Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410020 | sp|Q6AY46|TRM61_RAT | 43.189 | 301 | 141 | 7 | 10 | 299 | 4 | 285 | 1.61e-73 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410020 | A0A072UAU6 | 95.793 | 309 | 6 | 2 | 1 | 302 | 1 | 309 | 0.0 | 604 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142110 | Msa1410020 | 0.813085 | 3.059296e-51 | -8.615850e-47 |
| Msa0289180 | Msa1410020 | 0.962705 | 3.389921e-121 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410020 | MtrunA17_Chr6g0468581 | 95.793 | 309 | 6 | 2 | 1 | 302 | 1 | 309 | 0.0 | 604 |
| Msa1410020 | MtrunA17_Chr2g0282851 | 74.892 | 231 | 52 | 1 | 1 | 225 | 52 | 282 | 5.64e-130 | 371 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1410020 | AT5G14600.1 | 72.063 | 315 | 75 | 3 | 1 | 302 | 1 | 315 | 1.40e-168 | 470 |
Find 80 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTTTGTTGTTATGTATT+TGG | 0.132518 | tig0023613:-26053 | Msa1410020:CDS |
| ACATTCATGTGGAAGGTTTC+TGG | 0.180697 | tig0023613:-23878 | Msa1410020:three_prime_UTR |
| TCCTAATTCTTCTTCTGTTA+TGG | 0.259735 | tig0023613:-24049 | Msa1410020:CDS |
| AACAATTAGTAACGGTGATT+TGG | 0.271982 | tig0023613:-26302 | Msa1410020:CDS |
| TCCTGAAGAATTTGCTGGCT+TGG | 0.291582 | tig0023613:-24502 | Msa1410020:CDS |
| CGAAGTTCGAGAAGGGAAAA+TGG | 0.297664 | tig0023613:-24163 | Msa1410020:CDS |
| CCAAACATGAATTTCCTATA+TGG | 0.311905 | tig0023613:+23843 | None:intergenic |
| TTGTTTATGTGAAAGATATA+AGG | 0.312566 | tig0023613:-24212 | Msa1410020:intron |
| GGTTGTGTCGTTCTTGAATC+TGG | 0.320717 | tig0023613:-26019 | Msa1410020:CDS |
| AAAACTAAAGTCCACAATTC+AGG | 0.328439 | tig0023613:+26112 | None:intergenic |
| GATTGGATAGGAAAGTCATT+TGG | 0.331486 | tig0023613:-26187 | Msa1410020:CDS |
| GTCTAAAGTATTCAGCAATA+AGG | 0.337791 | tig0023613:-26164 | Msa1410020:CDS |
| GCCAAGCCAGCAAATTCTTC+AGG | 0.357310 | tig0023613:+24501 | None:intergenic |
| GCCATAACAGAAGAAGAATT+AGG | 0.368158 | tig0023613:+24048 | None:intergenic |
| GGGTTTCCTGAAGAATTTGC+TGG | 0.381718 | tig0023613:-24507 | Msa1410020:CDS |
| ATGTATTTGGAGATTGTTCC+TGG | 0.385811 | tig0023613:-26040 | Msa1410020:CDS |
| AGGGATGACTTTGAGAAGAT+TGG | 0.392112 | tig0023613:-24576 | Msa1410020:CDS |
| AACGGTGATGACGGCTCTAA+TGG | 0.392261 | tig0023613:-24126 | Msa1410020:CDS |
| CTTGAATCTGGTACTGGAAG+TGG | 0.400748 | tig0023613:-26007 | Msa1410020:CDS |
| GGTAATTGTAATCTCCATAT+AGG | 0.412202 | tig0023613:-23857 | Msa1410020:three_prime_UTR |
| GATCCCTCAGATACCGTTAC+TGG | 0.416695 | tig0023613:+26247 | None:intergenic |
| CCATATAGGAAATTCATGTT+TGG | 0.417762 | tig0023613:-23843 | Msa1410020:three_prime_UTR |
| ATTGGATAGGAAAGTCATTT+GGG | 0.422230 | tig0023613:-26186 | Msa1410020:CDS |
| TTTATAATTAAAATATTTGA+GGG | 0.453920 | tig0023613:-23798 | Msa1410020:three_prime_UTR |
| ATGGAAAGCTTAGAGATTAA+CGG | 0.454257 | tig0023613:-24144 | Msa1410020:CDS |
| TCTAAAGTATTCAGCAATAA+GGG | 0.459899 | tig0023613:-26163 | Msa1410020:CDS |
| GTCGTTCTTGAATCTGGTAC+TGG | 0.478619 | tig0023613:-26013 | Msa1410020:CDS |
| TTGCAAGAGGAGGAAACGTT+CGG | 0.489818 | tig0023613:-24094 | Msa1410020:CDS |
| CTTTAACTACTTCACTTGCA+AGG | 0.505822 | tig0023613:-25982 | Msa1410020:CDS |
| ACGGGAAGTACCAGTGAAGT+TGG | 0.515604 | tig0023613:+24341 | None:intergenic |
| GCAAGGGCAGTTGCTCCTAC+AGG | 0.518867 | tig0023613:-25965 | Msa1410020:CDS |
| ACAATGCAATCCAACTTCAC+TGG | 0.520816 | tig0023613:-24351 | Msa1410020:intron |
| TACTTGTTTATTGAAAATGT+TGG | 0.523271 | tig0023613:-26359 | Msa1410020:exon |
| GAACGTTTCCTCCTCTTGCA+AGG | 0.535798 | tig0023613:+24096 | None:intergenic |
| TTGAATCTGGTACTGGAAGT+GGG | 0.536848 | tig0023613:-26006 | Msa1410020:CDS |
| CGTTGTACTTGTTCAATACA+CGG | 0.539892 | tig0023613:+24384 | None:intergenic |
| ATTTGGCAATTGTTTATGCA+AGG | 0.545176 | tig0023613:-26285 | Msa1410020:CDS |
| ATAAGCAGCTTAGTCACTGC+GGG | 0.545723 | tig0023613:-24552 | Msa1410020:CDS |
| ATTCACAACATTCATGTGGA+AGG | 0.547599 | tig0023613:-23885 | Msa1410020:three_prime_UTR |
| GCGGGAGTGAGGGACATTCA+AGG | 0.551907 | tig0023613:-24534 | Msa1410020:CDS |
| GCTTAGTCACTGCGGGAGTG+AGG | 0.551945 | tig0023613:-24545 | Msa1410020:CDS |
| TTCAAACATTCAGATTGGAT+AGG | 0.552647 | tig0023613:-26199 | Msa1410020:CDS |
| GAAGCCAGTAACGGTATCTG+AGG | 0.567229 | tig0023613:-26251 | Msa1410020:CDS |
| CTTAGTCACTGCGGGAGTGA+GGG | 0.567587 | tig0023613:-24544 | Msa1410020:CDS |
| AAATATTTGAGGGATAACCT+TGG | 0.569455 | tig0023613:-23788 | Msa1410020:three_prime_UTR |
| GGAATAGCTAGCCAAGGTTG+AGG | 0.572196 | tig0023613:+24456 | None:intergenic |
| TAGCACCTACTCCTGAATTG+TGG | 0.573848 | tig0023613:-26123 | Msa1410020:CDS |
| CAACTTTACCGGTTGCGCCA+AGG | 0.574577 | tig0023613:+23771 | None:intergenic |
| ATGGTTCTCTTCCTTGCAAG+AGG | 0.575002 | tig0023613:-24107 | Msa1410020:CDS |
| TTTAACTACTTCACTTGCAA+GGG | 0.578833 | tig0023613:-25981 | Msa1410020:CDS |
| GTTCTCTTCCTTGCAAGAGG+AGG | 0.580523 | tig0023613:-24104 | Msa1410020:CDS |
| GTGAGGGACATTCAAGGTGA+GGG | 0.582946 | tig0023613:-24528 | Msa1410020:CDS |
| GTTGTACTTGTTCAATACAC+GGG | 0.584848 | tig0023613:+24385 | None:intergenic |
| GATTCAAGAACGACACAACC+AGG | 0.585429 | tig0023613:+26022 | None:intergenic |
| AGTAACGGTATCTGAGGGAT+CGG | 0.588437 | tig0023613:-26245 | Msa1410020:CDS |
| TTAGAGATTAACGGTGATGA+CGG | 0.592052 | tig0023613:-24135 | Msa1410020:CDS |
| CTTAATTCACAACATTCATG+TGG | 0.594752 | tig0023613:-23889 | Msa1410020:three_prime_UTR |
| AAAGTCCACAATTCAGGAGT+AGG | 0.594923 | tig0023613:+26118 | None:intergenic |
| TTTAATAGAACAATTAGTAA+CGG | 0.596180 | tig0023613:-26310 | Msa1410020:CDS |
| AACGTATAAACATGTCCTGT+AGG | 0.611682 | tig0023613:+25950 | None:intergenic |
| CGGACATACGAAGTTCGAGA+AGG | 0.611846 | tig0023613:-24171 | Msa1410020:CDS |
| CTCGAACTTCGTATGTCCGT+AGG | 0.612530 | tig0023613:+24175 | None:intergenic |
| TGACCTCTAGCTTCACCACA+TGG | 0.618356 | tig0023613:+24021 | None:intergenic |
| GGACATACGAAGTTCGAGAA+GGG | 0.625372 | tig0023613:-24170 | Msa1410020:CDS |
| TGAGGGACATTCAAGGTGAG+GGG | 0.627956 | tig0023613:-24527 | Msa1410020:CDS |
| ACGTTCGGATGGAGCTAGTG+TGG | 0.628192 | tig0023613:-24079 | Msa1410020:CDS |
| TCTGTTATGGCTAGACCATG+TGG | 0.628693 | tig0023613:-24036 | Msa1410020:CDS |
| AACAGAAGAAGAATTAGGAT+AGG | 0.630818 | tig0023613:+24053 | None:intergenic |
| AACAAAGATCTGGATCAGCT+AGG | 0.636973 | tig0023613:-25916 | Msa1410020:intron |
| AGACCATGTGGTGAAGCTAG+AGG | 0.638065 | tig0023613:-24024 | Msa1410020:CDS |
| AGTGAGGGACATTCAAGGTG+AGG | 0.642071 | tig0023613:-24529 | Msa1410020:CDS |
| GCTGAAGGAATAGCTAGCCA+AGG | 0.647664 | tig0023613:+24450 | None:intergenic |
| CATATAGAATCTGTGTCCTG+TGG | 0.649958 | tig0023613:+26086 | None:intergenic |
| AAGCCAGTAACGGTATCTGA+GGG | 0.657172 | tig0023613:-26250 | Msa1410020:CDS |
| AAGAGGAGGAAACGTTCGGA+TGG | 0.658556 | tig0023613:-24090 | Msa1410020:CDS |
| TGACAACATGAAGCCAGTAA+CGG | 0.669534 | tig0023613:-26260 | Msa1410020:CDS |
| GGTGAAGCTAGAGGTCACAC+TGG | 0.683965 | tig0023613:-24015 | Msa1410020:CDS |
| AAAGTATTCAGCAATAAGGG+CGG | 0.684692 | tig0023613:-26160 | Msa1410020:intron |
| CATAAGCAGCTTAGTCACTG+CGG | 0.689323 | tig0023613:-24553 | Msa1410020:CDS |
| TTGTACTTGTTCAATACACG+GGG | 0.704021 | tig0023613:+24386 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAACAAACAAAAAT+AGG | + | tig0023613:26333-26352 | None:intergenic | 10.0% |
| !! | TTTAATAGAACAATTAGTAA+CGG | - | tig0023613:23833-23852 | Msa1410020:three_prime_UTR | 15.0% |
| !!! | TAGCTTTATATATTGTATTA+CGG | + | tig0023613:25198-25217 | None:intergenic | 15.0% |
| !! | AGTCAATTATATATAAAACA+AGG | + | tig0023613:25261-25280 | None:intergenic | 15.0% |
| !! | ACATATAAAAGAAGAAAAAA+CGG | + | tig0023613:25824-25843 | None:intergenic | 15.0% |
| !! | TACTTGTTTATTGAAAATGT+TGG | - | tig0023613:23784-23803 | Msa1410020:three_prime_UTR | 20.0% |
| !!! | TTTCACCAAAAATATGTTTT+AGG | + | tig0023613:24518-24537 | None:intergenic | 20.0% |
| !!! | TTTTTACAATGGAAAAACTT+AGG | - | tig0023613:25145-25164 | Msa1410020:intron | 20.0% |
| !! | ATAATATTACTTGCAATTAC+TGG | + | tig0023613:25411-25430 | None:intergenic | 20.0% |
| !! | GTAATTGCAAGTAATATTAT+TGG | - | tig0023613:25411-25430 | Msa1410020:intron | 20.0% |
| !!! | AATATTGTTTTTCTTCTTGT+AGG | - | tig0023613:25547-25566 | Msa1410020:intron | 20.0% |
| !!! | ATATTGTTTTTCTTCTTGTA+GGG | - | tig0023613:25548-25567 | Msa1410020:intron | 20.0% |
| !! | CATATAAAAGAAGAAAAAAC+GGG | + | tig0023613:25823-25842 | None:intergenic | 20.0% |
| !! | TTGTTTATGTGAAAGATATA+AGG | - | tig0023613:25931-25950 | Msa1410020:CDS | 20.0% |
| !! | TAAAAATAAACTGTTGTATG+AGG | + | tig0023613:26233-26252 | None:intergenic | 20.0% |
| !! | TCTAAAGTATTCAGCAATAA+GGG | - | tig0023613:23980-23999 | Msa1410020:exon | 25.0% |
| !! | TTTCTAGTGTTGTCAAATAT+TGG | - | tig0023613:24313-24332 | Msa1410020:intron | 25.0% |
| ! | CTACCAAAAAACTAGAATAA+CGG | + | tig0023613:24401-24420 | None:intergenic | 25.0% |
| !!! | AAACATATTTTTGGTGAAAC+TGG | - | tig0023613:24519-24538 | Msa1410020:CDS | 25.0% |
| !!! | AACATATTTTTGGTGAAACT+GGG | - | tig0023613:24520-24539 | Msa1410020:CDS | 25.0% |
| !! | TTGTCAAATTGATTCAATAG+CGG | - | tig0023613:24928-24947 | Msa1410020:intron | 25.0% |
| ! | CATACAAATAAAAAAGGGAA+TGG | + | tig0023613:25231-25250 | None:intergenic | 25.0% |
| !!! | TCCCTTTTTTATTTGTATGA+AGG | - | tig0023613:25232-25251 | Msa1410020:intron | 25.0% |
| ! | CCCTTCATACAAATAAAAAA+GGG | + | tig0023613:25236-25255 | None:intergenic | 25.0% |
| !!! | CCCTTTTTTATTTGTATGAA+GGG | - | tig0023613:25233-25252 | Msa1410020:intron | 25.0% |
| ! | ACCCTTCATACAAATAAAAA+AGG | + | tig0023613:25237-25256 | None:intergenic | 25.0% |
| ! | TTATTTAACTGTACTCAATG+CGG | - | tig0023613:25480-25499 | Msa1410020:intron | 25.0% |
| ! | ACATAAACAAACGTATACAA+AGG | + | tig0023613:25921-25940 | None:intergenic | 25.0% |
| AACAATTAGTAACGGTGATT+TGG | - | tig0023613:23841-23860 | Msa1410020:three_prime_UTR | 30.0% | |
| ATTTGGCAATTGTTTATGCA+AGG | - | tig0023613:23858-23877 | Msa1410020:three_prime_UTR | 30.0% | |
| ! | GTGTTTTCAAACATTCAGAT+TGG | - | tig0023613:23939-23958 | Msa1410020:three_prime_UTR | 30.0% |
| TTCAAACATTCAGATTGGAT+AGG | - | tig0023613:23944-23963 | Msa1410020:three_prime_UTR | 30.0% | |
| ATTGGATAGGAAAGTCATTT+GGG | - | tig0023613:23957-23976 | Msa1410020:three_prime_UTR | 30.0% | |
| ! | GTCTAAAGTATTCAGCAATA+AGG | - | tig0023613:23979-23998 | Msa1410020:exon | 30.0% |
| AAAACTAAAGTCCACAATTC+AGG | + | tig0023613:24034-24053 | None:intergenic | 30.0% | |
| !! | CAGCTTTGTTGTTATGTATT+TGG | - | tig0023613:24090-24109 | Msa1410020:CDS | 30.0% |
| TTTAACTACTTCACTTGCAA+GGG | - | tig0023613:24162-24181 | Msa1410020:CDS | 30.0% | |
| TGATACATGTGCTTATCTTT+AGG | - | tig0023613:24272-24291 | Msa1410020:intron | 30.0% | |
| !!! | TTGCCGTTATTCTAGTTTTT+TGG | - | tig0023613:24395-24414 | Msa1410020:CDS | 30.0% |
| ! | AGCAGAAAAAAGAGACTTTT+AGG | - | tig0023613:24437-24456 | Msa1410020:CDS | 30.0% |
| !! | AAATATGTTTTAGGCGGTAA+TGG | + | tig0023613:24509-24528 | None:intergenic | 30.0% |
| ! | TACCGCCTAAAACATATTTT+TGG | - | tig0023613:24510-24529 | Msa1410020:CDS | 30.0% |
| !! | CACCAAAAATATGTTTTAGG+CGG | + | tig0023613:24515-24534 | None:intergenic | 30.0% |
| GTTATCTTCCTTGAAATTTC+GGG | + | tig0023613:24566-24585 | None:intergenic | 30.0% | |
| GGTTATCTTCCTTGAAATTT+CGG | + | tig0023613:24567-24586 | None:intergenic | 30.0% | |
| !! | ATCTTGCAATTCATTGATTC+AGG | + | tig0023613:24588-24607 | None:intergenic | 30.0% |
| AAAATCACGATCAAACTCAT+GGG | + | tig0023613:24712-24731 | None:intergenic | 30.0% | |
| TTGTAAAAATAAGCCACGTT+GGG | + | tig0023613:25134-25153 | None:intergenic | 30.0% | |
| ATTGTAAAAATAAGCCACGT+TGG | + | tig0023613:25135-25154 | None:intergenic | 30.0% | |
| !!! | AACGTGGCTTATTTTTACAA+TGG | - | tig0023613:25134-25153 | Msa1410020:intron | 30.0% |
| TATTGTATTACGGTGAATAC+AGG | + | tig0023613:25188-25207 | None:intergenic | 30.0% | |
| ACAAATAAAAAAGGGAATGG+AGG | + | tig0023613:25228-25247 | None:intergenic | 30.0% | |
| GACTTATTTCAACTGTTATG+CGG | - | tig0023613:25277-25296 | Msa1410020:intron | 30.0% | |
| TGAAATAGAAGATAGTAACG+CGG | + | tig0023613:25317-25336 | None:intergenic | 30.0% | |
| TTTCCGTAATATGCTATTGA+TGG | - | tig0023613:25346-25365 | Msa1410020:intron | 30.0% | |
| ! | GAAAGATATAAGGACTTTTG+AGG | - | tig0023613:25941-25960 | Msa1410020:CDS | 30.0% |
| ATGGAAAGCTTAGAGATTAA+CGG | - | tig0023613:25999-26018 | Msa1410020:CDS | 30.0% | |
| AACAGAAGAAGAATTAGGAT+AGG | + | tig0023613:26093-26112 | None:intergenic | 30.0% | |
| TCCTAATTCTTCTTCTGTTA+TGG | - | tig0023613:26094-26113 | Msa1410020:CDS | 30.0% | |
| CTTAATTCACAACATTCATG+TGG | - | tig0023613:26254-26273 | Msa1410020:CDS | 30.0% | |
| GGTAATTGTAATCTCCATAT+AGG | - | tig0023613:26286-26305 | Msa1410020:CDS | 30.0% | |
| CCAAACATGAATTTCCTATA+TGG | + | tig0023613:26303-26322 | None:intergenic | 30.0% | |
| CCATATAGGAAATTCATGTT+TGG | - | tig0023613:26300-26319 | Msa1410020:CDS | 30.0% | |
| AAATATTTGAGGGATAACCT+TGG | - | tig0023613:26355-26374 | Msa1410020:exon | 30.0% | |
| ! | TCGGTTTTACAGAATCGATT+CGG | - | tig0023613:23917-23936 | Msa1410020:three_prime_UTR | 35.0% |
| GATTGGATAGGAAAGTCATT+TGG | - | tig0023613:23956-23975 | Msa1410020:three_prime_UTR | 35.0% | |
| ! | AAAGTATTCAGCAATAAGGG+CGG | - | tig0023613:23983-24002 | Msa1410020:exon | 35.0% |
| ATGTATTTGGAGATTGTTCC+TGG | - | tig0023613:24103-24122 | Msa1410020:CDS | 35.0% | |
| CTTTAACTACTTCACTTGCA+AGG | - | tig0023613:24161-24180 | Msa1410020:CDS | 35.0% | |
| AACGTATAAACATGTCCTGT+AGG | + | tig0023613:24196-24215 | None:intergenic | 35.0% | |
| ! | GATTTTCACGAACAAAGATC+TGG | - | tig0023613:24217-24236 | Msa1410020:intron | 35.0% |
| !!! | TGGTGTTGCAGTTTTTTTAG+CGG | + | tig0023613:24367-24386 | None:intergenic | 35.0% |
| ! | GAATAACGGCAAAAGTATGA+TGG | + | tig0023613:24387-24406 | None:intergenic | 35.0% |
| CAAAATCACGATCAAACTCA+TGG | + | tig0023613:24713-24732 | None:intergenic | 35.0% | |
| !!! | GATCGTGATTTTGACTTCTT+TGG | - | tig0023613:24720-24739 | Msa1410020:intron | 35.0% |
| ATAAACATGCCCTTCACAAA+TGG | + | tig0023613:24792-24811 | None:intergenic | 35.0% | |
| ACACATGTATCAAACATCAG+AGG | + | tig0023613:24869-24888 | None:intergenic | 35.0% | |
| CAATGGAAAAACTTAGGAGT+CGG | - | tig0023613:25151-25170 | Msa1410020:intron | 35.0% | |
| GAAATAGAAGATAGTAACGC+GGG | + | tig0023613:25316-25335 | None:intergenic | 35.0% | |
| CTATCTTCTATTTCACGTAG+CGG | - | tig0023613:25322-25341 | Msa1410020:intron | 35.0% | |
| GTGCCATCAATAGCATATTA+CGG | + | tig0023613:25352-25371 | None:intergenic | 35.0% | |
| ACTTGAGATGTTCAGTGTAA+AGG | - | tig0023613:25509-25528 | Msa1410020:intron | 35.0% | |
| GCAAAAATGTTACGACATGA+CGG | - | tig0023613:25717-25736 | Msa1410020:intron | 35.0% | |
| TTGTACTTGTTCAATACACG+GGG | + | tig0023613:25760-25779 | None:intergenic | 35.0% | |
| GTTGTACTTGTTCAATACAC+GGG | + | tig0023613:25761-25780 | None:intergenic | 35.0% | |
| CGTTGTACTTGTTCAATACA+CGG | + | tig0023613:25762-25781 | None:intergenic | 35.0% | |
| CGTAGTAGTTATGCAACTAA+TGG | - | tig0023613:25868-25887 | Msa1410020:intron | 35.0% | |
| TTAGAGATTAACGGTGATGA+CGG | - | tig0023613:26008-26027 | Msa1410020:CDS | 35.0% | |
| GCCATAACAGAAGAAGAATT+AGG | + | tig0023613:26098-26117 | None:intergenic | 35.0% | |
| ATTCACAACATTCATGTGGA+AGG | - | tig0023613:26258-26277 | Msa1410020:CDS | 35.0% | |
| TGACAACATGAAGCCAGTAA+CGG | - | tig0023613:23883-23902 | Msa1410020:three_prime_UTR | 40.0% | |
| AAAGTCCACAATTCAGGAGT+AGG | + | tig0023613:24028-24047 | None:intergenic | 40.0% | |
| !!! | GGACTTTAGTTTTAAGCCAC+AGG | - | tig0023613:24041-24060 | Msa1410020:CDS | 40.0% |
| CATATAGAATCTGTGTCCTG+TGG | + | tig0023613:24060-24079 | None:intergenic | 40.0% | |
| ! | TTGAATCTGGTACTGGAAGT+GGG | - | tig0023613:24137-24156 | Msa1410020:CDS | 40.0% |
| AACAAAGATCTGGATCAGCT+AGG | - | tig0023613:24227-24246 | Msa1410020:intron | 40.0% | |
| ATATTGGCGCTATAGCATAG+CGG | - | tig0023613:24329-24348 | Msa1410020:intron | 40.0% | |
| TTAGGCAGTGTTGTCAATTG+TGG | - | tig0023613:24455-24474 | Msa1410020:CDS | 40.0% | |
| GTATGGACGGAATCAGAATT+TGG | + | tig0023613:24655-24674 | None:intergenic | 40.0% | |
| !!! | GATTTTGACTTCTTTGGCCA+TGG | - | tig0023613:24726-24745 | Msa1410020:intron | 40.0% |
| GATTTCCATGAGCATATTGC+TGG | - | tig0023613:24818-24837 | Msa1410020:intron | 40.0% | |
| ATCAAACATCAGAGGAAGTC+TGG | + | tig0023613:24861-24880 | None:intergenic | 40.0% | |
| ATTATTGTGCTATCGCATGG+TGG | - | tig0023613:24952-24971 | Msa1410020:intron | 40.0% | |
| ! | TGCTATTGATGGCACTTTCA+TGG | - | tig0023613:25357-25376 | Msa1410020:intron | 40.0% |
| ! | AGGGATGACTTTGAGAAGAT+TGG | - | tig0023613:25567-25586 | Msa1410020:intron | 40.0% |
| !!! | CTTGGCTGATGCAGTTTTTT+TGG | - | tig0023613:25659-25678 | Msa1410020:intron | 40.0% |
| ! | TTTTGGATCTACCTCAACCT+TGG | - | tig0023613:25676-25695 | Msa1410020:intron | 40.0% |
| ! | CGTAACATTTTTGCAGCTGA+AGG | + | tig0023613:25711-25730 | None:intergenic | 40.0% |
| ACAATGCAATCCAACTTCAC+TGG | - | tig0023613:25792-25811 | Msa1410020:intron | 40.0% | |
| ACATTCATGTGGAAGGTTTC+TGG | - | tig0023613:26265-26284 | Msa1410020:CDS | 40.0% | |
| AAGCCAGTAACGGTATCTGA+GGG | - | tig0023613:23893-23912 | Msa1410020:three_prime_UTR | 45.0% | |
| AGTAACGGTATCTGAGGGAT+CGG | - | tig0023613:23898-23917 | Msa1410020:three_prime_UTR | 45.0% | |
| TAGCACCTACTCCTGAATTG+TGG | - | tig0023613:24020-24039 | Msa1410020:CDS | 45.0% | |
| GATTCAAGAACGACACAACC+AGG | + | tig0023613:24124-24143 | None:intergenic | 45.0% | |
| ! | GGTTGTGTCGTTCTTGAATC+TGG | - | tig0023613:24124-24143 | Msa1410020:CDS | 45.0% |
| GTCGTTCTTGAATCTGGTAC+TGG | - | tig0023613:24130-24149 | Msa1410020:CDS | 45.0% | |
| ! | CTTGAATCTGGTACTGGAAG+TGG | - | tig0023613:24136-24155 | Msa1410020:CDS | 45.0% |
| GCAGTGTTGTCAATTGTGGA+AGG | - | tig0023613:24459-24478 | Msa1410020:CDS | 45.0% | |
| !! | TTTTTGGTGAAACTGGGTCC+TGG | - | tig0023613:24526-24545 | Msa1410020:CDS | 45.0% |
| !! | TCCTTGAAATTTCGGGTTCG+CGG | + | tig0023613:24559-24578 | None:intergenic | 45.0% |
| ACCGCAGAGAATTGTAGGTA+CGG | + | tig0023613:24615-24634 | None:intergenic | 45.0% | |
| ! | GAATCAGAATTTGGTGGGTG+CGG | + | tig0023613:24646-24665 | None:intergenic | 45.0% |
| GGACGGAATCAGAATTTGGT+GGG | + | tig0023613:24651-24670 | None:intergenic | 45.0% | |
| TGGACGGAATCAGAATTTGG+TGG | + | tig0023613:24652-24671 | None:intergenic | 45.0% | |
| ! | CGTATGATTTTGCTACCCCT+TGG | + | tig0023613:24687-24706 | None:intergenic | 45.0% |
| ! | TTTGACTTCTTTGGCCATGG+CGG | - | tig0023613:24729-24748 | Msa1410020:intron | 45.0% |
| !!! | AGATTTTTTTACGCCCGCCA+TGG | + | tig0023613:24746-24765 | None:intergenic | 45.0% |
| CTCATCCAGCAATATGCTCA+TGG | + | tig0023613:24826-24845 | None:intergenic | 45.0% | |
| GGCATTATTGTGCTATCGCA+TGG | - | tig0023613:24949-24968 | Msa1410020:intron | 45.0% | |
| ATGATCCCCTATGAAAACCG+CGG | - | tig0023613:24981-25000 | Msa1410020:intron | 45.0% | |
| CTATCCCAGTTTCGCTATCA+GGG | - | tig0023613:25006-25025 | Msa1410020:intron | 45.0% | |
| ! | ATTGCCCTGATAGCGAAACT+GGG | + | tig0023613:25013-25032 | None:intergenic | 45.0% |
| ! | TATTGCCCTGATAGCGAAAC+TGG | + | tig0023613:25014-25033 | None:intergenic | 45.0% |
| TTTCGCTATCAGGGCAATAG+CGG | - | tig0023613:25015-25034 | Msa1410020:intron | 45.0% | |
| CGTTGACATTCTGAGCAGTA+GGG | + | tig0023613:25447-25466 | None:intergenic | 45.0% | |
| CATAAGCAGCTTAGTCACTG+CGG | - | tig0023613:25590-25609 | Msa1410020:intron | 45.0% | |
| ATAAGCAGCTTAGTCACTGC+GGG | - | tig0023613:25591-25610 | Msa1410020:intron | 45.0% | |
| GGGTTTCCTGAAGAATTTGC+TGG | - | tig0023613:25636-25655 | Msa1410020:intron | 45.0% | |
| !! | TCCTGAAGAATTTGCTGGCT+TGG | - | tig0023613:25641-25660 | Msa1410020:intron | 45.0% |
| !!! | GGACTTTTGAGGTACTCCTA+CGG | - | tig0023613:25952-25971 | Msa1410020:CDS | 45.0% |
| GGACATACGAAGTTCGAGAA+GGG | - | tig0023613:25973-25992 | Msa1410020:CDS | 45.0% | |
| CGAAGTTCGAGAAGGGAAAA+TGG | - | tig0023613:25980-25999 | Msa1410020:CDS | 45.0% | |
| ATGGTTCTCTTCCTTGCAAG+AGG | - | tig0023613:26036-26055 | Msa1410020:CDS | 45.0% | |
| TTGCAAGAGGAGGAAACGTT+CGG | - | tig0023613:26049-26068 | Msa1410020:CDS | 45.0% | |
| TCTGTTATGGCTAGACCATG+TGG | - | tig0023613:26107-26126 | Msa1410020:CDS | 45.0% | |
| !!! | TTTTATAATTAAAATATTTG+AGG | - | tig0023613:26344-26363 | Msa1410020:CDS | 5.0% |
| !! | TTTATAATTAAAATATTTGA+GGG | - | tig0023613:26345-26364 | Msa1410020:CDS | 5.0% |
| GAAGCCAGTAACGGTATCTG+AGG | - | tig0023613:23892-23911 | Msa1410020:three_prime_UTR | 50.0% | |
| GATCCCTCAGATACCGTTAC+TGG | + | tig0023613:23899-23918 | None:intergenic | 50.0% | |
| !! | AAATTTCGGGTTCGCGGGTT+GGG | + | tig0023613:24553-24572 | None:intergenic | 50.0% |
| !! | CCTTGAAATTTCGGGTTCGC+GGG | + | tig0023613:24558-24577 | None:intergenic | 50.0% |
| GCAGAGAATTGTAGGTACGG+CGG | + | tig0023613:24612-24631 | None:intergenic | 50.0% | |
| GCCGTACCTACAATTCTCTG+CGG | - | tig0023613:24611-24630 | Msa1410020:intron | 50.0% | |
| GGATCACCGCAGAGAATTGT+AGG | + | tig0023613:24620-24639 | None:intergenic | 50.0% | |
| ACAATTCTCTGCGGTGATCC+TGG | - | tig0023613:24620-24639 | Msa1410020:intron | 50.0% | |
| TTGGCATGCTGGAGTATGGA+CGG | + | tig0023613:24668-24687 | None:intergenic | 50.0% | |
| TCCATACTCCAGCATGCCAA+GGG | - | tig0023613:24668-24687 | Msa1410020:intron | 50.0% | |
| TTGACTTCTTTGGCCATGGC+GGG | - | tig0023613:24730-24749 | Msa1410020:intron | 50.0% | |
| TTCACAAATGGTTGCCACGG+TGG | + | tig0023613:24780-24799 | None:intergenic | 50.0% | |
| ACCGTGGCAACCATTTGTGA+AGG | - | tig0023613:24779-24798 | Msa1410020:intron | 50.0% | |
| CCCTTCACAAATGGTTGCCA+CGG | + | tig0023613:24783-24802 | None:intergenic | 50.0% | |
| CCGTGGCAACCATTTGTGAA+GGG | - | tig0023613:24780-24799 | Msa1410020:intron | 50.0% | |
| ! | ATAGCGCCGCGGTTTTCATA+GGG | + | tig0023613:24990-25009 | None:intergenic | 50.0% |
| GCTATCCCAGTTTCGCTATC+AGG | - | tig0023613:25005-25024 | Msa1410020:intron | 50.0% | |
| ATCTGCATATGTGCCCAACG+TGG | - | tig0023613:25118-25137 | Msa1410020:intron | 50.0% | |
| ! | GCGTTGACATTCTGAGCAGT+AGG | + | tig0023613:25448-25467 | None:intergenic | 50.0% |
| AGTGAGGGACATTCAAGGTG+AGG | - | tig0023613:25614-25633 | Msa1410020:intron | 50.0% | |
| GTGAGGGACATTCAAGGTGA+GGG | - | tig0023613:25615-25634 | Msa1410020:intron | 50.0% | |
| TGAGGGACATTCAAGGTGAG+GGG | - | tig0023613:25616-25635 | Msa1410020:intron | 50.0% | |
| GCCAAGCCAGCAAATTCTTC+AGG | + | tig0023613:25645-25664 | None:intergenic | 50.0% | |
| GGAATAGCTAGCCAAGGTTG+AGG | + | tig0023613:25690-25709 | None:intergenic | 50.0% | |
| GCTGAAGGAATAGCTAGCCA+AGG | + | tig0023613:25696-25715 | None:intergenic | 50.0% | |
| !! | ACGGGAAGTACCAGTGAAGT+TGG | + | tig0023613:25805-25824 | None:intergenic | 50.0% |
| CTCGAACTTCGTATGTCCGT+AGG | + | tig0023613:25971-25990 | None:intergenic | 50.0% | |
| CGGACATACGAAGTTCGAGA+AGG | - | tig0023613:25972-25991 | Msa1410020:CDS | 50.0% | |
| !! | AACGGTGATGACGGCTCTAA+TGG | - | tig0023613:26017-26036 | Msa1410020:CDS | 50.0% |
| GTTCTCTTCCTTGCAAGAGG+AGG | - | tig0023613:26039-26058 | Msa1410020:CDS | 50.0% | |
| GAACGTTTCCTCCTCTTGCA+AGG | + | tig0023613:26050-26069 | None:intergenic | 50.0% | |
| AAGAGGAGGAAACGTTCGGA+TGG | - | tig0023613:26053-26072 | Msa1410020:CDS | 50.0% | |
| AGACCATGTGGTGAAGCTAG+AGG | - | tig0023613:26119-26138 | Msa1410020:CDS | 50.0% | |
| ! | TGACCTCTAGCTTCACCACA+TGG | + | tig0023613:26125-26144 | None:intergenic | 50.0% |
| !! | GAAATTTCGGGTTCGCGGGT+TGG | + | tig0023613:24554-24573 | None:intergenic | 55.0% |
| CCCGCGAACCCGAAATTTCA+AGG | - | tig0023613:24555-24574 | Msa1410020:CDS | 55.0% | |
| GTCCATACTCCAGCATGCCA+AGG | - | tig0023613:24667-24686 | Msa1410020:intron | 55.0% | |
| CCATACTCCAGCATGCCAAG+GGG | - | tig0023613:24669-24688 | Msa1410020:intron | 55.0% | |
| TTTGCTACCCCTTGGCATGC+TGG | + | tig0023613:24679-24698 | None:intergenic | 55.0% | |
| TCTGCCTCACAATTCCACCG+TGG | - | tig0023613:24763-24782 | Msa1410020:intron | 55.0% | |
| GTTGCCACGGTGGAATTGTG+AGG | + | tig0023613:24770-24789 | None:intergenic | 55.0% | |
| ! | TAGCGCCGCGGTTTTCATAG+GGG | + | tig0023613:24989-25008 | None:intergenic | 55.0% |
| ! | GATAGCGCCGCGGTTTTCAT+AGG | + | tig0023613:24991-25010 | None:intergenic | 55.0% |
| CTTAGTCACTGCGGGAGTGA+GGG | - | tig0023613:25599-25618 | Msa1410020:intron | 55.0% | |
| ACGTTCGGATGGAGCTAGTG+TGG | - | tig0023613:26064-26083 | Msa1410020:CDS | 55.0% | |
| GGTGAAGCTAGAGGTCACAC+TGG | - | tig0023613:26128-26147 | Msa1410020:intron | 55.0% | |
| GCAAGGGCAGTTGCTCCTAC+AGG | - | tig0023613:24178-24197 | Msa1410020:CDS | 60.0% | |
| ! | AGAATTTGGTGGGTGCGGCC+AGG | + | tig0023613:24641-24660 | None:intergenic | 60.0% |
| CCCCTTGGCATGCTGGAGTA+TGG | + | tig0023613:24672-24691 | None:intergenic | 60.0% | |
| GCTTAGTCACTGCGGGAGTG+AGG | - | tig0023613:25598-25617 | Msa1410020:intron | 60.0% | |
| GCGGGAGTGAGGGACATTCA+AGG | - | tig0023613:25609-25628 | Msa1410020:intron | 60.0% | |
| GCGAAACTGGGATAGCGCCG+CGG | + | tig0023613:25001-25020 | None:intergenic | 65.0% | |
| !! | CGGGTTCGCGGGTTGGGTCC+AGG | + | tig0023613:24547-24566 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023613 | gene | 23783 | 26382 | 23783 | ID=Msa1410020;Name=Msa1410020 |
| tig0023613 | mRNA | 23783 | 26382 | 23783 | ID=Msa1410020-mRNA-1;Parent=Msa1410020;Name=Msa1410020-mRNA-1;_AED=0.23;_eAED=0.23;_QI=17|0.66|0.5|1|0.66|0.5|4|204|302 |
| tig0023613 | exon | 23783 | 24219 | 23783 | ID=Msa1410020-mRNA-1:exon:26363;Parent=Msa1410020-mRNA-1 |
| tig0023613 | exon | 24352 | 24596 | 24352 | ID=Msa1410020-mRNA-1:exon:26362;Parent=Msa1410020-mRNA-1 |
| tig0023613 | exon | 25917 | 26142 | 25917 | ID=Msa1410020-mRNA-1:exon:26361;Parent=Msa1410020-mRNA-1 |
| tig0023613 | exon | 26161 | 26382 | 26161 | ID=Msa1410020-mRNA-1:exon:26360;Parent=Msa1410020-mRNA-1 |
| tig0023613 | five_prime_UTR | 26366 | 26382 | 26366 | ID=Msa1410020-mRNA-1:five_prime_utr;Parent=Msa1410020-mRNA-1 |
| tig0023613 | CDS | 26161 | 26365 | 26161 | ID=Msa1410020-mRNA-1:cds;Parent=Msa1410020-mRNA-1 |
| tig0023613 | CDS | 25917 | 26142 | 25917 | ID=Msa1410020-mRNA-1:cds;Parent=Msa1410020-mRNA-1 |
| tig0023613 | CDS | 24352 | 24596 | 24352 | ID=Msa1410020-mRNA-1:cds;Parent=Msa1410020-mRNA-1 |
| tig0023613 | CDS | 23987 | 24219 | 23987 | ID=Msa1410020-mRNA-1:cds;Parent=Msa1410020-mRNA-1 |
| tig0023613 | three_prime_UTR | 23783 | 23986 | 23783 | ID=Msa1410020-mRNA-1:three_prime_utr;Parent=Msa1410020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
