Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405170 | AES88900.2 | 77.966 | 236 | 10 | 2 | 1 | 194 | 1 | 236 | 1.85e-113 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405170 | sp|Q9M2S6|SDIR1_ARATH | 50.427 | 234 | 74 | 4 | 1 | 194 | 1 | 232 | 5.79e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405170 | G7JUX0 | 77.966 | 236 | 10 | 2 | 1 | 194 | 1 | 236 | 8.83e-114 | 334 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0644570 | Msa1405170 | 0.843470 | 1.374195e-58 | -8.615850e-47 |
| Msa0548600 | Msa1405170 | 0.860144 | 2.533957e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405170 | MtrunA17_Chr4g0031911 | 81.739 | 230 | 6 | 1 | 1 | 194 | 1 | 230 | 3.90e-116 | 331 |
| Msa1405170 | MtrunA17_Chr4g0031921 | 81.304 | 230 | 7 | 1 | 1 | 194 | 1 | 230 | 4.11e-112 | 320 |
| Msa1405170 | MtrunA17_Chr3g0112041 | 48.718 | 234 | 80 | 2 | 1 | 194 | 1 | 234 | 4.89e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1405170 | AT3G55530.1 | 50.427 | 234 | 74 | 4 | 1 | 194 | 1 | 232 | 5.88e-62 | 194 |
Find 55 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCATGCTGCAGCAGCCTC+TGG | 0.223994 | tig0023110:+17588 | Msa1405170:CDS |
| ACTTTGAGGGTTCTTGCTTT+TGG | 0.278588 | tig0023110:+17871 | Msa1405170:CDS |
| ACTATCACAACTTACTCTAT+TGG | 0.301919 | tig0023110:-17958 | Msa1405170:intergenic |
| GTAACTTTATGTTTGTGAAT+AGG | 0.332856 | tig0023110:-17931 | Msa1405170:intergenic |
| GGCTGCTGCAGCATGAGCCC+TGG | 0.341598 | tig0023110:-17583 | Msa1405170:intergenic |
| GCAGCAGCCTCTGGGTTACT+TGG | 0.350465 | tig0023110:+17597 | Msa1405170:CDS |
| ATTCACAAACATAAAGTTAC+TGG | 0.368379 | tig0023110:+17934 | Msa1405170:CDS |
| CAACCCATCTTCTTGATCAT+TGG | 0.369702 | tig0023110:-18438 | Msa1405170:intergenic |
| CTATCACAACTTACTCTATT+GGG | 0.378302 | tig0023110:-17957 | Msa1405170:intergenic |
| TAGCTTGCCATGCTTGCATC+AGG | 0.383595 | tig0023110:+18508 | Msa1405170:CDS |
| CTCATGCTGCAGCAGCCTCT+GGG | 0.394979 | tig0023110:+17589 | Msa1405170:CDS |
| AAATGATGAATGCAAAAGAT+AGG | 0.437325 | tig0023110:-18541 | Msa1405170:intergenic |
| TGCAACAGGAGGAAGATTGC+AGG | 0.437968 | tig0023110:+17662 | Msa1405170:CDS |
| TACATCTTCAAGCACAGGCC+AGG | 0.441686 | tig0023110:+17565 | Msa1405170:CDS |
| TACCTATCTCATTAAAATCT+CGG | 0.454083 | tig0023110:-17713 | Msa1405170:intergenic |
| TGGCAGATTATGACACTTTG+AGG | 0.456834 | tig0023110:+17857 | Msa1405170:intron |
| GAATGGAGTGTAGCTGAGAA+TGG | 0.485471 | tig0023110:-14833 | Msa1405170:intergenic |
| CCATCTATAGCATTTGCAAC+AGG | 0.492962 | tig0023110:+17648 | Msa1405170:CDS |
| CTCGGTCAAGAAGTGCAAGC+TGG | 0.503206 | tig0023110:-17695 | Msa1405170:intergenic |
| CATACCATTGAGGTTCTCTC+AGG | 0.503983 | tig0023110:-16756 | Msa1405170:intergenic |
| CAAGATTTCAAAGGAGAAGA+GGG | 0.508441 | tig0023110:+18410 | Msa1405170:CDS |
| AGTGCCAATGATCAAGAAGA+TGG | 0.508510 | tig0023110:+18434 | Msa1405170:CDS |
| GGCAGATTATGACACTTTGA+GGG | 0.514065 | tig0023110:+17858 | Msa1405170:intron |
| CTCAGCTGCCTCTGAAGAAG+AGG | 0.514485 | tig0023110:-18167 | Msa1405170:intergenic |
| AGTAGGGGAGATATTGAAAA+CGG | 0.519600 | tig0023110:+16717 | Msa1405170:CDS |
| TGAAGAAGAGGATGTCGAAC+CGG | 0.525338 | tig0023110:-18155 | Msa1405170:intergenic |
| CCTGTTGCAAATGCTATAGA+TGG | 0.526351 | tig0023110:-17648 | Msa1405170:intergenic |
| CGTTAAACCTGATGCAAGCA+TGG | 0.528528 | tig0023110:-18515 | Msa1405170:intergenic |
| TTTATGTTTGTGAATAGGCA+AGG | 0.528785 | tig0023110:-17926 | Msa1405170:intergenic |
| TTATCTACATCTTCAAGCAC+AGG | 0.535533 | tig0023110:+17560 | Msa1405170:CDS |
| TGGTACTCGTTCAATGTCTG+AGG | 0.538572 | tig0023110:+17891 | Msa1405170:CDS |
| TACTTACACGAAAATAAGAA+TGG | 0.539458 | tig0023110:-14850 | Msa1405170:intergenic |
| CTCTTCTTCAGAGGCAGCTG+AGG | 0.544800 | tig0023110:+18168 | Msa1405170:CDS |
| ATTAACAGAGATGGCTCCAC+CGG | 0.546192 | tig0023110:+18136 | Msa1405170:intron |
| CAGATTAAACAAGATTTCAA+AGG | 0.550749 | tig0023110:+18401 | Msa1405170:intron |
| AATACTGTCGGTCTTTGTGA+TGG | 0.555712 | tig0023110:+17512 | Msa1405170:CDS |
| TTCGACATCCTCTTCTTCAG+AGG | 0.558298 | tig0023110:+18159 | Msa1405170:CDS |
| ACAAGATTTCAAAGGAGAAG+AGG | 0.559280 | tig0023110:+18409 | Msa1405170:CDS |
| ATGCTTGGACGAAGTTCAGA+GGG | 0.571136 | tig0023110:+18472 | Msa1405170:CDS |
| TGTTCCTGAGAGAACCTCAA+TGG | 0.572879 | tig0023110:+16752 | Msa1405170:CDS |
| GTTGACATGTGCTATATGCT+TGG | 0.578038 | tig0023110:+18457 | Msa1405170:CDS |
| ACATCTTCAAGCACAGGCCA+GGG | 0.583038 | tig0023110:+17566 | Msa1405170:CDS |
| TCAGCGCTGGATAATACTGT+CGG | 0.585921 | tig0023110:+17500 | Msa1405170:intron |
| AATAAGTAATCATACCATTG+AGG | 0.600078 | tig0023110:-16766 | Msa1405170:intergenic |
| GTGCCAATGATCAAGAAGAT+GGG | 0.602726 | tig0023110:+18435 | Msa1405170:CDS |
| TATGCTTGGACGAAGTTCAG+AGG | 0.611074 | tig0023110:+18471 | Msa1405170:CDS |
| TACTCGTTCAATGTCTGAGG+AGG | 0.637939 | tig0023110:+17894 | Msa1405170:CDS |
| AGAAGAGGATGTCGAACCGG+TGG | 0.644248 | tig0023110:-18152 | Msa1405170:intergenic |
| TCTATAGCATTTGCAACAGG+AGG | 0.645431 | tig0023110:+17651 | Msa1405170:CDS |
| CGTGAACTCGTAATTCAGCA+TGG | 0.652635 | tig0023110:-17620 | Msa1405170:intergenic |
| GCTTGGACGAAGTTCAGAGG+GGG | 0.665381 | tig0023110:+18474 | Msa1405170:CDS |
| TGCTTGGACGAAGTTCAGAG+GGG | 0.707377 | tig0023110:+18473 | Msa1405170:CDS |
| CTTGGACGAAGTTCAGAGGG+GGG | 0.711037 | tig0023110:+18475 | Msa1405170:CDS |
| GTTGCAAATGCTATAGATGG+TGG | 0.721197 | tig0023110:-17645 | Msa1405160:intergenic |
| AGCATGGCCAAGTAACCCAG+AGG | 0.745020 | tig0023110:-17604 | Msa1405160:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAATAATCAATTTC+AGG | - | tig0023110:15213-15232 | Msa1405170:intergenic | 10.0% |
| !! | AAAAATAATATATCATTTGA+GGG | - | tig0023110:17408-17427 | Msa1405170:intergenic | 10.0% |
| !! | AAAAAATAATATATCATTTG+AGG | - | tig0023110:17409-17428 | Msa1405170:intergenic | 10.0% |
| !!! | TCAAATGATATATTATTTTT+TGG | + | tig0023110:17408-17427 | Msa1405170:intron | 10.0% |
| !!! | ATTTTCTTCAAAAATGAAAA+TGG | + | tig0023110:16371-16390 | Msa1405170:intron | 15.0% |
| !! | AAAATAATATATCATTTGAG+GGG | - | tig0023110:17407-17426 | Msa1405170:intergenic | 15.0% |
| !! | AAATGTATATATGAACAAAA+AGG | - | tig0023110:17813-17832 | Msa1405170:intergenic | 15.0% |
| !!! | TTATTTTTCTCCCTTAATAT+TGG | + | tig0023110:15109-15128 | Msa1405170:intron | 20.0% |
| !! | ATATAATCTTCAAAGATAGA+CGG | + | tig0023110:15286-15305 | Msa1405170:intron | 20.0% |
| !! | ATATCATTTCTCTAGATATA+CGG | - | tig0023110:15833-15852 | Msa1405170:intergenic | 20.0% |
| !!! | CTTTTCTATAAATAGACAAT+TGG | - | tig0023110:16323-16342 | Msa1405170:intergenic | 20.0% |
| !! | TATAATCAGTTCAATAACTT+TGG | + | tig0023110:16564-16583 | Msa1405170:intron | 20.0% |
| !!! | TACGCTTATCAAAATAATTT+TGG | - | tig0023110:16609-16628 | Msa1405170:intergenic | 20.0% |
| !! | ATCCTTGTGTAATAAATTAA+AGG | + | tig0023110:16628-16647 | Msa1405170:intron | 20.0% |
| !! | TTATGTTAACTTATTTACCA+TGG | - | tig0023110:18107-18126 | Msa1405170:intergenic | 20.0% |
| ! | TACTTACACGAAAATAAGAA+TGG | - | tig0023110:14853-14872 | Msa0217670:intergenic | 25.0% |
| ! | AAGCTAATTTAACTACTCTT+TGG | - | tig0023110:14975-14994 | Msa1405170:intergenic | 25.0% |
| ! | CATATATAAATGCACTATCT+TGG | + | tig0023110:15010-15029 | Msa1405170:intron | 25.0% |
| !!! | TTATGTTGTGGTTTTGATTT+TGG | + | tig0023110:15077-15096 | Msa1405170:intron | 25.0% |
| ! | AACACAATCACCAATATTAA+GGG | - | tig0023110:15122-15141 | Msa1405170:intergenic | 25.0% |
| ! | AAACACAATCACCAATATTA+AGG | - | tig0023110:15123-15142 | Msa1405170:intergenic | 25.0% |
| ! | CCTGAAAAGTAAATAGAAAT+AGG | - | tig0023110:15148-15167 | Msa1405170:intergenic | 25.0% |
| !!! | CCTATTTCTATTTACTTTTC+AGG | + | tig0023110:15145-15164 | Msa1405170:intron | 25.0% |
| ! | GTTCAAAAGTTGTCATAAAA+TGG | - | tig0023110:15864-15883 | Msa1405170:intergenic | 25.0% |
| ! | ACAACAATAGAAAGAGAAAA+AGG | - | tig0023110:15931-15950 | Msa1405170:intergenic | 25.0% |
| !! | TCTTTTTCTCTCTTCATATT+GGG | - | tig0023110:15956-15975 | Msa1405170:intergenic | 25.0% |
| !! | ATCTTTTTCTCTCTTCATAT+TGG | - | tig0023110:15957-15976 | Msa1405170:intergenic | 25.0% |
| ! | AATATGAAGAGAGAAAAAGA+TGG | + | tig0023110:15956-15975 | Msa1405170:intron | 25.0% |
| ! | AACTACACTTAATAGCTATA+CGG | - | tig0023110:16180-16199 | Msa1405170:intergenic | 25.0% |
| ! | GTTTAAGAAAAGATTCGTTT+AGG | + | tig0023110:16254-16273 | Msa1405170:intron | 25.0% |
| !! | ATGTTAAAGTTTTGCAACTT+CGG | + | tig0023110:16418-16437 | Msa1405170:intron | 25.0% |
| ! | GAACTGATTATATCCATTTA+AGG | - | tig0023110:16556-16575 | Msa1405170:intergenic | 25.0% |
| !! | CACCTTTAATTTATTACACA+AGG | - | tig0023110:16633-16652 | Msa1405170:intergenic | 25.0% |
| !!! | GTTGTGTTGTTATCAATTTT+CGG | + | tig0023110:16665-16684 | Msa1405170:five_prime_UTR | 25.0% |
| ! | AATAAGTAATCATACCATTG+AGG | - | tig0023110:16769-16788 | Msa1405170:intergenic | 25.0% |
| !! | TATGAAGCAATAAAGCATTA+GGG | - | tig0023110:17309-17328 | Msa1405170:intergenic | 25.0% |
| !! | ATATGAAGCAATAAAGCATT+AGG | - | tig0023110:17310-17329 | Msa1405170:intergenic | 25.0% |
| ! | TCATATATGTAGAATCTCAA+TGG | + | tig0023110:17324-17343 | Msa1405170:intron | 25.0% |
| ! | ATTTAATGTGTATATGCTAC+TGG | + | tig0023110:17447-17466 | Msa1405170:intron | 25.0% |
| ! | TACCTATCTCATTAAAATCT+CGG | - | tig0023110:17716-17735 | Msa1405170:intergenic | 25.0% |
| !!! | AACAAAAAGGCATTTTCTTT+TGG | - | tig0023110:17800-17819 | Msa1405170:intergenic | 25.0% |
| ! | GTAACTTTATGTTTGTGAAT+AGG | - | tig0023110:17934-17953 | Msa1405170:intergenic | 25.0% |
| ! | ATTCACAAACATAAAGTTAC+TGG | + | tig0023110:17934-17953 | Msa1405170:CDS | 25.0% |
| ! | AATGAATCATAAGTTGTGAT+AGG | + | tig0023110:18002-18021 | Msa1405170:intron | 25.0% |
| ! | TTTGTCTATATTAACAGAGA+TGG | + | tig0023110:18127-18146 | Msa1405170:intron | 25.0% |
| ! | GTTTAATCTGATTCAAACAT+TGG | - | tig0023110:18391-18410 | Msa1405170:intergenic | 25.0% |
| ! | CAGATTAAACAAGATTTCAA+AGG | + | tig0023110:18401-18420 | Msa1405170:intron | 25.0% |
| TACGAAAACAGTGACAATTA+AGG | - | tig0023110:14898-14917 | Msa0217670:intergenic | 30.0% | |
| ! | TTTACAAGAACCGTTTTGTA+AGG | + | tig0023110:15371-15390 | Msa1405170:intron | 30.0% |
| ! | TTACAAGAACCGTTTTGTAA+GGG | + | tig0023110:15372-15391 | Msa1405170:intron | 30.0% |
| TTAACTCTACCCTTACAAAA+CGG | - | tig0023110:15384-15403 | Msa1405170:intergenic | 30.0% | |
| GAAGCCAATTAACTATTTGT+AGG | + | tig0023110:15609-15628 | Msa1405170:intron | 30.0% | |
| AACTACACTTCATAGCTATA+CGG | - | tig0023110:15655-15674 | Msa1405170:intergenic | 30.0% | |
| GAAGCCAATTATCTATTTGT+AGG | + | tig0023110:15787-15806 | Msa1405170:intron | 30.0% | |
| GAAGCCAATTATCTATTTGT+AGG | + | tig0023110:15787-15806 | Msa1405170:intron | 30.0% | |
| CCAATTATCTATTTGTAGGT+CGG | + | tig0023110:16138-16157 | Msa1405170:intron | 30.0% | |
| !! | TGCTTTGTTTGTTCCTTAAA+TGG | + | tig0023110:16540-16559 | Msa1405170:intron | 30.0% |
| ! | ATTAAAGGTGTAATACTTGC+AGG | + | tig0023110:16643-16662 | Msa1405170:intron | 30.0% |
| !!! | AAACTGTTTTGGAGAACTTA+CGG | + | tig0023110:17035-17054 | Msa1405170:intron | 30.0% |
| TTTGTTTCCATAAACTTTCC+AGG | + | tig0023110:17093-17112 | Msa1405170:intron | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | - | tig0023110:17103-17122 | Msa1405170:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGTTATCC+TGG | - | tig0023110:17114-17133 | Msa1405170:intergenic | 30.0% |
| ACCCTTTGCATCTAATAAAA+GGG | + | tig0023110:17217-17236 | Msa1405170:intron | 30.0% | |
| ! | ACCCTTTTATTAGATGCAAA+GGG | - | tig0023110:17221-17240 | Msa1405170:intergenic | 30.0% |
| !! | ATAAAAGGGTGCTTAGATAT+AGG | + | tig0023110:17231-17250 | Msa1405170:intron | 30.0% |
| !! | TAAAAGGGTGCTTAGATATA+GGG | + | tig0023110:17232-17251 | Msa1405170:intron | 30.0% |
| !!! | TTGCTTTTTGCTTCATTTTG+TGG | + | tig0023110:17837-17856 | Msa1405170:intron | 30.0% |
| TTTATGTTTGTGAATAGGCA+AGG | - | tig0023110:17929-17948 | Msa1405170:intergenic | 30.0% | |
| CTATCACAACTTACTCTATT+GGG | - | tig0023110:17960-17979 | Msa1405170:intergenic | 30.0% | |
| ACTATCACAACTTACTCTAT+TGG | - | tig0023110:17961-17980 | Msa1405170:intergenic | 30.0% | |
| GTTATCTAAACCTTTGCTTA+TGG | + | tig0023110:18202-18221 | Msa1405170:intron | 30.0% | |
| ACCTTTGCTTATGGTTTATT+TGG | + | tig0023110:18211-18230 | Msa1405170:intron | 30.0% | |
| ACCAAATAAACCATAAGCAA+AGG | - | tig0023110:18215-18234 | Msa1405170:intergenic | 30.0% | |
| !!! | GCATCTATTGTTTTTTGCTT+CGG | + | tig0023110:18288-18307 | Msa1405170:intron | 30.0% |
| !!! | CTTTTTTATTTCCCTGGAAT+AGG | + | tig0023110:18343-18362 | Msa1405170:intron | 30.0% |
| TAAAATCTCTTCCTATTCCA+GGG | - | tig0023110:18357-18376 | Msa1405170:intergenic | 30.0% | |
| ! | ACTGTTTTCGTAACTGTACA+AGG | + | tig0023110:14906-14925 | Msa1405170:intron | 35.0% |
| TCACATGAAGAGTTATGTTG+TGG | + | tig0023110:15065-15084 | Msa1405170:intron | 35.0% | |
| !!! | TGTTGTGGTTTTGATTTTGG+TGG | + | tig0023110:15080-15099 | Msa1405170:intron | 35.0% |
| ! | TCCAGGCTTTTCATCTAATA+CGG | - | tig0023110:15320-15339 | Msa1405170:intergenic | 35.0% |
| CCAATTGTAAACACAATTCC+AGG | - | tig0023110:15337-15356 | Msa1405170:intergenic | 35.0% | |
| CCTGGAATTGTGTTTACAAT+TGG | + | tig0023110:15334-15353 | Msa1405170:intron | 35.0% | |
| GGAATTGTGTTTACAATTGG+TGG | + | tig0023110:15337-15356 | Msa1405170:intron | 35.0% | |
| CTGATGTCGTCTTAGAATTT+GGG | - | tig0023110:15413-15432 | Msa1405170:intergenic | 35.0% | |
| TCTGATGTCGTCTTAGAATT+TGG | - | tig0023110:15414-15433 | Msa1405170:intergenic | 35.0% | |
| TTAGTCATCACCTTATAAGC+CGG | + | tig0023110:15522-15541 | Msa1405170:intron | 35.0% | |
| CGAATCTATTCTTACAACAC+CGG | - | tig0023110:15544-15563 | Msa1405170:intergenic | 35.0% | |
| CCAATTAACTATTTGTAGGC+CGG | + | tig0023110:15613-15632 | Msa1405170:intron | 35.0% | |
| CGGATCTATTCTTACAAAAC+CGG | - | tig0023110:15635-15654 | Msa1405170:intergenic | 35.0% | |
| CGAATCTATTCTTACAACAC+CGG | - | tig0023110:15544-15563 | Msa1405170:intergenic | 35.0% | |
| CCAATTATCTATTTGTAGGC+CGG | + | tig0023110:15791-15810 | Msa1405170:intron | 35.0% | |
| TCACAAGAGTTGTCACAAAA+TGG | + | tig0023110:15982-16001 | Msa1405170:intron | 35.0% | |
| CCAATTACCCATTTGTAAGA+CGG | + | tig0023110:16047-16066 | Msa1405170:intron | 35.0% | |
| TACAACACCGTCTTACAAAT+GGG | - | tig0023110:16057-16076 | Msa1405170:intergenic | 35.0% | |
| TTACAACACCGTCTTACAAA+TGG | - | tig0023110:16058-16077 | Msa1405170:intergenic | 35.0% | |
| CCGACCTACAAATAGATAAT+TGG | - | tig0023110:16141-16160 | Msa1405170:intergenic | 35.0% | |
| CCAATTATCCATTTGTAAGC+CGG | + | tig0023110:16229-16248 | Msa1405170:intron | 35.0% | |
| ! | CGAATCTTTTCTTAAACCAC+CGG | - | tig0023110:16251-16270 | Msa1405170:intergenic | 35.0% |
| !! | TCATGAGTTTTGCTTTTCGA+GGG | + | tig0023110:16694-16713 | Msa1405170:exon | 35.0% |
| AGTAGGGGAGATATTGAAAA+CGG | + | tig0023110:16717-16736 | Msa1405170:CDS | 35.0% | |
| GAAAAACCAGACAATTGCTA+TGG | - | tig0023110:16946-16965 | Msa1405170:intergenic | 35.0% | |
| !!! | TGTCTGGTTTTTCTTTTTGC+CGG | + | tig0023110:16953-16972 | Msa1405170:intron | 35.0% |
| TTGGCAAGTGTTTATGTTAG+TGG | - | tig0023110:17017-17036 | Msa1405170:intergenic | 35.0% | |
| ! | AAACACTTGCCAAACTGTTT+TGG | + | tig0023110:17024-17043 | Msa1405170:intron | 35.0% |
| GTAAGTTCTCCAAAACAGTT+TGG | - | tig0023110:17036-17055 | Msa1405170:intergenic | 35.0% | |
| CACCCTTTGCATCTAATAAA+AGG | + | tig0023110:17216-17235 | Msa1405170:intron | 35.0% | |
| ! | CACCCTTTTATTAGATGCAA+AGG | - | tig0023110:17222-17241 | Msa1405170:intergenic | 35.0% |
| CTGAAAAGGATAAAGGTCAA+TGG | - | tig0023110:17484-17503 | Msa1405170:intergenic | 35.0% | |
| TTATCTACATCTTCAAGCAC+AGG | + | tig0023110:17560-17579 | Msa1405170:CDS | 35.0% | |
| !! | GACCGAGATTTTAATGAGAT+AGG | + | tig0023110:17711-17730 | Msa1405170:CDS | 35.0% |
| ! | ATGCTTCTGAATTGCACTTT+TGG | + | tig0023110:17738-17757 | Msa1405170:intron | 35.0% |
| TTGTGATAGGTTCTTGTAGA+AGG | + | tig0023110:18015-18034 | Msa1405170:intron | 35.0% | |
| TAGAAGGTAAAGTGGTTAAC+AGG | + | tig0023110:18031-18050 | Msa1405170:intron | 35.0% | |
| ! | TTTAATGAAGTGCTAAGCCA+TGG | + | tig0023110:18087-18106 | Msa1405170:intron | 35.0% |
| CGTAACTCAAACAACTTAGT+GGG | - | tig0023110:18238-18257 | Msa1405170:intergenic | 35.0% | |
| TCGTAACTCAAACAACTTAG+TGG | - | tig0023110:18239-18258 | Msa1405170:intergenic | 35.0% | |
| ! | CTAAGTTGTTTGAGTTACGA+AGG | + | tig0023110:18239-18258 | Msa1405170:intron | 35.0% |
| CCAGGGAAATAAAAAAGTTG+TGG | - | tig0023110:18340-18359 | Msa1405170:intergenic | 35.0% | |
| !!! | CCACAACTTTTTTATTTCCC+TGG | + | tig0023110:18337-18356 | Msa1405170:intron | 35.0% |
| CTAAAATCTCTTCCTATTCC+AGG | - | tig0023110:18358-18377 | Msa1405170:intergenic | 35.0% | |
| ACAAGATTTCAAAGGAGAAG+AGG | + | tig0023110:18409-18428 | Msa1405170:CDS | 35.0% | |
| CAAGATTTCAAAGGAGAAGA+GGG | + | tig0023110:18410-18429 | Msa1405170:CDS | 35.0% | |
| ! | CCAGGCTTTTCATCTAATAC+GGG | - | tig0023110:15319-15338 | Msa1405170:intergenic | 40.0% |
| !! | TGGCATAATGGACCATTGAT+AGG | - | tig0023110:15438-15457 | Msa1405170:intergenic | 40.0% |
| !! | TCTTACAACACCGGCTTATA+AGG | - | tig0023110:15535-15554 | Msa1405170:intergenic | 40.0% |
| CCGGCCTACAAATAGTTAAT+TGG | - | tig0023110:15616-15635 | Msa1405170:intergenic | 40.0% | |
| CCAATTATCCATTTGTTCGC+CGG | + | tig0023110:15704-15723 | Msa1405170:intron | 40.0% | |
| CCGGCCTACAAATAGATAAT+TGG | - | tig0023110:15794-15813 | Msa1405170:intergenic | 40.0% | |
| CGGATCTATTCTTGCAAAAC+CGG | - | tig0023110:15813-15832 | Msa1405170:intergenic | 40.0% | |
| CCGTCTTACAAATGGGTAAT+TGG | - | tig0023110:16050-16069 | Msa1405170:intergenic | 40.0% | |
| CCGGCTTACAAATGGATAAT+TGG | - | tig0023110:16232-16251 | Msa1405170:intergenic | 40.0% | |
| ATTATCCATTTGTAAGCCGG+TGG | + | tig0023110:16232-16251 | Msa1405170:intron | 40.0% | |
| !! | TTAAACCACCGGCTTACAAA+TGG | - | tig0023110:16240-16259 | Msa1405170:intergenic | 40.0% |
| TAGTCAAGACCATGTGCTAA+AGG | + | tig0023110:16344-16363 | Msa1405170:intron | 40.0% | |
| AAAATCCGACCTTTAGCACA+TGG | - | tig0023110:16356-16375 | Msa1405170:intergenic | 40.0% | |
| TTGCGTGTCTGAAAATCTGT+AGG | + | tig0023110:16467-16486 | Msa1405170:intron | 40.0% | |
| TGCGTGTCTGAAAATCTGTA+GGG | + | tig0023110:16468-16487 | Msa1405170:intron | 40.0% | |
| !! | GTCATGAGTTTTGCTTTTCG+AGG | + | tig0023110:16693-16712 | Msa1405170:exon | 40.0% |
| !! | TTTTGCTTTTCGAGGGAGTA+GGG | + | tig0023110:16701-16720 | Msa1405170:CDS | 40.0% |
| ! | AGTATTATCCAGCGCTGAAA+AGG | - | tig0023110:17498-17517 | Msa1405170:intergenic | 40.0% |
| AATACTGTCGGTCTTTGTGA+TGG | + | tig0023110:17512-17531 | Msa1405170:CDS | 40.0% | |
| GTTGCAAATGCTATAGATGG+TGG | - | tig0023110:17648-17667 | Msa1405170:intergenic | 40.0% | |
| CCTGTTGCAAATGCTATAGA+TGG | - | tig0023110:17651-17670 | Msa1405170:intergenic | 40.0% | |
| CCATCTATAGCATTTGCAAC+AGG | + | tig0023110:17648-17667 | Msa1405170:CDS | 40.0% | |
| TCTATAGCATTTGCAACAGG+AGG | + | tig0023110:17651-17670 | Msa1405170:CDS | 40.0% | |
| TGGCAGATTATGACACTTTG+AGG | + | tig0023110:17857-17876 | Msa1405170:intron | 40.0% | |
| GGCAGATTATGACACTTTGA+GGG | + | tig0023110:17858-17877 | Msa1405170:intron | 40.0% | |
| !! | ACTTTGAGGGTTCTTGCTTT+TGG | + | tig0023110:17871-17890 | Msa1405170:CDS | 40.0% |
| GGTTCTTGTAGAAGGTAAAG+TGG | + | tig0023110:18023-18042 | Msa1405170:intron | 40.0% | |
| AAAAACGCAGACACGCAAAA+TGG | - | tig0023110:18068-18087 | Msa1405170:intergenic | 40.0% | |
| AGTGCCAATGATCAAGAAGA+TGG | + | tig0023110:18434-18453 | Msa1405170:CDS | 40.0% | |
| GTGCCAATGATCAAGAAGAT+GGG | + | tig0023110:18435-18454 | Msa1405170:CDS | 40.0% | |
| CAACCCATCTTCTTGATCAT+TGG | - | tig0023110:18441-18460 | Msa1405170:intergenic | 40.0% | |
| GTTGACATGTGCTATATGCT+TGG | + | tig0023110:18457-18476 | Msa1405170:CDS | 40.0% | |
| GAATGGAGTGTAGCTGAGAA+TGG | - | tig0023110:14836-14855 | Msa0217670:intergenic | 45.0% | |
| CCCGTATTAGATGAAAAGCC+TGG | + | tig0023110:15316-15335 | Msa1405170:intron | 45.0% | |
| ACGACATCAGAGCCTATCAA+TGG | + | tig0023110:15423-15442 | Msa1405170:intron | 45.0% | |
| !! | AGCAAGTGGCATTGGCATAA+TGG | - | tig0023110:15450-15469 | Msa1405170:intergenic | 45.0% |
| ATGTCTGATCCTATGCGTGA+AGG | + | tig0023110:15496-15515 | Msa1405170:intron | 45.0% | |
| TGTCTGATCCTATGCGTGAA+GGG | + | tig0023110:15497-15516 | Msa1405170:intron | 45.0% | |
| CCGGCGAACAAATGGATAAT+TGG | - | tig0023110:15707-15726 | Msa1405170:intergenic | 45.0% | |
| TTACAACACCGGCGAACAAA+TGG | - | tig0023110:15715-15734 | Msa1405170:intergenic | 45.0% | |
| CAAGACCATGTGCTAAAGGT+CGG | + | tig0023110:16348-16367 | Msa1405170:intron | 45.0% | |
| !! | GTTTTGCTTTTCGAGGGAGT+AGG | + | tig0023110:16700-16719 | Msa1405170:CDS | 45.0% |
| !! | TTTGCTTTTCGAGGGAGTAG+GGG | + | tig0023110:16702-16721 | Msa1405170:CDS | 45.0% |
| TGTTCCTGAGAGAACCTCAA+TGG | + | tig0023110:16752-16771 | Msa1405170:CDS | 45.0% | |
| CATACCATTGAGGTTCTCTC+AGG | - | tig0023110:16759-16778 | Msa1405170:intergenic | 45.0% | |
| !!! | GCTGCTCTTTTTTACCTCAG+CGG | + | tig0023110:16900-16919 | Msa1405170:intron | 45.0% |
| !!! | CTGCTCTTTTTTACCTCAGC+GGG | + | tig0023110:16901-16920 | Msa1405170:intron | 45.0% |
| ACCAGACAATTGCTATGGAC+TGG | - | tig0023110:16941-16960 | Msa1405170:intergenic | 45.0% | |
| ! | TTTTCTTTTTGCCGGTGAGC+AGG | + | tig0023110:16961-16980 | Msa1405170:intron | 45.0% |
| ! | TTTCTTTTTGCCGGTGAGCA+GGG | + | tig0023110:16962-16981 | Msa1405170:intron | 45.0% |
| TTAATGTAGACCCTGCTCAC+CGG | - | tig0023110:16975-16994 | Msa1405170:intergenic | 45.0% | |
| !! | GCAAAGGGTGCTTACATACA+GGG | - | tig0023110:17206-17225 | Msa1405170:intergenic | 45.0% |
| !! | TGCAAAGGGTGCTTACATAC+AGG | - | tig0023110:17207-17226 | Msa1405170:intergenic | 45.0% |
| ! | AGGGTGCTTAGATATAGGGA+CGG | + | tig0023110:17236-17255 | Msa1405170:intron | 45.0% |
| TGCTTAGATATAGGGACGGA+GGG | + | tig0023110:17240-17259 | Msa1405170:intron | 45.0% | |
| ! | ACCTTTATCCTTTTCAGCGC+TGG | + | tig0023110:17487-17506 | Msa1405170:intron | 45.0% |
| ! | TCCAGCGCTGAAAAGGATAA+AGG | - | tig0023110:17491-17510 | Msa1405170:intergenic | 45.0% |
| ! | TCAGCGCTGGATAATACTGT+CGG | + | tig0023110:17500-17519 | Msa1405170:intron | 45.0% |
| CGTGAACTCGTAATTCAGCA+TGG | - | tig0023110:17623-17642 | Msa1405170:intergenic | 45.0% | |
| TGGTACTCGTTCAATGTCTG+AGG | + | tig0023110:17891-17910 | Msa1405170:CDS | 45.0% | |
| TACTCGTTCAATGTCTGAGG+AGG | + | tig0023110:17894-17913 | Msa1405170:CDS | 45.0% | |
| ATTAACAGAGATGGCTCCAC+CGG | + | tig0023110:18136-18155 | Msa1405170:intron | 45.0% | |
| TGAAGAAGAGGATGTCGAAC+CGG | - | tig0023110:18158-18177 | Msa1405170:intergenic | 45.0% | |
| TTCGACATCCTCTTCTTCAG+AGG | + | tig0023110:18159-18178 | Msa1405170:CDS | 45.0% | |
| TATGCTTGGACGAAGTTCAG+AGG | + | tig0023110:18471-18490 | Msa1405170:CDS | 45.0% | |
| ATGCTTGGACGAAGTTCAGA+GGG | + | tig0023110:18472-18491 | Msa1405170:CDS | 45.0% | |
| CGTTAAACCTGATGCAAGCA+TGG | - | tig0023110:18518-18537 | Msa1405170:intergenic | 45.0% | |
| !! | ATTTATATATGAATATTTAA+TGG | - | tig0023110:15001-15020 | Msa1405170:intergenic | 5.0% |
| !! | TGCCAATGCCACTTGCTATG+AGG | + | tig0023110:15453-15472 | Msa1405170:intron | 50.0% |
| AGCCTCATAGCAAGTGGCAT+TGG | - | tig0023110:15458-15477 | Msa1405170:intergenic | 50.0% | |
| !! | CCACTTGCTATGAGGCTACT+CGG | + | tig0023110:15461-15480 | Msa1405170:intron | 50.0% |
| GTCTGATCCTATGCGTGAAG+GGG | + | tig0023110:15498-15517 | Msa1405170:intron | 50.0% | |
| TCTGATCCTATGCGTGAAGG+GGG | + | tig0023110:15499-15518 | Msa1405170:intron | 50.0% | |
| GCCAGTCCATAGCAATTGTC+TGG | + | tig0023110:16937-16956 | Msa1405170:intron | 50.0% | |
| TGCTTACATACAGGGACGGA+GGG | - | tig0023110:17198-17217 | Msa1405170:intergenic | 50.0% | |
| ! | AGGGTGCTTACATACAGGGA+CGG | - | tig0023110:17202-17221 | Msa1405170:intergenic | 50.0% |
| GTGCTTAGATATAGGGACGG+AGG | + | tig0023110:17239-17258 | Msa1405170:intron | 50.0% | |
| TACATCTTCAAGCACAGGCC+AGG | + | tig0023110:17565-17584 | Msa1405170:CDS | 50.0% | |
| ACATCTTCAAGCACAGGCCA+GGG | + | tig0023110:17566-17585 | Msa1405170:CDS | 50.0% | |
| TGCAACAGGAGGAAGATTGC+AGG | + | tig0023110:17662-17681 | Msa1405170:CDS | 50.0% | |
| TGCTTGGACGAAGTTCAGAG+GGG | + | tig0023110:18473-18492 | Msa1405170:CDS | 50.0% | |
| ! | TAGCTTGCCATGCTTGCATC+AGG | + | tig0023110:18508-18527 | Msa1405170:CDS | 50.0% |
| CCGAGTAGCCTCATAGCAAG+TGG | - | tig0023110:15464-15483 | Msa1405170:intergenic | 55.0% | |
| GACTAACCCCCTTCACGCAT+AGG | - | tig0023110:15508-15527 | Msa1405170:intergenic | 55.0% | |
| !! | TTGCTATGGACTGGCCGAGA+TGG | - | tig0023110:16932-16951 | Msa1405170:intergenic | 55.0% |
| GTGCTTACATACAGGGACGG+AGG | - | tig0023110:17199-17218 | Msa1405170:intergenic | 55.0% | |
| AGCATGGCCAAGTAACCCAG+AGG | - | tig0023110:17607-17626 | Msa1405170:intergenic | 55.0% | |
| ! | CTCGGTCAAGAAGTGCAAGC+TGG | - | tig0023110:17698-17717 | Msa1405170:intergenic | 55.0% |
| AGAAGAGGATGTCGAACCGG+TGG | - | tig0023110:18155-18174 | Msa1405170:intergenic | 55.0% | |
| ! | CTCAGCTGCCTCTGAAGAAG+AGG | - | tig0023110:18170-18189 | Msa1405170:intergenic | 55.0% |
| CTCTTCTTCAGAGGCAGCTG+AGG | + | tig0023110:18168-18187 | Msa1405170:CDS | 55.0% | |
| GCTTGGACGAAGTTCAGAGG+GGG | + | tig0023110:18474-18493 | Msa1405170:CDS | 55.0% | |
| CTTGGACGAAGTTCAGAGGG+GGG | + | tig0023110:18475-18494 | Msa1405170:CDS | 55.0% | |
| ! | CTCAGCGGGTTCGTCCATCT+CGG | + | tig0023110:16915-16934 | Msa1405170:intron | 60.0% |
| CTCATGCTGCAGCAGCCTCT+GGG | + | tig0023110:17589-17608 | Msa1405170:CDS | 60.0% | |
| GCAGCAGCCTCTGGGTTACT+TGG | + | tig0023110:17597-17616 | Msa1405170:CDS | 60.0% | |
| CGAGATGGACGAACCCGCTG+AGG | - | tig0023110:16917-16936 | Msa1405170:intergenic | 65.0% | |
| GCTCATGCTGCAGCAGCCTC+TGG | + | tig0023110:17588-17607 | Msa1405170:CDS | 65.0% | |
| GGCTGCTGCAGCATGAGCCC+TGG | - | tig0023110:17586-17605 | Msa1405170:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023110 | gene | 14806 | 18562 | 14806 | ID=Msa1405170;Name=Msa1405170 |
| tig0023110 | mRNA | 14806 | 18562 | 14806 | ID=Msa1405170-mRNA-1;Parent=Msa1405170;Name=Msa1405170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=91|0.8|0.83|1|0.8|0.83|6|27|195 |
| tig0023110 | exon | 14806 | 14865 | 14806 | ID=Msa1405170-mRNA-1:exon:23957;Parent=Msa1405170-mRNA-1 |
| tig0023110 | exon | 16665 | 16773 | 16665 | ID=Msa1405170-mRNA-1:exon:23958;Parent=Msa1405170-mRNA-1 |
| tig0023110 | exon | 17504 | 17732 | 17504 | ID=Msa1405170-mRNA-1:exon:23959;Parent=Msa1405170-mRNA-1 |
| tig0023110 | exon | 17863 | 17965 | 17863 | ID=Msa1405170-mRNA-1:exon:23960;Parent=Msa1405170-mRNA-1 |
| tig0023110 | exon | 18144 | 18189 | 18144 | ID=Msa1405170-mRNA-1:exon:23961;Parent=Msa1405170-mRNA-1 |
| tig0023110 | exon | 18404 | 18562 | 18404 | ID=Msa1405170-mRNA-1:exon:23962;Parent=Msa1405170-mRNA-1 |
| tig0023110 | five_prime_UTR | 14806 | 14865 | 14806 | ID=Msa1405170-mRNA-1:five_prime_utr;Parent=Msa1405170-mRNA-1 |
| tig0023110 | five_prime_UTR | 16665 | 16695 | 16665 | ID=Msa1405170-mRNA-1:five_prime_utr;Parent=Msa1405170-mRNA-1 |
| tig0023110 | CDS | 16696 | 16773 | 16696 | ID=Msa1405170-mRNA-1:cds;Parent=Msa1405170-mRNA-1 |
| tig0023110 | CDS | 17504 | 17732 | 17504 | ID=Msa1405170-mRNA-1:cds;Parent=Msa1405170-mRNA-1 |
| tig0023110 | CDS | 17863 | 17965 | 17863 | ID=Msa1405170-mRNA-1:cds;Parent=Msa1405170-mRNA-1 |
| tig0023110 | CDS | 18144 | 18189 | 18144 | ID=Msa1405170-mRNA-1:cds;Parent=Msa1405170-mRNA-1 |
| tig0023110 | CDS | 18404 | 18535 | 18404 | ID=Msa1405170-mRNA-1:cds;Parent=Msa1405170-mRNA-1 |
| tig0023110 | three_prime_UTR | 18536 | 18562 | 18536 | ID=Msa1405170-mRNA-1:three_prime_utr;Parent=Msa1405170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
