9.83e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1404860 AT5G10790.2 56.327 245 99 3 422 663 169 408 1.44e-78 257
Msa1404860 AT5G10790.2 55.556 144 36 2 192 335 43 158 8.68e-44 163
Msa1404860 AT5G10790.1 56.327 245 99 3 422 663 298 537 8.46e-77 256
Msa1404860 AT5G10790.1 41.642 341 139 11 1 335 1 287 5.30e-71 241
Msa1404860 AT4G39910.1 24.845 483 209 17 192 654 16 364 3.32e-29 120
Msa1404860 AT5G57990.1 32.068 237 105 8 423 656 226 409 6.17e-27 117
Msa1404860 AT4G17895.1 28.390 236 116 6 424 657 292 476 6.74e-24 107
Msa1404860 AT2G22310.1 24.516 465 206 13 192 649 16 342 2.10e-23 102
Msa1404860 AT4G24560.1 26.792 265 136 5 398 656 634 846 8.27e-23 104
Msa1404860 AT5G46740.1 29.675 246 119 8 415 657 275 469 1.40e-21 100
Msa1404860 AT5G46740.2 29.675 246 119 8 415 657 66 260 1.60e-21 99.4
Msa1404860 AT2G22310.3 26.693 251 132 4 400 649 111 310 3.95e-21 95.5
Msa1404860 AT2G22310.2 26.693 251 132 4 400 649 106 305 3.99e-21 95.5
Msa1404860 AT2G40930.1 27.488 211 126 6 452 657 728 916 2.31e-20 96.7
Msa1404860 AT2G40930.1 31.034 145 72 3 195 339 315 431 3.61e-12 70.5
Msa1404860 AT2G40930.2 27.488 211 126 6 452 657 728 916 2.31e-20 96.7
Msa1404860 AT2G40930.2 31.034 145 72 3 195 339 315 431 3.61e-12 70.5
Msa1404860 AT4G10590.4 32.934 167 86 4 491 654 748 891 2.05e-19 93.6
Msa1404860 AT4G10590.4 34.694 147 68 4 195 341 301 419 8.18e-14 75.5
Msa1404860 AT4G10590.3 32.934 167 86 4 491 654 748 891 2.05e-19 93.6
Msa1404860 AT4G10590.3 34.694 147 68 4 195 341 301 419 8.18e-14 75.5
Msa1404860 AT4G10590.1 32.934 167 86 4 491 654 748 891 2.05e-19 93.6
Msa1404860 AT4G10590.1 34.694 147 68 4 195 341 301 419 8.18e-14 75.5
Msa1404860 AT4G10590.2 32.934 167 86 4 491 654 748 891 2.05e-19 93.6
Msa1404860 AT4G10590.2 34.694 147 68 4 195 341 301 419 8.18e-14 75.5
Msa1404860 AT4G10570.1 32.934 167 86 4 491 654 749 892 6.48e-19 92.0
Msa1404860 AT4G10570.1 34.694 147 68 4 195 341 302 420 7.06e-14 75.9
Msa1404860 AT4G31670.1 24.576 236 122 6 423 654 288 471 1.24e-18 90.5
Msa1404860 AT5G65450.1 26.538 260 136 6 401 656 424 632 2.91e-18 89.7
Msa1404860 AT5G65450.2 26.538 260 136 6 401 656 443 651 2.93e-18 89.7
Msa1404860 AT2G24640.2 26.724 232 114 7 427 654 128 307 3.64e-18 88.6
Msa1404860 AT2G24640.1 26.271 236 118 7 423 654 294 477 6.92e-18 88.2
Msa1404860 AT5G22030.1 27.711 166 96 4 491 654 723 866 1.31e-17 87.8
Msa1404860 AT3G14400.1 26.068 234 119 5 423 654 151 332 1.62e-17 87.0
Msa1404860 AT5G22030.2 27.711 166 96 4 491 654 765 908 1.66e-17 87.4
Msa1404860 AT1G17110.3 25.207 242 123 7 420 656 555 743 1.79e-17 87.4
Msa1404860 AT1G17110.1 25.207 242 123 7 420 656 555 743 1.79e-17 87.4
Msa1404860 AT1G17110.2 25.207 242 123 7 420 656 559 747 1.94e-17 87.4
Msa1404860 AT1G32850.1 30.508 177 96 5 481 654 725 877 1.53e-15 81.3
Msa1404860 AT1G32850.1 32.886 149 72 3 194 342 298 418 5.74e-14 76.3
Msa1404860 AT5G06600.2 25.541 231 114 8 425 648 306 485 1.42e-11 68.6
Msa1404860 AT5G06600.1 25.541 231 114 8 425 648 307 486 1.45e-11 68.6
Msa1404860 AT3G11910.3 25.110 227 120 8 425 648 306 485 1.53e-11 68.6
Msa1404860 AT3G11910.1 25.110 227 120 8 425 648 306 485 1.53e-11 68.6
Msa1404860 AT3G11910.4 25.110 227 120 8 425 648 305 484 1.54e-11 68.6
Msa1404860 AT3G11910.2 25.110 227 120 8 425 648 305 484 1.54e-11 68.6
Msa1404860 AT5G06600.3 25.541 231 114 8 425 648 307 486 1.78e-11 68.2

Find 223 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTAGGCACTCCAACTTTC+TGG 0.152570 tig0023091:-70439 Msa1404860:three_prime_UTR
AACAAACAGGGTCCTAATTA+TGG 0.209770 tig0023091:+71920 None:intergenic
TGGGCTTCTGATTGAGATTA+AGG 0.213980 tig0023091:+71940 None:intergenic
TGAAATCTGACCGTTGATTT+TGG 0.232505 tig0023091:+74639 None:intergenic
AACACATTCTGAACTGATTC+TGG 0.251190 tig0023091:+71897 None:intergenic
GCGGAGGGAGGCGCGGCCGC+CGG 0.262389 tig0023091:+74528 None:intergenic
ATTTACAAGAGCAGAGAAAT+TGG 0.276376 tig0023091:-71178 Msa1404860:CDS
AAGTTAGATTTCAAGGTCTT+TGG 0.281816 tig0023091:+74713 None:intergenic
CGGAGGGAGGCGCGGCCGCC+GGG 0.289815 tig0023091:+74529 None:intergenic
TTTCATGAATTCGGTGTTGC+AGG 0.290893 tig0023091:-74029 Msa1404860:CDS
GACATTAAATGCCAATGATT+TGG 0.291008 tig0023091:+70641 None:intergenic
ACTCCTGCATAGAGGGAGTA+TGG 0.307132 tig0023091:-71865 Msa1404860:CDS
CAAGAACTTTGCTGGGCTAT+AGG 0.310468 tig0023091:+73781 None:intergenic
TCAATCAGAAGCCCATAATT+AGG 0.315067 tig0023091:-71932 Msa1404860:CDS
AATCAGTTCAGAATGTGTTT+TGG 0.329675 tig0023091:-71893 Msa1404860:CDS
AAACACTTGTTTCATGAATT+CGG 0.335765 tig0023091:-74038 Msa1404860:CDS
GCGATTGTTGTATTGCTCAT+AGG 0.342061 tig0023091:-71416 Msa1404860:CDS
CTTTGGGATATCTACCTTGA+TGG 0.355939 tig0023091:-71214 Msa1404860:CDS
GAAATGCAGGGCGAGGGTTT+AGG 0.356585 tig0023091:-72405 Msa1404860:intron
CTGCTGCGTTTGCCGTGATC+AGG 0.363132 tig0023091:-74311 Msa1404860:CDS
CTTTGATGCTTTGAAAATCA+AGG 0.366229 tig0023091:-70334 Msa1404860:three_prime_UTR
CTATAAAGCAACTGATAAAT+CGG 0.367733 tig0023091:-70692 Msa1404860:CDS
ATTATGCTTAGCTTGTGATA+TGG 0.369132 tig0023091:-73843 Msa1404860:CDS
CACCTGTACAAGAACTTTGC+TGG 0.372135 tig0023091:+73773 None:intergenic
ATCTCTCATCCTCAATCTTA+AGG 0.377114 tig0023091:-70966 Msa1404860:CDS
AACAAGGGGAAGCTTCCTTA+TGG 0.382446 tig0023091:+71092 None:intergenic
TTTACAAGAGCAGAGAAATT+GGG 0.384632 tig0023091:-71177 Msa1404860:CDS
GGTACAAGTGTGATGATTCT+TGG 0.387459 tig0023091:-70789 Msa1404860:CDS
GTTTGATCCGGAGGCAGTTA+TGG 0.388383 tig0023091:+74554 None:intergenic
AGGTAGATATCCCAAAGTTT+TGG 0.392594 tig0023091:+71220 None:intergenic
ATAGCTTGCAAGGTTGGACT+TGG 0.397326 tig0023091:+73487 None:intergenic
CCGATTCCAGCCAAAACTTT+GGG 0.398387 tig0023091:-71230 Msa1404860:CDS
AAACATTGTGAGGGCTGCTC+AGG 0.399967 tig0023091:-70749 Msa1404860:CDS
ATCTACCTTGATGGGGTGCT+TGG 0.401605 tig0023091:-71205 Msa1404860:CDS
GCCGATTCCAGCCAAAACTT+TGG 0.412364 tig0023091:-71231 Msa1404860:CDS
GGTCTCTTGCTTGTTGCCCT+AGG 0.414334 tig0023091:-72384 Msa1404860:CDS
AAGAACTTTGCTGGGCTATA+GGG 0.417867 tig0023091:+73782 None:intergenic
CATAGATCATTTGAAGCATC+AGG 0.419831 tig0023091:+70901 None:intergenic
AGAAGTCATGGCATATCGTT+AGG 0.424302 tig0023091:+70597 None:intergenic
TATGGATTCCTTATAATTTG+TGG 0.426265 tig0023091:-70405 Msa1404860:three_prime_UTR
GCGGTCAGATGTTATGTGTA+TGG 0.427526 tig0023091:-71376 Msa1404860:CDS
CCCTCAAGTTTCCAGAAAGT+TGG 0.428158 tig0023091:+70428 None:intergenic
TTTCTGGAAACTTGAGGGTA+TGG 0.431385 tig0023091:-70423 Msa1404860:three_prime_UTR
GATAGTAAAGTTAGATTTCA+AGG 0.439060 tig0023091:+74706 None:intergenic
GCGAAAGAGGTGGGATGGGA+TGG 0.439510 tig0023091:-74862 Msa1404860:five_prime_UTR
TCCTGAGTGATAAGCATAAT+CGG 0.439582 tig0023091:-73973 Msa1404860:CDS
ACAAACAGGGTCCTAATTAT+GGG 0.446938 tig0023091:+71921 None:intergenic
ATAGCAACTGCGAAAAGAAA+TGG 0.452606 tig0023091:-73893 Msa1404860:CDS
CCTTGCAAGCTATGAACAAC+AGG 0.455682 tig0023091:-73477 Msa1404860:CDS
CTCTCAAGCAGATGTCCATA+AGG 0.460815 tig0023091:-71107 Msa1404860:CDS
AGATTCAGAGTGGGAGGGAA+TGG 0.462664 tig0023091:+74755 None:intergenic
GAACTGATTCTGGAACAAAC+AGG 0.466432 tig0023091:+71907 None:intergenic
CATGTGATGGTCCAAATCAT+TGG 0.468072 tig0023091:-70652 Msa1404860:three_prime_UTR
TTGTTCATAGCTTGCAAGGT+TGG 0.469502 tig0023091:+73481 None:intergenic
TCTGATCAATGTCAACTCCT+AGG 0.472459 tig0023091:+72367 None:intergenic
TGCTATCTCGATGGTGTTAG+CGG 0.473047 tig0023091:-72315 Msa1404860:CDS
AATATAAATACAAATAAAGT+AGG 0.473412 tig0023091:+70277 None:intergenic
ATGGAGGGAGAGGAATGGTT+TGG 0.473439 tig0023091:+74573 None:intergenic
ATCATTGGCATTTAATGTCA+TGG 0.475216 tig0023091:-70637 Msa1404860:three_prime_UTR
TATGTCATCTACTCCGCATC+CGG 0.477988 tig0023091:-74200 Msa1404860:CDS
CGATTGTTGTATTGCTCATA+GGG 0.478514 tig0023091:-71415 Msa1404860:CDS
GGTGACATGTCCAGTGAGAA+TGG 0.480165 tig0023091:+70991 None:intergenic
CAGACCGTTGCGTCCACAAT+CGG 0.485001 tig0023091:-74250 Msa1404860:CDS
TTTGGGATATCTACCTTGAT+GGG 0.487341 tig0023091:-71213 Msa1404860:CDS
CCAACTTTCTGGAAACTTGA+GGG 0.489263 tig0023091:-70428 Msa1404860:three_prime_UTR
GGGCTGCGCTTCACTCAATA+TGG 0.489978 tig0023091:+74805 None:intergenic
CTTGACTTGGAACCAAATCA+AGG 0.491810 tig0023091:-71306 Msa1404860:CDS
TACAGCGGCGCATGAGATGC+AGG 0.492370 tig0023091:+74441 None:intergenic
CGTAGACATCTCACTTGACT+TGG 0.493660 tig0023091:-71319 Msa1404860:CDS
TCAATCTTAAGGAGTCGGTT+TGG 0.493910 tig0023091:-70955 Msa1404860:CDS
GATCACGGCGGAGGGAGGCG+CGG 0.494606 tig0023091:+74521 None:intergenic
TTCAGAGTGGGAGGGAATGG+AGG 0.494827 tig0023091:+74758 None:intergenic
TTTGCAGTTCCCATTCTCAC+TGG 0.494834 tig0023091:-71001 Msa1404860:CDS
GGCAGAATCATCACCATTTG+CGG 0.495711 tig0023091:+73916 None:intergenic
GCTAAGTGGGGACATGGTTG+TGG 0.496744 tig0023091:+74616 None:intergenic
ATGGAGCGAAAGAGGTGGGA+TGG 0.497361 tig0023091:-74867 Msa1404860:five_prime_UTR
AAAGCATCAAAGAGGGGAGG+AGG 0.498976 tig0023091:+70345 None:intergenic
GAGAGTTAATACTTTCATGT+TGG 0.499971 tig0023091:-70485 Msa1404860:three_prime_UTR
AGGAAAATAGAAGTGTTGAT+TGG 0.500199 tig0023091:+70046 None:intergenic
AGAGCGCGTTCGCGTAGATC+CGG 0.505738 tig0023091:+74133 None:intergenic
TAAATCGGTTGCCTCATGAT+TGG 0.507887 tig0023091:-70677 Msa1404860:exon
CTCACCATTGCAAGAAGGAT+TGG 0.509379 tig0023091:+71254 None:intergenic
GAGGGAGAGGAATGGTTTGG+TGG 0.509621 tig0023091:+74576 None:intergenic
CGACGCTTTCTGAGATTCTC+CGG 0.509875 tig0023091:+74181 None:intergenic
TTTCGTGAGGATCACGGCGG+AGG 0.510267 tig0023091:+74512 None:intergenic
GGATGGAAGAGAGTAAAAGT+AGG 0.512354 tig0023091:-74845 Msa1404860:five_prime_UTR
CACTCTGGTAAGTTAGATGC+TGG 0.512954 tig0023091:-70847 Msa1404860:CDS
TCAGGCTCATCCCCATCAAA+AGG 0.513022 tig0023091:+70919 None:intergenic
CCTGTTGTTCATAGCTTGCA+AGG 0.514285 tig0023091:+73477 None:intergenic
CGGTGATTTGATAATGTGAA+TGG 0.515858 tig0023091:+74671 None:intergenic
GTACAAGTGTGATGATTCTT+GGG 0.516165 tig0023091:-70788 Msa1404860:CDS
ATTGCTCATAGGGTATTCTC+TGG 0.521986 tig0023091:-71405 Msa1404860:CDS
CAGTTATGGAGGGAGAGGAA+TGG 0.523524 tig0023091:+74568 None:intergenic
TCTCCCTCCATAACTGCCTC+CGG 0.524014 tig0023091:-74561 Msa1404860:CDS
TTTCTGAGATTCTCCGGATG+CGG 0.524348 tig0023091:+74187 None:intergenic
AGCGGCGGAACTCGGCTAAG+TGG 0.526358 tig0023091:+74602 None:intergenic
GCCCAGCAAAGTTCTTGTAC+AGG 0.529287 tig0023091:-73775 Msa1404860:intron
TACCCATACTCCCTCTATGC+AGG 0.531084 tig0023091:+71862 None:intergenic
GTGACATGTCCAGTGAGAAT+GGG 0.531399 tig0023091:+70992 None:intergenic
TCAGCAGTGTAAGGTGAAGC+AGG 0.532735 tig0023091:-71133 Msa1404860:CDS
TCGCGTAGATCCGGAGTTGA+AGG 0.536635 tig0023091:+74142 None:intergenic
AGATTTCAAGGTCTTTGGAT+CGG 0.538069 tig0023091:+74718 None:intergenic
AGGGAGGCGCGGCCGCCGGG+AGG 0.538738 tig0023091:+74532 None:intergenic
GGTGGAAGAGCGGCGGAACT+CGG 0.539548 tig0023091:+74594 None:intergenic
TTTGCTGTCGTCACTCACTC+TGG 0.539742 tig0023091:-70862 Msa1404860:CDS
AACATTGAAATGCAGGGCGA+GGG 0.539768 tig0023091:-72411 Msa1404860:intron
CATCCTCAATCTTAAGGAGT+CGG 0.541711 tig0023091:-70960 Msa1404860:CDS
GCTTCCAATCCTTCTTGCAA+TGG 0.542195 tig0023091:-71258 Msa1404860:CDS
CAACGTTCCTGATTTCCCGC+GGG 0.545113 tig0023091:-74086 Msa1404860:CDS
CTACGCGAACGCGCTCTGAT+CGG 0.545145 tig0023091:-74127 Msa1404860:CDS
TGGAGCGAAAGAGGTGGGAT+GGG 0.546265 tig0023091:-74866 Msa1404860:five_prime_UTR
GGACTGCACTCCTGCATAGA+GGG 0.546844 tig0023091:-71872 Msa1404860:CDS
CGACGTAAGCCACACAATGA+AGG 0.547420 tig0023091:-73395 Msa1404860:CDS
ACCTGTACAAGAACTTTGCT+GGG 0.547919 tig0023091:+73774 None:intergenic
CGCATGAGATGCAGGCATAG+AGG 0.550847 tig0023091:+74449 None:intergenic
AAGCATCAAAGAGGGGAGGA+GGG 0.551004 tig0023091:+70346 None:intergenic
AGCATCAAAGAGGGGAGGAG+GGG 0.551266 tig0023091:+70347 None:intergenic
CTCATGATTGGCACATGTGA+TGG 0.553021 tig0023091:-70665 Msa1404860:exon
TCATGTCACTCTTCCACCGC+CGG 0.554123 tig0023091:-74418 Msa1404860:CDS
GGGAAATCAGGAACGTTGAT+CGG 0.554225 tig0023091:+74091 None:intergenic
AATACATTACCTTCATTGTG+TGG 0.554718 tig0023091:+73386 None:intergenic
AAATATGGAGCGAAAGAGGT+GGG 0.554776 tig0023091:-74871 Msa1404860:five_prime_UTR
GGAAGGAGCAGAGAGACCGC+AGG 0.555638 tig0023091:+74474 None:intergenic
GGATTACCGTCCTTCAACTC+CGG 0.556868 tig0023091:-74152 Msa1404860:CDS
TCCAACTTTCTGGAAACTTG+AGG 0.558593 tig0023091:-70429 Msa1404860:three_prime_UTR
AAACCGACTCCTTAAGATTG+AGG 0.558602 tig0023091:+70957 None:intergenic
TGGACTGCACTCCTGCATAG+AGG 0.559071 tig0023091:-71873 Msa1404860:CDS
AATGCTGATGATGCCGCAAA+TGG 0.559230 tig0023091:-73929 Msa1404860:CDS
CAATCCTTCTTGCAATGGTG+AGG 0.559381 tig0023091:-71253 Msa1404860:CDS
CTGATCAATGTCAACTCCTA+GGG 0.561003 tig0023091:+72368 None:intergenic
CTCCTGCATAGAGGGAGTAT+GGG 0.561694 tig0023091:-71864 Msa1404860:intron
AGAATGGGAACTGCAAATAA+CGG 0.566367 tig0023091:+71007 None:intergenic
ATGAGATGCAGGCATAGAGG+CGG 0.566788 tig0023091:+74452 None:intergenic
GTGAGGATCACGGCGGAGGG+AGG 0.567687 tig0023091:+74516 None:intergenic
CATTGATGCGGCATGTGCGG+CGG 0.567934 tig0023091:+74381 None:intergenic
GGATGCGGAGTAGATGACAT+AGG 0.568578 tig0023091:+74202 None:intergenic
CGGCTGAGATTCAGAGTGGG+AGG 0.569818 tig0023091:+74749 None:intergenic
CAACTATTATCAAGATTCGA+GGG 0.569941 tig0023091:+70374 None:intergenic
ATGTGAATGGATCGAATGGA+TGG 0.571689 tig0023091:+74684 None:intergenic
TGAGATGCAGGCATAGAGGC+GGG 0.572369 tig0023091:+74453 None:intergenic
ACAACTATTATCAAGATTCG+AGG 0.573337 tig0023091:+70373 None:intergenic
ACCGATTATGCTTATCACTC+AGG 0.573589 tig0023091:+73972 None:intergenic
ATCTGCGATTAAGCAATCAA+TGG 0.573921 tig0023091:-70810 Msa1404860:CDS
TTATATGGAAGCAAGAAACA+AGG 0.575945 tig0023091:+71076 None:intergenic
GGAGGCAGTTATGGAGGGAG+AGG 0.576687 tig0023091:+74563 None:intergenic
TGATCCGGAGGCAGTTATGG+AGG 0.576751 tig0023091:+74557 None:intergenic
TTCGTGAGGATCACGGCGGA+GGG 0.577779 tig0023091:+74513 None:intergenic
GTGAGAAATGACACCGGCGG+TGG 0.578310 tig0023091:+74405 None:intergenic
AAGATTGAGGATGAGAGATA+AGG 0.583138 tig0023091:+70970 None:intergenic
TTACAAGAGCAGAGAAATTG+GGG 0.584043 tig0023091:-71176 Msa1404860:CDS
AACTCGGCTAAGTGGGGACA+TGG 0.584956 tig0023091:+74610 None:intergenic
TCAAGTGAGATGTCTACGCA+TGG 0.585086 tig0023091:+71324 None:intergenic
AGACATTGATGCGGCATGTG+CGG 0.585359 tig0023091:+74378 None:intergenic
TCAACGTTCCTGATTTCCCG+CGG 0.585556 tig0023091:-74087 Msa1404860:CDS
TCTATCCAAGCACCCCATCA+AGG 0.586315 tig0023091:+71200 None:intergenic
GATGCGGAGTAGATGACATA+GGG 0.587068 tig0023091:+74203 None:intergenic
GCAAACGCAGCAGAAAAGCT+CGG 0.588350 tig0023091:+74321 None:intergenic
TCTCAGAAAGCGTCGCCGAG+TGG 0.593703 tig0023091:-74173 Msa1404860:CDS
CATGCCGCATCAATGTCTCC+TGG 0.594546 tig0023091:-74373 Msa1404860:CDS
AACATTGTGAGGGCTGCTCA+GGG 0.594864 tig0023091:-70748 Msa1404860:CDS
GATCCGGAGGCAGTTATGGA+GGG 0.595001 tig0023091:+74558 None:intergenic
TATATGGAAGCAAGAAACAA+GGG 0.595854 tig0023091:+71077 None:intergenic
TTGACTTGGAACCAAATCAA+GGG 0.596094 tig0023091:-71305 Msa1404860:CDS
TCGATTGCGATCTGATGACC+AGG 0.596802 tig0023091:+74355 None:intergenic
GCTTGATGGGATCCATGAAA+AGG 0.596972 tig0023091:-73429 Msa1404860:CDS
GAAGTCATGGCATATCGTTA+GGG 0.598867 tig0023091:+70598 None:intergenic
AAAATATGGAGCGAAAGAGG+TGG 0.600133 tig0023091:-74872 Msa1404860:five_prime_UTR
AACTGATTCTGGAACAAACA+GGG 0.601896 tig0023091:+71908 None:intergenic
ATGCAGGCATAGAGGCGGGA+AGG 0.603348 tig0023091:+74457 None:intergenic
AAAAGAAATGGAGAGAACAA+TGG 0.604176 tig0023091:-73881 Msa1404860:CDS
TGTTTCACACGCCACCGTTG+AGG 0.604532 tig0023091:-74003 Msa1404860:CDS
GAGGAATTTCGTGAGGATCA+CGG 0.607762 tig0023091:+74506 None:intergenic
GATTGAGATTAAGGAGGACA+AGG 0.608404 tig0023091:+71949 None:intergenic
TCTTTGGATCGGAGAATCAA+CGG 0.609825 tig0023091:+74729 None:intergenic
CATTTCAATCATCTAGAGGA+AGG 0.612225 tig0023091:+70026 None:intergenic
GATAATGTGAATGGATCGAA+TGG 0.615478 tig0023091:+74680 None:intergenic
TTCAAAGCATCAAAGAGGGG+AGG 0.619344 tig0023091:+70342 None:intergenic
GTTGCGTCCACAATCGGCGA+CGG 0.621132 tig0023091:-74244 Msa1404860:CDS
TGACTTGGAACCAAATCAAG+GGG 0.622070 tig0023091:-71304 Msa1404860:CDS
AGTTGTTGATGTGAAACCAC+AGG 0.622253 tig0023091:+71353 None:intergenic
TTGCTGGGCTATAGGGAAGA+CGG 0.622634 tig0023091:+73789 None:intergenic
TGCCTCCGGATCAAACCTCC+CGG 0.622961 tig0023091:-74547 Msa1404860:CDS
ATTCCTCACTGCAACGCCTG+CGG 0.624299 tig0023091:-74490 Msa1404860:CDS
GATCCATGAAAAGGTGGACA+AGG 0.624629 tig0023091:-73420 Msa1404860:CDS
TCGGCCTCACCATTGCAAGA+AGG 0.626312 tig0023091:+71249 None:intergenic
GTGTATGAATGGAGAAGTCA+TGG 0.626462 tig0023091:+70585 None:intergenic
AAGTTGATGAAAACATTGTG+AGG 0.627661 tig0023091:-70759 Msa1404860:CDS
CATCACATGTGCCAATCATG+AGG 0.628162 tig0023091:+70666 None:intergenic
GATGTTATGTGTATGGCCTG+TGG 0.629984 tig0023091:-71369 Msa1404860:CDS
CACGATCGTAAACCTGATCA+CGG 0.630349 tig0023091:+74299 None:intergenic
TCACACCTGTGCTATCTCGA+TGG 0.632252 tig0023091:-72324 Msa1404860:CDS
AGACCGCAGGCGTTGCAGTG+AGG 0.634031 tig0023091:+74487 None:intergenic
TTGGGATATCTACCTTGATG+GGG 0.634651 tig0023091:-71212 Msa1404860:CDS
CTCAGGAAGTAATTCCTCAA+CGG 0.634756 tig0023091:+73989 None:intergenic
GGTGCATTTCAATCATCTAG+AGG 0.635544 tig0023091:+70022 None:intergenic
GGAATGGTTTGGTGGAAGAG+CGG 0.636084 tig0023091:+74584 None:intergenic
GTCATGTCCTCCAAAATCAA+CGG 0.636395 tig0023091:-74649 Msa1404860:CDS
CAAGTGAGATGTCTACGCAT+GGG 0.638098 tig0023091:+71325 None:intergenic
ATATGGAAGCAAGAAACAAG+GGG 0.638379 tig0023091:+71078 None:intergenic
TTGAAGGACGGTAATCCACT+CGG 0.644376 tig0023091:+74158 None:intergenic
GGCTGAGATTCAGAGTGGGA+GGG 0.646527 tig0023091:+74750 None:intergenic
CGGCGGAACTCGGCTAAGTG+GGG 0.646958 tig0023091:+74604 None:intergenic
TAACACCATCGAGATAGCAC+AGG 0.651735 tig0023091:+72319 None:intergenic
AACGTTCCTGATTTCCCGCG+GGG 0.652139 tig0023091:-74085 Msa1404860:CDS
TGATGGGATCCATGAAAAGG+TGG 0.653101 tig0023091:-73426 Msa1404860:CDS
TTGCAGTGAGGAATTTCGTG+AGG 0.654104 tig0023091:+74499 None:intergenic
AACTATTATCAAGATTCGAG+GGG 0.661396 tig0023091:+70375 None:intergenic
ATGGTTTGGTGGAAGAGCGG+CGG 0.661966 tig0023091:+74587 None:intergenic
CAACGGCTGAGATTCAGAGT+GGG 0.664470 tig0023091:+74746 None:intergenic
GTAGATCCGGAGTTGAAGGA+CGG 0.681063 tig0023091:+74146 None:intergenic
GCTTCTGATTGAGATTAAGG+AGG 0.681178 tig0023091:+71943 None:intergenic
GGTCTGTGCGATCACGACTG+CGG 0.684411 tig0023091:+74267 None:intergenic
TCAACGGCTGAGATTCAGAG+TGG 0.692651 tig0023091:+74745 None:intergenic
AGTTGATGAAAACATTGTGA+GGG 0.699031 tig0023091:-70758 Msa1404860:CDS
AGGAAGTAATTCCTCAACGG+TGG 0.706756 tig0023091:+73992 None:intergenic
ACTATTATCAAGATTCGAGG+GGG 0.712813 tig0023091:+70376 None:intergenic
ATGACCAGGAGACATTGATG+CGG 0.728953 tig0023091:+74369 None:intergenic
GGCGGCGTGAGAAATGACAC+CGG 0.740854 tig0023091:+74399 None:intergenic
GACTTGGAACCAAATCAAGG+GGG 0.743974 tig0023091:-71303 Msa1404860:CDS
GGAAGAGTGACATGATACAG+CGG 0.752026 tig0023091:+74426 None:intergenic
CTCCGGATCAAACCTCCCGG+CGG 0.757304 tig0023091:-74544 Msa1404860:CDS
GGCGTGAGAAATGACACCGG+CGG 0.784348 tig0023091:+74402 None:intergenic
GAATTTCGTGAGGATCACGG+CGG 0.842560 tig0023091:+74509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAAAAAAATAAAACAAAA+GGG + tig0023091:73286-73305 None:intergenic 10.0%
!! AACTAAAAAAATAAAACAAA+AGG + tig0023091:73287-73306 None:intergenic 10.0%
!! AATATAAATACAAATAAAGT+AGG + tig0023091:74606-74625 None:intergenic 10.0%
!! AAATACAAAAAATCAAAACA+GGG + tig0023091:71588-71607 None:intergenic 15.0%
!!! TATTTTTGATCAAATCTTTT+AGG - tig0023091:71835-71854 Msa1404860:intron 15.0%
!!! AGTTTTTAGAATTTATTCAC+TGG - tig0023091:71257-71276 Msa1404860:CDS 20.0%
!!! GTTTTTAGAATTTATTCACT+GGG - tig0023091:71258-71277 Msa1404860:CDS 20.0%
!! CAAATACAAAAAATCAAAAC+AGG + tig0023091:71589-71608 None:intergenic 20.0%
!!! CTGTTTTGATTTTTTGTATT+TGG - tig0023091:71587-71606 Msa1404860:intron 20.0%
!!! CAACAAAATACTATTTTTCT+AGG - tig0023091:71750-71769 Msa1404860:intron 20.0%
!! GATATATTTCAGTATCTTTA+AGG + tig0023091:71992-72011 None:intergenic 20.0%
!! TCATCTTAAATAATGGTAAA+TGG - tig0023091:72052-72071 Msa1404860:intron 20.0%
!! TTATGTTCTTGAAAATCTAA+TGG + tig0023091:72254-72273 None:intergenic 20.0%
!! TAATCTAGTATACAATCTAA+AGG + tig0023091:72279-72298 None:intergenic 20.0%
!! TATTTGTTTCAAAATGAAGT+TGG - tig0023091:73156-73175 Msa1404860:intron 20.0%
!!! TTAATTTTCTTGTGTATGAA+TGG + tig0023091:74309-74328 None:intergenic 20.0%
!! CACAAGAAAATTAAAAAACA+AGG - tig0023091:74315-74334 Msa1404860:CDS 20.0%
!! ACAAAAAACAAAAAGAGAAA+TGG + tig0023091:74636-74655 None:intergenic 20.0%
!!! CTCTTTTTGTTTTTTGTTTT+TGG - tig0023091:74639-74658 Msa1404860:CDS 20.0%
!!! TCAAGATTTCATTTTTGTGA+GGG + tig0023091:70098-70117 None:intergenic 25.0%
!!! ATCAAGATTTCATTTTTGTG+AGG + tig0023091:70099-70118 None:intergenic 25.0%
! GATAGTAAAGTTAGATTTCA+AGG + tig0023091:70177-70196 None:intergenic 25.0%
! AAACACTTGTTTCATGAATT+CGG - tig0023091:70842-70861 Msa1404860:CDS 25.0%
! TTATTCACTGGGTTTATATT+TGG - tig0023091:71269-71288 Msa1404860:CDS 25.0%
!!! AGTTATTTGAGTTGTTGTTA+TGG - tig0023091:71345-71364 Msa1404860:CDS 25.0%
!! TTTTTCATTTCAATGCTTGA+TGG - tig0023091:71437-71456 Msa1404860:intron 25.0%
!! TTTTCATTTCAATGCTTGAT+GGG - tig0023091:71438-71457 Msa1404860:intron 25.0%
! AAACAGTGACACAAATTTAT+TGG - tig0023091:71520-71539 Msa1404860:intron 25.0%
! AAATTTCAACATACTTCACA+GGG + tig0023091:71681-71700 None:intergenic 25.0%
! AAAATTTCAACATACTTCAC+AGG + tig0023091:71682-71701 None:intergenic 25.0%
!!! GTGTCATTTATCTTCAATAA+TGG + tig0023091:71937-71956 None:intergenic 25.0%
! AAGGTATGTATGTTTGTATA+GGG + tig0023091:71973-71992 None:intergenic 25.0%
! TAAGGTATGTATGTTTGTAT+AGG + tig0023091:71974-71993 None:intergenic 25.0%
!! GTGTCATTCATCTTAAATAA+TGG - tig0023091:72045-72064 Msa1404860:intron 25.0%
!! AATTTTTGCCTATGAAACAA+GGG + tig0023091:72147-72166 None:intergenic 25.0%
!! TAATTTTTGCCTATGAAACA+AGG + tig0023091:72148-72167 None:intergenic 25.0%
! TTCCTAACTATAAAACCATA+CGG + tig0023091:72172-72191 None:intergenic 25.0%
!! TTTGAAACTTAAAGAGTAAG+AGG - tig0023091:72196-72215 Msa1404860:intron 25.0%
!!! AAGAGTATTCTGAATCATTT+TGG + tig0023091:72429-72448 None:intergenic 25.0%
! TTATCATAACATTGAAATGC+AGG - tig0023091:72462-72481 Msa1404860:intron 25.0%
! TATCATAACATTGAAATGCA+GGG - tig0023091:72463-72482 Msa1404860:intron 25.0%
! TCCTATATGATGAATTGAAT+AGG + tig0023091:72631-72650 None:intergenic 25.0%
! TATCTAAACATGGAAAAAAG+AGG + tig0023091:72688-72707 None:intergenic 25.0%
!! AAACTTTTGGCATTTTATGT+GGG + tig0023091:72867-72886 None:intergenic 25.0%
!! AAAACTTTTGGCATTTTATG+TGG + tig0023091:72868-72887 None:intergenic 25.0%
! TAGACATCAAGTCAATTTAT+CGG - tig0023091:73125-73144 Msa1404860:intron 25.0%
! TTTACAATGGTTGCAAAATT+AGG - tig0023091:73212-73231 Msa1404860:intron 25.0%
! AAACCTCAATTTAATACAAC+AGG - tig0023091:73258-73277 Msa1404860:intron 25.0%
!! AGTGCTCAAATCTTTTTATA+TGG + tig0023091:73822-73841 None:intergenic 25.0%
! CTTCAAGAAAAAAAATGTCA+AGG - tig0023091:73842-73861 Msa1404860:CDS 25.0%
! AAGAAAAAAAATGTCAAGGA+AGG - tig0023091:73846-73865 Msa1404860:CDS 25.0%
!! AACAGAATATTTCCTTTTGA+TGG - tig0023091:73949-73968 Msa1404860:CDS 25.0%
!! ACAGAATATTTCCTTTTGAT+GGG - tig0023091:73950-73969 Msa1404860:CDS 25.0%
! CTATAAAGCAACTGATAAAT+CGG - tig0023091:74188-74207 Msa1404860:CDS 25.0%
!!! TGCAATTGTGTATCATTTTT+TGG - tig0023091:74365-74384 Msa1404860:CDS 25.0%
!!! GCAATTGTGTATCATTTTTT+GGG - tig0023091:74366-74385 Msa1404860:CDS 25.0%
! TATGGATTCCTTATAATTTG+TGG - tig0023091:74475-74494 Msa1404860:CDS 25.0%
! GGTAAAAACCACAAATTATA+AGG + tig0023091:74486-74505 None:intergenic 25.0%
!!! TTTAGTGCTTTTTCGTTTTT+GGG + tig0023091:74684-74703 None:intergenic 25.0%
! TCCAGAAAATGTCATAAAAA+AGG - tig0023091:74734-74753 Msa1404860:five_prime_UTR 25.0%
!!! TCCTTTTTTATGACATTTTC+TGG + tig0023091:74738-74757 None:intergenic 25.0%
AAGTTAGATTTCAAGGTCTT+TGG + tig0023091:70170-70189 None:intergenic 30.0%
AAAAGAAATGGAGAGAACAA+TGG - tig0023091:70999-71018 Msa1404860:CDS 30.0%
GAGAACAATGGAACAAAAAA+TGG - tig0023091:71011-71030 Msa1404860:CDS 30.0%
!! ATTATGCTTAGCTTGTGATA+TGG - tig0023091:71037-71056 Msa1404860:CDS 30.0%
!!! TATGTTCTCTGCTGTTTTTT+CGG - tig0023091:71064-71083 Msa1404860:CDS 30.0%
!! TTTGGATTGGTTATTAGTGA+CGG - tig0023091:71287-71306 Msa1404860:CDS 30.0%
AATACATTACCTTCATTGTG+TGG + tig0023091:71497-71516 None:intergenic 30.0%
AAAACAGGGACAATTATACT+TGG + tig0023091:71574-71593 None:intergenic 30.0%
!!! GAGGATTTGGTTCTATTTTA+TGG - tig0023091:71618-71637 Msa1404860:intron 30.0%
! GTTCTATTTTATGGCATGAA+AGG - tig0023091:71627-71646 Msa1404860:intron 30.0%
! AGTAGTGTTATTATCGTGTT+GGG + tig0023091:71912-71931 None:intergenic 30.0%
! AAGTAGTGTTATTATCGTGT+TGG + tig0023091:71913-71932 None:intergenic 30.0%
TATGTATGTTTGTATAGGGA+TGG + tig0023091:71969-71988 None:intergenic 30.0%
!! AAATGGTGTTATTATCGTGT+TGG - tig0023091:72069-72088 Msa1404860:intron 30.0%
ATAGGCAAAAATTAACCGTA+TGG - tig0023091:72154-72173 Msa1404860:intron 30.0%
!!! AACCGTATGGTTTTATAGTT+AGG - tig0023091:72167-72186 Msa1404860:intron 30.0%
! ATTGATTTACTGATACTCAC+AGG + tig0023091:72598-72617 None:intergenic 30.0%
ATGATGAATTGAATAGGCTA+GGG + tig0023091:72625-72644 None:intergenic 30.0%
TATGATGAATTGAATAGGCT+AGG + tig0023091:72626-72645 None:intergenic 30.0%
GCCTATTCAATTCATCATAT+AGG - tig0023091:72627-72646 Msa1404860:intron 30.0%
CTTGTTCGATTATCTAAACA+TGG + tig0023091:72698-72717 None:intergenic 30.0%
CATGTTTAGATAATCGAACA+AGG - tig0023091:72696-72715 Msa1404860:intron 30.0%
TATACTTCTATCACATTCAC+GGG + tig0023091:72762-72781 None:intergenic 30.0%
CTATACTTCTATCACATTCA+CGG + tig0023091:72763-72782 None:intergenic 30.0%
! ATGTGATAGAAGTATAGAAC+TGG - tig0023091:72766-72785 Msa1404860:intron 30.0%
! TGTGATAGAAGTATAGAACT+GGG - tig0023091:72767-72786 Msa1404860:intron 30.0%
! ACTGGGTTTTTGTAAATTCT+TGG - tig0023091:72784-72803 Msa1404860:intron 30.0%
! TACCACATAAGATTTTTCCA+AGG + tig0023091:72822-72841 None:intergenic 30.0%
! TGTACAGAGACAAAAACTTT+TGG + tig0023091:72880-72899 None:intergenic 30.0%
! AATCAGTTCAGAATGTGTTT+TGG - tig0023091:72987-73006 Msa1404860:intron 30.0%
GGGTAACATTAAAACACATT+CGG - tig0023091:73036-73055 Msa1404860:intron 30.0%
CCATTGTAAAACTAAACTTC+TGG + tig0023091:73202-73221 None:intergenic 30.0%
!!! CCAGAAGTTTAGTTTTACAA+TGG - tig0023091:73199-73218 Msa1404860:intron 30.0%
GTAGCAAATAAGTTCATTGT+TGG + tig0023091:73312-73331 None:intergenic 30.0%
ATTTACAAGAGCAGAGAAAT+TGG - tig0023091:73702-73721 Msa1404860:intron 30.0%
TTTACAAGAGCAGAGAAATT+GGG - tig0023091:73703-73722 Msa1404860:intron 30.0%
TATATGGAAGCAAGAAACAA+GGG + tig0023091:73806-73825 None:intergenic 30.0%
TTATATGGAAGCAAGAAACA+AGG + tig0023091:73807-73826 None:intergenic 30.0%
AAAAAAAATGTCAAGGAAGG+TGG - tig0023091:73849-73868 Msa1404860:CDS 30.0%
! CAGAATATTTCCTTTTGATG+GGG - tig0023091:73951-73970 Msa1404860:CDS 30.0%
!! AAGTTGATGAAAACATTGTG+AGG - tig0023091:74121-74140 Msa1404860:CDS 30.0%
!! AGTTGATGAAAACATTGTGA+GGG - tig0023091:74122-74141 Msa1404860:CDS 30.0%
GACATTAAATGCCAATGATT+TGG + tig0023091:74242-74261 None:intergenic 30.0%
ATCATTGGCATTTAATGTCA+TGG - tig0023091:74243-74262 Msa1404860:CDS 30.0%
GAGAGTTAATACTTTCATGT+TGG - tig0023091:74395-74414 Msa1404860:CDS 30.0%
AACTATTATCAAGATTCGAG+GGG + tig0023091:74508-74527 None:intergenic 30.0%
CAACTATTATCAAGATTCGA+GGG + tig0023091:74509-74528 None:intergenic 30.0%
ACAACTATTATCAAGATTCG+AGG + tig0023091:74510-74529 None:intergenic 30.0%
!! ATTTTCAAAGCATCAAAGAG+GGG + tig0023091:74544-74563 None:intergenic 30.0%
!! GATTTTCAAAGCATCAAAGA+GGG + tig0023091:74545-74564 None:intergenic 30.0%
!! TGATTTTCAAAGCATCAAAG+AGG + tig0023091:74546-74565 None:intergenic 30.0%
!! CTTTGATGCTTTGAAAATCA+AGG - tig0023091:74546-74565 Msa1404860:CDS 30.0%
!!! TTTGTTTTTGGTAGTGAAAG+AGG - tig0023091:74651-74670 Msa1404860:exon 30.0%
!!! TTGTTTTTGGTAGTGAAAGA+GGG - tig0023091:74652-74671 Msa1404860:exon 30.0%
!!! CTTTAGTGCTTTTTCGTTTT+TGG + tig0023091:74685-74704 None:intergenic 30.0%
GTCATAAAAAAGGAGACTTA+AGG - tig0023091:74744-74763 Msa1404860:five_prime_UTR 30.0%
! GACTAATTTTATCTTCTCTC+TGG + tig0023091:74812-74831 None:intergenic 30.0%
!! AGGAAAATAGAAGTGTTGAT+TGG + tig0023091:74837-74856 None:intergenic 30.0%
AGATTTCAAGGTCTTTGGAT+CGG + tig0023091:70165-70184 None:intergenic 35.0%
GATAATGTGAATGGATCGAA+TGG + tig0023091:70203-70222 None:intergenic 35.0%
!! CGGTGATTTGATAATGTGAA+TGG + tig0023091:70212-70231 None:intergenic 35.0%
!!! TGAAATCTGACCGTTGATTT+TGG + tig0023091:70244-70263 None:intergenic 35.0%
TCCTGAGTGATAAGCATAAT+CGG - tig0023091:70907-70926 Msa1404860:CDS 35.0%
! ATTTCTTTTCGCAGTTGCTA+TGG + tig0023091:70988-71007 None:intergenic 35.0%
ATAGCAACTGCGAAAAGAAA+TGG - tig0023091:70987-71006 Msa1404860:CDS 35.0%
!!! ATGTTCTCTGCTGTTTTTTC+GGG - tig0023091:71065-71084 Msa1404860:CDS 35.0%
TTGTACAGGTGTGTATACTT+TGG - tig0023091:71119-71138 Msa1404860:CDS 35.0%
CACTGGGTTTATATTTGGAT+TGG - tig0023091:71274-71293 Msa1404860:CDS 35.0%
TGTTGTTATGGTGTTTCAGT+TGG - tig0023091:71357-71376 Msa1404860:CDS 35.0%
! TGTACTTGCTAGAATCTGTA+AGG - tig0023091:71708-71727 Msa1404860:intron 35.0%
! TATCCAGTGTCGAATAGTAT+AGG - tig0023091:72008-72027 Msa1404860:intron 35.0%
! ATCCAGTGTCGAATAGTATA+GGG - tig0023091:72009-72028 Msa1404860:intron 35.0%
AGTAAGAGGATACTGATCTT+TGG - tig0023091:72210-72229 Msa1404860:intron 35.0%
!! CTAACTCTTTGGCTTGTAAT+GGG + tig0023091:72310-72329 None:intergenic 35.0%
ATTATGCTGAGCTAACTCTT+TGG + tig0023091:72321-72340 None:intergenic 35.0%
ACTATATTGATCATCTCCCA+TGG + tig0023091:72364-72383 None:intergenic 35.0%
ATTTACTGATACTCACAGGA+AGG + tig0023091:72594-72613 None:intergenic 35.0%
! GAAAAAAGAGGTGGTGTTAA+CGG + tig0023091:72676-72695 None:intergenic 35.0%
CTAAACATGGAAAAAAGAGG+TGG + tig0023091:72685-72704 None:intergenic 35.0%
ATACTTCTATCACATTCACG+GGG + tig0023091:72761-72780 None:intergenic 35.0%
AGCCTTGGAAAAATCTTATG+TGG - tig0023091:72817-72836 Msa1404860:intron 35.0%
TGTACAGTAGTTATGTTTCC+TGG - tig0023091:72894-72913 Msa1404860:intron 35.0%
TCAATCAGAAGCCCATAATT+AGG - tig0023091:72948-72967 Msa1404860:intron 35.0%
ACAAACAGGGTCCTAATTAT+GGG + tig0023091:72962-72981 None:intergenic 35.0%
AACAAACAGGGTCCTAATTA+TGG + tig0023091:72963-72982 None:intergenic 35.0%
!! AACTGATTCTGGAACAAACA+GGG + tig0023091:72975-72994 None:intergenic 35.0%
! AACACATTCTGAACTGATTC+TGG + tig0023091:72986-73005 None:intergenic 35.0%
ACATTCGGTTCCTAATTATG+AGG - tig0023091:73051-73070 Msa1404860:intron 35.0%
! CAGTTTTGCTCCTCATAATT+AGG + tig0023091:73064-73083 None:intergenic 35.0%
TATAGCCTCTAACAATTGTG+TGG + tig0023091:73089-73108 None:intergenic 35.0%
!!! AAATTGAGGTTTTCAAGTGC+AGG + tig0023091:73250-73269 None:intergenic 35.0%
GAGCCTGTTGTATTAAATTG+AGG + tig0023091:73264-73283 None:intergenic 35.0%
CCTGCACAATCAATAAAATG+TGG + tig0023091:73442-73461 None:intergenic 35.0%
!! CCACATTTTATTGATTGTGC+AGG - tig0023091:73439-73458 Msa1404860:CDS 35.0%
CGATTGTTGTATTGCTCATA+GGG - tig0023091:73465-73484 Msa1404860:CDS 35.0%
!! TTGACTTGGAACCAAATCAA+GGG - tig0023091:73575-73594 Msa1404860:intron 35.0%
! AGGTAGATATCCCAAAGTTT+TGG + tig0023091:73663-73682 None:intergenic 35.0%
! TTTGGGATATCTACCTTGAT+GGG - tig0023091:73667-73686 Msa1404860:intron 35.0%
TTACAAGAGCAGAGAAATTG+GGG - tig0023091:73704-73723 Msa1404860:intron 35.0%
ATATGGAAGCAAGAAACAAG+GGG + tig0023091:73805-73824 None:intergenic 35.0%
AGAATGGGAACTGCAAATAA+CGG + tig0023091:73876-73895 None:intergenic 35.0%
AAGATTGAGGATGAGAGATA+AGG + tig0023091:73913-73932 None:intergenic 35.0%
ATCTCTCATCCTCAATCTTA+AGG - tig0023091:73914-73933 Msa1404860:CDS 35.0%
! CATAGATCATTTGAAGCATC+AGG + tig0023091:73982-74001 None:intergenic 35.0%
ATCTGCGATTAAGCAATCAA+TGG - tig0023091:74070-74089 Msa1404860:CDS 35.0%
GTACAAGTGTGATGATTCTT+GGG - tig0023091:74092-74111 Msa1404860:CDS 35.0%
!!! AACGAGCCAGTATTTTTTGT+AGG - tig0023091:74425-74444 Msa1404860:CDS 35.0%
ACTATTATCAAGATTCGAGG+GGG + tig0023091:74507-74526 None:intergenic 35.0%
CATTTCAATCATCTAGAGGA+AGG + tig0023091:74857-74876 None:intergenic 35.0%
AAAATATGGAGCGAAAGAGG+TGG - tig0023091:70008-70027 Msa1404860:three_prime_UTR 40.0%
AAATATGGAGCGAAAGAGGT+GGG - tig0023091:70009-70028 Msa1404860:three_prime_UTR 40.0%
GGATGGAAGAGAGTAAAAGT+AGG - tig0023091:70035-70054 Msa1404860:three_prime_UTR 40.0%
TCTTTGGATCGGAGAATCAA+CGG + tig0023091:70154-70173 None:intergenic 40.0%
ATGTGAATGGATCGAATGGA+TGG + tig0023091:70199-70218 None:intergenic 40.0%
!! GTTGATTTTGGAGGACATGA+CGG + tig0023091:70232-70251 None:intergenic 40.0%
GTCATGTCCTCCAAAATCAA+CGG - tig0023091:70231-70250 Msa1404860:intron 40.0%
!!! AATCTGACCGTTGATTTTGG+AGG + tig0023091:70241-70260 None:intergenic 40.0%
!! TTTCATGAATTCGGTGTTGC+AGG - tig0023091:70851-70870 Msa1404860:CDS 40.0%
CTCAGGAAGTAATTCCTCAA+CGG + tig0023091:70894-70913 None:intergenic 40.0%
ACCGATTATGCTTATCACTC+AGG + tig0023091:70911-70930 None:intergenic 40.0%
! CATCAGCATTGCTCATTTTC+TGG + tig0023091:70941-70960 None:intergenic 40.0%
AAGAACTTTGCTGGGCTATA+GGG + tig0023091:71101-71120 None:intergenic 40.0%
ACCTGTACAAGAACTTTGCT+GGG + tig0023091:71109-71128 None:intergenic 40.0%
!! GTGTGTATACTTTGGAGCTT+AGG - tig0023091:71127-71146 Msa1404860:CDS 40.0%
TGTTATGGTGTTTCAGTTGG+TGG - tig0023091:71360-71379 Msa1404860:CDS 40.0%
! TTGTTCATAGCTTGCAAGGT+TGG + tig0023091:71402-71421 None:intergenic 40.0%
TTTGTATTTGGCTGAGAGAG+AGG - tig0023091:71599-71618 Msa1404860:intron 40.0%
! ACTTGCTAGAATCTGTAAGG+TGG - tig0023091:71711-71730 Msa1404860:intron 40.0%
ATCTGTAAGGTGGCTTCTAT+TGG - tig0023091:71721-71740 Msa1404860:intron 40.0%
AGAAACCAGAGCTTCAACAA+TGG + tig0023091:71811-71830 None:intergenic 40.0%
! TGTTGAAGCTCTGGTTTCTT+TGG - tig0023091:71812-71831 Msa1404860:intron 40.0%
GGTATGTCTGTTTCAACTCA+TGG - tig0023091:71856-71875 Msa1404860:intron 40.0%
TCTGTTTCAACTCATGGCTT+TGG - tig0023091:71862-71881 Msa1404860:intron 40.0%
!! TTCAACTCATGGCTTTGGTT+TGG - tig0023091:71867-71886 Msa1404860:CDS 40.0%
! AGTGTTATTATCGTGTTGGG+AGG + tig0023091:71909-71928 None:intergenic 40.0%
ATCCCTATACTATTCGACAC+TGG + tig0023091:72014-72033 None:intergenic 40.0%
! AGTGTCGAATAGTATAGGGA+TGG - tig0023091:72013-72032 Msa1404860:intron 40.0%
!! GGTGTTATTATCGTGTTGGA+AGG - tig0023091:72073-72092 Msa1404860:intron 40.0%
GTTATTATCGTGTTGGAAGG+TGG - tig0023091:72076-72095 Msa1404860:intron 40.0%
! GGATAATGTAGGCTTTGGTT+TGG + tig0023091:72115-72134 None:intergenic 40.0%
ATGAAACAAGGGATTGAGGT+GGG + tig0023091:72136-72155 None:intergenic 40.0%
TATGAAACAAGGGATTGAGG+TGG + tig0023091:72137-72156 None:intergenic 40.0%
! ACCTCAATCCCTTGTTTCAT+AGG - tig0023091:72136-72155 Msa1404860:intron 40.0%
!! GCTAACTCTTTGGCTTGTAA+TGG + tig0023091:72311-72330 None:intergenic 40.0%
AGTTACAAACATGCTGACCA+TGG - tig0023091:72344-72363 Msa1404860:CDS 40.0%
GTTACAAACATGCTGACCAT+GGG - tig0023091:72345-72364 Msa1404860:CDS 40.0%
CTGATCAATGTCAACTCCTA+GGG + tig0023091:72515-72534 None:intergenic 40.0%
TCTGATCAATGTCAACTCCT+AGG + tig0023091:72516-72535 None:intergenic 40.0%
TTCACGGGGTTAAAATGCTA+AGG + tig0023091:72747-72766 None:intergenic 40.0%
!! CTTGGCTAAGATTTTAGCCT+TGG - tig0023091:72802-72821 Msa1404860:intron 40.0%
AAGGAACTTGCAAAGAAACC+AGG + tig0023091:72915-72934 None:intergenic 40.0%
GATTGAGATTAAGGAGGACA+AGG + tig0023091:72934-72953 None:intergenic 40.0%
GCTTCTGATTGAGATTAAGG+AGG + tig0023091:72940-72959 None:intergenic 40.0%
TGGGCTTCTGATTGAGATTA+AGG + tig0023091:72943-72962 None:intergenic 40.0%
!! GAACTGATTCTGGAACAAAC+AGG + tig0023091:72976-72995 None:intergenic 40.0%
CTGTTCCACACAATTGTTAG+AGG - tig0023091:73081-73100 Msa1404860:intron 40.0%
AACTCTTCAGTGCACAAAGA+AGG + tig0023091:73334-73353 None:intergenic 40.0%
CTTGAACTTGCGTTTCATGA+AGG - tig0023091:73401-73420 Msa1404860:CDS 40.0%
GCGATTGTTGTATTGCTCAT+AGG - tig0023091:73464-73483 Msa1404860:CDS 40.0%
! ATTGCTCATAGGGTATTCTC+TGG - tig0023091:73475-73494 Msa1404860:CDS 40.0%
! GGGTATTCTCTGGTATTTTG+CGG - tig0023091:73485-73504 Msa1404860:CDS 40.0%
AGTTGTTGATGTGAAACCAC+AGG + tig0023091:73530-73549 None:intergenic 40.0%
!! CTTGACTTGGAACCAAATCA+AGG - tig0023091:73574-73593 Msa1404860:intron 40.0%
! TGACTTGGAACCAAATCAAG+GGG - tig0023091:73576-73595 Msa1404860:intron 40.0%
TTAGTAGAACCCCCTTGATT+TGG + tig0023091:73589-73608 None:intergenic 40.0%
!! AGATATCCCAAAGTTTTGGC+TGG + tig0023091:73659-73678 None:intergenic 40.0%
!! CTTTGGGATATCTACCTTGA+TGG - tig0023091:73666-73685 Msa1404860:intron 40.0%
TTGGGATATCTACCTTGATG+GGG - tig0023091:73668-73687 Msa1404860:intron 40.0%
ACTGCTGACAGAAAAACTTC+TGG + tig0023091:73735-73754 None:intergenic 40.0%
! GTTTTTCTGTCAGCAGTGTA+AGG - tig0023091:73738-73757 Msa1404860:intron 40.0%
CATCCTCAATCTTAAGGAGT+CGG - tig0023091:73920-73939 Msa1404860:CDS 40.0%
! AAACCGACTCCTTAAGATTG+AGG + tig0023091:73926-73945 None:intergenic 40.0%
TCAATCTTAAGGAGTCGGTT+TGG - tig0023091:73925-73944 Msa1404860:CDS 40.0%
GGTACAAGTGTGATGATTCT+TGG - tig0023091:74091-74110 Msa1404860:CDS 40.0%
TAAATCGGTTGCCTCATGAT+TGG - tig0023091:74203-74222 Msa1404860:CDS 40.0%
CATGTGATGGTCCAAATCAT+TGG - tig0023091:74228-74247 Msa1404860:CDS 40.0%
GAAGTCATGGCATATCGTTA+GGG + tig0023091:74285-74304 None:intergenic 40.0%
AGAAGTCATGGCATATCGTT+AGG + tig0023091:74286-74305 None:intergenic 40.0%
GTGTATGAATGGAGAAGTCA+TGG + tig0023091:74298-74317 None:intergenic 40.0%
! GGAGTGCCTACAAAAAATAC+TGG + tig0023091:74434-74453 None:intergenic 40.0%
! TCCAACTTTCTGGAAACTTG+AGG - tig0023091:74451-74470 Msa1404860:CDS 40.0%
! CCAACTTTCTGGAAACTTGA+GGG - tig0023091:74452-74471 Msa1404860:CDS 40.0%
! TTTCTGGAAACTTGAGGGTA+TGG - tig0023091:74457-74476 Msa1404860:CDS 40.0%
! TTTTCTGGACTTGCATGTCT+AGG + tig0023091:74723-74742 None:intergenic 40.0%
TTACGAAGACTTCTCCTGAT+GGG + tig0023091:74771-74790 None:intergenic 40.0%
GGTGCATTTCAATCATCTAG+AGG + tig0023091:74861-74880 None:intergenic 40.0%
GAGGAATTTCGTGAGGATCA+CGG + tig0023091:70377-70396 None:intergenic 45.0%
TTGCAGTGAGGAATTTCGTG+AGG + tig0023091:70384-70403 None:intergenic 45.0%
GGAAGAGTGACATGATACAG+CGG + tig0023091:70457-70476 None:intergenic 45.0%
ATGACCAGGAGACATTGATG+CGG + tig0023091:70514-70533 None:intergenic 45.0%
CACGATCGTAAACCTGATCA+CGG + tig0023091:70584-70603 None:intergenic 45.0%
GATGCGGAGTAGATGACATA+GGG + tig0023091:70680-70699 None:intergenic 45.0%
TATGTCATCTACTCCGCATC+CGG - tig0023091:70680-70699 Msa1404860:exon 45.0%
!! TTTCTGAGATTCTCCGGATG+CGG + tig0023091:70696-70715 None:intergenic 45.0%
TTGAAGGACGGTAATCCACT+CGG + tig0023091:70725-70744 None:intergenic 45.0%
GGGAAATCAGGAACGTTGAT+CGG + tig0023091:70792-70811 None:intergenic 45.0%
AGGAAGTAATTCCTCAACGG+TGG + tig0023091:70891-70910 None:intergenic 45.0%
! AATGCTGATGATGCCGCAAA+TGG - tig0023091:70951-70970 Msa1404860:CDS 45.0%
GGCAGAATCATCACCATTTG+CGG + tig0023091:70967-70986 None:intergenic 45.0%
CAAGAACTTTGCTGGGCTAT+AGG + tig0023091:71102-71121 None:intergenic 45.0%
CACCTGTACAAGAACTTTGC+TGG + tig0023091:71110-71129 None:intergenic 45.0%
ATGCCTTTGATCAGAGGTCT+CGG + tig0023091:71172-71191 None:intergenic 45.0%
CTGGATATGCCTTTGATCAG+AGG + tig0023091:71178-71197 None:intergenic 45.0%
CAACACTGACACATCAACAC+TGG + tig0023091:71197-71216 None:intergenic 45.0%
! ATAGCTTGCAAGGTTGGACT+TGG + tig0023091:71396-71415 None:intergenic 45.0%
! CCTGTTGTTCATAGCTTGCA+AGG + tig0023091:71406-71425 None:intergenic 45.0%
CCTTGCAAGCTATGAACAAC+AGG - tig0023091:71403-71422 Msa1404860:CDS 45.0%
GCTTGATGGGATCCATGAAA+AGG - tig0023091:71451-71470 Msa1404860:intron 45.0%
TGATGGGATCCATGAAAAGG+TGG - tig0023091:71454-71473 Msa1404860:intron 45.0%
GATCCATGAAAAGGTGGACA+AGG - tig0023091:71460-71479 Msa1404860:intron 45.0%
! GATCCTTGTCCACCTTTTCA+TGG + tig0023091:71466-71485 None:intergenic 45.0%
TTTGGCTGAGAGAGAGGATT+TGG - tig0023091:71605-71624 Msa1404860:intron 45.0%
CTTCACAGGGACAACATATC+TGG + tig0023091:71668-71687 None:intergenic 45.0%
TCGAACCATTGTTGAAGCTC+TGG - tig0023091:71803-71822 Msa1404860:intron 45.0%
GTTATTATCGTGTTGGGAGG+AGG + tig0023091:71906-71925 None:intergenic 45.0%
GTCGAATAGTATAGGGATGG+CGG - tig0023091:72016-72035 Msa1404860:intron 45.0%
AGGTGGGATAATGTAGGCTT+TGG + tig0023091:72120-72139 None:intergenic 45.0%
GGATTGAGGTGGGATAATGT+AGG + tig0023091:72126-72145 None:intergenic 45.0%
GCCTATGAAACAAGGGATTG+AGG + tig0023091:72140-72159 None:intergenic 45.0%
TAACATTGAAATGCAGGGCG+AGG - tig0023091:72468-72487 Msa1404860:intron 45.0%
AACATTGAAATGCAGGGCGA+GGG - tig0023091:72469-72488 Msa1404860:intron 45.0%
TAACACCATCGAGATAGCAC+AGG + tig0023091:72564-72583 None:intergenic 45.0%
! TGCTATCTCGATGGTGTTAG+CGG - tig0023091:72565-72584 Msa1404860:intron 45.0%
ATGCTAAGGCAACTTTCTCC+CGG + tig0023091:72733-72752 None:intergenic 45.0%
GCGGTCAGATGTTATGTGTA+TGG - tig0023091:73504-73523 Msa1404860:CDS 45.0%
GATGTTATGTGTATGGCCTG+TGG - tig0023091:73511-73530 Msa1404860:intron 45.0%
CAAGTGAGATGTCTACGCAT+GGG + tig0023091:73558-73577 None:intergenic 45.0%
TCAAGTGAGATGTCTACGCA+TGG + tig0023091:73559-73578 None:intergenic 45.0%
CGTAGACATCTCACTTGACT+TGG - tig0023091:73561-73580 Msa1404860:intron 45.0%
GACTTGGAACCAAATCAAGG+GGG - tig0023091:73577-73596 Msa1404860:intron 45.0%
TCAAGGGGGTTCTACTAAGA+TGG - tig0023091:73591-73610 Msa1404860:intron 45.0%
GCTTCCAATCCTTCTTGCAA+TGG - tig0023091:73622-73641 Msa1404860:intron 45.0%
CTCACCATTGCAAGAAGGAT+TGG + tig0023091:73629-73648 None:intergenic 45.0%
CAATCCTTCTTGCAATGGTG+AGG - tig0023091:73627-73646 Msa1404860:intron 45.0%
!!! CCCAAAGTTTTGGCTGGAAT+CGG + tig0023091:73653-73672 None:intergenic 45.0%
CCGATTCCAGCCAAAACTTT+GGG - tig0023091:73650-73669 Msa1404860:intron 45.0%
CTCTCAAGCAGATGTCCATA+AGG - tig0023091:73773-73792 Msa1404860:intron 45.0%
AACAAGGGGAAGCTTCCTTA+TGG + tig0023091:73791-73810 None:intergenic 45.0%
TTTGCAGTTCCCATTCTCAC+TGG - tig0023091:73879-73898 Msa1404860:CDS 45.0%
GTGACATGTCCAGTGAGAAT+GGG + tig0023091:73891-73910 None:intergenic 45.0%
CACTCTGGTAAGTTAGATGC+TGG - tig0023091:74033-74052 Msa1404860:CDS 45.0%
CATCACATGTGCCAATCATG+AGG + tig0023091:74217-74236 None:intergenic 45.0%
CTCATGATTGGCACATGTGA+TGG - tig0023091:74215-74234 Msa1404860:CDS 45.0%
TTGTAGGCACTCCAACTTTC+TGG - tig0023091:74441-74460 Msa1404860:CDS 45.0%
CCCTCAAGTTTCCAGAAAGT+TGG + tig0023091:74455-74474 None:intergenic 45.0%
! TTCAAAGCATCAAAGAGGGG+AGG + tig0023091:74541-74560 None:intergenic 45.0%
GTTACGAAGACTTCTCCTGA+TGG + tig0023091:74772-74791 None:intergenic 45.0%
AGATTCAGAGTGGGAGGGAA+TGG + tig0023091:70128-70147 None:intergenic 50.0%
CAACGGCTGAGATTCAGAGT+GGG + tig0023091:70137-70156 None:intergenic 50.0%
TCAACGGCTGAGATTCAGAG+TGG + tig0023091:70138-70157 None:intergenic 50.0%
!! GGAATGGTTTGGTGGAAGAG+CGG + tig0023091:70299-70318 None:intergenic 50.0%
ATGGAGGGAGAGGAATGGTT+TGG + tig0023091:70310-70329 None:intergenic 50.0%
CAGTTATGGAGGGAGAGGAA+TGG + tig0023091:70315-70334 None:intergenic 50.0%
GTTTGATCCGGAGGCAGTTA+TGG + tig0023091:70329-70348 None:intergenic 50.0%
GAATTTCGTGAGGATCACGG+CGG + tig0023091:70374-70393 None:intergenic 50.0%
ATGAGATGCAGGCATAGAGG+CGG + tig0023091:70431-70450 None:intergenic 50.0%
AGACATTGATGCGGCATGTG+CGG + tig0023091:70505-70524 None:intergenic 50.0%
TCGATTGCGATCTGATGACC+AGG + tig0023091:70528-70547 None:intergenic 50.0%
GCAAACGCAGCAGAAAAGCT+CGG + tig0023091:70562-70581 None:intergenic 50.0%
!! TTTTTCTCCGTCGCCGATTG+TGG + tig0023091:70646-70665 None:intergenic 50.0%
GGATGCGGAGTAGATGACAT+AGG + tig0023091:70681-70700 None:intergenic 50.0%
!! CGACGCTTTCTGAGATTCTC+CGG + tig0023091:70702-70721 None:intergenic 50.0%
GGATTACCGTCCTTCAACTC+CGG - tig0023091:70728-70747 Msa1404860:CDS 50.0%
GTAGATCCGGAGTTGAAGGA+CGG + tig0023091:70737-70756 None:intergenic 50.0%
TCAACGTTCCTGATTTCCCG+CGG - tig0023091:70793-70812 Msa1404860:CDS 50.0%
TTGCGGGGGTTGAACAATCT+CGG - tig0023091:70819-70838 Msa1404860:CDS 50.0%
TTGCTGGGCTATAGGGAAGA+CGG + tig0023091:71094-71113 None:intergenic 50.0%
GCCCAGCAAAGTTCTTGTAC+AGG - tig0023091:71105-71124 Msa1404860:CDS 50.0%
CAGAGGTCTCGGTGATAAAC+AGG + tig0023091:71161-71180 None:intergenic 50.0%
TCACCGAGACCTCTGATCAA+AGG - tig0023091:71166-71185 Msa1404860:CDS 50.0%
CGACGTAAGCCACACAATGA+AGG - tig0023091:71485-71504 Msa1404860:intron 50.0%
TCACACCTGTGCTATCTCGA+TGG - tig0023091:72556-72575 Msa1404860:intron 50.0%
GAACAAGGCTTGTCTATCCC+CGG - tig0023091:72711-72730 Msa1404860:intron 50.0%
AACAAGGCTTGTCTATCCCC+GGG - tig0023091:72712-72731 Msa1404860:intron 50.0%
TGCTAAGGCAACTTTCTCCC+GGG + tig0023091:72732-72751 None:intergenic 50.0%
ACTCCTGCATAGAGGGAGTA+TGG - tig0023091:73015-73034 Msa1404860:intron 50.0%
! CTCCTGCATAGAGGGAGTAT+GGG - tig0023091:73016-73035 Msa1404860:intron 50.0%
TACCCATACTCCCTCTATGC+AGG + tig0023091:73021-73040 None:intergenic 50.0%
! GCCGATTCCAGCCAAAACTT+TGG - tig0023091:73649-73668 Msa1404860:intron 50.0%
! ATCTACCTTGATGGGGTGCT+TGG - tig0023091:73675-73694 Msa1404860:intron 50.0%
TCTATCCAAGCACCCCATCA+AGG + tig0023091:73683-73702 None:intergenic 50.0%
TCAGCAGTGTAAGGTGAAGC+AGG - tig0023091:73747-73766 Msa1404860:intron 50.0%
GGTGACATGTCCAGTGAGAA+TGG + tig0023091:73892-73911 None:intergenic 50.0%
TCAGGCTCATCCCCATCAAA+AGG + tig0023091:73964-73983 None:intergenic 50.0%
! TTTGCTGTCGTCACTCACTC+TGG - tig0023091:74018-74037 Msa1404860:CDS 50.0%
AAACATTGTGAGGGCTGCTC+AGG - tig0023091:74131-74150 Msa1404860:CDS 50.0%
AACATTGTGAGGGCTGCTCA+GGG - tig0023091:74132-74151 Msa1404860:CDS 50.0%
AAGCATCAAAGAGGGGAGGA+GGG + tig0023091:74537-74556 None:intergenic 50.0%
! AAAGCATCAAAGAGGGGAGG+AGG + tig0023091:74538-74557 None:intergenic 50.0%
AGGAGACTTAAGGTCCCATC+AGG - tig0023091:74754-74773 Msa1404860:five_prime_UTR 50.0%
ATGGAGCGAAAGAGGTGGGA+TGG - tig0023091:70013-70032 Msa1404860:three_prime_UTR 55.0%
TGGAGCGAAAGAGGTGGGAT+GGG - tig0023091:70014-70033 Msa1404860:three_prime_UTR 55.0%
GGGCTGCGCTTCACTCAATA+TGG + tig0023091:70078-70097 None:intergenic 55.0%
TTCAGAGTGGGAGGGAATGG+AGG + tig0023091:70125-70144 None:intergenic 55.0%
GGCTGAGATTCAGAGTGGGA+GGG + tig0023091:70133-70152 None:intergenic 55.0%
GCTAAGTGGGGACATGGTTG+TGG + tig0023091:70267-70286 None:intergenic 55.0%
AACTCGGCTAAGTGGGGACA+TGG + tig0023091:70273-70292 None:intergenic 55.0%
!! ATGGTTTGGTGGAAGAGCGG+CGG + tig0023091:70296-70315 None:intergenic 55.0%
! GAGGGAGAGGAATGGTTTGG+TGG + tig0023091:70307-70326 None:intergenic 55.0%
TCTCCCTCCATAACTGCCTC+CGG - tig0023091:70319-70338 Msa1404860:three_prime_UTR 55.0%
GATCCGGAGGCAGTTATGGA+GGG + tig0023091:70325-70344 None:intergenic 55.0%
TGATCCGGAGGCAGTTATGG+AGG + tig0023091:70326-70345 None:intergenic 55.0%
ATTCCTCACTGCAACGCCTG+CGG - tig0023091:70390-70409 Msa1404860:three_prime_UTR 55.0%
TGAGATGCAGGCATAGAGGC+GGG + tig0023091:70430-70449 None:intergenic 55.0%
CGCATGAGATGCAGGCATAG+AGG + tig0023091:70434-70453 None:intergenic 55.0%
TCATGTCACTCTTCCACCGC+CGG - tig0023091:70462-70481 Msa1404860:three_prime_UTR 55.0%
CATGCCGCATCAATGTCTCC+TGG - tig0023091:70507-70526 Msa1404860:three_prime_UTR 55.0%
CAGACCGTTGCGTCCACAAT+CGG - tig0023091:70630-70649 Msa1404860:three_prime_UTR 55.0%
TCGCGTAGATCCGGAGTTGA+AGG + tig0023091:70741-70760 None:intergenic 55.0%
CAACGTTCCTGATTTCCCGC+GGG - tig0023091:70794-70813 Msa1404860:CDS 55.0%
AACGTTCCTGATTTCCCGCG+GGG - tig0023091:70795-70814 Msa1404860:CDS 55.0%
TGTTTCACACGCCACCGTTG+AGG - tig0023091:70877-70896 Msa1404860:CDS 55.0%
GAAATGCAGGGCGAGGGTTT+AGG - tig0023091:72475-72494 Msa1404860:intron 55.0%
! GGTCTCTTGCTTGTTGCCCT+AGG - tig0023091:72496-72515 Msa1404860:intron 55.0%
GCTAAGGCAACTTTCTCCCG+GGG + tig0023091:72731-72750 None:intergenic 55.0%
TGGACTGCACTCCTGCATAG+AGG - tig0023091:73007-73026 Msa1404860:intron 55.0%
GGACTGCACTCCTGCATAGA+GGG - tig0023091:73008-73027 Msa1404860:intron 55.0%
TCGGCCTCACCATTGCAAGA+AGG + tig0023091:73634-73653 None:intergenic 55.0%
AGCATCAAAGAGGGGAGGAG+GGG + tig0023091:74536-74555 None:intergenic 55.0%
GCGAAAGAGGTGGGATGGGA+TGG - tig0023091:70018-70037 Msa1404860:three_prime_UTR 60.0%
CGGCTGAGATTCAGAGTGGG+AGG + tig0023091:70134-70153 None:intergenic 60.0%
GGAGGCAGTTATGGAGGGAG+AGG + tig0023091:70320-70339 None:intergenic 60.0%
TGCCTCCGGATCAAACCTCC+CGG - tig0023091:70333-70352 Msa1404860:three_prime_UTR 60.0%
TTCGTGAGGATCACGGCGGA+GGG + tig0023091:70370-70389 None:intergenic 60.0%
TTTCGTGAGGATCACGGCGG+AGG + tig0023091:70371-70390 None:intergenic 60.0%
ATGCAGGCATAGAGGCGGGA+AGG + tig0023091:70426-70445 None:intergenic 60.0%
TACAGCGGCGCATGAGATGC+AGG + tig0023091:70442-70461 None:intergenic 60.0%
GTGAGAAATGACACCGGCGG+TGG + tig0023091:70478-70497 None:intergenic 60.0%
GGCGTGAGAAATGACACCGG+CGG + tig0023091:70481-70500 None:intergenic 60.0%
GGCGGCGTGAGAAATGACAC+CGG + tig0023091:70484-70503 None:intergenic 60.0%
CATTGATGCGGCATGTGCGG+CGG + tig0023091:70502-70521 None:intergenic 60.0%
CTGCTGCGTTTGCCGTGATC+AGG - tig0023091:70569-70588 Msa1404860:three_prime_UTR 60.0%
GGTCTGTGCGATCACGACTG+CGG + tig0023091:70616-70635 None:intergenic 60.0%
! GTCGCCGATTGTGGACGCAA+CGG + tig0023091:70637-70656 None:intergenic 60.0%
GTTGCGTCCACAATCGGCGA+CGG - tig0023091:70636-70655 Msa1404860:three_prime_UTR 60.0%
!! TCTCAGAAAGCGTCGCCGAG+TGG - tig0023091:70707-70726 Msa1404860:CDS 60.0%
AGAGCGCGTTCGCGTAGATC+CGG + tig0023091:70750-70769 None:intergenic 60.0%
CTACGCGAACGCGCTCTGAT+CGG - tig0023091:70753-70772 Msa1404860:CDS 60.0%
CTGATTTCCCGCGGGGATTG+CGG - tig0023091:70802-70821 Msa1404860:CDS 60.0%
TGATTTCCCGCGGGGATTGC+GGG - tig0023091:70803-70822 Msa1404860:CDS 60.0%
CGGCGGAACTCGGCTAAGTG+GGG + tig0023091:70279-70298 None:intergenic 65.0%
GCGGCGGAACTCGGCTAAGT+GGG + tig0023091:70280-70299 None:intergenic 65.0%
AGCGGCGGAACTCGGCTAAG+TGG + tig0023091:70281-70300 None:intergenic 65.0%
GGTGGAAGAGCGGCGGAACT+CGG + tig0023091:70289-70308 None:intergenic 65.0%
CTCCGGATCAAACCTCCCGG+CGG - tig0023091:70336-70355 Msa1404860:three_prime_UTR 65.0%
! AGACCGCAGGCGTTGCAGTG+AGG + tig0023091:70396-70415 None:intergenic 65.0%
GGAAGGAGCAGAGAGACCGC+AGG + tig0023091:70409-70428 None:intergenic 65.0%
CGCAATCCCCGCGGGAAATC+AGG + tig0023091:70804-70823 None:intergenic 65.0%
GATTTCCCGCGGGGATTGCG+GGG - tig0023091:70804-70823 Msa1404860:CDS 65.0%
ATTTCCCGCGGGGATTGCGG+GGG - tig0023091:70805-70824 Msa1404860:CDS 65.0%
TTCAACCCCCGCAATCCCCG+CGG + tig0023091:70813-70832 None:intergenic 65.0%
CGCCGGGAGGTTTGATCCGG+AGG + tig0023091:70338-70357 None:intergenic 70.0%
GGCCGCCGGGAGGTTTGATC+CGG + tig0023091:70341-70360 None:intergenic 70.0%
GTGAGGATCACGGCGGAGGG+AGG + tig0023091:70367-70386 None:intergenic 70.0%
TCAACCCCCGCAATCCCCGC+GGG + tig0023091:70812-70831 None:intergenic 70.0%
GATCACGGCGGAGGGAGGCG+CGG + tig0023091:70362-70381 None:intergenic 75.0%
!! AGGGAGGCGCGGCCGCCGGG+AGG + tig0023091:70351-70370 None:intergenic 90.0%
!! CGGAGGGAGGCGCGGCCGCC+GGG + tig0023091:70354-70373 None:intergenic 90.0%
!! GCGGAGGGAGGCGCGGCCGC+CGG + tig0023091:70355-70374 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0023091 gene 70007 74895 70007 ID=Msa1404860;Name=Msa1404860
tig0023091 mRNA 70007 74895 70007 ID=Msa1404860-mRNA-1;Parent=Msa1404860;Name=Msa1404860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=227|0.4|0.66|1|0.8|0.66|6|494|670
tig0023091 exon 70007 70068 70007 ID=Msa1404860-mRNA-1:exon:23835;Parent=Msa1404860-mRNA-1
tig0023091 exon 70249 71441 70249 ID=Msa1404860-mRNA-1:exon:23834;Parent=Msa1404860-mRNA-1
tig0023091 exon 71865 71973 71865 ID=Msa1404860-mRNA-1:exon:23833;Parent=Msa1404860-mRNA-1
tig0023091 exon 72305 72418 72305 ID=Msa1404860-mRNA-1:exon:23832;Parent=Msa1404860-mRNA-1
tig0023091 exon 73391 73526 73391 ID=Msa1404860-mRNA-1:exon:23831;Parent=Msa1404860-mRNA-1
tig0023091 exon 73776 74895 73776 ID=Msa1404860-mRNA-1:exon:23830;Parent=Msa1404860-mRNA-1
tig0023091 five_prime_UTR 74669 74895 74669 ID=Msa1404860-mRNA-1:five_prime_utr;Parent=Msa1404860-mRNA-1
tig0023091 CDS 73776 74668 73776 ID=Msa1404860-mRNA-1:cds;Parent=Msa1404860-mRNA-1
tig0023091 CDS 73391 73526 73391 ID=Msa1404860-mRNA-1:cds;Parent=Msa1404860-mRNA-1
tig0023091 CDS 72305 72418 72305 ID=Msa1404860-mRNA-1:cds;Parent=Msa1404860-mRNA-1
tig0023091 CDS 71865 71973 71865 ID=Msa1404860-mRNA-1:cds;Parent=Msa1404860-mRNA-1
tig0023091 CDS 70681 71441 70681 ID=Msa1404860-mRNA-1:cds;Parent=Msa1404860-mRNA-1
tig0023091 three_prime_UTR 70249 70680 70249 ID=Msa1404860-mRNA-1:three_prime_utr;Parent=Msa1404860-mRNA-1
tig0023091 three_prime_UTR 70007 70068 70007 ID=Msa1404860-mRNA-1:three_prime_utr;Parent=Msa1404860-mRNA-1
Gene Sequence

>Msa1404860

ATGTCCTCCAAAATCAACGGTCAGATTTCACCACAACCATGTCCCCACTTAGCCGAGTTCCGCCGCTCTTCCACCAAACCATTCCTCTCCCTCCATAACTGCCTCCGGATCAAACCTCCCGGCGGCCGCGCCTCCCTCCGCCGTGATCCTCACGAAATTCCTCACTGCAACGCCTGCGGTCTCTCTGCTCCTTCCCGCCTCTATGCCTGCATCTCATGCGCCGCTGTATCATGTCACTCTTCCACCGCCGGTGTCATTTCTCACGCCGCCGCACATGCCGCATCAATGTCTCCTGGTCATCAGATCGCAATCGACGTCGATCGTGCCGAGCTTTTCTGCTGCGTTTGCCGTGATCAGGTTTACGATCGTGATTTCGACGCCGCAGTCGTGATCGCACAGACCGTTGCGTCCACAATCGGCGACGGAGAAAAATCAACAGTGATCCCTATGTCATCTACTCCGCATCCGGAGAATCTCAGAAAGCGTCGCCGAGTGGATTACCGTCCTTCAACTCCGGATCTACGCGAACGCGCTCTGATCGGAAGTTGTTCTTCTCCGATCAACGTTCCTGATTTCCCGCGGGGATTGCGGGGGTTGAACAATCTCGGAAACACTTGTTTCATGAATTCGGTGTTGCAGGCTTTGTTTCACACGCCACCGTTGAGGAATTACTTCCTGAGTGATAAGCATAATCGGTACTTTTGCCAGAAAATGAGCAATGCTGATGATGCCGCAAATGGTGATGATTCTGCCATAGCAACTGCGAAAAGAAATGGAGAGAACAATGGAACAAAAAATGGACGATTATGCTTAGCTTGTGATATGGATGCTATGTTCTCTGCTGTTTTTTCGGGAGACCGTCTTCCCTATAGCCCAGCAAAGTTCTTGTACAGTTGGTGGCAGCATGCAGCCAAGTCCAACCTTGCAAGCTATGAACAACAGGATGCACATGAATTTTTCATTTCAATGCTTGATGGGATCCATGAAAAGGTGGACAAGGATCGACGTAAGCCACACAATGAAGGTAATGGCGAGGGTTTAGGTCTCTTGCTTGTTGCCCTAGGAGTTGACATTGATCAGACAGTTAGTGCTTATTCTCAATCACACCTGTGCTATCTCGATGGTGTTAGCGGCTACCTTCCTTTCCTTGTCCTCCTTAATCTCAATCAGAAGCCCATAATTAGGACCCTGTTTGTTCCAGAATCAGTTCAGAATGTGTTTTGGACTGCACTCCTGCATAGAGGGAGTATGGGCAGCGATTGTTGTATTGCTCATAGGGTATTCTCTGGTATTTTGCGGTCAGATGTTATGTGTATGGCCTGTGGTTTCACATCAACAACTTATGACCCATGCGTAGACATCTCACTTGACTTGGAACCAAATCAAGGGGGTTCTACTAAGATGGCTGCTGCAGCTTCCAATCCTTCTTGCAATGGTGAGGCCGATTCCAGCCAAAACTTTGGGATATCTACCTTGATGGGGTGCTTGGATAGATTTACAAGAGCAGAGAAATTGGGGTCAAACCAGAAGTTTTTCTGTCAGCAGTGTAAGGTGAAGCAGGAAACTCTCAAGCAGATGTCCATAAGGAAGCTTCCCCTTGTTTCTTGCTTCCATATAAAAAGATTTGAGCACTCTTCAAGAAAAAAAATGTCAAGGAAGGTGGACCGTTATTTGCAGTTCCCATTCTCACTGGACATGTCACCTTATCTCTCATCCTCAATCTTAAGGAGTCGGTTTGGTAACAGAATATTTCCTTTTGATGGGGATGAGCCTGATGCTTCAAATGATCTATGTTCTGAGTTTGAATTGTTTGCTGTCGTCACTCACTCTGGTAAGTTAGATGCTGGTCATTATGTGACATATCTGCGATTAAGCAATCAATGGTACAAGTGTGATGATTCTTGGGTTACTCAAGTTGATGAAAACATTGTGAGGGCTGCTCAGGGTTATATGATGTTCTATGTACAGAAGATGCTTTACTATAAAGCAACTGATAAATCGGTTGCCTCATGA
Protein sequence

>Msa1404860

MSSKINGQISPQPCPHLAEFRRSSTKPFLSLHNCLRIKPPGGRASLRRDPHEIPHCNACGLSAPSRLYACISCAAVSCHSSTAGVISHAAAHAASMSPGHQIAIDVDRAELFCCVCRDQVYDRDFDAAVVIAQTVASTIGDGEKSTVIPMSSTPHPENLRKRRRVDYRPSTPDLRERALIGSCSSPINVPDFPRGLRGLNNLGNTCFMNSVLQALFHTPPLRNYFLSDKHNRYFCQKMSNADDAANGDDSAIATAKRNGENNGTKNGRLCLACDMDAMFSAVFSGDRLPYSPAKFLYSWWQHAAKSNLASYEQQDAHEFFISMLDGIHEKVDKDRRKPHNEGNGEGLGLLLVALGVDIDQTVSAYSQSHLCYLDGVSGYLPFLVLLNLNQKPIIRTLFVPESVQNVFWTALLHRGSMGSDCCIAHRVFSGILRSDVMCMACGFTSTTYDPCVDISLDLEPNQGGSTKMAAAASNPSCNGEADSSQNFGISTLMGCLDRFTRAEKLGSNQKFFCQQCKVKQETLKQMSIRKLPLVSCFHIKRFEHSSRKKMSRKVDRYLQFPFSLDMSPYLSSSILRSRFGNRIFPFDGDEPDASNDLCSEFELFAVVTHSGKLDAGHYVTYLRLSNQWYKCDDSWVTQVDENIVRAAQGYMMFYVQKMLYYKATDKSVAS*