Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644570 | XP_024637811.2 | 83.764 | 271 | 8 | 1 | 1 | 235 | 1 | 271 | 1.72e-160 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644570 | sp|Q9M2S6|SDIR1_ARATH | 50.909 | 275 | 93 | 4 | 1 | 235 | 1 | 273 | 1.81e-80 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644570 | A0A396I8E3 | 83.764 | 271 | 8 | 1 | 1 | 235 | 1 | 271 | 8.21e-161 | 455 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0644570 | Msa0661650 | 0.813519 | 2.456146e-51 | -8.615850e-47 |
| Msa0644570 | Msa0989360 | 0.805086 | 1.581709e-49 | -8.615850e-47 |
| Msa0644570 | Msa1100050 | 0.816817 | 4.547786e-52 | -8.615850e-47 |
| Msa0644570 | Msa1107620 | 0.802152 | 6.426076e-49 | -8.615850e-47 |
| Msa0644570 | Msa1405170 | 0.843470 | 1.374195e-58 | -8.615850e-47 |
| Msa0403640 | Msa0644570 | 0.807999 | 3.840912e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644570 | MtrunA17_Chr4g0031911 | 83.764 | 271 | 8 | 1 | 1 | 235 | 1 | 271 | 1.58e-164 | 455 |
| Msa0644570 | MtrunA17_Chr4g0031921 | 83.764 | 271 | 8 | 1 | 1 | 235 | 1 | 271 | 4.43e-164 | 454 |
| Msa0644570 | MtrunA17_Chr3g0112041 | 49.818 | 275 | 96 | 3 | 1 | 235 | 1 | 273 | 4.46e-84 | 251 |
| Msa0644570 | MtrunA17_Chr1g0169651 | 35.593 | 118 | 45 | 3 | 97 | 214 | 638 | 724 | 7.57e-15 | 73.2 |
| Msa0644570 | MtrunA17_Chr5g0409201 | 40.244 | 82 | 47 | 2 | 135 | 214 | 54 | 135 | 1.10e-13 | 66.6 |
| Msa0644570 | MtrunA17_Chr6g0461611 | 40.625 | 64 | 36 | 1 | 154 | 217 | 219 | 280 | 3.79e-13 | 67.8 |
| Msa0644570 | MtrunA17_Chr5g0417501 | 32.895 | 76 | 51 | 0 | 142 | 217 | 84 | 159 | 5.25e-13 | 66.2 |
| Msa0644570 | MtrunA17_Chr3g0138451 | 33.929 | 112 | 57 | 4 | 114 | 218 | 261 | 362 | 1.14e-12 | 66.6 |
| Msa0644570 | MtrunA17_Chr5g0409211 | 31.132 | 106 | 64 | 3 | 128 | 224 | 41 | 146 | 1.35e-12 | 63.9 |
| Msa0644570 | MtrunA17_Chr7g0246571 | 33.028 | 109 | 70 | 1 | 109 | 217 | 251 | 356 | 1.60e-12 | 66.2 |
| Msa0644570 | MtrunA17_Chr2g0317671 | 58.140 | 43 | 17 | 1 | 173 | 214 | 159 | 201 | 1.95e-12 | 64.3 |
| Msa0644570 | MtrunA17_Chr7g0276591 | 50.000 | 58 | 26 | 2 | 165 | 219 | 91 | 148 | 2.59e-12 | 65.1 |
| Msa0644570 | MtrunA17_Chr3g0133001 | 43.860 | 57 | 31 | 1 | 162 | 217 | 145 | 201 | 2.97e-12 | 65.5 |
| Msa0644570 | MtrunA17_Chr2g0325141 | 44.262 | 61 | 33 | 1 | 158 | 217 | 76 | 136 | 5.22e-12 | 61.6 |
| Msa0644570 | MtrunA17_Chr1g0200721 | 56.000 | 50 | 21 | 1 | 166 | 214 | 228 | 277 | 6.66e-12 | 64.3 |
| Msa0644570 | MtrunA17_Chr8g0345381 | 46.296 | 54 | 28 | 1 | 166 | 218 | 46 | 99 | 7.00e-12 | 61.6 |
| Msa0644570 | MtrunA17_Chr5g0406031 | 43.590 | 78 | 38 | 3 | 139 | 214 | 158 | 231 | 8.66e-12 | 62.8 |
| Msa0644570 | MtrunA17_Chr7g0255261 | 31.967 | 122 | 56 | 4 | 110 | 217 | 182 | 290 | 1.09e-11 | 63.2 |
| Msa0644570 | MtrunA17_Chr6g0451051 | 43.077 | 65 | 32 | 2 | 156 | 219 | 53 | 113 | 1.20e-11 | 60.8 |
| Msa0644570 | MtrunA17_Chr4g0041541 | 44.262 | 61 | 34 | 0 | 160 | 220 | 172 | 232 | 1.32e-11 | 62.8 |
| Msa0644570 | MtrunA17_Chr8g0388201 | 49.123 | 57 | 27 | 2 | 159 | 214 | 334 | 389 | 1.52e-11 | 63.2 |
| Msa0644570 | MtrunA17_Chr8g0345401 | 33.721 | 86 | 54 | 2 | 143 | 225 | 17 | 102 | 1.90e-11 | 60.1 |
| Msa0644570 | MtrunA17_Chr8g0388231 | 51.667 | 60 | 21 | 3 | 159 | 214 | 324 | 379 | 1.97e-11 | 63.2 |
| Msa0644570 | MtrunA17_Chr8g0369691 | 53.061 | 49 | 22 | 1 | 167 | 214 | 439 | 487 | 2.34e-11 | 62.8 |
| Msa0644570 | MtrunA17_Chr7g0255321 | 32.039 | 103 | 68 | 1 | 118 | 220 | 190 | 290 | 2.49e-11 | 62.0 |
| Msa0644570 | MtrunA17_Chr8g0345361 | 49.153 | 59 | 24 | 2 | 157 | 214 | 106 | 159 | 2.61e-11 | 61.6 |
| Msa0644570 | MtrunA17_Chr7g0274741 | 49.057 | 53 | 26 | 1 | 163 | 214 | 89 | 141 | 2.88e-11 | 60.5 |
| Msa0644570 | MtrunA17_Chr8g0350741 | 45.614 | 57 | 24 | 2 | 173 | 228 | 89 | 139 | 4.24e-11 | 60.1 |
| Msa0644570 | MtrunA17_Chr4g0030831 | 38.983 | 59 | 35 | 1 | 157 | 214 | 96 | 154 | 4.88e-11 | 59.7 |
| Msa0644570 | MtrunA17_Chr5g0446921 | 34.286 | 105 | 53 | 3 | 110 | 214 | 247 | 335 | 5.27e-11 | 61.6 |
| Msa0644570 | MtrunA17_Chr5g0427431 | 40.351 | 57 | 33 | 1 | 162 | 217 | 149 | 205 | 5.85e-11 | 61.6 |
| Msa0644570 | MtrunA17_Chr6g0486651 | 44.231 | 52 | 28 | 1 | 168 | 218 | 114 | 165 | 6.71e-11 | 61.2 |
| Msa0644570 | MtrunA17_Chr5g0405931 | 43.750 | 48 | 26 | 1 | 173 | 219 | 57 | 104 | 7.08e-11 | 58.2 |
| Msa0644570 | MtrunA17_Chr5g0408871 | 48.980 | 49 | 24 | 1 | 167 | 214 | 499 | 547 | 7.62e-11 | 61.6 |
| Msa0644570 | MtrunA17_Chr7g0255331 | 31.068 | 103 | 68 | 1 | 118 | 220 | 195 | 294 | 9.57e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644570 | AT3G55530.1 | 50.909 | 275 | 93 | 4 | 1 | 235 | 1 | 273 | 1.84e-81 | 245 |
| Msa0644570 | AT4G32600.1 | 38.462 | 104 | 60 | 3 | 115 | 218 | 309 | 408 | 9.67e-15 | 73.2 |
| Msa0644570 | AT4G32600.2 | 38.462 | 104 | 60 | 3 | 115 | 218 | 309 | 408 | 9.67e-15 | 73.2 |
| Msa0644570 | AT1G35625.1 | 37.363 | 91 | 54 | 2 | 127 | 214 | 185 | 275 | 1.30e-14 | 72.0 |
| Msa0644570 | AT1G04790.1 | 35.484 | 124 | 49 | 5 | 91 | 214 | 538 | 630 | 2.96e-14 | 72.0 |
| Msa0644570 | AT1G14200.1 | 47.917 | 48 | 25 | 0 | 170 | 217 | 106 | 153 | 4.11e-14 | 68.6 |
| Msa0644570 | AT1G80400.1 | 36.449 | 107 | 57 | 2 | 114 | 218 | 303 | 400 | 1.33e-13 | 69.7 |
| Msa0644570 | AT1G35630.1 | 35.294 | 102 | 63 | 2 | 116 | 214 | 174 | 275 | 1.58e-13 | 68.9 |
| Msa0644570 | AT5G08139.1 | 45.283 | 53 | 29 | 0 | 165 | 217 | 301 | 353 | 7.85e-13 | 67.4 |
| Msa0644570 | AT1G71980.1 | 54.000 | 50 | 22 | 1 | 166 | 214 | 225 | 274 | 1.59e-12 | 66.6 |
| Msa0644570 | AT2G01735.1 | 30.172 | 116 | 61 | 3 | 113 | 220 | 251 | 354 | 1.78e-12 | 66.2 |
| Msa0644570 | AT5G66070.5 | 55.556 | 45 | 19 | 1 | 171 | 214 | 174 | 218 | 2.39e-12 | 64.7 |
| Msa0644570 | AT5G66070.1 | 55.556 | 45 | 19 | 1 | 171 | 214 | 174 | 218 | 2.39e-12 | 64.7 |
| Msa0644570 | AT3G18930.2 | 29.412 | 119 | 62 | 3 | 97 | 214 | 101 | 198 | 2.49e-12 | 65.9 |
| Msa0644570 | AT3G18930.3 | 29.412 | 119 | 62 | 3 | 97 | 214 | 101 | 198 | 2.49e-12 | 65.9 |
| Msa0644570 | AT3G18930.1 | 29.412 | 119 | 62 | 3 | 97 | 214 | 101 | 198 | 2.49e-12 | 65.9 |
| Msa0644570 | AT5G66070.2 | 55.556 | 45 | 19 | 1 | 171 | 214 | 198 | 242 | 3.68e-12 | 64.3 |
| Msa0644570 | AT4G35840.2 | 32.374 | 139 | 78 | 7 | 85 | 214 | 134 | 265 | 6.38e-12 | 63.9 |
| Msa0644570 | AT4G26580.1 | 35.052 | 97 | 38 | 2 | 118 | 214 | 259 | 330 | 8.04e-12 | 64.3 |
| Msa0644570 | AT4G26580.2 | 35.052 | 97 | 38 | 2 | 118 | 214 | 259 | 330 | 8.04e-12 | 64.3 |
| Msa0644570 | AT1G22670.1 | 52.000 | 50 | 23 | 1 | 166 | 214 | 225 | 274 | 1.24e-11 | 63.9 |
| Msa0644570 | AT5G66160.2 | 57.143 | 49 | 20 | 1 | 167 | 214 | 226 | 274 | 2.28e-11 | 62.8 |
| Msa0644570 | AT5G66160.1 | 60.870 | 46 | 17 | 1 | 170 | 214 | 229 | 274 | 2.29e-11 | 62.8 |
| Msa0644570 | AT1G53820.1 | 45.455 | 55 | 29 | 1 | 166 | 219 | 113 | 167 | 2.75e-11 | 62.4 |
| Msa0644570 | AT1G21960.1 | 42.857 | 49 | 28 | 0 | 169 | 217 | 154 | 202 | 4.27e-11 | 60.8 |
| Msa0644570 | AT5G24870.3 | 44.898 | 49 | 27 | 0 | 166 | 214 | 461 | 509 | 4.53e-11 | 62.4 |
| Msa0644570 | AT5G24870.1 | 44.898 | 49 | 27 | 0 | 166 | 214 | 461 | 509 | 4.53e-11 | 62.4 |
| Msa0644570 | AT5G24870.2 | 44.898 | 49 | 27 | 0 | 166 | 214 | 461 | 509 | 4.53e-11 | 62.4 |
| Msa0644570 | AT4G35840.1 | 29.323 | 133 | 58 | 5 | 85 | 214 | 134 | 233 | 4.57e-11 | 61.2 |
| Msa0644570 | AT4G40070.1 | 50.000 | 62 | 28 | 2 | 171 | 231 | 122 | 181 | 4.58e-11 | 62.0 |
| Msa0644570 | AT2G35420.1 | 41.176 | 68 | 39 | 1 | 163 | 229 | 93 | 160 | 5.57e-11 | 61.2 |
| Msa0644570 | AT2G17730.1 | 41.558 | 77 | 42 | 3 | 139 | 214 | 164 | 238 | 5.58e-11 | 61.2 |
| Msa0644570 | AT1G26800.1 | 46.667 | 45 | 24 | 0 | 173 | 217 | 113 | 157 | 5.70e-11 | 60.5 |
| Msa0644570 | AT1G72310.1 | 50.000 | 48 | 23 | 1 | 168 | 214 | 122 | 169 | 5.94e-11 | 61.6 |
| Msa0644570 | AT5G05810.1 | 42.105 | 57 | 32 | 1 | 162 | 217 | 135 | 191 | 6.21e-11 | 62.0 |
| Msa0644570 | AT3G02340.1 | 35.632 | 87 | 55 | 1 | 132 | 217 | 293 | 379 | 6.29e-11 | 62.0 |
| Msa0644570 | AT3G02340.2 | 35.632 | 87 | 55 | 1 | 132 | 217 | 293 | 379 | 6.29e-11 | 62.0 |
| Msa0644570 | AT4G09560.1 | 43.636 | 55 | 30 | 1 | 161 | 214 | 222 | 276 | 6.95e-11 | 62.0 |
| Msa0644570 | AT3G58720.2 | 39.706 | 68 | 34 | 1 | 148 | 215 | 154 | 214 | 7.63e-11 | 60.8 |
| Msa0644570 | AT5G56340.1 | 32.308 | 65 | 44 | 0 | 171 | 235 | 257 | 321 | 8.46e-11 | 61.6 |
| Msa0644570 | AT4G11680.1 | 32.039 | 103 | 58 | 2 | 118 | 217 | 289 | 382 | 8.52e-11 | 61.6 |
Find 73 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCATGCTGCAGCAGCCTC+TGG | 0.223994 | 4_3:-48584648 | Msa0644570:CDS |
| ACTTTGAGGGTTCTAGCTTT+TGG | 0.287808 | 4_3:-48584365 | Msa0644570:CDS |
| ACTATCACAACTTACTCTAT+TGG | 0.301919 | 4_3:+48584278 | None:intergenic |
| GTAACTTTATGTTTGTGAAT+AGG | 0.332856 | 4_3:+48584305 | None:intergenic |
| GGCTGCTGCAGCATGAGCCC+TGG | 0.341598 | 4_3:+48584653 | None:intergenic |
| GCAGCAGCCTCTGGGTTACT+TGG | 0.350465 | 4_3:-48584639 | Msa0644570:CDS |
| ATTCACAAACATAAAGTTAC+TGG | 0.368379 | 4_3:-48584302 | Msa0644570:CDS |
| CAACCCATCTTCTTGATCAT+TGG | 0.369702 | 4_3:+48583799 | None:intergenic |
| CTATCACAACTTACTCTATT+GGG | 0.378302 | 4_3:+48584279 | None:intergenic |
| TAGCTTGCCATGCTTGCATC+AGG | 0.383595 | 4_3:-48583729 | Msa0644570:intron |
| CTCATGCTGCAGCAGCCTCT+GGG | 0.394979 | 4_3:-48584647 | Msa0644570:CDS |
| TCTATTTATTAAAGTAATGA+AGG | 0.426412 | 4_3:-48582987 | Msa0644570:three_prime_UTR |
| TGTGTAGCATTATTCAGATA+TGG | 0.430313 | 4_3:-48583109 | Msa0644570:exon |
| TGCAACAGGAGGAAGATTGC+AGG | 0.437968 | 4_3:-48584574 | Msa0644570:CDS |
| TACATCTTCAAGCACAGGCC+AGG | 0.441686 | 4_3:-48584671 | Msa0644570:CDS |
| TACCTATCTCATTAAAATCT+CGG | 0.454083 | 4_3:+48584523 | None:intergenic |
| TGGCAGATTATGACACTTTG+AGG | 0.456834 | 4_3:-48584379 | Msa0644570:intron |
| CCCATCTTAAATTTGCATAC+AGG | 0.483554 | 4_3:+48583180 | None:intergenic |
| GAATGGAGTGTAGCTGAGAA+TGG | 0.485471 | 4_3:+48587388 | None:intergenic |
| CCATCTATAGCATTTGCAAC+AGG | 0.492962 | 4_3:-48584588 | Msa0644570:CDS |
| TCCTGTATGCAAATTTAAGA+TGG | 0.494081 | 4_3:-48583181 | Msa0644570:CDS |
| AATATTCATATGCCAAGCTA+AGG | 0.496594 | 4_3:+48583021 | None:intergenic |
| CGTACCATTGAGGTTCTCTC+AGG | 0.496769 | 4_3:+48585475 | None:intergenic |
| ATGCCAACTGCATCGATCAA+TGG | 0.497934 | 4_3:-48583224 | Msa0644570:CDS |
| TACATTTATTTATATAACTC+AGG | 0.499990 | 4_3:+48583068 | None:intergenic |
| CTCGGTCAAGAAGTGCAAGC+TGG | 0.503206 | 4_3:+48584541 | None:intergenic |
| CAAGATTTCAAAGGAGAAGA+GGG | 0.508441 | 4_3:-48583827 | Msa0644570:CDS |
| AGTGCCAATGATCAAGAAGA+TGG | 0.508510 | 4_3:-48583803 | Msa0644570:CDS |
| GGCAGATTATGACACTTTGA+GGG | 0.514065 | 4_3:-48584378 | Msa0644570:intron |
| CTCAGCTGCCTCTGAAGAAG+AGG | 0.514485 | 4_3:+48584070 | None:intergenic |
| AGTAGGGGAGATATTGAAAA+CGG | 0.519600 | 4_3:-48585514 | Msa0644570:CDS |
| TGAAGAAGAGGATGTCGAAC+CGG | 0.525338 | 4_3:+48584082 | None:intergenic |
| CCTGTTGCAAATGCTATAGA+TGG | 0.526351 | 4_3:+48584588 | None:intergenic |
| CGTTAAACCTGATGCAAGCA+TGG | 0.528528 | 4_3:+48583722 | None:intergenic |
| TTTATGTTTGTGAATAGGCA+AGG | 0.528785 | 4_3:+48584310 | None:intergenic |
| TTATCTACATCTTCAAGCAC+AGG | 0.535533 | 4_3:-48584676 | Msa0644570:CDS |
| TGGTACTCGTTCAATGTCTG+AGG | 0.538572 | 4_3:-48584345 | Msa0644570:CDS |
| TACTTACACGAAAATAAGAA+TGG | 0.539458 | 4_3:+48587371 | None:intergenic |
| ATTGGACCGTACCCTTAGCT+TGG | 0.544129 | 4_3:-48583033 | Msa0644570:three_prime_UTR |
| CTCTTCTTCAGAGGCAGCTG+AGG | 0.544800 | 4_3:-48584069 | Msa0644570:intron |
| ATTAACAGAGATGGCTCCAC+CGG | 0.546192 | 4_3:-48584101 | Msa0644570:intron |
| ACTGCATCGATCAATGGCTC+CGG | 0.547991 | 4_3:-48583218 | Msa0644570:CDS |
| CAGATTAAACAAGATTTCAA+AGG | 0.550749 | 4_3:-48583836 | Msa0644570:CDS |
| TGCAAATTTAAGATGGGTGC+GGG | 0.553076 | 4_3:-48583174 | Msa0644570:CDS |
| AATACTGTCGGTCTTTGTGA+TGG | 0.555712 | 4_3:-48584724 | Msa0644570:CDS |
| TTCGACATCCTCTTCTTCAG+AGG | 0.558298 | 4_3:-48584078 | Msa0644570:CDS |
| ACAAGATTTCAAAGGAGAAG+AGG | 0.559280 | 4_3:-48583828 | Msa0644570:CDS |
| ATGCAAATTTAAGATGGGTG+CGG | 0.565173 | 4_3:-48583175 | Msa0644570:CDS |
| AAGTAACAATGCGTGCGAGT+CGG | 0.570828 | 4_3:-48583145 | Msa0644570:CDS |
| ATGCTTGGACGAAGTTCAGA+GGG | 0.571136 | 4_3:-48583765 | Msa0644570:CDS |
| GTTGACATGTGCTATATGCT+TGG | 0.578038 | 4_3:-48583780 | Msa0644570:CDS |
| TGTTCCTGAGAGAACCTCAA+TGG | 0.579910 | 4_3:-48585479 | Msa0644570:intron |
| ACATCTTCAAGCACAGGCCA+GGG | 0.583038 | 4_3:-48584670 | Msa0644570:CDS |
| CTATTTATTAAAGTAATGAA+GGG | 0.584172 | 4_3:-48582986 | Msa0644570:three_prime_UTR |
| TCAGCGCTGGATAATACTGT+CGG | 0.585921 | 4_3:-48584736 | Msa0644570:intron |
| CCCTCGAAAAGCAAAACTCA+TGG | 0.591065 | 4_3:+48585537 | None:intergenic |
| AAGAAGTAATCGTACCATTG+AGG | 0.591441 | 4_3:+48585465 | None:intergenic |
| GTGCCAATGATCAAGAAGAT+GGG | 0.602726 | 4_3:-48583802 | Msa0644570:CDS |
| TATGCTTGGACGAAGTTCAG+AGG | 0.611074 | 4_3:-48583766 | Msa0644570:CDS |
| CCTGTATGCAAATTTAAGAT+GGG | 0.613141 | 4_3:-48583180 | Msa0644570:CDS |
| AATTTAAGATGGGTGCGGGA+TGG | 0.614179 | 4_3:-48583170 | Msa0644570:CDS |
| GAGCCATTGATCGATGCAGT+TGG | 0.622535 | 4_3:+48583221 | None:intergenic |
| ATATTCATATGCCAAGCTAA+GGG | 0.631176 | 4_3:+48583022 | None:intergenic |
| TACTCGTTCAATGTCTGAGG+AGG | 0.637939 | 4_3:-48584342 | Msa0644570:CDS |
| CATATGCCAAGCTAAGGGTA+CGG | 0.637950 | 4_3:+48583027 | None:intergenic |
| AGAAGAGGATGTCGAACCGG+TGG | 0.644248 | 4_3:+48584085 | None:intergenic |
| TCTATAGCATTTGCAACAGG+AGG | 0.645431 | 4_3:-48584585 | Msa0644570:CDS |
| CGTGAACTCGTAATTCAGCA+TGG | 0.652635 | 4_3:+48584616 | None:intergenic |
| GCTTGGACGAAGTTCAGAGG+GGG | 0.665381 | 4_3:-48583763 | Msa0644570:CDS |
| TGCTTGGACGAAGTTCAGAG+GGG | 0.707377 | 4_3:-48583764 | Msa0644570:CDS |
| CTTGGACGAAGTTCAGAGGG+GGG | 0.711037 | 4_3:-48583762 | Msa0644570:CDS |
| GTTGCAAATGCTATAGATGG+TGG | 0.721197 | 4_3:+48584591 | None:intergenic |
| AGCATGGCCAAGTAACCCAG+AGG | 0.745020 | 4_3:+48584632 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAATCAATTTC+AGG | + | chr4_3:48583379-48583398 | None:intergenic | 10.0% |
| !! | AAAAATAATATATCATTTGA+GGG | + | chr4_3:48585559-48585578 | None:intergenic | 10.0% |
| !! | AAAAAATAATATATCATTTG+AGG | + | chr4_3:48585560-48585579 | None:intergenic | 10.0% |
| !!! | TCAAATGATATATTATTTTT+TGG | - | chr4_3:48585559-48585578 | Msa0644570:five_prime_UTR | 10.0% |
| !!! | ATTTTCTTCAAAAATGAAAA+TGG | - | chr4_3:48584542-48584561 | Msa0644570:CDS | 15.0% |
| !! | AAAATAATATATCATTTGAG+GGG | + | chr4_3:48585558-48585577 | None:intergenic | 15.0% |
| !! | AAATGTATATATGAACAAAA+AGG | + | chr4_3:48585964-48585983 | None:intergenic | 15.0% |
| !! | TACATTTATTTATATAACTC+AGG | + | chr4_3:48587322-48587341 | None:intergenic | 15.0% |
| !!! | AATGTATATATTTTTGGAAT+TGG | - | chr4_3:48587336-48587355 | Msa0644570:intron | 15.0% |
| !! | TCTATTTATTAAAGTAATGA+AGG | - | chr4_3:48587400-48587419 | Msa0644570:five_prime_UTR | 15.0% |
| !! | CTATTTATTAAAGTAATGAA+GGG | - | chr4_3:48587401-48587420 | Msa0644570:five_prime_UTR | 15.0% |
| !!! | TTATTTTTCTCCCTTAATAT+TGG | - | chr4_3:48583275-48583294 | Msa0644570:intron | 20.0% |
| !! | ATATAATCTTCAAAGATAGA+CGG | - | chr4_3:48583448-48583467 | Msa0644570:intron | 20.0% |
| !!! | CTTTTCTATAAATAGACAAT+TGG | + | chr4_3:48584494-48584513 | None:intergenic | 20.0% |
| !! | GAACTGATTATATCTATTTA+AGG | + | chr4_3:48584727-48584746 | None:intergenic | 20.0% |
| !! | TATAATCAGTTCAATAACTT+TGG | - | chr4_3:48584735-48584754 | Msa0644570:CDS | 20.0% |
| !!! | TACGCTTATCAAAATAATTT+TGG | + | chr4_3:48584765-48584784 | None:intergenic | 20.0% |
| !! | ATCCTTGTGTAATAAATTAA+AGG | - | chr4_3:48584784-48584803 | Msa0644570:intron | 20.0% |
| !! | TTATGTTAACTTATTTACCA+TGG | + | chr4_3:48586257-48586276 | None:intergenic | 20.0% |
| !!! | GGAATTTTATAAATTAATCG+AGG | + | chr4_3:48586956-48586975 | None:intergenic | 20.0% |
| !! | TTAATTCAACAAAAACAGTA+GGG | + | chr4_3:48586977-48586996 | None:intergenic | 20.0% |
| !! | TTTAATTCAACAAAAACAGT+AGG | + | chr4_3:48586978-48586997 | None:intergenic | 20.0% |
| ! | TACTTACACGAAAATAAGAA+TGG | + | chr4_3:48583019-48583038 | None:intergenic | 25.0% |
| ! | TACGAAAACAATGACAATTA+AGG | + | chr4_3:48583064-48583083 | None:intergenic | 25.0% |
| ! | AAGCTAATTTAACTACTCTT+TGG | + | chr4_3:48583141-48583160 | None:intergenic | 25.0% |
| ! | CATATATAAATGCACTATCT+TGG | - | chr4_3:48583176-48583195 | Msa0644570:CDS | 25.0% |
| !!! | TTATGTTGTGGTTTTGATTT+TGG | - | chr4_3:48583243-48583262 | Msa0644570:intron | 25.0% |
| ! | AACACAATCACCAATATTAA+GGG | + | chr4_3:48583288-48583307 | None:intergenic | 25.0% |
| ! | AAACACAATCACCAATATTA+AGG | + | chr4_3:48583289-48583308 | None:intergenic | 25.0% |
| ! | CCTGAAAAGTAAATAGAAAT+AGG | + | chr4_3:48583314-48583333 | None:intergenic | 25.0% |
| !!! | CCTATTTCTATTTACTTTTC+AGG | - | chr4_3:48583311-48583330 | Msa0644570:intron | 25.0% |
| ! | ATATCATTTCTCTAGCTATA+CGG | + | chr4_3:48583999-48584018 | None:intergenic | 25.0% |
| ! | GTTCAAAAGTTGTCATAAAA+TGG | + | chr4_3:48584030-48584049 | None:intergenic | 25.0% |
| ! | ACAACAATAGAAAGAGAAAA+AGG | + | chr4_3:48584097-48584116 | None:intergenic | 25.0% |
| !! | TTCTTTTTCTCTCTTCATAT+TGG | + | chr4_3:48584123-48584142 | None:intergenic | 25.0% |
| ! | AATATGAAGAGAGAAAAAGA+AGG | - | chr4_3:48584122-48584141 | Msa0644570:intron | 25.0% |
| ! | AACTACACTTAATAGCTATA+CGG | + | chr4_3:48584346-48584365 | None:intergenic | 25.0% |
| !! | CACCTTTAATTTATTACACA+AGG | + | chr4_3:48584789-48584808 | None:intergenic | 25.0% |
| !!! | GTTGTGTTGTTATCAATTTT+CGG | - | chr4_3:48584821-48584840 | Msa0644570:intron | 25.0% |
| !! | TATGAAGCAATAAAGCATTA+GGG | + | chr4_3:48585460-48585479 | None:intergenic | 25.0% |
| !! | ATATGAAGCAATAAAGCATT+AGG | + | chr4_3:48585461-48585480 | None:intergenic | 25.0% |
| ! | TCATATATGTAGAATCTCAA+TGG | - | chr4_3:48585475-48585494 | Msa0644570:intron | 25.0% |
| ! | ATTTAATGTGTATATGCTAC+TGG | - | chr4_3:48585598-48585617 | Msa0644570:intron | 25.0% |
| ! | TACCTATCTCATTAAAATCT+CGG | + | chr4_3:48585867-48585886 | None:intergenic | 25.0% |
| !!! | AACAAAAAGGCATTTTCTTT+TGG | + | chr4_3:48585951-48585970 | None:intergenic | 25.0% |
| ! | GTAACTTTATGTTTGTGAAT+AGG | + | chr4_3:48586085-48586104 | None:intergenic | 25.0% |
| ! | ATTCACAAACATAAAGTTAC+TGG | - | chr4_3:48586085-48586104 | Msa0644570:intron | 25.0% |
| ! | AATGAATCATAAGTTGTGAT+AGG | - | chr4_3:48586152-48586171 | Msa0644570:intron | 25.0% |
| ! | TTTGTCTATATTAACAGAGA+TGG | - | chr4_3:48586277-48586296 | Msa0644570:intron | 25.0% |
| ! | GTTTAATCTGATTCAAACAT+TGG | + | chr4_3:48586541-48586560 | None:intergenic | 25.0% |
| ! | CAGATTAAACAAGATTTCAA+AGG | - | chr4_3:48586551-48586570 | Msa0644570:intron | 25.0% |
| ! | AAATGATGAATGCAAAAGAT+AGG | + | chr4_3:48586694-48586713 | None:intergenic | 25.0% |
| ! | AAAGAGTTATTTAGCACTAA+TGG | - | chr4_3:48586730-48586749 | Msa0644570:intron | 25.0% |
| !! | TATTCCAATTTTCAACAAAC+CGG | + | chr4_3:48586840-48586859 | None:intergenic | 25.0% |
| ! | TGGCATTTGACATAAAAAAA+TGG | + | chr4_3:48586920-48586939 | None:intergenic | 25.0% |
| ! | ATCTTATATTGCTAAAGTTG+AGG | + | chr4_3:48587038-48587057 | None:intergenic | 25.0% |
| ! | ATTGTTTTCGTAACTGTACA+AGG | - | chr4_3:48583072-48583091 | Msa0644570:three_prime_UTR | 30.0% |
| ! | TTTACAAGAACCGTTTTGTA+AGG | - | chr4_3:48583533-48583552 | Msa0644570:intron | 30.0% |
| ! | TTACAAGAACCGTTTTGTAA+GGG | - | chr4_3:48583534-48583553 | Msa0644570:intron | 30.0% |
| TTAACTCTACCCTTACAAAA+CGG | + | chr4_3:48583546-48583565 | None:intergenic | 30.0% | |
| GAAGCCAATTAACTATTTGT+AGG | - | chr4_3:48583771-48583790 | Msa0644570:CDS | 30.0% | |
| AACTACACTTCATAGCTATA+CGG | + | chr4_3:48583817-48583836 | None:intergenic | 30.0% | |
| ! | ATGATCTTTTTACGACCATT+TGG | + | chr4_3:48584166-48584185 | None:intergenic | 30.0% |
| GAAGCCAATTATCTATTTGT+AGG | - | chr4_3:48584300-48584319 | Msa0644570:CDS | 30.0% | |
| CCAATTATCTATTTGTAGGT+CGG | - | chr4_3:48584304-48584323 | Msa0644570:CDS | 30.0% | |
| ATGTTAAAGTTTCGCAACTT+CGG | - | chr4_3:48584589-48584608 | Msa0644570:CDS | 30.0% | |
| ! | ATTAAAGGTGTAATACTTGC+AGG | - | chr4_3:48584799-48584818 | Msa0644570:intron | 30.0% |
| !!! | AAACTGTTTTGGAGAACTTA+CGG | - | chr4_3:48585186-48585205 | Msa0644570:intron | 30.0% |
| TTTGTTTCCATAAACTTTCC+AGG | - | chr4_3:48585244-48585263 | Msa0644570:intron | 30.0% | |
| AAGTTATCCTGGAAAGTTTA+TGG | + | chr4_3:48585254-48585273 | None:intergenic | 30.0% | |
| ! | ACTGTTTTCATAAGTTATCC+TGG | + | chr4_3:48585265-48585284 | None:intergenic | 30.0% |
| ACCCTTTGCATCTAATAAAA+GGG | - | chr4_3:48585368-48585387 | Msa0644570:intron | 30.0% | |
| ! | ACCCTTTTATTAGATGCAAA+GGG | + | chr4_3:48585372-48585391 | None:intergenic | 30.0% |
| !! | ATAAAAGGGTGCTTAGATAT+AGG | - | chr4_3:48585382-48585401 | Msa0644570:intron | 30.0% |
| !! | TAAAAGGGTGCTTAGATATA+GGG | - | chr4_3:48585383-48585402 | Msa0644570:intron | 30.0% |
| !!! | TTGCTTTTTGCTTCATTTTG+TGG | - | chr4_3:48585988-48586007 | Msa0644570:intron | 30.0% |
| TTTATGTTTGTGAATAGGCA+AGG | + | chr4_3:48586080-48586099 | None:intergenic | 30.0% | |
| CTATCACAACTTACTCTATT+GGG | + | chr4_3:48586111-48586130 | None:intergenic | 30.0% | |
| ACTATCACAACTTACTCTAT+TGG | + | chr4_3:48586112-48586131 | None:intergenic | 30.0% | |
| GTTATCTAAACCTTTGCTTA+TGG | - | chr4_3:48586352-48586371 | Msa0644570:intron | 30.0% | |
| ACCTTTGCTTATGGTTTATT+TGG | - | chr4_3:48586361-48586380 | Msa0644570:intron | 30.0% | |
| ACCAAATAAACCATAAGCAA+AGG | + | chr4_3:48586365-48586384 | None:intergenic | 30.0% | |
| !!! | GCATCTATTGTTTTTTGCTT+CGG | - | chr4_3:48586438-48586457 | Msa0644570:intron | 30.0% |
| !!! | CTTTTTTATTTCCCTGGAAT+AGG | - | chr4_3:48586493-48586512 | Msa0644570:intron | 30.0% |
| TAAAATCTCTTCCTATTCCA+GGG | + | chr4_3:48586507-48586526 | None:intergenic | 30.0% | |
| TTGAGTTTGTATTCTGAATC+CGG | - | chr4_3:48586818-48586837 | Msa0644570:intron | 30.0% | |
| TCCTGTATGCAAATTTAAGA+TGG | - | chr4_3:48587206-48587225 | Msa0644570:intron | 30.0% | |
| ! | CCTGTATGCAAATTTAAGAT+GGG | - | chr4_3:48587207-48587226 | Msa0644570:intron | 30.0% |
| TGTGTAGCATTATTCAGATA+TGG | - | chr4_3:48587278-48587297 | Msa0644570:intron | 30.0% | |
| ATATTCATATGCCAAGCTAA+GGG | + | chr4_3:48587368-48587387 | None:intergenic | 30.0% | |
| AATATTCATATGCCAAGCTA+AGG | + | chr4_3:48587369-48587388 | None:intergenic | 30.0% | |
| TCACATGAAGAGTTATGTTG+TGG | - | chr4_3:48583231-48583250 | Msa0644570:CDS | 35.0% | |
| !!! | TGTTGTGGTTTTGATTTTGG+TGG | - | chr4_3:48583246-48583265 | Msa0644570:intron | 35.0% |
| ! | TCCAGGCTTTTCATCTAATA+CGG | + | chr4_3:48583482-48583501 | None:intergenic | 35.0% |
| CCAATTGTAAACACAATTCC+AGG | + | chr4_3:48583499-48583518 | None:intergenic | 35.0% | |
| CCTGGAATTGTGTTTACAAT+TGG | - | chr4_3:48583496-48583515 | Msa0644570:intron | 35.0% | |
| GGAATTGTGTTTACAATTGG+TGG | - | chr4_3:48583499-48583518 | Msa0644570:intron | 35.0% | |
| CTGATGTCGTCTTAGAATTT+GGG | + | chr4_3:48583575-48583594 | None:intergenic | 35.0% | |
| TCTGATGTCGTCTTAGAATT+TGG | + | chr4_3:48583576-48583595 | None:intergenic | 35.0% | |
| TTAGTCATCACCTTATAAGC+CGG | - | chr4_3:48583684-48583703 | Msa0644570:intron | 35.0% | |
| CGAATCTATTCTTACAACAC+CGG | + | chr4_3:48583706-48583725 | None:intergenic | 35.0% | |
| CCAATTAACTATTTGTAGGC+CGG | - | chr4_3:48583775-48583794 | Msa0644570:CDS | 35.0% | |
| CGGATCTATTCTTACAAAAC+CGG | + | chr4_3:48583797-48583816 | None:intergenic | 35.0% | |
| ! | CCAATTATCCATTTGTTAGC+CGG | - | chr4_3:48583866-48583885 | Msa0644570:intron | 35.0% |
| CGAATCTATTCTTACAACAC+CGG | + | chr4_3:48583706-48583725 | None:intergenic | 35.0% | |
| GAAGCCAATTATCTATCTGT+AGG | - | chr4_3:48583953-48583972 | Msa0644570:intron | 35.0% | |
| TAGCTATACGGATCTATTCT+TGG | + | chr4_3:48583805-48583824 | None:intergenic | 35.0% | |
| AATGAAGCCAATTACCCATT+TGG | - | chr4_3:48584206-48584225 | Msa0644570:intron | 35.0% | |
| CCGACCTACAAATAGATAAT+TGG | + | chr4_3:48584307-48584326 | None:intergenic | 35.0% | |
| CCAATTATCCATTTGTAAGC+CGG | - | chr4_3:48584395-48584414 | Msa0644570:intron | 35.0% | |
| ! | CGAATCTTTTCTTAAACCAC+CGG | + | chr4_3:48584417-48584436 | None:intergenic | 35.0% |
| AGTAGGGGAGATATTGAAAA+CGG | - | chr4_3:48584873-48584892 | Msa0644570:intron | 35.0% | |
| AAGAAGTAATCGTACCATTG+AGG | + | chr4_3:48584925-48584944 | None:intergenic | 35.0% | |
| GAAAAACCAGACAATTGCTA+TGG | + | chr4_3:48585097-48585116 | None:intergenic | 35.0% | |
| !!! | TGTCTGGTTTTTCTTTTTGC+AGG | - | chr4_3:48585104-48585123 | Msa0644570:intron | 35.0% |
| ! | AAACACTTGCCAAACTGTTT+TGG | - | chr4_3:48585175-48585194 | Msa0644570:intron | 35.0% |
| GTAAGTTCTCCAAAACAGTT+TGG | + | chr4_3:48585187-48585206 | None:intergenic | 35.0% | |
| CACCCTTTGCATCTAATAAA+AGG | - | chr4_3:48585367-48585386 | Msa0644570:intron | 35.0% | |
| ! | CACCCTTTTATTAGATGCAA+AGG | + | chr4_3:48585373-48585392 | None:intergenic | 35.0% |
| CTGAAAAGGATAAAGGTCAA+TGG | + | chr4_3:48585635-48585654 | None:intergenic | 35.0% | |
| TTATCTACATCTTCAAGCAC+AGG | - | chr4_3:48585711-48585730 | Msa0644570:intron | 35.0% | |
| !! | GACCGAGATTTTAATGAGAT+AGG | - | chr4_3:48585862-48585881 | Msa0644570:intron | 35.0% |
| ! | ATGCTTCTGAATTGCACTTT+TGG | - | chr4_3:48585889-48585908 | Msa0644570:intron | 35.0% |
| TTGTGATAGGTTCTTGTAGA+AGG | - | chr4_3:48586165-48586184 | Msa0644570:intron | 35.0% | |
| TAGAAGGTAAAGTGGTTAAC+AGG | - | chr4_3:48586181-48586200 | Msa0644570:intron | 35.0% | |
| ! | TTTAATGAAGTGCTAAGCCA+TGG | - | chr4_3:48586237-48586256 | Msa0644570:intron | 35.0% |
| CGTAACTCAAACAACTTAGT+GGG | + | chr4_3:48586388-48586407 | None:intergenic | 35.0% | |
| TCGTAACTCAAACAACTTAG+TGG | + | chr4_3:48586389-48586408 | None:intergenic | 35.0% | |
| ! | CTAAGTTGTTTGAGTTACGA+AGG | - | chr4_3:48586389-48586408 | Msa0644570:intron | 35.0% |
| CCAGGGAAATAAAAAAGTTG+TGG | + | chr4_3:48586490-48586509 | None:intergenic | 35.0% | |
| !!! | CCACAACTTTTTTATTTCCC+TGG | - | chr4_3:48586487-48586506 | Msa0644570:intron | 35.0% |
| CTAAAATCTCTTCCTATTCC+AGG | + | chr4_3:48586508-48586527 | None:intergenic | 35.0% | |
| ACAAGATTTCAAAGGAGAAG+AGG | - | chr4_3:48586559-48586578 | Msa0644570:intron | 35.0% | |
| CAAGATTTCAAAGGAGAAGA+GGG | - | chr4_3:48586560-48586579 | Msa0644570:intron | 35.0% | |
| ! | GCTCTCAGATATTTTTCCAA+TGG | + | chr4_3:48586791-48586810 | None:intergenic | 35.0% |
| !! | GAATCCGGTTTGTTGAAAAT+TGG | - | chr4_3:48586833-48586852 | Msa0644570:intron | 35.0% |
| CCCATCTTAAATTTGCATAC+AGG | + | chr4_3:48587210-48587229 | None:intergenic | 35.0% | |
| ! | ATGCAAATTTAAGATGGGTG+CGG | - | chr4_3:48587212-48587231 | Msa0644570:intron | 35.0% |
| ! | CCAGGCTTTTCATCTAATAC+GGG | + | chr4_3:48583481-48583500 | None:intergenic | 40.0% |
| !! | TGGCATAATGGACCATTGAT+AGG | + | chr4_3:48583600-48583619 | None:intergenic | 40.0% |
| !! | TCTTACAACACCGGCTTATA+AGG | + | chr4_3:48583697-48583716 | None:intergenic | 40.0% |
| CCGGCCTACAAATAGTTAAT+TGG | + | chr4_3:48583778-48583797 | None:intergenic | 40.0% | |
| CCGGCTAACAAATGGATAAT+TGG | + | chr4_3:48583869-48583888 | None:intergenic | 40.0% | |
| ! | TTACAACACCGGCTAACAAA+TGG | + | chr4_3:48583877-48583896 | None:intergenic | 40.0% |
| CCAATTATCTATCTGTAGGC+CGG | - | chr4_3:48583957-48583976 | Msa0644570:intron | 40.0% | |
| CGGATCTATTCTTGGAAAAC+CGG | + | chr4_3:48583979-48583998 | None:intergenic | 40.0% | |
| TCACAAGAGTTGTCACCAAA+TGG | - | chr4_3:48584148-48584167 | Msa0644570:intron | 40.0% | |
| CCAATTACCCATTTGGAAGA+CGG | - | chr4_3:48584213-48584232 | Msa0644570:intron | 40.0% | |
| TACAACACCGTCTTCCAAAT+GGG | + | chr4_3:48584223-48584242 | None:intergenic | 40.0% | |
| TTACAACACCGTCTTCCAAA+TGG | + | chr4_3:48584224-48584243 | None:intergenic | 40.0% | |
| CCGGCTTACAAATGGATAAT+TGG | + | chr4_3:48584398-48584417 | None:intergenic | 40.0% | |
| ATTATCCATTTGTAAGCCGG+TGG | - | chr4_3:48584398-48584417 | Msa0644570:intron | 40.0% | |
| !! | TTAAACCACCGGCTTACAAA+TGG | + | chr4_3:48584406-48584425 | None:intergenic | 40.0% |
| TAGTCAAGACCATGTGCTAA+AGG | - | chr4_3:48584515-48584534 | Msa0644570:intron | 40.0% | |
| AAAATCCGACCTTTAGCACA+TGG | + | chr4_3:48584527-48584546 | None:intergenic | 40.0% | |
| TTGCGTGTCTGAAAATCTGT+AGG | - | chr4_3:48584638-48584657 | Msa0644570:CDS | 40.0% | |
| TGCGTGTCTGAAAATCTGTA+GGG | - | chr4_3:48584639-48584658 | Msa0644570:CDS | 40.0% | |
| !! | CCATGAGTTTTGCTTTTCGA+GGG | - | chr4_3:48584850-48584869 | Msa0644570:intron | 40.0% |
| !! | TTTTGCTTTTCGAGGGAGTA+GGG | - | chr4_3:48584857-48584876 | Msa0644570:intron | 40.0% |
| !!! | CTGCTCTTTTTTACCTCAGA+GGG | - | chr4_3:48585052-48585071 | Msa0644570:intron | 40.0% |
| ! | TTTTCTTTTTGCAGGTGAGC+AGG | - | chr4_3:48585112-48585131 | Msa0644570:intron | 40.0% |
| ! | TTTCTTTTTGCAGGTGAGCA+GGG | - | chr4_3:48585113-48585132 | Msa0644570:intron | 40.0% |
| ! | AGTATTATCCAGCGCTGAAA+AGG | + | chr4_3:48585649-48585668 | None:intergenic | 40.0% |
| AATACTGTCGGTCTTTGTGA+TGG | - | chr4_3:48585663-48585682 | Msa0644570:intron | 40.0% | |
| GTTGCAAATGCTATAGATGG+TGG | + | chr4_3:48585799-48585818 | None:intergenic | 40.0% | |
| CCTGTTGCAAATGCTATAGA+TGG | + | chr4_3:48585802-48585821 | None:intergenic | 40.0% | |
| CCATCTATAGCATTTGCAAC+AGG | - | chr4_3:48585799-48585818 | Msa0644570:intron | 40.0% | |
| TCTATAGCATTTGCAACAGG+AGG | - | chr4_3:48585802-48585821 | Msa0644570:intron | 40.0% | |
| TGGCAGATTATGACACTTTG+AGG | - | chr4_3:48586008-48586027 | Msa0644570:intron | 40.0% | |
| GGCAGATTATGACACTTTGA+GGG | - | chr4_3:48586009-48586028 | Msa0644570:intron | 40.0% | |
| !!! | ACTTTGAGGGTTCTAGCTTT+TGG | - | chr4_3:48586022-48586041 | Msa0644570:intron | 40.0% |
| GGTTCTTGTAGAAGGTAAAG+TGG | - | chr4_3:48586173-48586192 | Msa0644570:intron | 40.0% | |
| AAAAACGCAGACACGCAAAA+TGG | + | chr4_3:48586218-48586237 | None:intergenic | 40.0% | |
| AGTGCCAATGATCAAGAAGA+TGG | - | chr4_3:48586584-48586603 | Msa0644570:intron | 40.0% | |
| GTGCCAATGATCAAGAAGAT+GGG | - | chr4_3:48586585-48586604 | Msa0644570:intron | 40.0% | |
| CAACCCATCTTCTTGATCAT+TGG | + | chr4_3:48586591-48586610 | None:intergenic | 40.0% | |
| GTTGACATGTGCTATATGCT+TGG | - | chr4_3:48586607-48586626 | Msa0644570:intron | 40.0% | |
| AGTCAGCAAATTAGAGCCAT+TGG | - | chr4_3:48586772-48586791 | Msa0644570:intron | 40.0% | |
| TACTCAAAGCTGCAAGTTGT+TGG | - | chr4_3:48587058-48587077 | Msa0644570:intron | 40.0% | |
| ! | TGCAAATTTAAGATGGGTGC+GGG | - | chr4_3:48587213-48587232 | Msa0644570:intron | 40.0% |
| GAATGGAGTGTAGCTGAGAA+TGG | + | chr4_3:48583002-48583021 | None:intergenic | 45.0% | |
| CCCGTATTAGATGAAAAGCC+TGG | - | chr4_3:48583478-48583497 | Msa0644570:intron | 45.0% | |
| ACGACATCAGAGCCTATCAA+TGG | - | chr4_3:48583585-48583604 | Msa0644570:intron | 45.0% | |
| !! | AGCAAGTGGCATTGGCATAA+TGG | + | chr4_3:48583612-48583631 | None:intergenic | 45.0% |
| ATGTCTGATCCTATGCGTGA+AGG | - | chr4_3:48583658-48583677 | Msa0644570:intron | 45.0% | |
| TGTCTGATCCTATGCGTGAA+GGG | - | chr4_3:48583659-48583678 | Msa0644570:intron | 45.0% | |
| CCGGCCTACAGATAGATAAT+TGG | + | chr4_3:48583960-48583979 | None:intergenic | 45.0% | |
| CCGTCTTCCAAATGGGTAAT+TGG | + | chr4_3:48584216-48584235 | None:intergenic | 45.0% | |
| CAAGACCATGTGCTAAAGGT+CGG | - | chr4_3:48584519-48584538 | Msa0644570:intron | 45.0% | |
| !! | GCCATGAGTTTTGCTTTTCG+AGG | - | chr4_3:48584849-48584868 | Msa0644570:intron | 45.0% |
| CCCTCGAAAAGCAAAACTCA+TGG | + | chr4_3:48584853-48584872 | None:intergenic | 45.0% | |
| !! | GTTTTGCTTTTCGAGGGAGT+AGG | - | chr4_3:48584856-48584875 | Msa0644570:intron | 45.0% |
| !! | TTTGCTTTTCGAGGGAGTAG+GGG | - | chr4_3:48584858-48584877 | Msa0644570:intron | 45.0% |
| TGTTCCTGAGAGAACCTCAA+TGG | - | chr4_3:48584908-48584927 | Msa0644570:intron | 45.0% | |
| !!! | GCTGCTCTTTTTTACCTCAG+AGG | - | chr4_3:48585051-48585070 | Msa0644570:intron | 45.0% |
| ACCAGACAATTGCTATGGAC+TGG | + | chr4_3:48585092-48585111 | None:intergenic | 45.0% | |
| !! | GCAAAGGGTGCTTACATACA+GGG | + | chr4_3:48585357-48585376 | None:intergenic | 45.0% |
| !! | TGCAAAGGGTGCTTACATAC+AGG | + | chr4_3:48585358-48585377 | None:intergenic | 45.0% |
| ! | AGGGTGCTTAGATATAGGGA+CGG | - | chr4_3:48585387-48585406 | Msa0644570:intron | 45.0% |
| TGCTTAGATATAGGGACGGA+GGG | - | chr4_3:48585391-48585410 | Msa0644570:intron | 45.0% | |
| ! | ACCTTTATCCTTTTCAGCGC+TGG | - | chr4_3:48585638-48585657 | Msa0644570:intron | 45.0% |
| ! | TCCAGCGCTGAAAAGGATAA+AGG | + | chr4_3:48585642-48585661 | None:intergenic | 45.0% |
| ! | TCAGCGCTGGATAATACTGT+CGG | - | chr4_3:48585651-48585670 | Msa0644570:intron | 45.0% |
| CGTGAACTCGTAATTCAGCA+TGG | + | chr4_3:48585774-48585793 | None:intergenic | 45.0% | |
| TGGTACTCGTTCAATGTCTG+AGG | - | chr4_3:48586042-48586061 | Msa0644570:intron | 45.0% | |
| TACTCGTTCAATGTCTGAGG+AGG | - | chr4_3:48586045-48586064 | Msa0644570:intron | 45.0% | |
| ATTAACAGAGATGGCTCCAC+CGG | - | chr4_3:48586286-48586305 | Msa0644570:intron | 45.0% | |
| TGAAGAAGAGGATGTCGAAC+CGG | + | chr4_3:48586308-48586327 | None:intergenic | 45.0% | |
| TTCGACATCCTCTTCTTCAG+AGG | - | chr4_3:48586309-48586328 | Msa0644570:intron | 45.0% | |
| TATGCTTGGACGAAGTTCAG+AGG | - | chr4_3:48586621-48586640 | Msa0644570:intron | 45.0% | |
| ATGCTTGGACGAAGTTCAGA+GGG | - | chr4_3:48586622-48586641 | Msa0644570:intron | 45.0% | |
| CGTTAAACCTGATGCAAGCA+TGG | + | chr4_3:48586668-48586687 | None:intergenic | 45.0% | |
| ATCGAGGTGAGTTACTTGAC+TGG | + | chr4_3:48586940-48586959 | None:intergenic | 45.0% | |
| ! | ATGCCAACTGCATCGATCAA+TGG | - | chr4_3:48587163-48587182 | Msa0644570:intron | 45.0% |
| ! | AATTTAAGATGGGTGCGGGA+TGG | - | chr4_3:48587217-48587236 | Msa0644570:intron | 45.0% |
| AAGTAACAATGCGTGCGAGT+CGG | - | chr4_3:48587242-48587261 | Msa0644570:intron | 45.0% | |
| CATATGCCAAGCTAAGGGTA+CGG | + | chr4_3:48587363-48587382 | None:intergenic | 45.0% | |
| !! | ATTTATATATGAATATTTAA+TGG | + | chr4_3:48583167-48583186 | None:intergenic | 5.0% |
| !!! | TAAATAAATGTATATATTTT+TGG | - | chr4_3:48587330-48587349 | Msa0644570:intron | 5.0% |
| !! | TGCCAATGCCACTTGCTATG+AGG | - | chr4_3:48583615-48583634 | Msa0644570:intron | 50.0% |
| ! | CATCTAGAGCATGATCCGAG+TGG | + | chr4_3:48583641-48583660 | None:intergenic | 50.0% |
| GTCTGATCCTATGCGTGAAG+GGG | - | chr4_3:48583660-48583679 | Msa0644570:intron | 50.0% | |
| TCTGATCCTATGCGTGAAGG+GGG | - | chr4_3:48583661-48583680 | Msa0644570:intron | 50.0% | |
| CGTACCATTGAGGTTCTCTC+AGG | + | chr4_3:48584915-48584934 | None:intergenic | 50.0% | |
| GCCAGTCCATAGCAATTGTC+TGG | - | chr4_3:48585088-48585107 | Msa0644570:intron | 50.0% | |
| TGCTTACATACAGGGACGGA+GGG | + | chr4_3:48585349-48585368 | None:intergenic | 50.0% | |
| ! | AGGGTGCTTACATACAGGGA+CGG | + | chr4_3:48585353-48585372 | None:intergenic | 50.0% |
| GTGCTTAGATATAGGGACGG+AGG | - | chr4_3:48585390-48585409 | Msa0644570:intron | 50.0% | |
| TACATCTTCAAGCACAGGCC+AGG | - | chr4_3:48585716-48585735 | Msa0644570:intron | 50.0% | |
| ACATCTTCAAGCACAGGCCA+GGG | - | chr4_3:48585717-48585736 | Msa0644570:intron | 50.0% | |
| TGCAACAGGAGGAAGATTGC+AGG | - | chr4_3:48585813-48585832 | Msa0644570:intron | 50.0% | |
| TGCTTGGACGAAGTTCAGAG+GGG | - | chr4_3:48586623-48586642 | Msa0644570:intron | 50.0% | |
| ! | TAGCTTGCCATGCTTGCATC+AGG | - | chr4_3:48586658-48586677 | Msa0644570:intron | 50.0% |
| TCCAACGACTTCATTCACCG+AGG | - | chr4_3:48586879-48586898 | Msa0644570:intron | 50.0% | |
| TCCTCGGTGAATGAAGTCGT+TGG | + | chr4_3:48586883-48586902 | None:intergenic | 50.0% | |
| GGTGTAGATACTGCACTCCT+CGG | + | chr4_3:48586899-48586918 | None:intergenic | 50.0% | |
| CGATGCAGTTGGCATGAAAC+TGG | + | chr4_3:48587158-48587177 | None:intergenic | 50.0% | |
| GAGCCATTGATCGATGCAGT+TGG | + | chr4_3:48587169-48587188 | None:intergenic | 50.0% | |
| ! | ACTGCATCGATCAATGGCTC+CGG | - | chr4_3:48587169-48587188 | Msa0644570:intron | 50.0% |
| ! | CAGGACATGTTCGTTTTCGC+CGG | + | chr4_3:48587191-48587210 | None:intergenic | 50.0% |
| ATTGGACCGTACCCTTAGCT+TGG | - | chr4_3:48587354-48587373 | Msa0644570:intron | 50.0% | |
| GGCCTCATAGCAAGTGGCAT+TGG | + | chr4_3:48583620-48583639 | None:intergenic | 55.0% | |
| !! | CCACTTGCTATGAGGCCACT+CGG | - | chr4_3:48583623-48583642 | Msa0644570:intron | 55.0% |
| GACTAACCCCCTTCACGCAT+AGG | + | chr4_3:48583670-48583689 | None:intergenic | 55.0% | |
| CTCAGAGGGTTCGTCCATCT+CGG | - | chr4_3:48585066-48585085 | Msa0644570:intron | 55.0% | |
| !! | TTGCTATGGACTGGCCGAGA+TGG | + | chr4_3:48585083-48585102 | None:intergenic | 55.0% |
| GTGCTTACATACAGGGACGG+AGG | + | chr4_3:48585350-48585369 | None:intergenic | 55.0% | |
| AGCATGGCCAAGTAACCCAG+AGG | + | chr4_3:48585758-48585777 | None:intergenic | 55.0% | |
| ! | CTCGGTCAAGAAGTGCAAGC+TGG | + | chr4_3:48585849-48585868 | None:intergenic | 55.0% |
| AGAAGAGGATGTCGAACCGG+TGG | + | chr4_3:48586305-48586324 | None:intergenic | 55.0% | |
| ! | CTCAGCTGCCTCTGAAGAAG+AGG | + | chr4_3:48586320-48586339 | None:intergenic | 55.0% |
| CTCTTCTTCAGAGGCAGCTG+AGG | - | chr4_3:48586318-48586337 | Msa0644570:intron | 55.0% | |
| GCTTGGACGAAGTTCAGAGG+GGG | - | chr4_3:48586624-48586643 | Msa0644570:intron | 55.0% | |
| CTTGGACGAAGTTCAGAGGG+GGG | - | chr4_3:48586625-48586644 | Msa0644570:intron | 55.0% | |
| CCGAGTGGCCTCATAGCAAG+TGG | + | chr4_3:48583626-48583645 | None:intergenic | 60.0% | |
| CGAGATGGACGAACCCTCTG+AGG | + | chr4_3:48585068-48585087 | None:intergenic | 60.0% | |
| GCAGGTGAGCAGGGTCTACA+TGG | - | chr4_3:48585122-48585141 | Msa0644570:intron | 60.0% | |
| CTCATGCTGCAGCAGCCTCT+GGG | - | chr4_3:48585740-48585759 | Msa0644570:intron | 60.0% | |
| GCAGCAGCCTCTGGGTTACT+TGG | - | chr4_3:48585748-48585767 | Msa0644570:intron | 60.0% | |
| GCTCATGCTGCAGCAGCCTC+TGG | - | chr4_3:48585739-48585758 | Msa0644570:intron | 65.0% | |
| GGCTGCTGCAGCATGAGCCC+TGG | + | chr4_3:48585737-48585756 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 48582972 | 48587437 | 48582972 | ID=Msa0644570;Name=Msa0644570 |
| chr4_3 | mRNA | 48582972 | 48587437 | 48582972 | ID=Msa0644570-mRNA-1;Parent=Msa0644570;Name=Msa0644570-mRNA-1;_AED=0.30;_eAED=0.30;_QI=91|0.83|0.85|1|0.83|0.71|7|153|235 |
| chr4_3 | exon | 48582972 | 48583250 | 48582972 | ID=Msa0644570-mRNA-1:exon:11590;Parent=Msa0644570-mRNA-1 |
| chr4_3 | exon | 48583730 | 48583855 | 48583730 | ID=Msa0644570-mRNA-1:exon:11589;Parent=Msa0644570-mRNA-1 |
| chr4_3 | exon | 48584070 | 48584115 | 48584070 | ID=Msa0644570-mRNA-1:exon:11588;Parent=Msa0644570-mRNA-1 |
| chr4_3 | exon | 48584293 | 48584395 | 48584293 | ID=Msa0644570-mRNA-1:exon:11587;Parent=Msa0644570-mRNA-1 |
| chr4_3 | exon | 48584526 | 48584754 | 48584526 | ID=Msa0644570-mRNA-1:exon:11586;Parent=Msa0644570-mRNA-1 |
| chr4_3 | exon | 48585480 | 48585588 | 48585480 | ID=Msa0644570-mRNA-1:exon:11585;Parent=Msa0644570-mRNA-1 |
| chr4_3 | exon | 48587378 | 48587437 | 48587378 | ID=Msa0644570-mRNA-1:exon:11584;Parent=Msa0644570-mRNA-1 |
| chr4_3 | five_prime_UTR | 48587378 | 48587437 | 48587378 | ID=Msa0644570-mRNA-1:five_prime_utr;Parent=Msa0644570-mRNA-1 |
| chr4_3 | five_prime_UTR | 48585558 | 48585588 | 48585558 | ID=Msa0644570-mRNA-1:five_prime_utr;Parent=Msa0644570-mRNA-1 |
| chr4_3 | CDS | 48585480 | 48585557 | 48585480 | ID=Msa0644570-mRNA-1:cds;Parent=Msa0644570-mRNA-1 |
| chr4_3 | CDS | 48584526 | 48584754 | 48584526 | ID=Msa0644570-mRNA-1:cds;Parent=Msa0644570-mRNA-1 |
| chr4_3 | CDS | 48584293 | 48584395 | 48584293 | ID=Msa0644570-mRNA-1:cds;Parent=Msa0644570-mRNA-1 |
| chr4_3 | CDS | 48584070 | 48584115 | 48584070 | ID=Msa0644570-mRNA-1:cds;Parent=Msa0644570-mRNA-1 |
| chr4_3 | CDS | 48583730 | 48583855 | 48583730 | ID=Msa0644570-mRNA-1:cds;Parent=Msa0644570-mRNA-1 |
| chr4_3 | CDS | 48583125 | 48583250 | 48583125 | ID=Msa0644570-mRNA-1:cds;Parent=Msa0644570-mRNA-1 |
| chr4_3 | three_prime_UTR | 48582972 | 48583124 | 48582972 | ID=Msa0644570-mRNA-1:three_prime_utr;Parent=Msa0644570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
