Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142110 | XP_003629679.1 | 98.284 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 0.0 | 805 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142110 | sp|Q6GL77|UBXN1_XENTR | 32.780 | 241 | 127 | 5 | 114 | 327 | 7 | 239 | 2.87e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142110 | G7LHW1 | 98.284 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 0.0 | 805 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0142110 | 0.842777 | 2.101902e-58 | -8.615850e-47 |
| Msa0012220 | Msa0142110 | 0.820641 | 6.161130e-53 | -8.615850e-47 |
| Msa0016540 | Msa0142110 | 0.809798 | 1.583422e-50 | -8.615850e-47 |
| Msa0026660 | Msa0142110 | 0.804874 | 1.752172e-49 | -8.615850e-47 |
| Msa0027580 | Msa0142110 | 0.800473 | 1.417702e-48 | -8.615850e-47 |
| Msa0033880 | Msa0142110 | 0.842578 | 2.373935e-58 | -8.615850e-47 |
| Msa0040800 | Msa0142110 | 0.807253 | 5.532254e-50 | -8.615850e-47 |
| Msa0041690 | Msa0142110 | 0.804641 | 1.959895e-49 | -8.615850e-47 |
| Msa0043860 | Msa0142110 | 0.810571 | 1.078639e-50 | -8.615850e-47 |
| Msa0056270 | Msa0142110 | 0.825401 | 4.781725e-54 | -8.615850e-47 |
| Msa0062350 | Msa0142110 | 0.818064 | 2.382127e-52 | -8.615850e-47 |
| Msa0075340 | Msa0142110 | 0.801523 | 8.648172e-49 | -8.615850e-47 |
| Msa0076780 | Msa0142110 | 0.823212 | 1.563999e-53 | -8.615850e-47 |
| Msa0077010 | Msa0142110 | 0.830016 | 3.722905e-55 | -8.615850e-47 |
| Msa0077900 | Msa0142110 | 0.808513 | 2.984384e-50 | -8.615850e-47 |
| Msa0097950 | Msa0142110 | 0.811541 | 6.648794e-51 | -8.615850e-47 |
| Msa0118600 | Msa0142110 | 0.810400 | 1.174348e-50 | -8.615850e-47 |
| Msa0125790 | Msa0142110 | 0.808323 | 3.276624e-50 | -8.615850e-47 |
| Msa0126770 | Msa0142110 | 0.802365 | 5.808429e-49 | -8.615850e-47 |
| Msa0126840 | Msa0142110 | 0.863509 | 2.366566e-64 | -8.615850e-47 |
| Msa0126880 | Msa0142110 | 0.826121 | 3.228203e-54 | -8.615850e-47 |
| Msa0127040 | Msa0142110 | 0.830846 | 2.333079e-55 | -8.615850e-47 |
| Msa0127850 | Msa0142110 | 0.842028 | 3.321075e-58 | -8.615850e-47 |
| Msa0142110 | Msa0142410 | 0.836186 | 1.084393e-56 | -8.615850e-47 |
| Msa0142110 | Msa0144380 | 0.808091 | 3.672724e-50 | -8.615850e-47 |
| Msa0142110 | Msa0166750 | 0.814603 | 1.416483e-51 | -8.615850e-47 |
| Msa0142110 | Msa0167480 | 0.820660 | 6.100700e-53 | -8.615850e-47 |
| Msa0142110 | Msa0168090 | 0.835517 | 1.602157e-56 | -8.615850e-47 |
| Msa0142110 | Msa0168940 | 0.845186 | 4.750691e-59 | -8.615850e-47 |
| Msa0142110 | Msa0171850 | 0.821522 | 3.860445e-53 | -8.615850e-47 |
| Msa0142110 | Msa0171940 | 0.827650 | 1.391797e-54 | -8.615850e-47 |
| Msa0142110 | Msa0174000 | 0.858821 | 6.330507e-63 | -8.615850e-47 |
| Msa0142110 | Msa0175200 | 0.818729 | 1.683885e-52 | -8.615850e-47 |
| Msa0142110 | Msa0215360 | 0.832336 | 1.001881e-55 | -8.615850e-47 |
| Msa0142110 | Msa0221030 | 0.829158 | 6.018086e-55 | -8.615850e-47 |
| Msa0142110 | Msa0221600 | 0.840534 | 8.208775e-58 | -8.615850e-47 |
| Msa0142110 | Msa0223170 | 0.815969 | 7.038248e-52 | -8.615850e-47 |
| Msa0142110 | Msa0231100 | 0.809542 | 1.796988e-50 | -8.615850e-47 |
| Msa0142110 | Msa0241830 | 0.824404 | 8.221595e-54 | -8.615850e-47 |
| Msa0142110 | Msa0244980 | 0.809225 | 2.102042e-50 | -8.615850e-47 |
| Msa0142110 | Msa0245430 | 0.804779 | 1.833623e-49 | -8.615850e-47 |
| Msa0142110 | Msa0245580 | 0.824923 | 6.204427e-54 | -8.615850e-47 |
| Msa0142110 | Msa0247060 | 0.838599 | 2.612782e-57 | -8.615850e-47 |
| Msa0142110 | Msa0248460 | 0.878125 | 3.616633e-69 | -8.615850e-47 |
| Msa0142110 | Msa0252410 | 0.802438 | 5.610610e-49 | -8.615850e-47 |
| Msa0142110 | Msa0262480 | 0.843735 | 1.166805e-58 | -8.615850e-47 |
| Msa0142110 | Msa0263220 | 0.802062 | 6.702888e-49 | -8.615850e-47 |
| Msa0142110 | Msa0270210 | 0.810359 | 1.199090e-50 | -8.615850e-47 |
| Msa0142110 | Msa0289180 | 0.841082 | 5.895065e-58 | -8.615850e-47 |
| Msa0142110 | Msa0295250 | 0.826247 | 3.012996e-54 | -8.615850e-47 |
| Msa0142110 | Msa0296250 | 0.841002 | 6.185795e-58 | -8.615850e-47 |
| Msa0142110 | Msa0300350 | 0.857875 | 1.211138e-62 | -8.615850e-47 |
| Msa0142110 | Msa0322090 | 0.817402 | 3.360293e-52 | -8.615850e-47 |
| Msa0142110 | Msa0332640 | 0.811090 | 8.329116e-51 | -8.615850e-47 |
| Msa0142110 | Msa0333190 | 0.806827 | 6.808530e-50 | -8.615850e-47 |
| Msa0142110 | Msa0363060 | 0.830109 | 3.533027e-55 | -8.615850e-47 |
| Msa0142110 | Msa0383130 | 0.822438 | 2.368825e-53 | -8.615850e-47 |
| Msa0142110 | Msa0384670 | 0.842068 | 3.240563e-58 | -8.615850e-47 |
| Msa0142110 | Msa0434570 | 0.820656 | 6.112906e-53 | -8.615850e-47 |
| Msa0142110 | Msa0434770 | 0.833009 | 6.822097e-56 | -8.615850e-47 |
| Msa0142110 | Msa0436200 | 0.824336 | 8.530017e-54 | -8.615850e-47 |
| Msa0142110 | Msa0443390 | 0.816400 | 5.638931e-52 | -8.615850e-47 |
| Msa0142110 | Msa0468490 | 0.818973 | 1.481848e-52 | -8.615850e-47 |
| Msa0142110 | Msa0474700 | 0.830681 | 2.560715e-55 | -8.615850e-47 |
| Msa0142110 | Msa0478580 | 0.846271 | 2.412072e-59 | -8.615850e-47 |
| Msa0142110 | Msa0479330 | 0.815000 | 1.156875e-51 | -8.615850e-47 |
| Msa0142110 | Msa0490820 | 0.819615 | 1.058349e-52 | -8.615850e-47 |
| Msa0142110 | Msa0511770 | 0.812930 | 3.308539e-51 | -8.615850e-47 |
| Msa0142110 | Msa0524590 | 0.804496 | 2.101094e-49 | -8.615850e-47 |
| Msa0142110 | Msa0534750 | 0.841132 | 5.719027e-58 | -8.615850e-47 |
| Msa0142110 | Msa0547990 | 0.806828 | 6.804359e-50 | -8.615850e-47 |
| Msa0142110 | Msa0550540 | 0.830686 | 2.553450e-55 | -8.615850e-47 |
| Msa0142110 | Msa0550570 | 0.851881 | 6.646753e-61 | -8.615850e-47 |
| Msa0142110 | Msa0561430 | 0.825051 | 5.788592e-54 | -8.615850e-47 |
| Msa0142110 | Msa0593700 | 0.849223 | 3.711972e-60 | -8.615850e-47 |
| Msa0142110 | Msa0599900 | 0.802593 | 5.212856e-49 | -8.615850e-47 |
| Msa0142110 | Msa0609000 | 0.807744 | 4.352555e-50 | -8.615850e-47 |
| Msa0142110 | Msa0615580 | 0.815055 | 1.124573e-51 | -8.615850e-47 |
| Msa0142110 | Msa0618930 | 0.803140 | 4.018994e-49 | -8.615850e-47 |
| Msa0142110 | Msa0619860 | 0.836738 | 7.848410e-57 | -8.615850e-47 |
| Msa0142110 | Msa0633570 | 0.839757 | 1.309234e-57 | -8.615850e-47 |
| Msa0142110 | Msa0644030 | 0.805079 | 1.587275e-49 | -8.615850e-47 |
| Msa0142110 | Msa0656810 | 0.952443 | 2.396618e-110 | -8.615850e-47 |
| Msa0142110 | Msa0659990 | 0.805158 | 1.527736e-49 | -8.615850e-47 |
| Msa0142110 | Msa0679100 | 0.806241 | 9.050772e-50 | -8.615850e-47 |
| Msa0142110 | Msa0687230 | 0.840601 | 7.883698e-58 | -8.615850e-47 |
| Msa0142110 | Msa0694990 | 0.821527 | 3.850115e-53 | -8.615850e-47 |
| Msa0142110 | Msa0699190 | 0.840877 | 6.674143e-58 | -8.615850e-47 |
| Msa0142110 | Msa0744100 | 0.824730 | 6.888887e-54 | -8.615850e-47 |
| Msa0142110 | Msa0756930 | 0.803746 | 3.008565e-49 | -8.615850e-47 |
| Msa0142110 | Msa0769590 | 0.803842 | 2.873968e-49 | -8.615850e-47 |
| Msa0142110 | Msa0772770 | 0.816770 | 4.658411e-52 | -8.615850e-47 |
| Msa0142110 | Msa0794050 | 0.801929 | 7.140042e-49 | -8.615850e-47 |
| Msa0142110 | Msa0818770 | 0.803814 | 2.912306e-49 | -8.615850e-47 |
| Msa0142110 | Msa0819540 | 0.815269 | 1.007934e-51 | -8.615850e-47 |
| Msa0142110 | Msa0822170 | 0.822117 | 2.812345e-53 | -8.615850e-47 |
| Msa0142110 | Msa0822180 | 0.821419 | 4.078354e-53 | -8.615850e-47 |
| Msa0142110 | Msa0825270 | 0.843067 | 1.760103e-58 | -8.615850e-47 |
| Msa0142110 | Msa0826510 | 0.849995 | 2.260228e-60 | -8.615850e-47 |
| Msa0142110 | Msa0864420 | 0.810866 | 9.314420e-51 | -8.615850e-47 |
| Msa0142110 | Msa0865620 | 0.838191 | 3.329168e-57 | -8.615850e-47 |
| Msa0142110 | Msa0869010 | 0.818876 | 1.559346e-52 | -8.615850e-47 |
| Msa0142110 | Msa0870650 | 0.817583 | 3.058567e-52 | -8.615850e-47 |
| Msa0142110 | Msa0883520 | 0.801084 | 1.063920e-48 | -8.615850e-47 |
| Msa0142110 | Msa0913240 | 0.845617 | 3.631876e-59 | -8.615850e-47 |
| Msa0142110 | Msa0943170 | 0.841277 | 5.238933e-58 | -8.615850e-47 |
| Msa0142110 | Msa0963020 | 0.858938 | 5.841337e-63 | -8.615850e-47 |
| Msa0142110 | Msa0981430 | 0.831653 | 1.477265e-55 | -8.615850e-47 |
| Msa0142110 | Msa1017510 | 0.805621 | 1.221757e-49 | -8.615850e-47 |
| Msa0142110 | Msa1025940 | 0.816456 | 5.478693e-52 | -8.615850e-47 |
| Msa0142110 | Msa1027250 | 0.837045 | 6.551459e-57 | -8.615850e-47 |
| Msa0142110 | Msa1027300 | 0.821733 | 3.451614e-53 | -8.615850e-47 |
| Msa0142110 | Msa1027360 | 0.811375 | 7.225277e-51 | -8.615850e-47 |
| Msa0142110 | Msa1064560 | 0.811692 | 6.163826e-51 | -8.615850e-47 |
| Msa0142110 | Msa1070390 | 0.832850 | 7.470770e-56 | -8.615850e-47 |
| Msa0142110 | Msa1083880 | 0.852260 | 5.188848e-61 | -8.615850e-47 |
| Msa0142110 | Msa1089270 | 0.830965 | 2.182178e-55 | -8.615850e-47 |
| Msa0142110 | Msa1093330 | 0.808016 | 3.809321e-50 | -8.615850e-47 |
| Msa0142110 | Msa1122820 | 0.800381 | 1.480175e-48 | -8.615850e-47 |
| Msa0142110 | Msa1123350 | 0.817961 | 2.513659e-52 | -8.615850e-47 |
| Msa0142110 | Msa1126850 | 0.819774 | 9.733542e-53 | -8.615850e-47 |
| Msa0142110 | Msa1127540 | 0.814457 | 1.526138e-51 | -8.615850e-47 |
| Msa0142110 | Msa1140430 | 0.809314 | 2.011500e-50 | -8.615850e-47 |
| Msa0142110 | Msa1165750 | 0.800354 | 1.498868e-48 | -8.615850e-47 |
| Msa0142110 | Msa1165780 | 0.828822 | 7.259692e-55 | -8.615850e-47 |
| Msa0142110 | Msa1166870 | 0.827937 | 1.187418e-54 | -8.615850e-47 |
| Msa0142110 | Msa1173900 | 0.803734 | 3.026541e-49 | -8.615850e-47 |
| Msa0142110 | Msa1175390 | 0.823910 | 1.073749e-53 | -8.615850e-47 |
| Msa0142110 | Msa1179950 | 0.810477 | 1.130773e-50 | -8.615850e-47 |
| Msa0142110 | Msa1179980 | 0.837744 | 4.339056e-57 | -8.615850e-47 |
| Msa0142110 | Msa1183450 | 0.801056 | 1.077888e-48 | -8.615850e-47 |
| Msa0142110 | Msa1195300 | 0.816730 | 4.756379e-52 | -8.615850e-47 |
| Msa0142110 | Msa1201810 | 0.809498 | 1.836706e-50 | -8.615850e-47 |
| Msa0142110 | Msa1202580 | 0.819363 | 1.207779e-52 | -8.615850e-47 |
| Msa0142110 | Msa1205850 | 0.845092 | 5.038312e-59 | -8.615850e-47 |
| Msa0142110 | Msa1206650 | 0.818292 | 2.115389e-52 | -8.615850e-47 |
| Msa0142110 | Msa1211770 | 0.825284 | 5.096833e-54 | -8.615850e-47 |
| Msa0142110 | Msa1211830 | 0.825679 | 4.110910e-54 | -8.615850e-47 |
| Msa0142110 | Msa1226610 | 0.810365 | 1.194999e-50 | -8.615850e-47 |
| Msa0142110 | Msa1227690 | 0.819063 | 1.414059e-52 | -8.615850e-47 |
| Msa0142110 | Msa1242640 | 0.801337 | 9.442995e-49 | -8.615850e-47 |
| Msa0142110 | Msa1256770 | 0.817909 | 2.582548e-52 | -8.615850e-47 |
| Msa0142110 | Msa1270620 | 0.838784 | 2.340249e-57 | -8.615850e-47 |
| Msa0142110 | Msa1270690 | 0.837153 | 6.146826e-57 | -8.615850e-47 |
| Msa0142110 | Msa1276970 | 0.841291 | 5.195155e-58 | -8.615850e-47 |
| Msa0142110 | Msa1277360 | 0.817608 | 3.019239e-52 | -8.615850e-47 |
| Msa0142110 | Msa1294840 | 0.804978 | 1.666170e-49 | -8.615850e-47 |
| Msa0142110 | Msa1299700 | 0.802858 | 4.594390e-49 | -8.615850e-47 |
| Msa0142110 | Msa1306990 | 0.818571 | 1.828243e-52 | -8.615850e-47 |
| Msa0142110 | Msa1329300 | 0.822056 | 2.905231e-53 | -8.615850e-47 |
| Msa0142110 | Msa1329450 | 0.830469 | 2.885445e-55 | -8.615850e-47 |
| Msa0142110 | Msa1331710 | 0.815881 | 7.363555e-52 | -8.615850e-47 |
| Msa0142110 | Msa1333970 | 0.815464 | 9.120502e-52 | -8.615850e-47 |
| Msa0142110 | Msa1344310 | 0.813661 | 2.286417e-51 | -8.615850e-47 |
| Msa0142110 | Msa1349570 | 0.803384 | 3.577546e-49 | -8.615850e-47 |
| Msa0142110 | Msa1351540 | 0.809943 | 1.474050e-50 | -8.615850e-47 |
| Msa0142110 | Msa1356610 | 0.804552 | 2.044684e-49 | -8.615850e-47 |
| Msa0142110 | Msa1363860 | 0.800181 | 1.625814e-48 | -8.615850e-47 |
| Msa0142110 | Msa1364160 | 0.812738 | 3.645754e-51 | -8.615850e-47 |
| Msa0142110 | Msa1369190 | 0.802013 | 6.860564e-49 | -8.615850e-47 |
| Msa0142110 | Msa1373820 | 0.814792 | 1.286378e-51 | -8.615850e-47 |
| Msa0142110 | Msa1380970 | 0.809390 | 1.937517e-50 | -8.615850e-47 |
| Msa0142110 | Msa1385810 | 0.820435 | 6.868295e-53 | -8.615850e-47 |
| Msa0142110 | Msa1391480 | 0.835146 | 1.988627e-56 | -8.615850e-47 |
| Msa0142110 | Msa1398790 | 0.830313 | 3.150123e-55 | -8.615850e-47 |
| Msa0142110 | Msa1403570 | 0.820662 | 6.092576e-53 | -8.615850e-47 |
| Msa0142110 | Msa1409260 | 0.832471 | 9.277553e-56 | -8.615850e-47 |
| Msa0142110 | Msa1410020 | 0.813085 | 3.059296e-51 | -8.615850e-47 |
| Msa0142110 | Msa1411950 | 0.818758 | 1.658578e-52 | -8.615850e-47 |
| Msa0142110 | Msa1420660 | 0.831672 | 1.461509e-55 | -8.615850e-47 |
| Msa0142110 | Msa1427160 | 0.814553 | 1.453321e-51 | -8.615850e-47 |
| Msa0142110 | Msa1457790 | 0.801924 | 7.157079e-49 | -8.615850e-47 |
| Msa0142110 | Msa1459910 | 0.840463 | 8.563574e-58 | -8.615850e-47 |
| Msa0142110 | Msa1459960 | 0.824722 | 6.918249e-54 | -8.615850e-47 |
| Msa0142110 | Msa1462470 | 0.805015 | 1.636746e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142110 | MtrunA17_Chr8g0378341 | 98.284 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 0.0 | 805 |
| Msa0142110 | MtrunA17_Chr8g0339951 | 58.170 | 306 | 125 | 2 | 104 | 408 | 1 | 304 | 4.89e-118 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0142110 | AT1G04850.1 | 76.755 | 413 | 91 | 3 | 1 | 408 | 1 | 413 | 0.0 | 561 |
| Msa0142110 | AT1G04850.2 | 75.633 | 316 | 74 | 2 | 96 | 408 | 9 | 324 | 2.44e-140 | 403 |
| Msa0142110 | AT5G48690.1 | 52.997 | 317 | 141 | 6 | 98 | 408 | 2 | 316 | 8.81e-87 | 267 |
| Msa0142110 | AT5G48690.2 | 53.171 | 205 | 90 | 4 | 209 | 408 | 63 | 266 | 1.43e-59 | 195 |
| Msa0142110 | AT5G48690.3 | 53.670 | 218 | 94 | 5 | 98 | 310 | 2 | 217 | 7.24e-48 | 163 |
Find 119 sgRNAs with CRISPR-Local
Find 559 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATGGCATTTGTTTCTTC+TGG | 0.107206 | 1_4:-911431 | None:intergenic |
| TTGATTCAGTTGTAATTTAA+AGG | 0.172831 | 1_4:+916833 | Msa0142110:three_prime_UTR |
| TTAGGAGCCTCTAAACTTAT+TGG | 0.215263 | 1_4:-910041 | None:intergenic |
| GTGTATATCTAAAATATTTC+AGG | 0.248827 | 1_4:+917030 | Msa0142110:three_prime_UTR |
| GTTCAGATCCAGCTGAATTT+AGG | 0.250912 | 1_4:-916769 | None:intergenic |
| TTCAGTGGATTCAGAGAAAT+TGG | 0.259726 | 1_4:-909774 | None:intergenic |
| CCACATAAGTTAGAAGAGTT+TGG | 0.265357 | 1_4:-915973 | None:intergenic |
| CTCCCTCATCTGCTCGGTTT+TGG | 0.272816 | 1_4:-914144 | None:intergenic |
| TGGGATTCTGAATTCCCTTT+AGG | 0.291163 | 1_4:-910059 | None:intergenic |
| TTTCAACAGCCCGTGCAATA+AGG | 0.291576 | 1_4:+910468 | Msa0142110:CDS |
| TGCAGAGTTTCCTGCCAATT+AGG | 0.314647 | 1_4:+914114 | Msa0142110:intron |
| GAGCTTCCCAAAGTACTCTT+TGG | 0.335831 | 1_4:-917066 | None:intergenic |
| GAATGGCATTTGTTTCTTCT+GGG | 0.341561 | 1_4:-911430 | None:intergenic |
| CGAAACGAATCACCGGAATA+TGG | 0.349302 | 1_4:+909664 | Msa0142110:exon |
| CTCTACAACAGCTGCAGGCT+TGG | 0.356379 | 1_4:-914010 | None:intergenic |
| CATTTGTTTCTTCTGGGGTA+AGG | 0.356425 | 1_4:-911424 | None:intergenic |
| AGCAAAGCCAATAAGTTTAG+AGG | 0.359150 | 1_4:+910034 | Msa0142110:CDS |
| AGCTGTTGTAGAGGAGAAAA+AGG | 0.364152 | 1_4:+914020 | Msa0142110:CDS |
| ATTATTACCAAAGAGTACTT+TGG | 0.371238 | 1_4:+917059 | Msa0142110:three_prime_UTR |
| ATCACTAGTTCCACCCTCTT+GGG | 0.372205 | 1_4:-910078 | None:intergenic |
| ACTTATTGGCTTTGCTGCTT+CGG | 0.374866 | 1_4:-910027 | None:intergenic |
| GATCACTAGTTCCACCCTCT+TGG | 0.376605 | 1_4:-910079 | None:intergenic |
| GGTGGATCCAATTGGTATAT+TGG | 0.380323 | 1_4:-909639 | None:intergenic |
| TTGAATTCCTTGAAATTTGC+GGG | 0.388129 | 1_4:+916684 | Msa0142110:CDS |
| TCTCAAACCCGCAAATTTCA+AGG | 0.390275 | 1_4:-916691 | None:intergenic |
| GCGAAACCCCTGCCATATTC+CGG | 0.397441 | 1_4:-909676 | None:intergenic |
| TTCAGTGTGTCCAGTTCTCT+TGG | 0.403511 | 1_4:-909988 | None:intergenic |
| TTCAACAGCCCGTGCAATAA+GGG | 0.403545 | 1_4:+910469 | Msa0142110:CDS |
| TTGGCTGTTGAAGGCTCCTC+TGG | 0.404673 | 1_4:-913991 | None:intergenic |
| ATTTGTTTCTTCTGGGGTAA+GGG | 0.408133 | 1_4:-911423 | None:intergenic |
| ATACCTTAGTTCCTTTAGAA+TGG | 0.408926 | 1_4:-911447 | None:intergenic |
| GCCTCGAGGCTGCTGTAACT+TGG | 0.413530 | 1_4:+911116 | Msa0142110:CDS |
| GTTTCGTCGGTGGATCCAAT+TGG | 0.417788 | 1_4:-909647 | None:intergenic |
| CCAAACTCTTCTAACTTATG+TGG | 0.420810 | 1_4:+915973 | Msa0142110:CDS |
| TTTGCAGGTTGTTAGCTTTG+AGG | 0.421356 | 1_4:+913714 | Msa0142110:intron |
| TTATTACCAAAGAGTACTTT+GGG | 0.429845 | 1_4:+917060 | Msa0142110:three_prime_UTR |
| TTCTCCTCTACAACAGCTGC+AGG | 0.432013 | 1_4:-914015 | None:intergenic |
| GCTTGAGGAACTTGAATCAA+TGG | 0.436658 | 1_4:+910442 | Msa0142110:CDS |
| GATTTACACACCAAGAGAAC+TGG | 0.446924 | 1_4:+909978 | Msa0142110:CDS |
| GGTGTAGGTAAGGGTGAGAA+GGG | 0.454330 | 1_4:-909578 | None:intergenic |
| CTTGAGGAACTTGAATCAAT+GGG | 0.458924 | 1_4:+910443 | Msa0142110:CDS |
| GCTGCAGGCTTGGCTGTTGA+AGG | 0.461571 | 1_4:-914000 | None:intergenic |
| CGACCAATCCCACGTAGATC+CGG | 0.461930 | 1_4:-909553 | None:intergenic |
| TGGCTTTATAGGTGTAGGTA+AGG | 0.464185 | 1_4:-909588 | None:intergenic |
| AGAAGAAGAAGAGAAGAGAA+TGG | 0.464524 | 1_4:+912082 | Msa0142110:CDS |
| ATTGAATTCCTTGAAATTTG+CGG | 0.466357 | 1_4:+916683 | Msa0142110:CDS |
| TGGTGGCAGGCCTAATTGGC+AGG | 0.466592 | 1_4:-914124 | None:intergenic |
| TTGCGGTACTCTCTTGAAAT+CGG | 0.467068 | 1_4:+909712 | Msa0142110:CDS |
| GTTTCTTCTGGGGTAAGGGA+GGG | 0.467929 | 1_4:-911419 | None:intergenic |
| AGGTGTAGGTAAGGGTGAGA+AGG | 0.474369 | 1_4:-909579 | None:intergenic |
| AGAGAGAATCAAGCAAAAGT+TGG | 0.474657 | 1_4:+913769 | Msa0142110:CDS |
| TAAGTTTAGAGGCTCCTAAA+GGG | 0.480337 | 1_4:+910045 | Msa0142110:CDS |
| TGTTTCTTCTGGGGTAAGGG+AGG | 0.481794 | 1_4:-911420 | None:intergenic |
| CAAACTCTTCTAACTTATGT+GGG | 0.485491 | 1_4:+915974 | Msa0142110:CDS |
| CCGGTGATTCGTTTCGTCGG+TGG | 0.485837 | 1_4:-909657 | None:intergenic |
| GAACCGGATCTACGTGGGAT+TGG | 0.491480 | 1_4:+909550 | Msa0142110:five_prime_UTR |
| AAGAAGACAACGAGAGAAAA+CGG | 0.494209 | 1_4:+913617 | Msa0142110:CDS |
| ATGCCATTCTAAAGGAACTA+AGG | 0.501820 | 1_4:+911444 | Msa0142110:CDS |
| ACGAATCACCGGAATATGGC+AGG | 0.506192 | 1_4:+909668 | Msa0142110:exon |
| GCGGAAAGAAGACGAAAACT+TGG | 0.508359 | 1_4:+913961 | Msa0142110:CDS |
| TTTGAGGAAAGCAGAGAAAG+AGG | 0.508582 | 1_4:+913730 | Msa0142110:CDS |
| AATGGAGAGAGAAAGAGAAA+AGG | 0.510480 | 1_4:+912100 | Msa0142110:CDS |
| GGAGAGAATTCGAGTCGGTA+AGG | 0.511409 | 1_4:+913570 | Msa0142110:intron |
| AGAAACAAATGCCATTCTAA+AGG | 0.511452 | 1_4:+911436 | Msa0142110:CDS |
| ATAAGTTTAGAGGCTCCTAA+AGG | 0.517070 | 1_4:+910044 | Msa0142110:CDS |
| AGCTATAATCTTAAGGGAGA+AGG | 0.520095 | 1_4:+912046 | Msa0142110:intron |
| GAAAGAGTTGGTGCTTTGAA+AGG | 0.523288 | 1_4:+916656 | Msa0142110:CDS |
| AAGGGCATTTCATCTATGTC+AGG | 0.523907 | 1_4:-911160 | None:intergenic |
| CAAGCCTGCAGCTGTTGTAG+AGG | 0.527882 | 1_4:+914011 | Msa0142110:CDS |
| ATTGCAGTCCTAAATTCAGC+TGG | 0.528514 | 1_4:+916761 | Msa0142110:CDS |
| TGTATATCTAAAATATTTCA+GGG | 0.529678 | 1_4:+917031 | Msa0142110:three_prime_UTR |
| TTGGAATGCTCTCTTCACTC+TGG | 0.530560 | 1_4:-915954 | None:intergenic |
| CCACCAAAACCGAGCAGATG+AGG | 0.536858 | 1_4:+914141 | Msa0142110:CDS |
| AAGAAGACGAAAACTTGGAT+TGG | 0.539216 | 1_4:+913966 | Msa0142110:CDS |
| GAGCAGACGAGGTTGAGAAC+GGG | 0.547682 | 1_4:-909797 | None:intergenic |
| AATGGCATTTGTTTCTTCTG+GGG | 0.548701 | 1_4:-911429 | None:intergenic |
| AATGAAGTGCCCTTATTGCA+CGG | 0.554419 | 1_4:-910478 | None:intergenic |
| ATGAAGTGCCCTTATTGCAC+GGG | 0.556855 | 1_4:-910477 | None:intergenic |
| TGCGGGTTTGAGAAGATCGA+TGG | 0.557070 | 1_4:+916701 | Msa0142110:CDS |
| TTCTATGGCTTTATAGGTGT+AGG | 0.562038 | 1_4:-909593 | None:intergenic |
| TCGCTTCAGTGCGGTGATTG+CGG | 0.566476 | 1_4:+909695 | Msa0142110:CDS |
| GCAATATCAACCTTCTCCCT+AGG | 0.569294 | 1_4:-916743 | None:intergenic |
| GAAAAGCTGCGTTACTAAGA+CGG | 0.574213 | 1_4:-916039 | None:intergenic |
| CAGAGAAAGAGGAAGAGCGA+AGG | 0.574752 | 1_4:+913741 | Msa0142110:CDS |
| TGACATAGATGAAATGCCCT+TGG | 0.574903 | 1_4:+911162 | Msa0142110:CDS |
| ATTCCGGTGATTCGTTTCGT+CGG | 0.576659 | 1_4:-909660 | None:intergenic |
| CAAGCACTCCCTCATCTGCT+CGG | 0.577094 | 1_4:-914150 | None:intergenic |
| CTATGTCAGGCGTATTCTCG+TGG | 0.577322 | 1_4:-911147 | None:intergenic |
| GAGGTTGAGAACGGGTTCAG+TGG | 0.580165 | 1_4:-909789 | None:intergenic |
| GGAACTAGTGATCAGAATGA+AGG | 0.581651 | 1_4:+910089 | Msa0142110:CDS |
| CACCAAAACCGAGCAGATGA+GGG | 0.583334 | 1_4:+914142 | Msa0142110:CDS |
| AGAGTTGGTGCTTTGAAAGG+AGG | 0.583659 | 1_4:+916659 | Msa0142110:CDS |
| GGAGCAGACGAGGTTGAGAA+CGG | 0.583672 | 1_4:-909798 | None:intergenic |
| AGAGAAAGAGGAAGAGCGAA+GGG | 0.587718 | 1_4:+913742 | Msa0142110:CDS |
| AGGAGTTGCTTGAAGCAAAG+AGG | 0.588418 | 1_4:+913590 | Msa0142110:CDS |
| TCGGCAAGGTTTGGAGCAAG+TGG | 0.589086 | 1_4:-909819 | None:intergenic |
| GCAAAAGTTGGAAGAAGACA+AGG | 0.592876 | 1_4:+913781 | Msa0142110:CDS |
| TGGAGCAAGTGGAGCAGACG+AGG | 0.599392 | 1_4:-909808 | None:intergenic |
| GAATCACCGGAATATGGCAG+GGG | 0.604375 | 1_4:+909670 | Msa0142110:exon |
| CGAATCACCGGAATATGGCA+GGG | 0.607477 | 1_4:+909669 | Msa0142110:exon |
| CCACCGACGAAACGAATCAC+CGG | 0.609568 | 1_4:+909657 | Msa0142110:five_prime_UTR |
| GGCTTTATAGGTGTAGGTAA+GGG | 0.613488 | 1_4:-909587 | None:intergenic |
| AAAACTTGGATTGGCTCCAG+AGG | 0.621215 | 1_4:+913975 | Msa0142110:CDS |
| AAACTCTTCTAACTTATGTG+GGG | 0.629765 | 1_4:+915975 | Msa0142110:CDS |
| TTCAGAGAAATTGGAGTGTG+AGG | 0.636378 | 1_4:-909765 | None:intergenic |
| AGTTTAAGCAAAATATTGAG+AGG | 0.637294 | 1_4:+917008 | Msa0142110:three_prime_UTR |
| TGTGTTTAACAGGAAAGAGT+TGG | 0.642404 | 1_4:+916644 | Msa0142110:intron |
| AATTCAGAATCCCAAGAGGG+TGG | 0.646932 | 1_4:+910068 | Msa0142110:CDS |
| GGGAATTCAGAATCCCAAGA+GGG | 0.649229 | 1_4:+910065 | Msa0142110:CDS |
| AGAAGCTTTAGCTTTACTGA+CGG | 0.652551 | 1_4:-911393 | None:intergenic |
| TTCTCTCAAGCAGAACCACA+AGG | 0.666147 | 1_4:+914175 | Msa0142110:CDS |
| GCATTAGAACCGGATCTACG+TGG | 0.669522 | 1_4:+909544 | None:intergenic |
| CATTAGAACCGGATCTACGT+GGG | 0.670014 | 1_4:+909545 | None:intergenic |
| TATAGGTAACACTAGCCTCG+AGG | 0.680236 | 1_4:+911102 | Msa0142110:intron |
| TCCAAGTTACAGCAGCCTCG+AGG | 0.700049 | 1_4:-911117 | None:intergenic |
| GCAGGGGTTTCGCTTCAGTG+CGG | 0.707654 | 1_4:+909686 | Msa0142110:CDS |
| ATTCAGGAGAGAATTCGAGT+CGG | 0.712094 | 1_4:+913565 | Msa0142110:intron |
| AGGGAATTCAGAATCCCAAG+AGG | 0.725266 | 1_4:+910064 | Msa0142110:CDS |
| GGGTTTGAGAAGATCGATGG+CGG | 0.728380 | 1_4:+916704 | Msa0142110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAAAAATACTTGTA+TGG | + | chr1_4:910528-910547 | Msa0142110:intron | 10.0% |
| !! | AAATTTAAAAATAACATTGT+TGG | + | chr1_4:910818-910837 | Msa0142110:intron | 10.0% |
| !!! | GATTTTATATTTACAATATT+GGG | + | chr1_4:912197-912216 | Msa0142110:intron | 10.0% |
| !!! | ATTTTATATTTACAATATTG+GGG | + | chr1_4:912198-912217 | Msa0142110:intron | 10.0% |
| !! | AAAAAAAAAAATTGTATTAG+AGG | - | chr1_4:912509-912528 | None:intergenic | 10.0% |
| !! | TTTCAAAATTTCAAAAAAAT+AGG | - | chr1_4:914086-914105 | None:intergenic | 10.0% |
| !!! | ATGTTTTTTTAAGATTTTTA+TGG | + | chr1_4:914519-914538 | Msa0142110:intron | 10.0% |
| !!! | TGTTTTTTTAAGATTTTTAT+GGG | + | chr1_4:914520-914539 | Msa0142110:intron | 10.0% |
| !!! | CTATTTAATAATTTCTTTTA+AGG | - | chr1_4:914911-914930 | None:intergenic | 10.0% |
| !! | CTTAAAAGAAATTATTAAAT+AGG | + | chr1_4:914909-914928 | Msa0142110:intron | 10.0% |
| !! | AATGATATAAAATTATTTGT+GGG | - | chr1_4:914936-914955 | None:intergenic | 10.0% |
| !! | TAATGATATAAAATTATTTG+TGG | - | chr1_4:914937-914956 | None:intergenic | 10.0% |
| !! | TAATTCATTCATTATTCAAT+TGG | + | chr1_4:910367-910386 | Msa0142110:intron | 15.0% |
| !! | AATCTTATAAAATACAGAAA+TGG | + | chr1_4:910394-910413 | Msa0142110:intron | 15.0% |
| !! | GTATATAATCTTAAATTTCA+TGG | - | chr1_4:910742-910761 | None:intergenic | 15.0% |
| !! | TTAACTTTAACATGAAAAAT+AGG | - | chr1_4:910947-910966 | None:intergenic | 15.0% |
| !!! | GAATAATTTTAACCATTTAT+TGG | + | chr1_4:911562-911581 | Msa0142110:intron | 15.0% |
| !!! | CGATTTTATATTTACAATAT+TGG | + | chr1_4:912196-912215 | Msa0142110:intron | 15.0% |
| !!! | TTTTATATTTACAATATTGG+GGG | + | chr1_4:912199-912218 | Msa0142110:intron | 15.0% |
| !!! | ATATTTTTATAAAGCTATGA+TGG | - | chr1_4:913448-913467 | None:intergenic | 15.0% |
| !! | AAATTTCAAAAAAATAGGTA+TGG | - | chr1_4:914081-914100 | None:intergenic | 15.0% |
| !! | AATATCAACTCAAATTATAA+CGG | + | chr1_4:914284-914303 | Msa0142110:intron | 15.0% |
| !! | AGATTGAAGAAATTAATTTA+TGG | + | chr1_4:915152-915171 | Msa0142110:intron | 15.0% |
| !!! | TGTATATCTAAAATATTTCA+GGG | + | chr1_4:917031-917050 | Msa0142110:three_prime_UTR | 15.0% |
| !!! | AAGAAATCTAAGTTTTTCTA+TGG | - | chr1_4:909611-909630 | None:intergenic | 20.0% |
| !!! | TATTTTACCAATATACCAAT+TGG | + | chr1_4:909632-909651 | Msa0142110:five_prime_UTR | 20.0% |
| !!! | GATAAAAAAAATTACGGTTT+TGG | - | chr1_4:909846-909865 | None:intergenic | 20.0% |
| !! | GGTTTGGATAAAAAAAATTA+CGG | - | chr1_4:909852-909871 | None:intergenic | 20.0% |
| !! | GAAAAAACTTAATGAATGAT+TGG | - | chr1_4:909884-909903 | None:intergenic | 20.0% |
| !!! | TCAAATCGATTGATAATTTT+AGG | + | chr1_4:909911-909930 | Msa0142110:intron | 20.0% |
| !!! | CAAATCGATTGATAATTTTA+GGG | + | chr1_4:909912-909931 | Msa0142110:intron | 20.0% |
| !! | TCAAAACAAGTATTCTTTAT+GGG | + | chr1_4:910657-910676 | Msa0142110:intron | 20.0% |
| !!! | TTTTTAAATTTTCCTTCAAG+CGG | - | chr1_4:910809-910828 | None:intergenic | 20.0% |
| !!! | TTTGAAACAACTTGATAATT+TGG | - | chr1_4:911508-911527 | None:intergenic | 20.0% |
| !!! | TTGTTTATGAGATTTTGTAA+GGG | - | chr1_4:911618-911637 | None:intergenic | 20.0% |
| !!! | AATTATTTCTAATGTAGCTT+AGG | + | chr1_4:911663-911682 | Msa0142110:intron | 20.0% |
| !!! | ATTATTTCTAATGTAGCTTA+GGG | + | chr1_4:911664-911683 | Msa0142110:intron | 20.0% |
| !!! | TTTTTTGAGCTATAATCTTA+AGG | + | chr1_4:912039-912058 | Msa0142110:intron | 20.0% |
| !!! | TTTTTGAGCTATAATCTTAA+GGG | + | chr1_4:912040-912059 | Msa0142110:intron | 20.0% |
| !!! | TTCTGGTTTTGATTTTTTAA+TGG | - | chr1_4:913050-913069 | None:intergenic | 20.0% |
| !! | TTGATTTAGTATTGCTTAAT+AGG | + | chr1_4:913164-913183 | Msa0142110:intron | 20.0% |
| !!! | TCTTTTAATCGTTAATTTAC+AGG | + | chr1_4:913812-913831 | Msa0142110:intron | 20.0% |
| !! | TTGATTACATAATGCTAAAA+AGG | + | chr1_4:914335-914354 | Msa0142110:intron | 20.0% |
| !!! | ACTAAATAACATAATTTGCA+GGG | - | chr1_4:914371-914390 | None:intergenic | 20.0% |
| !! | TCTAAAAACCTTTCTATTAA+TGG | + | chr1_4:914418-914437 | Msa0142110:intron | 20.0% |
| !! | GTTTATTTCAGCTTATAAAA+TGG | - | chr1_4:915229-915248 | None:intergenic | 20.0% |
| !!! | CAATTTGATGTCATTTTATT+GGG | + | chr1_4:915429-915448 | Msa0142110:intron | 20.0% |
| !! | ATAATCTATTGATCTCATAT+TGG | - | chr1_4:915738-915757 | None:intergenic | 20.0% |
| !!! | AAGAAAAAGAAATTGCATTT+TGG | - | chr1_4:915769-915788 | None:intergenic | 20.0% |
| !! | AATCATAATTTCAGTTCTTA+AGG | + | chr1_4:915802-915821 | Msa0142110:intron | 20.0% |
| !! | AATAATTTAATGACTCAAAG+GGG | - | chr1_4:916388-916407 | None:intergenic | 20.0% |
| !! | CAATAATTTAATGACTCAAA+GGG | - | chr1_4:916389-916408 | None:intergenic | 20.0% |
| !! | ACAATAATTTAATGACTCAA+AGG | - | chr1_4:916390-916409 | None:intergenic | 20.0% |
| !! | TTTGAGTCATTAAATTATTG+TGG | + | chr1_4:916389-916408 | Msa0142110:intron | 20.0% |
| !! | TTGATTCAGTTGTAATTTAA+AGG | + | chr1_4:916833-916852 | Msa0142110:three_prime_UTR | 20.0% |
| !!! | GTGTATATCTAAAATATTTC+AGG | + | chr1_4:917030-917049 | Msa0142110:three_prime_UTR | 20.0% |
| !!! | AAGTTTTTCTATGGCTTTAT+AGG | - | chr1_4:909602-909621 | None:intergenic | 25.0% |
| !!! | AAAAAATTACGGTTTTGGAT+CGG | - | chr1_4:909841-909860 | None:intergenic | 25.0% |
| ! | AAACTTAATGAATGATTGGA+AGG | - | chr1_4:909880-909899 | None:intergenic | 25.0% |
| ! | TTGTTTCAAAATCTGAATTC+AGG | + | chr1_4:909950-909969 | Msa0142110:intron | 25.0% |
| ! | GTCAAAACAAGTATTCTTTA+TGG | + | chr1_4:910656-910675 | Msa0142110:intron | 25.0% |
| ! | ATAATTTCATAAATGTGCTG+TGG | - | chr1_4:910707-910726 | None:intergenic | 25.0% |
| ! | ATAACATTGTTGGATTCTAT+TGG | + | chr1_4:910828-910847 | Msa0142110:intron | 25.0% |
| ! | CATGTTAAAGTTAAAGTATG+TGG | + | chr1_4:910953-910972 | Msa0142110:intron | 25.0% |
| ! | AAGCAGTTTATTTATTCACA+AGG | + | chr1_4:910994-911013 | Msa0142110:intron | 25.0% |
| ! | AGCAATTCTGTTTATTCATA+CGG | + | chr1_4:911188-911207 | Msa0142110:intron | 25.0% |
| ! | ACAAGTTGTATATATAAGAG+TGG | + | chr1_4:911294-911313 | Msa0142110:intron | 25.0% |
| ! | TAAAATAAGTTTCACGTTGT+GGG | + | chr1_4:911481-911500 | Msa0142110:intron | 25.0% |
| !!! | ATTGAATTTTGTTGTAGCAA+AGG | + | chr1_4:911533-911552 | Msa0142110:intron | 25.0% |
| ! | ACATTACATCAACCAATAAA+TGG | - | chr1_4:911577-911596 | None:intergenic | 25.0% |
| !! | TTGGTTGATGTAATGTATTA+TGG | + | chr1_4:911581-911600 | Msa0142110:intron | 25.0% |
| ! | ATGTAATGTATTATGGCTAA+TGG | + | chr1_4:911588-911607 | Msa0142110:intron | 25.0% |
| !! | CTTGTTTATGAGATTTTGTA+AGG | - | chr1_4:911619-911638 | None:intergenic | 25.0% |
| ! | TAAACAAGCAATTATTGTTG+AGG | + | chr1_4:911631-911650 | Msa0142110:intron | 25.0% |
| ! | TTGATCCTGTTGTATATTAA+GGG | - | chr1_4:911808-911827 | None:intergenic | 25.0% |
| ! | ATTGATCCTGTTGTATATTA+AGG | - | chr1_4:911809-911828 | None:intergenic | 25.0% |
| !!! | ATGACCATATATTTTGTTGT+AGG | + | chr1_4:911842-911861 | Msa0142110:intron | 25.0% |
| ! | TCTACCTACAACAAAATATA+TGG | - | chr1_4:911849-911868 | None:intergenic | 25.0% |
| !!! | ATATTTTGTTGTAGGTAGAA+TGG | + | chr1_4:911850-911869 | Msa0142110:intron | 25.0% |
| !! | AAGTTATTGTTACTAGTTTG+CGG | + | chr1_4:912008-912027 | Msa0142110:intron | 25.0% |
| ! | ATATAAAATCGTAAGATGCT+AGG | - | chr1_4:912187-912206 | None:intergenic | 25.0% |
| ! | TCTTCAAATTAAGTCTATGT+TGG | - | chr1_4:912461-912480 | None:intergenic | 25.0% |
| !! | ATTGTATTAGAGGATAGTTT+TGG | - | chr1_4:912499-912518 | None:intergenic | 25.0% |
| ! | ATACAAAATCTTCCTCATTT+GGG | - | chr1_4:912561-912580 | None:intergenic | 25.0% |
| !! | TAGTAAAAGAAGTTGAGTTT+TGG | + | chr1_4:912755-912774 | Msa0142110:intron | 25.0% |
| !!! | CTGGTTTTGATTTTTTTGAT+TGG | + | chr1_4:912907-912926 | Msa0142110:intron | 25.0% |
| ! | ATTAACACCATCATGAAAAA+TGG | + | chr1_4:913004-913023 | Msa0142110:intron | 25.0% |
| !! | TTTTAATGGAGAGAGATTTT+TGG | - | chr1_4:913036-913055 | None:intergenic | 25.0% |
| !!! | GAGTATTTTTATCTGAATTC+TGG | - | chr1_4:913067-913086 | None:intergenic | 25.0% |
| ! | GATTCTCATGAATAAGATAT+AGG | + | chr1_4:913301-913320 | Msa0142110:intron | 25.0% |
| ! | AAGATATAGGTAGATTAATC+AGG | + | chr1_4:913314-913333 | Msa0142110:intron | 25.0% |
| ! | TTGAGGTAAAAACATGTATA+TGG | - | chr1_4:913509-913528 | None:intergenic | 25.0% |
| !! | TCATCATTGTTTTCTTATTC+AGG | + | chr1_4:913549-913568 | Msa0142110:intron | 25.0% |
| !! | TGCAGTCAAATTTAAAACAT+AGG | - | chr1_4:913667-913686 | None:intergenic | 25.0% |
| ! | CTCAAGCATTCATAAAAAAT+TGG | - | chr1_4:913846-913865 | None:intergenic | 25.0% |
| !! | CTTTATTTCTCAATTATGAC+AGG | + | chr1_4:913939-913958 | Msa0142110:intron | 25.0% |
| ! | ATTATAACGGTGAATAATGT+AGG | + | chr1_4:914297-914316 | Msa0142110:intron | 25.0% |
| ! | ATTATGTAATCAAGCTTCTA+TGG | - | chr1_4:914328-914347 | None:intergenic | 25.0% |
| !! | CTAAATAACATAATTTGCAG+GGG | - | chr1_4:914370-914389 | None:intergenic | 25.0% |
| !! | CACTAAATAACATAATTTGC+AGG | - | chr1_4:914372-914391 | None:intergenic | 25.0% |
| !! | AGGTGACACTTTTAATATAT+TGG | - | chr1_4:914482-914501 | None:intergenic | 25.0% |
| ! | AAAAGTAATACATGAAGTTG+TGG | - | chr1_4:914639-914658 | None:intergenic | 25.0% |
| ! | TGGATAGATAAATCAATCTA+TGG | - | chr1_4:914688-914707 | None:intergenic | 25.0% |
| !!! | ATAATTTCTTTTAAGGTGCT+GGG | - | chr1_4:914904-914923 | None:intergenic | 25.0% |
| !!! | AATAATTTCTTTTAAGGTGC+TGG | - | chr1_4:914905-914924 | None:intergenic | 25.0% |
| ! | TATTTAGCACCACATTAAAT+AGG | - | chr1_4:915093-915112 | None:intergenic | 25.0% |
| !! | TATTTAATGTGGTGCTAAAT+AGG | + | chr1_4:915092-915111 | Msa0142110:intron | 25.0% |
| !! | AATTAATTTATGGATTGTCG+TGG | + | chr1_4:915162-915181 | Msa0142110:intron | 25.0% |
| ! | AATGACAATAACATCCATAT+CGG | + | chr1_4:915332-915351 | Msa0142110:intron | 25.0% |
| ! | CCAATAAAATGACATCAAAT+TGG | - | chr1_4:915431-915450 | None:intergenic | 25.0% |
| !!! | CCAATTTGATGTCATTTTAT+TGG | + | chr1_4:915428-915447 | Msa0142110:intron | 25.0% |
| ! | GTCTTATCTTCATTATATGT+GGG | - | chr1_4:915467-915486 | None:intergenic | 25.0% |
| ! | TGCAAAGGTGAAAAATATTT+AGG | - | chr1_4:915893-915912 | None:intergenic | 25.0% |
| !! | GATCTCTTCTTCTTTTTATA+TGG | - | chr1_4:916168-916187 | None:intergenic | 25.0% |
| ! | AAAAAGAAGAAGAGATCTAT+AGG | + | chr1_4:916171-916190 | Msa0142110:intron | 25.0% |
| ! | ATTAAATTATTGTGGAGCAT+AGG | + | chr1_4:916397-916416 | Msa0142110:intron | 25.0% |
| ! | ATTGAATTCCTTGAAATTTG+CGG | + | chr1_4:916683-916702 | Msa0142110:CDS | 25.0% |
| !!! | GCAATAAAGAATCCTTTTTT+TGG | + | chr1_4:916800-916819 | Msa0142110:CDS | 25.0% |
| ! | AACTAAAGAACTCCAAAAAA+AGG | - | chr1_4:916815-916834 | None:intergenic | 25.0% |
| !!! | TGTTATTTTTCATAGCTTGA+AGG | + | chr1_4:916911-916930 | Msa0142110:three_prime_UTR | 25.0% |
| !!! | GTTATTTTTCATAGCTTGAA+GGG | + | chr1_4:916912-916931 | Msa0142110:three_prime_UTR | 25.0% |
| !!! | TTTAAGCTGTTTTTAAGCTT+TGG | + | chr1_4:916974-916993 | Msa0142110:three_prime_UTR | 25.0% |
| ! | AGTTTAAGCAAAATATTGAG+AGG | + | chr1_4:917008-917027 | Msa0142110:three_prime_UTR | 25.0% |
| !!! | ATTATTACCAAAGAGTACTT+TGG | + | chr1_4:917059-917078 | Msa0142110:three_prime_UTR | 25.0% |
| !!! | TTATTACCAAAGAGTACTTT+GGG | + | chr1_4:917060-917079 | Msa0142110:three_prime_UTR | 25.0% |
| ATGAATGATTGGAAGGTTTA+GGG | - | chr1_4:909873-909892 | None:intergenic | 30.0% | |
| AATGAATGATTGGAAGGTTT+AGG | - | chr1_4:909874-909893 | None:intergenic | 30.0% | |
| ! | TTTCTTCTTCCAATTAGCTT+AGG | + | chr1_4:910124-910143 | Msa0142110:intron | 30.0% |
| ! | TTCTTCTTCCAATTAGCTTA+GGG | + | chr1_4:910125-910144 | Msa0142110:intron | 30.0% |
| TTAGGGGTGATACTTATTTA+GGG | + | chr1_4:910142-910161 | Msa0142110:intron | 30.0% | |
| TCAAATAACTCAATCCAAAC+AGG | - | chr1_4:910168-910187 | None:intergenic | 30.0% | |
| ATAAGTTGTTTATCCAAACC+AGG | + | chr1_4:910328-910347 | Msa0142110:intron | 30.0% | |
| TGAATTAGATACACAGACTA+AGG | - | chr1_4:910354-910373 | None:intergenic | 30.0% | |
| GAATCTAATAATCCGGAATT+CGG | - | chr1_4:910622-910641 | None:intergenic | 30.0% | |
| TCAAAGCGAATCTAATAATC+CGG | - | chr1_4:910629-910648 | None:intergenic | 30.0% | |
| GATTATTAGATTCGCTTTGA+GGG | + | chr1_4:910629-910648 | Msa0142110:intron | 30.0% | |
| ! | ATTGATAATTAACGTGTGAC+CGG | + | chr1_4:910770-910789 | Msa0142110:intron | 30.0% |
| ! | ATTGTTGGATTCTATTGGTT+TGG | + | chr1_4:910833-910852 | Msa0142110:intron | 30.0% |
| !! | TTGTTGGATTCTATTGGTTT+GGG | + | chr1_4:910834-910853 | Msa0142110:intron | 30.0% |
| AAGTTAAAGTATGTGGATCT+AGG | + | chr1_4:910960-910979 | Msa0142110:intron | 30.0% | |
| AGAAACAAATGCCATTCTAA+AGG | + | chr1_4:911436-911455 | Msa0142110:CDS | 30.0% | |
| ! | ATACCTTAGTTCCTTTAGAA+TGG | - | chr1_4:911450-911469 | None:intergenic | 30.0% |
| GTAAAATAAGTTTCACGTTG+TGG | + | chr1_4:911480-911499 | Msa0142110:intron | 30.0% | |
| AAAATAAGTTTCACGTTGTG+GGG | + | chr1_4:911482-911501 | Msa0142110:intron | 30.0% | |
| !! | ATTTTGTTGTAGCAAAGGAT+TGG | + | chr1_4:911538-911557 | Msa0142110:intron | 30.0% |
| !! | TTTTGTTGTAGCAAAGGATT+GGG | + | chr1_4:911539-911558 | Msa0142110:intron | 30.0% |
| !!! | ATGTATCACACCTTGTTTTA+TGG | + | chr1_4:911717-911736 | Msa0142110:intron | 30.0% |
| ATATACAACAGGATCAATGA+TGG | + | chr1_4:911811-911830 | Msa0142110:intron | 30.0% | |
| GCAAACTAGTAACAATAACT+TGG | - | chr1_4:912009-912028 | None:intergenic | 30.0% | |
| GTGAAAAATATAGGGGAAAA+TGG | + | chr1_4:912346-912365 | Msa0142110:intron | 30.0% | |
| !!! | TATTAGAGGATAGTTTTGGA+GGG | - | chr1_4:912495-912514 | None:intergenic | 30.0% |
| TACAAAATCTTCCTCATTTG+GGG | - | chr1_4:912560-912579 | None:intergenic | 30.0% | |
| GATACAAAATCTTCCTCATT+TGG | - | chr1_4:912562-912581 | None:intergenic | 30.0% | |
| ACGAAATAAAGGACATTGAA+GGG | - | chr1_4:912616-912635 | None:intergenic | 30.0% | |
| ! | CAACTTCTTTTACTAGAAGA+AGG | - | chr1_4:912750-912769 | None:intergenic | 30.0% |
| TTTCAAACAAAGAATCGTGT+GGG | - | chr1_4:912819-912838 | None:intergenic | 30.0% | |
| ! | TTTTCAAACAAAGAATCGTG+TGG | - | chr1_4:912820-912839 | None:intergenic | 30.0% |
| GAGAATTGTTATCTGAATTC+TGG | + | chr1_4:912888-912907 | Msa0142110:intron | 30.0% | |
| GTTGGAACAAAAAAAAAGTG+TGG | - | chr1_4:912974-912993 | None:intergenic | 30.0% | |
| GTGTTAATGATCAAAAAGGT+TGG | - | chr1_4:912992-913011 | None:intergenic | 30.0% | |
| ! | GATGGTGTTAATGATCAAAA+AGG | - | chr1_4:912996-913015 | None:intergenic | 30.0% |
| !! | GTTTTCTCCATTTTTCATGA+TGG | - | chr1_4:913014-913033 | None:intergenic | 30.0% |
| ! | TCGTAAAAGTGTAAGCTATT+GGG | - | chr1_4:913125-913144 | None:intergenic | 30.0% |
| ! | TTCGTAAAAGTGTAAGCTAT+TGG | - | chr1_4:913126-913145 | None:intergenic | 30.0% |
| ! | GCTTACACTTTTACGAAAAT+TGG | + | chr1_4:913129-913148 | Msa0142110:intron | 30.0% |
| !! | ACTTTTACGAAAATTGGCTT+TGG | + | chr1_4:913135-913154 | Msa0142110:intron | 30.0% |
| !!! | CTTTTACGAAAATTGGCTTT+GGG | + | chr1_4:913136-913155 | Msa0142110:intron | 30.0% |
| ATATAGGTAGATTAATCAGG+TGG | + | chr1_4:913317-913336 | Msa0142110:intron | 30.0% | |
| TTCAAATGGAAGCTATGAAT+TGG | + | chr1_4:913345-913364 | Msa0142110:intron | 30.0% | |
| !! | AGCTATGATGGTCTTATATT+CGG | - | chr1_4:913436-913455 | None:intergenic | 30.0% |
| CATAGGATGTAAGAAAACAA+GGG | - | chr1_4:913650-913669 | None:intergenic | 30.0% | |
| ACATAGGATGTAAGAAAACA+AGG | - | chr1_4:913651-913670 | None:intergenic | 30.0% | |
| AGCATAATTCTATTGTAGCA+TGG | - | chr1_4:913690-913709 | None:intergenic | 30.0% | |
| ATCGTTAATTTACAGGACTT+CGG | + | chr1_4:913819-913838 | Msa0142110:intron | 30.0% | |
| GAGCAATTTCTTTAACAAGA+TGG | + | chr1_4:913872-913891 | Msa0142110:intron | 30.0% | |
| TATTTCTCAATTATGACAGG+CGG | + | chr1_4:913942-913961 | Msa0142110:intron | 30.0% | |
| ATAAAAAACACCACCATTTC+TGG | - | chr1_4:914057-914076 | None:intergenic | 30.0% | |
| GAAAATGTAAATGTACCTTG+TGG | - | chr1_4:914193-914212 | None:intergenic | 30.0% | |
| ! | AGGTACATTTACATTTTCAC+TGG | + | chr1_4:914195-914214 | Msa0142110:intron | 30.0% |
| ! | GGTACATTTACATTTTCACT+GGG | + | chr1_4:914196-914215 | Msa0142110:intron | 30.0% |
| AAGACAGACCATTAATAGAA+AGG | - | chr1_4:914429-914448 | None:intergenic | 30.0% | |
| CATGAAACGAAGTAAAAACA+AGG | - | chr1_4:914502-914521 | None:intergenic | 30.0% | |
| ! | ACTTTTATTCTTCTCGAAAG+AGG | + | chr1_4:914653-914672 | Msa0142110:intron | 30.0% |
| ATTTATCTATCCAAAGCATG+TGG | + | chr1_4:914695-914714 | Msa0142110:intron | 30.0% | |
| CAATTTAAGCACCCAATTTA+GGG | - | chr1_4:914820-914839 | None:intergenic | 30.0% | |
| TCAATTTAAGCACCCAATTT+AGG | - | chr1_4:914821-914840 | None:intergenic | 30.0% | |
| TGGGTGCTTATTAAGTATTA+CGG | - | chr1_4:914871-914890 | None:intergenic | 30.0% | |
| !! | TCTCTCTCTTCATTTTTCAT+GGG | - | chr1_4:915006-915025 | None:intergenic | 30.0% |
| ATGAAAAATGAAGAGAGAGA+GGG | + | chr1_4:915006-915025 | Msa0142110:intron | 30.0% | |
| CATTGTGGAGTATAATACAT+GGG | - | chr1_4:915064-915083 | None:intergenic | 30.0% | |
| CATGTATTATACTCCACAAT+GGG | + | chr1_4:915063-915082 | Msa0142110:intron | 30.0% | |
| ATGTATTATACTCCACAATG+GGG | + | chr1_4:915064-915083 | Msa0142110:intron | 30.0% | |
| ATTTCATGTTCCTATCCAAA+TGG | - | chr1_4:915362-915381 | None:intergenic | 30.0% | |
| ATGACATGACTAATTATGGA+AGG | - | chr1_4:915389-915408 | None:intergenic | 30.0% | |
| ACTGATGACATGACTAATTA+TGG | - | chr1_4:915393-915412 | None:intergenic | 30.0% | |
| !! | ATCAAATTGGTTCGTAAATG+AGG | - | chr1_4:915418-915437 | None:intergenic | 30.0% |
| ! | GGTCTTATCTTCATTATATG+TGG | - | chr1_4:915468-915487 | None:intergenic | 30.0% |
| CCAACTAATCTTTACAAAAC+CGG | - | chr1_4:915504-915523 | None:intergenic | 30.0% | |
| !! | CGGTTTTGTAAAGATTAGTT+GGG | + | chr1_4:915502-915521 | Msa0142110:intron | 30.0% |
| CTTTATTCTATGCAAGACTT+GGG | - | chr1_4:915547-915566 | None:intergenic | 30.0% | |
| TCTTTATTCTATGCAAGACT+TGG | - | chr1_4:915548-915567 | None:intergenic | 30.0% | |
| ACTCTTTGTAAACTCATTTC+AGG | - | chr1_4:915576-915595 | None:intergenic | 30.0% | |
| !! | ATACATTTGAAGTACCGATT+TGG | + | chr1_4:915656-915675 | Msa0142110:intron | 30.0% |
| ! | TTACATGTCTGCTTTATTCT+TGG | + | chr1_4:915916-915935 | Msa0142110:intron | 30.0% |
| CAAACTCTTCTAACTTATGT+GGG | + | chr1_4:915974-915993 | Msa0142110:CDS | 30.0% | |
| AAACTCTTCTAACTTATGTG+GGG | + | chr1_4:915975-915994 | Msa0142110:CDS | 30.0% | |
| !!! | AACTACTTTTTATCTTCCCT+AGG | - | chr1_4:916138-916157 | None:intergenic | 30.0% |
| AGTTTATAGAAGCAACTAAG+TGG | - | chr1_4:916280-916299 | None:intergenic | 30.0% | |
| ATGAGCATTATAACCAAGTT+TGG | + | chr1_4:916360-916379 | Msa0142110:intron | 30.0% | |
| TGAGCATTATAACCAAGTTT+GGG | + | chr1_4:916361-916380 | Msa0142110:intron | 30.0% | |
| GTATAATATTTGGGTCTATG+TGG | - | chr1_4:916439-916458 | None:intergenic | 30.0% | |
| AGACCCAAATATTATACCAT+CGG | + | chr1_4:916442-916461 | Msa0142110:intron | 30.0% | |
| TTGAATTCCTTGAAATTTGC+GGG | + | chr1_4:916684-916703 | Msa0142110:CDS | 30.0% | |
| !!! | TGAAGTTTTGTTTTTGCCTA+GGG | + | chr1_4:916727-916746 | Msa0142110:CDS | 30.0% |
| !!! | AAGGCTTGACAATTTTAGTT+TGG | + | chr1_4:916852-916871 | Msa0142110:three_prime_UTR | 30.0% |
| !! | TTCTATGGCTTTATAGGTGT+AGG | - | chr1_4:909596-909615 | None:intergenic | 35.0% |
| ! | TTCAGTGGATTCAGAGAAAT+TGG | - | chr1_4:909777-909796 | None:intergenic | 35.0% |
| AGCAAAGCCAATAAGTTTAG+AGG | + | chr1_4:910034-910053 | Msa0142110:CDS | 35.0% | |
| TTAGGAGCCTCTAAACTTAT+TGG | - | chr1_4:910044-910063 | None:intergenic | 35.0% | |
| ATAAGTTTAGAGGCTCCTAA+AGG | + | chr1_4:910044-910063 | Msa0142110:CDS | 35.0% | |
| TAAGTTTAGAGGCTCCTAAA+GGG | + | chr1_4:910045-910064 | Msa0142110:CDS | 35.0% | |
| ! | TCTTCTTCCAATTAGCTTAG+GGG | + | chr1_4:910126-910145 | Msa0142110:intron | 35.0% |
| CTTAGGGGTGATACTTATTT+AGG | + | chr1_4:910141-910160 | Msa0142110:intron | 35.0% | |
| ! | ATACTTATTTAGGGCCTGTT+TGG | + | chr1_4:910151-910170 | Msa0142110:intron | 35.0% |
| ! | AGCAGCTTTTTATCAACATC+AGG | - | chr1_4:910425-910444 | None:intergenic | 35.0% |
| ! | TGTTGATAAAAAGCTGCTTG+AGG | + | chr1_4:910427-910446 | Msa0142110:CDS | 35.0% |
| CTTGAGGAACTTGAATCAAT+GGG | + | chr1_4:910443-910462 | Msa0142110:CDS | 35.0% | |
| !!! | ATAAGGGCACTTCATTTTTC+TGG | + | chr1_4:910485-910504 | Msa0142110:CDS | 35.0% |
| ATCCCAGTTGAAACTATCTT+TGG | + | chr1_4:910574-910593 | Msa0142110:intron | 35.0% | |
| TCCCAGTTGAAACTATCTTT+GGG | + | chr1_4:910575-910594 | Msa0142110:intron | 35.0% | |
| TAATAATCCGGAATTCGGTA+GGG | - | chr1_4:910617-910636 | None:intergenic | 35.0% | |
| GGATTATTAGATTCGCTTTG+AGG | + | chr1_4:910628-910647 | Msa0142110:intron | 35.0% | |
| TCTTTATGGGTTTGCATTAC+CGG | + | chr1_4:910670-910689 | Msa0142110:intron | 35.0% | |
| ! | TTGATAATTAACGTGTGACC+GGG | + | chr1_4:910771-910790 | Msa0142110:intron | 35.0% |
| ! | TTGCGAAGAACAAAGTATCA+AGG | + | chr1_4:910863-910882 | Msa0142110:intron | 35.0% |
| GTTCTCTAGATACTGAACTT+AGG | + | chr1_4:911068-911087 | Msa0142110:intron | 35.0% | |
| ! | CTTAGGCTTCTCTCTTTTAT+AGG | + | chr1_4:911085-911104 | Msa0142110:intron | 35.0% |
| AAACAGAATTGCTGTACCAA+GGG | - | chr1_4:911181-911200 | None:intergenic | 35.0% | |
| TAAACAGAATTGCTGTACCA+AGG | - | chr1_4:911182-911201 | None:intergenic | 35.0% | |
| AGATACCTGAGTGAATGATA+AGG | - | chr1_4:911372-911391 | None:intergenic | 35.0% | |
| !! | AGAAGCTTTAGCTTTACTGA+CGG | - | chr1_4:911396-911415 | None:intergenic | 35.0% |
| !! | ATTTGTTTCTTCTGGGGTAA+GGG | - | chr1_4:911426-911445 | None:intergenic | 35.0% |
| ! | AATGGCATTTGTTTCTTCTG+GGG | - | chr1_4:911432-911451 | None:intergenic | 35.0% |
| ! | GAATGGCATTTGTTTCTTCT+GGG | - | chr1_4:911433-911452 | None:intergenic | 35.0% |
| ! | AGAATGGCATTTGTTTCTTC+TGG | - | chr1_4:911434-911453 | None:intergenic | 35.0% |
| ! | ATGCCATTCTAAAGGAACTA+AGG | + | chr1_4:911444-911463 | Msa0142110:CDS | 35.0% |
| ! | TTTGTTGTAGCAAAGGATTG+GGG | + | chr1_4:911540-911559 | Msa0142110:intron | 35.0% |
| ! | CAATTATTGTTGAGGCATTC+TGG | + | chr1_4:911639-911658 | Msa0142110:intron | 35.0% |
| !!! | ATCACACCTTGTTTTATGGA+TGG | + | chr1_4:911721-911740 | Msa0142110:intron | 35.0% |
| CAAAGACCATCCATAAAACA+AGG | - | chr1_4:911730-911749 | None:intergenic | 35.0% | |
| GTGTTCTTTATCATTGCATG+CGG | + | chr1_4:911770-911789 | Msa0142110:intron | 35.0% | |
| TGTTCTTTATCATTGCATGC+GGG | + | chr1_4:911771-911790 | Msa0142110:intron | 35.0% | |
| ACATGCCCTTAATATACAAC+AGG | + | chr1_4:911800-911819 | Msa0142110:intron | 35.0% | |
| AGCTATAATCTTAAGGGAGA+AGG | + | chr1_4:912046-912065 | Msa0142110:intron | 35.0% | |
| AGAAGAAGAAGAGAAGAGAA+TGG | + | chr1_4:912082-912101 | Msa0142110:CDS | 35.0% | |
| AATGGAGAGAGAAAGAGAAA+AGG | + | chr1_4:912100-912119 | Msa0142110:CDS | 35.0% | |
| TGAAACTCAATGAGATGAGT+GGG | - | chr1_4:912152-912171 | None:intergenic | 35.0% | |
| CGTCTATGAGTTTATGCTTT+GGG | + | chr1_4:912261-912280 | Msa0142110:intron | 35.0% | |
| GTCTATGAGTTTATGCTTTG+GGG | + | chr1_4:912262-912281 | Msa0142110:intron | 35.0% | |
| TTTGGGGATAGTTGATCTTA+AGG | + | chr1_4:912278-912297 | Msa0142110:intron | 35.0% | |
| !! | TAAGGCTTTGTTTGAGAGTT+CGG | + | chr1_4:912296-912315 | Msa0142110:intron | 35.0% |
| ! | CTTTGGGGGTGAAAAATATA+GGG | + | chr1_4:912338-912357 | Msa0142110:intron | 35.0% |
| TTTGGGGGTGAAAAATATAG+GGG | + | chr1_4:912339-912358 | Msa0142110:intron | 35.0% | |
| !!! | GTATTAGAGGATAGTTTTGG+AGG | - | chr1_4:912496-912515 | None:intergenic | 35.0% |
| !!! | TTTTTTAGTTCCCCCAAATG+AGG | + | chr1_4:912546-912565 | Msa0142110:intron | 35.0% |
| ACAAAATCTTCCTCATTTGG+GGG | - | chr1_4:912559-912578 | None:intergenic | 35.0% | |
| CGAAATAAAGGACATTGAAG+GGG | - | chr1_4:912615-912634 | None:intergenic | 35.0% | |
| GACGAAATAAAGGACATTGA+AGG | - | chr1_4:912617-912636 | None:intergenic | 35.0% | |
| !! | AAAGAAGTTGAGTTTTGGCA+CGG | + | chr1_4:912760-912779 | Msa0142110:intron | 35.0% |
| GTATTGCTTAATAGGTAGTC+AGG | + | chr1_4:913172-913191 | Msa0142110:intron | 35.0% | |
| GTCAGGTAGATAAGTTCAAA+TGG | + | chr1_4:913189-913208 | Msa0142110:intron | 35.0% | |
| !! | CAAATGGAAGCGCTATAAAT+TGG | + | chr1_4:913205-913224 | Msa0142110:intron | 35.0% |
| ATCAGGTGGATAAGTTCAAA+TGG | + | chr1_4:913331-913350 | Msa0142110:intron | 35.0% | |
| !! | TATGATGGTCTTATATTCGG+GGG | - | chr1_4:913433-913452 | None:intergenic | 35.0% |
| !! | CTATGATGGTCTTATATTCG+GGG | - | chr1_4:913434-913453 | None:intergenic | 35.0% |
| !! | GCTATGATGGTCTTATATTC+GGG | - | chr1_4:913435-913454 | None:intergenic | 35.0% |
| GAATGACTTCTCAGATATTG+AGG | - | chr1_4:913526-913545 | None:intergenic | 35.0% | |
| AAGAAGACAACGAGAGAAAA+CGG | + | chr1_4:913617-913636 | Msa0142110:CDS | 35.0% | |
| ! | AGAATTATGCTTCCTTTTGC+AGG | + | chr1_4:913699-913718 | Msa0142110:intron | 35.0% |
| AGAGAGAATCAAGCAAAAGT+TGG | + | chr1_4:913769-913788 | Msa0142110:CDS | 35.0% | |
| AACAAATTGACGACTGTCAT+TGG | + | chr1_4:913898-913917 | Msa0142110:intron | 35.0% | |
| ACAAATTGACGACTGTCATT+GGG | + | chr1_4:913899-913918 | Msa0142110:intron | 35.0% | |
| AAGAAGACGAAAACTTGGAT+TGG | + | chr1_4:913966-913985 | Msa0142110:CDS | 35.0% | |
| GGTATTATCTTGTCCAGAAA+TGG | + | chr1_4:914041-914060 | Msa0142110:intron | 35.0% | |
| ATTATCTTGTCCAGAAATGG+TGG | + | chr1_4:914044-914063 | Msa0142110:intron | 35.0% | |
| ! | ACATTTACATTTTCACTGGG+TGG | + | chr1_4:914199-914218 | Msa0142110:intron | 35.0% |
| ! | CATTTACATTTTCACTGGGT+GGG | + | chr1_4:914200-914219 | Msa0142110:intron | 35.0% |
| ATAACGGTGAATAATGTAGG+AGG | + | chr1_4:914300-914319 | Msa0142110:intron | 35.0% | |
| TTACGGTAAAATGAGTGATG+TGG | - | chr1_4:914854-914873 | None:intergenic | 35.0% | |
| !! | CTCTCTCTCTTCATTTTTCA+TGG | - | chr1_4:915007-915026 | None:intergenic | 35.0% |
| CATGAAAAATGAAGAGAGAG+AGG | + | chr1_4:915005-915024 | Msa0142110:intron | 35.0% | |
| GTATAATACATGGGTGGTTA+TGG | - | chr1_4:915055-915074 | None:intergenic | 35.0% | |
| CCATTGTGGAGTATAATACA+TGG | - | chr1_4:915065-915084 | None:intergenic | 35.0% | |
| CCATGTATTATACTCCACAA+TGG | + | chr1_4:915062-915081 | Msa0142110:intron | 35.0% | |
| TGTATTATACTCCACAATGG+GGG | + | chr1_4:915065-915084 | Msa0142110:intron | 35.0% | |
| TCTTCATTATATGTGGGACT+TGG | - | chr1_4:915461-915480 | None:intergenic | 35.0% | |
| CTAATCTTTACAAAACCGGT+TGG | - | chr1_4:915500-915519 | None:intergenic | 35.0% | |
| !! | CCGGTTTTGTAAAGATTAGT+TGG | + | chr1_4:915501-915520 | Msa0142110:intron | 35.0% |
| GCAGACATGTAAATATGCAA+AGG | - | chr1_4:915908-915927 | None:intergenic | 35.0% | |
| CCACATAAGTTAGAAGAGTT+TGG | - | chr1_4:915976-915995 | None:intergenic | 35.0% | |
| CCAAACTCTTCTAACTTATG+TGG | + | chr1_4:915973-915992 | Msa0142110:CDS | 35.0% | |
| ! | TTTTTCTTCAGCAGGATTTC+TGG | - | chr1_4:916008-916027 | None:intergenic | 35.0% |
| ATCCTGCTGAAGAAAAATTC+AGG | + | chr1_4:916011-916030 | Msa0142110:CDS | 35.0% | |
| ! | TTCCTGAATTTTTCTTCAGC+AGG | - | chr1_4:916016-916035 | None:intergenic | 35.0% |
| GGTAAGAAAATCCGTTAAGA+TGG | + | chr1_4:916063-916082 | Msa0142110:intron | 35.0% | |
| ! | CTTTGTACTTTGGCATTTTC+AGG | + | chr1_4:916090-916109 | Msa0142110:intron | 35.0% |
| AGTGTAGCTACTAATACCTA+GGG | + | chr1_4:916119-916138 | Msa0142110:intron | 35.0% | |
| !! | CCGAATTTCAGAGTTTTGAT+CGG | - | chr1_4:916339-916358 | None:intergenic | 35.0% |
| !! | CCGATCAAAACTCTGAAATT+CGG | + | chr1_4:916336-916355 | Msa0142110:intron | 35.0% |
| !! | CGATCAAAACTCTGAAATTC+GGG | + | chr1_4:916337-916356 | Msa0142110:intron | 35.0% |
| AATATTTGGGTCTATGTGGT+GGG | - | chr1_4:916435-916454 | None:intergenic | 35.0% | |
| TAATATTTGGGTCTATGTGG+TGG | - | chr1_4:916436-916455 | None:intergenic | 35.0% | |
| GACCCAAATATTATACCATC+GGG | + | chr1_4:916443-916462 | Msa0142110:intron | 35.0% | |
| CACCCGATGGTATAATATTT+GGG | - | chr1_4:916448-916467 | None:intergenic | 35.0% | |
| ACACCCGATGGTATAATATT+TGG | - | chr1_4:916449-916468 | None:intergenic | 35.0% | |
| GTGCATATGATGTGTTTAAC+AGG | + | chr1_4:916634-916653 | Msa0142110:intron | 35.0% | |
| TGTGTTTAACAGGAAAGAGT+TGG | + | chr1_4:916644-916663 | Msa0142110:intron | 35.0% | |
| !!! | GTGAAGTTTTGTTTTTGCCT+AGG | + | chr1_4:916726-916745 | Msa0142110:CDS | 35.0% |
| ! | GGCTTTATAGGTGTAGGTAA+GGG | - | chr1_4:909590-909609 | None:intergenic | 40.0% |
| !! | TGGCTTTATAGGTGTAGGTA+AGG | - | chr1_4:909591-909610 | None:intergenic | 40.0% |
| GGTGGATCCAATTGGTATAT+TGG | - | chr1_4:909642-909661 | None:intergenic | 40.0% | |
| TTGCGGTACTCTCTTGAAAT+CGG | + | chr1_4:909712-909731 | Msa0142110:CDS | 40.0% | |
| TTCAGAGAAATTGGAGTGTG+AGG | - | chr1_4:909768-909787 | None:intergenic | 40.0% | |
| ! | TGATTGGAAGGTTTAGGGTT+TGG | - | chr1_4:909868-909887 | None:intergenic | 40.0% |
| GATTTACACACCAAGAGAAC+TGG | + | chr1_4:909978-909997 | Msa0142110:CDS | 40.0% | |
| !! | ACTTATTGGCTTTGCTGCTT+CGG | - | chr1_4:910030-910049 | None:intergenic | 40.0% |
| TGGGATTCTGAATTCCCTTT+AGG | - | chr1_4:910062-910081 | None:intergenic | 40.0% | |
| GGAACTAGTGATCAGAATGA+AGG | + | chr1_4:910089-910108 | Msa0142110:CDS | 40.0% | |
| AGTATCACCCCTAAGCTAAT+TGG | - | chr1_4:910136-910155 | None:intergenic | 40.0% | |
| GCTTGAGGAACTTGAATCAA+TGG | + | chr1_4:910442-910461 | Msa0142110:CDS | 40.0% | |
| ! | AATGAAGTGCCCTTATTGCA+CGG | - | chr1_4:910481-910500 | None:intergenic | 40.0% |
| GCCCAAAGATAGTTTCAACT+GGG | - | chr1_4:910579-910598 | None:intergenic | 40.0% | |
| TGCCCAAAGATAGTTTCAAC+TGG | - | chr1_4:910580-910599 | None:intergenic | 40.0% | |
| CTAATAATCCGGAATTCGGT+AGG | - | chr1_4:910618-910637 | None:intergenic | 40.0% | |
| CATCAGTTTATACCGCTTGA+AGG | + | chr1_4:910794-910813 | Msa0142110:intron | 40.0% | |
| !! | TGGATTCTATTGGTTTGGGT+TGG | + | chr1_4:910838-910857 | Msa0142110:intron | 40.0% |
| !! | GGATTCTATTGGTTTGGGTT+GGG | + | chr1_4:910839-910858 | Msa0142110:intron | 40.0% |
| !! | AAGGGCATTTCATCTATGTC+AGG | - | chr1_4:911163-911182 | None:intergenic | 40.0% |
| TGACATAGATGAAATGCCCT+TGG | + | chr1_4:911162-911181 | Msa0142110:CDS | 40.0% | |
| ATGATAAGGTCAGAAGGTAG+AGG | - | chr1_4:911358-911377 | None:intergenic | 40.0% | |
| GAGTGAATGATAAGGTCAGA+AGG | - | chr1_4:911364-911383 | None:intergenic | 40.0% | |
| TCTGACCTTATCATTCACTC+AGG | + | chr1_4:911364-911383 | Msa0142110:intron | 40.0% | |
| !! | CATTTGTTTCTTCTGGGGTA+AGG | - | chr1_4:911427-911446 | None:intergenic | 40.0% |
| ! | ACGCAAGCATGTGTTATTGT+AGG | - | chr1_4:911946-911965 | None:intergenic | 40.0% |
| TGAGATGAGTGGGAAACAAA+GGG | - | chr1_4:912142-912161 | None:intergenic | 40.0% | |
| ATGAGATGAGTGGGAAACAA+AGG | - | chr1_4:912143-912162 | None:intergenic | 40.0% | |
| CTGAAACTCAATGAGATGAG+TGG | - | chr1_4:912153-912172 | None:intergenic | 40.0% | |
| AAGCATAAACTCATAGACGC+AGG | - | chr1_4:912260-912279 | None:intergenic | 40.0% | |
| GCGTCTATGAGTTTATGCTT+TGG | + | chr1_4:912260-912279 | Msa0142110:intron | 40.0% | |
| !! | GCTTTGGGGGTGAAAAATAT+AGG | + | chr1_4:912337-912356 | Msa0142110:intron | 40.0% |
| ACATTGAAGGGGAGAACTTT+GGG | - | chr1_4:912604-912623 | None:intergenic | 40.0% | |
| GAAGCAAGTGGACGAAATAA+AGG | - | chr1_4:912627-912646 | None:intergenic | 40.0% | |
| TTTGCGAGTTCAAAGGGTAA+GGG | - | chr1_4:912675-912694 | None:intergenic | 40.0% | |
| !! | GCTTTGTTTGCGAGTTCAAA+GGG | - | chr1_4:912681-912700 | None:intergenic | 40.0% |
| ACAAGTACCAAGCTCTTAAC+TGG | - | chr1_4:912722-912741 | None:intergenic | 40.0% | |
| !! | AGTTTTGGCACGGTATATTG+AGG | + | chr1_4:912770-912789 | Msa0142110:intron | 40.0% |
| ! | ATATGCGAGTATCGCTTACT+AGG | + | chr1_4:912861-912880 | Msa0142110:intron | 40.0% |
| !! | CTGCGAGAGTATTGTTGAAT+AGG | - | chr1_4:913096-913115 | None:intergenic | 40.0% |
| ATTCATGAGAATCACGACGT+GGG | - | chr1_4:913294-913313 | None:intergenic | 40.0% | |
| TATTCATGAGAATCACGACG+TGG | - | chr1_4:913295-913314 | None:intergenic | 40.0% | |
| ATTCAGGAGAGAATTCGAGT+CGG | + | chr1_4:913565-913584 | Msa0142110:intron | 40.0% | |
| CAAAGCTAACAACCTGCAAA+AGG | - | chr1_4:913714-913733 | None:intergenic | 40.0% | |
| !! | TTTGCAGGTTGTTAGCTTTG+AGG | + | chr1_4:913714-913733 | Msa0142110:intron | 40.0% |
| TTTGAGGAAAGCAGAGAAAG+AGG | + | chr1_4:913730-913749 | Msa0142110:CDS | 40.0% | |
| GCAAAAGTTGGAAGAAGACA+AGG | + | chr1_4:913781-913800 | Msa0142110:CDS | 40.0% | |
| CAAATTGACGACTGTCATTG+GGG | + | chr1_4:913900-913919 | Msa0142110:intron | 40.0% | |
| AAATTGACGACTGTCATTGG+GGG | + | chr1_4:913901-913920 | Msa0142110:intron | 40.0% | |
| AGCTGTTGTAGAGGAGAAAA+AGG | + | chr1_4:914020-914039 | Msa0142110:CDS | 40.0% | |
| GAAATATGAGAAGAGGGAGA+CGG | + | chr1_4:914551-914570 | Msa0142110:intron | 40.0% | |
| ATAGGCCTGAGTAATAACGA+CGG | + | chr1_4:914578-914597 | Msa0142110:intron | 40.0% | |
| CAGAAGAAAACCACATGCTT+TGG | - | chr1_4:914708-914727 | None:intergenic | 40.0% | |
| ! | CAAAGCATGTGGTTTTCTTC+TGG | + | chr1_4:914706-914725 | Msa0142110:intron | 40.0% |
| !! | ATGTGGTTTTCTTCTGGAGA+TGG | + | chr1_4:914712-914731 | Msa0142110:intron | 40.0% |
| ! | ACAACAGAGCACCCTAAATT+GGG | + | chr1_4:914806-914825 | Msa0142110:intron | 40.0% |
| !!! | TTTCTTTTAAGGTGCTGGGT+TGG | - | chr1_4:914900-914919 | None:intergenic | 40.0% |
| TGTGGAGTATAATACATGGG+TGG | - | chr1_4:915061-915080 | None:intergenic | 40.0% | |
| TCAACGCACTAGCTGTAAAT+TGG | - | chr1_4:915258-915277 | None:intergenic | 40.0% | |
| TCATGTTCCTATCCAAATGG+AGG | - | chr1_4:915359-915378 | None:intergenic | 40.0% | |
| !! | AAAACCGGTTGGTAAAGTGA+GGG | - | chr1_4:915489-915508 | None:intergenic | 40.0% |
| CTAACTCATCCTCACAAAAC+CGG | - | chr1_4:915618-915637 | None:intergenic | 40.0% | |
| !! | CATTTGAAGTACCGATTTGG+TGG | + | chr1_4:915659-915678 | Msa0142110:intron | 40.0% |
| GGAATGATTTGACGTCACAT+AGG | + | chr1_4:915701-915720 | Msa0142110:intron | 40.0% | |
| GAAAAGCTGCGTTACTAAGA+CGG | - | chr1_4:916042-916061 | None:intergenic | 40.0% | |
| ! | TCTTAGTAACGCAGCTTTTC+AGG | + | chr1_4:916042-916061 | Msa0142110:CDS | 40.0% |
| CAGTGTAGCTACTAATACCT+AGG | + | chr1_4:916118-916137 | Msa0142110:intron | 40.0% | |
| GAAGAGATCTATAGGCTGTT+TGG | + | chr1_4:916179-916198 | Msa0142110:intron | 40.0% | |
| !! | TTCAGAGTTTTGATCGGACT+GGG | - | chr1_4:916333-916352 | None:intergenic | 40.0% |
| !! | TTTCAGAGTTTTGATCGGAC+TGG | - | chr1_4:916334-916353 | None:intergenic | 40.0% |
| ! | TTCTCGTCTAAAGCTACATC+AGG | + | chr1_4:916539-916558 | Msa0142110:intron | 40.0% |
| ! | TCTCGTCTAAAGCTACATCA+GGG | + | chr1_4:916540-916559 | Msa0142110:intron | 40.0% |
| !! | GAAAGAGTTGGTGCTTTGAA+AGG | + | chr1_4:916656-916675 | Msa0142110:CDS | 40.0% |
| TCTCAAACCCGCAAATTTCA+AGG | - | chr1_4:916694-916713 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTTGCCTAGGGAGA+AGG | + | chr1_4:916733-916752 | Msa0142110:CDS | 40.0% |
| ATTGCAGTCCTAAATTCAGC+TGG | + | chr1_4:916761-916780 | Msa0142110:CDS | 40.0% | |
| GTTCAGATCCAGCTGAATTT+AGG | - | chr1_4:916772-916791 | None:intergenic | 40.0% | |
| !!! | CCTTGTGTCGTTACTTTTTG+CGG | + | chr1_4:916951-916970 | Msa0142110:three_prime_UTR | 40.0% |
| ATTCCGGTGATTCGTTTCGT+CGG | - | chr1_4:909663-909682 | None:intergenic | 45.0% | |
| CGAAACGAATCACCGGAATA+TGG | + | chr1_4:909664-909683 | Msa0142110:exon | 45.0% | |
| !!! | ATTACGGTTTTGGATCGGCA+AGG | - | chr1_4:909836-909855 | None:intergenic | 45.0% |
| TTCAGTGTGTCCAGTTCTCT+TGG | - | chr1_4:909991-910010 | None:intergenic | 45.0% | |
| AGGGAATTCAGAATCCCAAG+AGG | + | chr1_4:910064-910083 | Msa0142110:CDS | 45.0% | |
| GGGAATTCAGAATCCCAAGA+GGG | + | chr1_4:910065-910084 | Msa0142110:CDS | 45.0% | |
| AATTCAGAATCCCAAGAGGG+TGG | + | chr1_4:910068-910087 | Msa0142110:CDS | 45.0% | |
| ATCACTAGTTCCACCCTCTT+GGG | - | chr1_4:910081-910100 | None:intergenic | 45.0% | |
| TAGATACACAGACTAAGGCC+TGG | - | chr1_4:910349-910368 | None:intergenic | 45.0% | |
| TTTCAACAGCCCGTGCAATA+AGG | + | chr1_4:910468-910487 | Msa0142110:CDS | 45.0% | |
| TTCAACAGCCCGTGCAATAA+GGG | + | chr1_4:910469-910488 | Msa0142110:CDS | 45.0% | |
| ! | ATGAAGTGCCCTTATTGCAC+GGG | - | chr1_4:910480-910499 | None:intergenic | 45.0% |
| AAGCGGTATAAACTGATGCC+CGG | - | chr1_4:910792-910811 | None:intergenic | 45.0% | |
| ! | TATAGGTAACACTAGCCTCG+AGG | + | chr1_4:911102-911121 | Msa0142110:intron | 45.0% |
| ACATGTACTGCGAATGACTG+AGG | - | chr1_4:911910-911929 | None:intergenic | 45.0% | |
| AACAAAGTGTACGCACATGC+TGG | - | chr1_4:912225-912244 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGAGAGTTCGGA+GGG | + | chr1_4:912300-912319 | Msa0142110:intron | 45.0% |
| ! | CTTTGTTTGAGAGTTCGGAG+GGG | + | chr1_4:912301-912320 | Msa0142110:intron | 45.0% |
| CATTGAAGGGGAGAACTTTG+GGG | - | chr1_4:912603-912622 | None:intergenic | 45.0% | |
| GACATTGAAGGGGAGAACTT+TGG | - | chr1_4:912605-912624 | None:intergenic | 45.0% | |
| GGGAAAAAGGAAGAAGCAAG+TGG | - | chr1_4:912639-912658 | None:intergenic | 45.0% | |
| !!! | AAGGGAGGGTTTTGGGAAAA+AGG | - | chr1_4:912652-912671 | None:intergenic | 45.0% |
| GAGTTCAAAGGGTAAGGGAA+GGG | - | chr1_4:912670-912689 | None:intergenic | 45.0% | |
| GTTTGCGAGTTCAAAGGGTA+AGG | - | chr1_4:912676-912695 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTTGCGAGTTCAA+AGG | - | chr1_4:912682-912701 | None:intergenic | 45.0% |
| GTGGGGAGATTTCTCTATGT+AGG | - | chr1_4:913401-913420 | None:intergenic | 45.0% | |
| ATTCGGGGGAATCATGATGT+GGG | - | chr1_4:913419-913438 | None:intergenic | 45.0% | |
| TATTCGGGGGAATCATGATG+TGG | - | chr1_4:913420-913439 | None:intergenic | 45.0% | |
| AGGAGTTGCTTGAAGCAAAG+AGG | + | chr1_4:913590-913609 | Msa0142110:CDS | 45.0% | |
| AGAGAAAGAGGAAGAGCGAA+GGG | + | chr1_4:913742-913761 | Msa0142110:CDS | 45.0% | |
| GCGGAAAGAAGACGAAAACT+TGG | + | chr1_4:913961-913980 | Msa0142110:CDS | 45.0% | |
| !! | AAAACTTGGATTGGCTCCAG+AGG | + | chr1_4:913975-913994 | Msa0142110:CDS | 45.0% |
| TGCAGAGTTTCCTGCCAATT+AGG | + | chr1_4:914114-914133 | Msa0142110:intron | 45.0% | |
| TTCTCTCAAGCAGAACCACA+AGG | + | chr1_4:914175-914194 | Msa0142110:CDS | 45.0% | |
| TCATCTGCCTAGTTCAGTGT+AGG | + | chr1_4:914233-914252 | Msa0142110:intron | 45.0% | |
| TCACTTGCCTACACTGAACT+AGG | - | chr1_4:914243-914262 | None:intergenic | 45.0% | |
| ! | AAGTGCCGTCGTTATTACTC+AGG | - | chr1_4:914586-914605 | None:intergenic | 45.0% |
| ! | GTGGATGGTCTTAGCTAACT+AGG | - | chr1_4:914788-914807 | None:intergenic | 45.0% |
| ! | CAATTTAGGGTGCTCTGTTG+TGG | - | chr1_4:914807-914826 | None:intergenic | 45.0% |
| ! | CACAACAGAGCACCCTAAAT+TGG | + | chr1_4:914805-914824 | Msa0142110:intron | 45.0% |
| ACATGGGTGGTTATGGAGAA+GGG | - | chr1_4:915048-915067 | None:intergenic | 45.0% | |
| TACATGGGTGGTTATGGAGA+AGG | - | chr1_4:915049-915068 | None:intergenic | 45.0% | |
| TTAAATAGGCACCCCCATTG+TGG | - | chr1_4:915079-915098 | None:intergenic | 45.0% | |
| !! | ATGGGGGTGCCTATTTAATG+TGG | + | chr1_4:915081-915100 | Msa0142110:intron | 45.0% |
| ATCCATATCGGTCCTCCATT+TGG | + | chr1_4:915344-915363 | Msa0142110:intron | 45.0% | |
| ATCCAAATGGAGGACCGATA+TGG | - | chr1_4:915349-915368 | None:intergenic | 45.0% | |
| TATCGGTCCTCCATTTGGAT+AGG | + | chr1_4:915349-915368 | Msa0142110:intron | 45.0% | |
| AAGACCCTCACTTTACCAAC+CGG | + | chr1_4:915482-915501 | Msa0142110:intron | 45.0% | |
| !! | CAAAACCGGTTGGTAAAGTG+AGG | - | chr1_4:915490-915509 | None:intergenic | 45.0% |
| ! | GATTAGTTGGGCGTGAGTAT+TGG | + | chr1_4:915514-915533 | Msa0142110:intron | 45.0% |
| !! | AAAACCGGCTTGCAAAATGG+AGG | - | chr1_4:915603-915622 | None:intergenic | 45.0% |
| !! | CACAAAACCGGCTTGCAAAA+TGG | - | chr1_4:915606-915625 | None:intergenic | 45.0% |
| !! | TTTTGCAAGCCGGTTTTGTG+AGG | + | chr1_4:915606-915625 | Msa0142110:intron | 45.0% |
| GGCAGCGAATGTGACATTTA+TGG | + | chr1_4:915680-915699 | Msa0142110:intron | 45.0% | |
| ! | GTCTGCTTTATTCTTGGAGC+AGG | + | chr1_4:915922-915941 | Msa0142110:intron | 45.0% |
| TTGGAATGCTCTCTTCACTC+TGG | - | chr1_4:915957-915976 | None:intergenic | 45.0% | |
| TACAAAGCGCGCCATCTTAA+CGG | - | chr1_4:916077-916096 | None:intergenic | 45.0% | |
| TCTCAAACTCACGTCTAGAG+TGG | + | chr1_4:916216-916235 | Msa0142110:intron | 45.0% | |
| ! | TTGATCGGACTGGGTATGTA+GGG | - | chr1_4:916324-916343 | None:intergenic | 45.0% |
| ! | TTTGATCGGACTGGGTATGT+AGG | - | chr1_4:916325-916344 | None:intergenic | 45.0% |
| CATCGGGTGTATCAGTTTCA+GGG | + | chr1_4:916459-916478 | Msa0142110:intron | 45.0% | |
| ATCGGGTGTATCAGTTTCAG+GGG | + | chr1_4:916460-916479 | Msa0142110:intron | 45.0% | |
| !! | AGAGTTGGTGCTTTGAAAGG+AGG | + | chr1_4:916659-916678 | Msa0142110:CDS | 45.0% |
| GCAATATCAACCTTCTCCCT+AGG | - | chr1_4:916746-916765 | None:intergenic | 45.0% | |
| CCGCAAAAAGTAACGACACA+AGG | - | chr1_4:916954-916973 | None:intergenic | 45.0% | |
| ! | GAGCTTCCCAAAGTACTCTT+TGG | - | chr1_4:917069-917088 | None:intergenic | 45.0% |
| !!! | TTTTATTAAGATTTATTAAA+TGG | + | chr1_4:914978-914997 | Msa0142110:intron | 5.0% |
| !! | TTTATTAAGATTTATTAAAT+GGG | + | chr1_4:914979-914998 | Msa0142110:intron | 5.0% |
| GGTGTAGGTAAGGGTGAGAA+GGG | - | chr1_4:909581-909600 | None:intergenic | 50.0% | |
| AGGTGTAGGTAAGGGTGAGA+AGG | - | chr1_4:909582-909601 | None:intergenic | 50.0% | |
| GTTTCGTCGGTGGATCCAAT+TGG | - | chr1_4:909650-909669 | None:intergenic | 50.0% | |
| ACGAATCACCGGAATATGGC+AGG | + | chr1_4:909668-909687 | Msa0142110:exon | 50.0% | |
| CGAATCACCGGAATATGGCA+GGG | + | chr1_4:909669-909688 | Msa0142110:exon | 50.0% | |
| GAATCACCGGAATATGGCAG+GGG | + | chr1_4:909670-909689 | Msa0142110:exon | 50.0% | |
| !!! | GGTTTTGGATCGGCAAGGTT+TGG | - | chr1_4:909831-909850 | None:intergenic | 50.0% |
| GATCACTAGTTCCACCCTCT+TGG | - | chr1_4:910082-910101 | None:intergenic | 50.0% | |
| ACACAGACTAAGGCCTGGTT+TGG | - | chr1_4:910344-910363 | None:intergenic | 50.0% | |
| CTTACCTCCCTACCGAATTC+CGG | + | chr1_4:910607-910626 | Msa0142110:intron | 50.0% | |
| TAATCCGGAATTCGGTAGGG+AGG | - | chr1_4:910614-910633 | None:intergenic | 50.0% | |
| TGCTGTGGCGCAATAATGAC+CGG | - | chr1_4:910692-910711 | None:intergenic | 50.0% | |
| CTATGTCAGGCGTATTCTCG+TGG | - | chr1_4:911150-911169 | None:intergenic | 50.0% | |
| !! | GTTTCTTCTGGGGTAAGGGA+GGG | - | chr1_4:911422-911441 | None:intergenic | 50.0% |
| !! | TGTTTCTTCTGGGGTAAGGG+AGG | - | chr1_4:911423-911442 | None:intergenic | 50.0% |
| !! | GGCTTTGTTTGAGAGTTCGG+AGG | + | chr1_4:912299-912318 | Msa0142110:intron | 50.0% |
| ! | GTAAGGGAAGGGAGGGTTTT+GGG | - | chr1_4:912659-912678 | None:intergenic | 50.0% |
| TCAAAGGGTAAGGGAAGGGA+GGG | - | chr1_4:912666-912685 | None:intergenic | 50.0% | |
| TTCAAAGGGTAAGGGAAGGG+AGG | - | chr1_4:912667-912686 | None:intergenic | 50.0% | |
| CGAGTTCAAAGGGTAAGGGA+AGG | - | chr1_4:912671-912690 | None:intergenic | 50.0% | |
| CTGGCTGAGCATAGAGTCTT+AGG | - | chr1_4:912703-912722 | None:intergenic | 50.0% | |
| TGCTCAGCCAGTTAAGAGCT+TGG | + | chr1_4:912712-912731 | Msa0142110:intron | 50.0% | |
| TTCGGGGGAATCATGATGTG+GGG | - | chr1_4:913418-913437 | None:intergenic | 50.0% | |
| GGAGAGAATTCGAGTCGGTA+AGG | + | chr1_4:913570-913589 | Msa0142110:intron | 50.0% | |
| CAGAGAAAGAGGAAGAGCGA+AGG | + | chr1_4:913741-913760 | Msa0142110:CDS | 50.0% | |
| TTCTCCTCTACAACAGCTGC+AGG | - | chr1_4:914018-914037 | None:intergenic | 50.0% | |
| !! | GTTTTGGTGGCAGGCCTAAT+TGG | - | chr1_4:914131-914150 | None:intergenic | 50.0% |
| CACCAAAACCGAGCAGATGA+GGG | + | chr1_4:914142-914161 | Msa0142110:CDS | 50.0% | |
| TTTCACTGGGTGGGATTCTG+TGG | + | chr1_4:914209-914228 | Msa0142110:intron | 50.0% | |
| CAGTGTAGGCAAGTGACTGT+TGG | + | chr1_4:914247-914266 | Msa0142110:intron | 50.0% | |
| ! | TTCTGGAGATGGAGTCACTG+AGG | + | chr1_4:914723-914742 | Msa0142110:intron | 50.0% |
| TCTGGAGATGGAGTCACTGA+GGG | + | chr1_4:914724-914743 | Msa0142110:intron | 50.0% | |
| ! | TTAGGGTGCTCTGTTGTGGA+TGG | - | chr1_4:914803-914822 | None:intergenic | 50.0% |
| ! | GGTGCTGGGTTGGAGAAAAT+GGG | - | chr1_4:914890-914909 | None:intergenic | 50.0% |
| !! | AGGTGCTGGGTTGGAGAAAA+TGG | - | chr1_4:914891-914910 | None:intergenic | 50.0% |
| GTTATGGAGAAGGGTGGCTA+TGG | - | chr1_4:915039-915058 | None:intergenic | 50.0% | |
| CCAAGACCATCCACAATGGT+GGG | - | chr1_4:915125-915144 | None:intergenic | 50.0% | |
| AACGCCAAGACCATCCACAA+TGG | - | chr1_4:915129-915148 | None:intergenic | 50.0% | |
| ! | ATTGTGGATGGTCTTGGCGT+TGG | + | chr1_4:915128-915147 | Msa0142110:intron | 50.0% |
| ! | GACACCTCCATTTTGCAAGC+CGG | + | chr1_4:915596-915615 | Msa0142110:intron | 50.0% |
| CACATTCGCTGCCACCAAAT+CGG | - | chr1_4:915673-915692 | None:intergenic | 50.0% | |
| GACGTCACATAGGTGCTTGA+AGG | + | chr1_4:915711-915730 | Msa0142110:intron | 50.0% | |
| AGATGGCGCGCTTTGTACTT+TGG | + | chr1_4:916080-916099 | Msa0142110:intron | 50.0% | |
| TGGGTATGTAGGGCGTGTAT+TGG | - | chr1_4:916314-916333 | None:intergenic | 50.0% | |
| ACTCAAAGGGGTCCCAAACT+TGG | - | chr1_4:916376-916395 | None:intergenic | 50.0% | |
| CCTGAAACTGATACACCCGA+TGG | - | chr1_4:916461-916480 | None:intergenic | 50.0% | |
| CCATCGGGTGTATCAGTTTC+AGG | + | chr1_4:916458-916477 | Msa0142110:intron | 50.0% | |
| TGCGGGTTTGAGAAGATCGA+TGG | + | chr1_4:916701-916720 | Msa0142110:CDS | 50.0% | |
| GGGTTTGAGAAGATCGATGG+CGG | + | chr1_4:916704-916723 | Msa0142110:CDS | 50.0% | |
| GAACCGGATCTACGTGGGAT+TGG | + | chr1_4:909550-909569 | Msa0142110:five_prime_UTR | 55.0% | |
| CGACCAATCCCACGTAGATC+CGG | - | chr1_4:909556-909575 | None:intergenic | 55.0% | |
| CCACCGACGAAACGAATCAC+CGG | + | chr1_4:909657-909676 | Msa0142110:five_prime_UTR | 55.0% | |
| GCGAAACCCCTGCCATATTC+CGG | - | chr1_4:909679-909698 | None:intergenic | 55.0% | |
| TCGCTTCAGTGCGGTGATTG+CGG | + | chr1_4:909695-909714 | Msa0142110:CDS | 55.0% | |
| ! | GAGGTTGAGAACGGGTTCAG+TGG | - | chr1_4:909792-909811 | None:intergenic | 55.0% |
| GAGCAGACGAGGTTGAGAAC+GGG | - | chr1_4:909800-909819 | None:intergenic | 55.0% | |
| GGAGCAGACGAGGTTGAGAA+CGG | - | chr1_4:909801-909820 | None:intergenic | 55.0% | |
| ! | TCGGCAAGGTTTGGAGCAAG+TGG | - | chr1_4:909822-909841 | None:intergenic | 55.0% |
| TCCAAGTTACAGCAGCCTCG+AGG | - | chr1_4:911120-911139 | None:intergenic | 55.0% | |
| TGTTTGAGAGTTCGGAGGGG+AGG | + | chr1_4:912304-912323 | Msa0142110:intron | 55.0% | |
| GTTTGAGAGTTCGGAGGGGA+GGG | + | chr1_4:912305-912324 | Msa0142110:intron | 55.0% | |
| TTTGAGAGTTCGGAGGGGAG+GGG | + | chr1_4:912306-912325 | Msa0142110:intron | 55.0% | |
| ! | TGAAGGGGAGAACTTTGGGG+AGG | - | chr1_4:912600-912619 | None:intergenic | 55.0% |
| ! | GGTAAGGGAAGGGAGGGTTT+TGG | - | chr1_4:912660-912679 | None:intergenic | 55.0% |
| CGTGGGCGATATCGTTGTGT+AGG | - | chr1_4:913277-913296 | None:intergenic | 55.0% | |
| TTGGCTGTTGAAGGCTCCTC+TGG | - | chr1_4:913994-914013 | None:intergenic | 55.0% | |
| CTCTACAACAGCTGCAGGCT+TGG | - | chr1_4:914013-914032 | None:intergenic | 55.0% | |
| CAAGCCTGCAGCTGTTGTAG+AGG | + | chr1_4:914011-914030 | Msa0142110:CDS | 55.0% | |
| !! | ATCTGCTCGGTTTTGGTGGC+AGG | - | chr1_4:914140-914159 | None:intergenic | 55.0% |
| !! | CCTCATCTGCTCGGTTTTGG+TGG | - | chr1_4:914144-914163 | None:intergenic | 55.0% |
| CCACCAAAACCGAGCAGATG+AGG | + | chr1_4:914141-914160 | Msa0142110:CDS | 55.0% | |
| ! | CTCCCTCATCTGCTCGGTTT+TGG | - | chr1_4:914147-914166 | None:intergenic | 55.0% |
| CAAGCACTCCCTCATCTGCT+CGG | - | chr1_4:914153-914172 | None:intergenic | 55.0% | |
| GAAGAGGGAGACGGCGATAT+AGG | + | chr1_4:914560-914579 | Msa0142110:intron | 55.0% | |
| CTGGAGATGGAGTCACTGAG+GGG | + | chr1_4:914725-914744 | Msa0142110:intron | 55.0% | |
| TGGAGATGGAGTCACTGAGG+GGG | + | chr1_4:914726-914745 | Msa0142110:intron | 55.0% | |
| TGGGTGGTTATGGAGAAGGG+TGG | - | chr1_4:915045-915064 | None:intergenic | 55.0% | |
| ! | AGGTGAAGCACCCACCATTG+TGG | + | chr1_4:915112-915131 | Msa0142110:intron | 55.0% |
| ! | GAAGCACCCACCATTGTGGA+TGG | + | chr1_4:915116-915135 | Msa0142110:intron | 55.0% |
| CCCACCATTGTGGATGGTCT+TGG | + | chr1_4:915122-915141 | Msa0142110:intron | 55.0% | |
| GCCAAGACCATCCACAATGG+TGG | - | chr1_4:915126-915145 | None:intergenic | 55.0% | |
| !! | TGGGTCTATGTGGTGGGTGT+AGG | - | chr1_4:916429-916448 | None:intergenic | 55.0% |
| CCGGTGATTCGTTTCGTCGG+TGG | - | chr1_4:909660-909679 | None:intergenic | 60.0% | |
| GCAGGGGTTTCGCTTCAGTG+CGG | + | chr1_4:909686-909705 | Msa0142110:CDS | 60.0% | |
| TGGAGCAAGTGGAGCAGACG+AGG | - | chr1_4:909811-909830 | None:intergenic | 60.0% | |
| GCCTCGAGGCTGCTGTAACT+TGG | + | chr1_4:911116-911135 | Msa0142110:CDS | 60.0% | |
| GGAGGGGAAGTGAGGGCTTT+GGG | + | chr1_4:912322-912341 | Msa0142110:intron | 60.0% | |
| GAGGGGAAGTGAGGGCTTTG+GGG | + | chr1_4:912323-912342 | Msa0142110:intron | 60.0% | |
| ! | AGGGGAAGTGAGGGCTTTGG+GGG | + | chr1_4:912324-912343 | Msa0142110:intron | 60.0% |
| GCTGCAGGCTTGGCTGTTGA+AGG | - | chr1_4:914003-914022 | None:intergenic | 60.0% | |
| TGGTGGCAGGCCTAATTGGC+AGG | - | chr1_4:914127-914146 | None:intergenic | 60.0% | |
| GGAGATGGAGTCACTGAGGG+GGG | + | chr1_4:914727-914746 | Msa0142110:intron | 60.0% | |
| TTCGGAGGGGAGGGGAAGTG+AGG | + | chr1_4:912314-912333 | Msa0142110:intron | 65.0% | |
| TCGGAGGGGAGGGGAAGTGA+GGG | + | chr1_4:912315-912334 | Msa0142110:intron | 65.0% | |
| GGGAGGGGAAGTGAGGGCTT+TGG | + | chr1_4:912321-912340 | Msa0142110:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 909548 | 917105 | 909548 | ID=Msa0142110;Name=Msa0142110 |
| chr1_4 | mRNA | 909548 | 917105 | 909548 | ID=Msa0142110-mRNA-1;Parent=Msa0142110;Name=Msa0142110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=135|1|1|1|1|1|12|273|408 |
| chr1_4 | exon | 909548 | 909850 | 909548 | ID=Msa0142110-mRNA-1:exon:264;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 909972 | 910110 | 909972 | ID=Msa0142110-mRNA-1:exon:265;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 910411 | 910506 | 910411 | ID=Msa0142110-mRNA-1:exon:266;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 911107 | 911183 | 911107 | ID=Msa0142110-mRNA-1:exon:267;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 911386 | 911465 | 911386 | ID=Msa0142110-mRNA-1:exon:268;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 912061 | 912121 | 912061 | ID=Msa0142110-mRNA-1:exon:269;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 913571 | 913638 | 913571 | ID=Msa0142110-mRNA-1:exon:270;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 913721 | 913802 | 913721 | ID=Msa0142110-mRNA-1:exon:271;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 913961 | 914041 | 913961 | ID=Msa0142110-mRNA-1:exon:272;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 914119 | 914196 | 914119 | ID=Msa0142110-mRNA-1:exon:273;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 915944 | 916063 | 915944 | ID=Msa0142110-mRNA-1:exon:274;Parent=Msa0142110-mRNA-1 |
| chr1_4 | exon | 916656 | 917105 | 916656 | ID=Msa0142110-mRNA-1:exon:275;Parent=Msa0142110-mRNA-1 |
| chr1_4 | five_prime_UTR | 909548 | 909682 | 909548 | ID=Msa0142110-mRNA-1:five_prime_utr;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 909683 | 909850 | 909683 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 909972 | 910110 | 909972 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 910411 | 910506 | 910411 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 911107 | 911183 | 911107 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 911386 | 911465 | 911386 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 912061 | 912121 | 912061 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 913571 | 913638 | 913571 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 913721 | 913802 | 913721 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 913961 | 914041 | 913961 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 914119 | 914196 | 914119 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 915944 | 916063 | 915944 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | CDS | 916656 | 916832 | 916656 | ID=Msa0142110-mRNA-1:cds;Parent=Msa0142110-mRNA-1 |
| chr1_4 | three_prime_UTR | 916833 | 917105 | 916833 | ID=Msa0142110-mRNA-1:three_prime_utr;Parent=Msa0142110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
