Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411610 | G7JVC4 | 97.256 | 328 | 9 | 0 | 1 | 328 | 6 | 333 | 0.0 | 659 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1307750 | Msa1411610 | 0.804253 | 2.360745e-49 | -8.615850e-47 |
| Msa0387210 | Msa1411610 | 0.814142 | 1.790709e-51 | -8.615850e-47 |
| Msa0982280 | Msa1411610 | 0.804033 | 2.622899e-49 | -8.615850e-47 |
| Msa0275690 | Msa1411610 | 0.809091 | 2.245629e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411610 | MtrunA17_Chr4g0063431 | 97.256 | 328 | 9 | 0 | 1 | 328 | 6 | 333 | 0.0 | 659 |
| Msa1411610 | MtrunA17_Chr2g0332641 | 46.584 | 322 | 148 | 8 | 2 | 320 | 16 | 316 | 1.91e-91 | 275 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1411610 | AT1G15410.1 | 46.177 | 327 | 167 | 5 | 3 | 320 | 1 | 327 | 8.74e-97 | 290 |
| Msa1411610 | AT1G15410.2 | 46.177 | 327 | 167 | 5 | 3 | 320 | 1 | 327 | 8.74e-97 | 290 |
Find 68 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTAGGTCAATTATAAAT+TGG | 0.165914 | tig0023824:+31362 | Msa1411610:CDS |
| CGATTCGATGTGATCTATTC+TGG | 0.248327 | tig0023824:-30825 | None:intergenic |
| CAAAATACTATTGGTGTTAT+AGG | 0.255278 | tig0023824:+30650 | Msa1411610:CDS |
| CTGGCATCTGATGATTTGTT+AGG | 0.271912 | tig0023824:+31283 | Msa1411610:CDS |
| AATTGCAATCCATGTTCTTT+TGG | 0.314597 | tig0023824:+31237 | Msa1411610:CDS |
| GGGAGTGAATGTGGTGATTC+TGG | 0.318342 | tig0023824:+31264 | Msa1411610:CDS |
| CAAGGAAAGGCTTCAAAGTC+AGG | 0.353035 | tig0023824:+31108 | Msa1411610:CDS |
| ATCAGGGAAGTACCATTTCC+TGG | 0.357580 | tig0023824:-30584 | None:intergenic |
| GAAGATATACTTGAATTTGA+TGG | 0.382903 | tig0023824:-30524 | None:intergenic |
| AATCATCCTCAATTTCTGTT+TGG | 0.400789 | tig0023824:+30458 | Msa1411610:CDS |
| TCTATTCTGGTTCTTGTAGA+AGG | 0.402553 | tig0023824:-30812 | None:intergenic |
| GGCTAGGTCAATTATAAATT+GGG | 0.406221 | tig0023824:+31363 | Msa1411610:CDS |
| TATAGATCCTATGGATGCTT+TGG | 0.411384 | tig0023824:+31342 | Msa1411610:CDS |
| CTTTGTAGTTTGTTATTACA+AGG | 0.412464 | tig0023824:+31090 | Msa1411610:CDS |
| AAGATATGTGACCTTTCATC+AGG | 0.418415 | tig0023824:-30601 | None:intergenic |
| AGATCACATCGAATCGAATC+AGG | 0.427968 | tig0023824:+30832 | Msa1411610:CDS |
| CTAAGCCAACAAAATACTAT+TGG | 0.433449 | tig0023824:+30641 | Msa1411610:CDS |
| ATAAACGTTCTTCAGCAATC+TGG | 0.436621 | tig0023824:+30884 | Msa1411610:CDS |
| CTCTGCAAAGCATCCGCAGC+AGG | 0.440584 | tig0023824:-31181 | None:intergenic |
| TAAGAAATGTATAGATCCTA+TGG | 0.442345 | tig0023824:+31333 | Msa1411610:CDS |
| CTTGTCATCTGTCACATGCT+TGG | 0.447830 | tig0023824:+30927 | Msa1411610:CDS |
| AGTCTGAGTTCTGTTTCTAA+AGG | 0.450692 | tig0023824:-30486 | None:intergenic |
| AGCTGATGATTCAGAATTTG+CGG | 0.455725 | tig0023824:+30855 | Msa1411610:CDS |
| TGGCATCTGATGATTTGTTA+GGG | 0.460265 | tig0023824:+31284 | Msa1411610:CDS |
| TCTTGGAAAAGCTAGCTTGT+TGG | 0.468035 | tig0023824:+30702 | Msa1411610:CDS |
| AACAGAAATTGAGGATGATT+CGG | 0.470563 | tig0023824:-30455 | None:intergenic |
| ACAGTAATTGTGGCATGAAT+CGG | 0.476632 | tig0023824:-31037 | None:intergenic |
| AACTATGAGGAACCAGGAAA+TGG | 0.476902 | tig0023824:+30572 | Msa1411610:CDS |
| AGGATGATTCGGCGTCTGTA+TGG | 0.481465 | tig0023824:-30444 | None:intergenic |
| GGATCGCTGCAGACAACAAA+AGG | 0.485334 | tig0023824:-30752 | None:intergenic |
| GCCACAATTACTGTGCGGAT+TGG | 0.494350 | tig0023824:+31046 | Msa1411610:CDS |
| TAGTTTGTTATTACAAGGAA+AGG | 0.496945 | tig0023824:+31095 | Msa1411610:CDS |
| CTTAGCATTCTTGAGTTCCA+TGG | 0.499260 | tig0023824:-31008 | None:intergenic |
| TTTGGTGAGGGGAGTGAATG+TGG | 0.499971 | tig0023824:+31255 | Msa1411610:CDS |
| CAGTCGCCAACATGAAGAAA+AGG | 0.514256 | tig0023824:-30980 | None:intergenic |
| TTGCAGAGAAAAGACATAGA+AGG | 0.515880 | tig0023824:+31196 | Msa1411610:CDS |
| GAAACAACAACAAAGGTACC+TGG | 0.538159 | tig0023824:+31388 | Msa1411610:CDS |
| TCCAATCCGCACAGTAATTG+TGG | 0.538690 | tig0023824:-31047 | None:intergenic |
| TCTATACATTTCTTAAGAAG+AGG | 0.540694 | tig0023824:-31325 | None:intergenic |
| GCAACACCAAACAGAAATTG+AGG | 0.563924 | tig0023824:-30464 | None:intergenic |
| CTCCCCTCACCAAAAGAACA+TGG | 0.568950 | tig0023824:-31246 | None:intergenic |
| TGATGAGAGTGGAAACTATG+AGG | 0.570635 | tig0023824:+30559 | Msa1411610:CDS |
| GAAAAGACATAGAAGGTGCA+AGG | 0.573204 | tig0023824:+31203 | Msa1411610:CDS |
| AAGGAAAGGCTTCAAAGTCA+GGG | 0.573789 | tig0023824:+31109 | Msa1411610:CDS |
| AATGAAAACTAAAATCTCCC+AGG | 0.587340 | tig0023824:-31406 | None:intergenic |
| GCTTGTTGGAGTTCAAGAAA+CGG | 0.592696 | tig0023824:+30716 | Msa1411610:CDS |
| AATACTATTGGTGTTATAGG+AGG | 0.597817 | tig0023824:+30653 | Msa1411610:CDS |
| TGTTGGCGACTGTGTTGCCA+TGG | 0.603805 | tig0023824:+30991 | Msa1411610:CDS |
| AGCAAGGCACTTTCATTACG+TGG | 0.606138 | tig0023824:+30782 | Msa1411610:CDS |
| ATGTGACAGATGACAAGGCA+AGG | 0.610214 | tig0023824:-30921 | None:intergenic |
| GAAAGTGCCTTGCTTAACAC+AGG | 0.610968 | tig0023824:-30773 | None:intergenic |
| AATGGTACTTCCCTGATGAA+AGG | 0.612002 | tig0023824:+30590 | Msa1411610:CDS |
| CAGCGATCCTGTGTTAAGCA+AGG | 0.612466 | tig0023824:+30766 | Msa1411610:CDS |
| CAAGCATGTGACAGATGACA+AGG | 0.621083 | tig0023824:-30926 | None:intergenic |
| CTTGTAATAACAAACTACAA+AGG | 0.629407 | tig0023824:-31089 | None:intergenic |
| CTTCAGCAATCTGGAGCTCG+CGG | 0.639447 | tig0023824:+30893 | Msa1411610:CDS |
| TCGCTGCAGACAACAAAAGG+TGG | 0.640262 | tig0023824:-30749 | None:intergenic |
| ATCCTATGGATGCTTTGGCT+AGG | 0.640355 | tig0023824:+31347 | Msa1411610:CDS |
| AGTGGAAACTATGAGGAACC+AGG | 0.643821 | tig0023824:+30566 | Msa1411610:CDS |
| AAACAACAACAAAGGTACCT+GGG | 0.645689 | tig0023824:+31389 | Msa1411610:CDS |
| GACCTAGCCAAAGCATCCAT+AGG | 0.646633 | tig0023824:-31349 | None:intergenic |
| TTAAGAAGAGGATCATTGTG+AGG | 0.656825 | tig0023824:-31313 | None:intergenic |
| TTGGGCAGAAACAACAACAA+AGG | 0.665979 | tig0023824:+31381 | Msa1411610:CDS |
| AGATATGTGACCTTTCATCA+GGG | 0.669994 | tig0023824:-30600 | None:intergenic |
| GTTGCTAGACAAAGCGACTG+AGG | 0.674397 | tig0023824:+31144 | Msa1411610:CDS |
| ACATATACTAGTTCCTGCTG+CGG | 0.695004 | tig0023824:+31168 | Msa1411610:CDS |
| TTGGCACAGAGAAATTTCGA+AGG | 0.697984 | tig0023824:+30946 | Msa1411610:CDS |
| TTCATGCCACAATTACTGTG+CGG | 0.708452 | tig0023824:+31041 | Msa1411610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GAAGATATACTTGAATTTGA+TGG | - | tig0023824:30527-30546 | None:intergenic | 25.0% |
| !! | TAACACCAATAGTATTTTGT+TGG | - | tig0023824:30649-30668 | None:intergenic | 25.0% |
| !!! | CAAAATACTATTGGTGTTAT+AGG | + | tig0023824:30650-30669 | Msa1411610:CDS | 25.0% |
| ! | CTTGTAATAACAAACTACAA+AGG | - | tig0023824:31092-31111 | None:intergenic | 25.0% |
| !!! | CTTTGTAGTTTGTTATTACA+AGG | + | tig0023824:31090-31109 | Msa1411610:CDS | 25.0% |
| !!! | TAGTTTGTTATTACAAGGAA+AGG | + | tig0023824:31095-31114 | Msa1411610:CDS | 25.0% |
| ! | TCTATACATTTCTTAAGAAG+AGG | - | tig0023824:31328-31347 | None:intergenic | 25.0% |
| ! | TAAGAAATGTATAGATCCTA+TGG | + | tig0023824:31333-31352 | Msa1411610:CDS | 25.0% |
| ! | GAAGATATACTTGAATTTGA+TGG | - | tig0023824:30527-30546 | None:intergenic | 25.0% |
| !! | TAACACCAATAGTATTTTGT+TGG | - | tig0023824:30649-30668 | None:intergenic | 25.0% |
| !!! | CAAAATACTATTGGTGTTAT+AGG | + | tig0023824:30650-30669 | Msa1411610:CDS | 25.0% |
| ! | CTTGTAATAACAAACTACAA+AGG | - | tig0023824:31092-31111 | None:intergenic | 25.0% |
| !!! | CTTTGTAGTTTGTTATTACA+AGG | + | tig0023824:31090-31109 | Msa1411610:CDS | 25.0% |
| !!! | TAGTTTGTTATTACAAGGAA+AGG | + | tig0023824:31095-31114 | Msa1411610:CDS | 25.0% |
| ! | TCTATACATTTCTTAAGAAG+AGG | - | tig0023824:31328-31347 | None:intergenic | 25.0% |
| ! | TAAGAAATGTATAGATCCTA+TGG | + | tig0023824:31333-31352 | Msa1411610:CDS | 25.0% |
| AACAGAAATTGAGGATGATT+CGG | - | tig0023824:30458-30477 | None:intergenic | 30.0% | |
| AATCATCCTCAATTTCTGTT+TGG | + | tig0023824:30458-30477 | Msa1411610:CDS | 30.0% | |
| CTAAGCCAACAAAATACTAT+TGG | + | tig0023824:30641-30660 | Msa1411610:CDS | 30.0% | |
| !! | AATACTATTGGTGTTATAGG+AGG | + | tig0023824:30653-30672 | Msa1411610:CDS | 30.0% |
| !!! | TCTATCAACTCTTGTTTTCT+TGG | + | tig0023824:30685-30704 | Msa1411610:CDS | 30.0% |
| ! | AATTGCAATCCATGTTCTTT+TGG | + | tig0023824:31237-31256 | Msa1411610:CDS | 30.0% |
| TGGCTAGGTCAATTATAAAT+TGG | + | tig0023824:31362-31381 | Msa1411610:CDS | 30.0% | |
| GGCTAGGTCAATTATAAATT+GGG | + | tig0023824:31363-31382 | Msa1411610:CDS | 30.0% | |
| AACAGAAATTGAGGATGATT+CGG | - | tig0023824:30458-30477 | None:intergenic | 30.0% | |
| AATCATCCTCAATTTCTGTT+TGG | + | tig0023824:30458-30477 | Msa1411610:CDS | 30.0% | |
| CTAAGCCAACAAAATACTAT+TGG | + | tig0023824:30641-30660 | Msa1411610:CDS | 30.0% | |
| !! | AATACTATTGGTGTTATAGG+AGG | + | tig0023824:30653-30672 | Msa1411610:CDS | 30.0% |
| !!! | TCTATCAACTCTTGTTTTCT+TGG | + | tig0023824:30685-30704 | Msa1411610:CDS | 30.0% |
| ! | AATTGCAATCCATGTTCTTT+TGG | + | tig0023824:31237-31256 | Msa1411610:CDS | 30.0% |
| TGGCTAGGTCAATTATAAAT+TGG | + | tig0023824:31362-31381 | Msa1411610:CDS | 30.0% | |
| GGCTAGGTCAATTATAAATT+GGG | + | tig0023824:31363-31382 | Msa1411610:CDS | 30.0% | |
| !! | AGTCTGAGTTCTGTTTCTAA+AGG | - | tig0023824:30489-30508 | None:intergenic | 35.0% |
| ! | GTTTTTCTTACTGATGAGAG+TGG | + | tig0023824:30548-30567 | Msa1411610:CDS | 35.0% |
| AGATATGTGACCTTTCATCA+GGG | - | tig0023824:30603-30622 | None:intergenic | 35.0% | |
| AAGATATGTGACCTTTCATC+AGG | - | tig0023824:30604-30623 | None:intergenic | 35.0% | |
| !! | TCTATTCTGGTTCTTGTAGA+AGG | - | tig0023824:30815-30834 | None:intergenic | 35.0% |
| AGCTGATGATTCAGAATTTG+CGG | + | tig0023824:30855-30874 | Msa1411610:CDS | 35.0% | |
| ATAAACGTTCTTCAGCAATC+TGG | + | tig0023824:30884-30903 | Msa1411610:CDS | 35.0% | |
| ! | TCTCTACCTTTTCTTCATGT+TGG | + | tig0023824:30974-30993 | Msa1411610:CDS | 35.0% |
| ACAGTAATTGTGGCATGAAT+CGG | - | tig0023824:31040-31059 | None:intergenic | 35.0% | |
| TTGCAGAGAAAAGACATAGA+AGG | + | tig0023824:31196-31215 | Msa1411610:CDS | 35.0% | |
| ! | AATCCATGTTCTTTTGGTGA+GGG | + | tig0023824:31243-31262 | Msa1411610:CDS | 35.0% |
| !! | TGGCATCTGATGATTTGTTA+GGG | + | tig0023824:31284-31303 | Msa1411610:CDS | 35.0% |
| TTAAGAAGAGGATCATTGTG+AGG | - | tig0023824:31316-31335 | None:intergenic | 35.0% | |
| TATAGATCCTATGGATGCTT+TGG | + | tig0023824:31342-31361 | Msa1411610:CDS | 35.0% | |
| !! | AAACAACAACAAAGGTACCT+GGG | + | tig0023824:31389-31408 | Msa1411610:CDS | 35.0% |
| !! | AGTCTGAGTTCTGTTTCTAA+AGG | - | tig0023824:30489-30508 | None:intergenic | 35.0% |
| ! | GTTTTTCTTACTGATGAGAG+TGG | + | tig0023824:30548-30567 | Msa1411610:CDS | 35.0% |
| AGATATGTGACCTTTCATCA+GGG | - | tig0023824:30603-30622 | None:intergenic | 35.0% | |
| AAGATATGTGACCTTTCATC+AGG | - | tig0023824:30604-30623 | None:intergenic | 35.0% | |
| !! | TCTATTCTGGTTCTTGTAGA+AGG | - | tig0023824:30815-30834 | None:intergenic | 35.0% |
| AGCTGATGATTCAGAATTTG+CGG | + | tig0023824:30855-30874 | Msa1411610:CDS | 35.0% | |
| ATAAACGTTCTTCAGCAATC+TGG | + | tig0023824:30884-30903 | Msa1411610:CDS | 35.0% | |
| ! | TCTCTACCTTTTCTTCATGT+TGG | + | tig0023824:30974-30993 | Msa1411610:CDS | 35.0% |
| ACAGTAATTGTGGCATGAAT+CGG | - | tig0023824:31040-31059 | None:intergenic | 35.0% | |
| TTGCAGAGAAAAGACATAGA+AGG | + | tig0023824:31196-31215 | Msa1411610:CDS | 35.0% | |
| ! | AATCCATGTTCTTTTGGTGA+GGG | + | tig0023824:31243-31262 | Msa1411610:CDS | 35.0% |
| !! | TGGCATCTGATGATTTGTTA+GGG | + | tig0023824:31284-31303 | Msa1411610:CDS | 35.0% |
| TTAAGAAGAGGATCATTGTG+AGG | - | tig0023824:31316-31335 | None:intergenic | 35.0% | |
| TATAGATCCTATGGATGCTT+TGG | + | tig0023824:31342-31361 | Msa1411610:CDS | 35.0% | |
| !! | AAACAACAACAAAGGTACCT+GGG | + | tig0023824:31389-31408 | Msa1411610:CDS | 35.0% |
| GCAACACCAAACAGAAATTG+AGG | - | tig0023824:30467-30486 | None:intergenic | 40.0% | |
| TGATGAGAGTGGAAACTATG+AGG | + | tig0023824:30559-30578 | Msa1411610:CDS | 40.0% | |
| AACTATGAGGAACCAGGAAA+TGG | + | tig0023824:30572-30591 | Msa1411610:CDS | 40.0% | |
| AATGGTACTTCCCTGATGAA+AGG | + | tig0023824:30590-30609 | Msa1411610:CDS | 40.0% | |
| ! | TCTTGGAAAAGCTAGCTTGT+TGG | + | tig0023824:30702-30721 | Msa1411610:CDS | 40.0% |
| ! | GCTTGTTGGAGTTCAAGAAA+CGG | + | tig0023824:30716-30735 | Msa1411610:CDS | 40.0% |
| CGATTCGATGTGATCTATTC+TGG | - | tig0023824:30828-30847 | None:intergenic | 40.0% | |
| AGATCACATCGAATCGAATC+AGG | + | tig0023824:30832-30851 | Msa1411610:CDS | 40.0% | |
| TTGGCACAGAGAAATTTCGA+AGG | + | tig0023824:30946-30965 | Msa1411610:CDS | 40.0% | |
| CTTAGCATTCTTGAGTTCCA+TGG | - | tig0023824:31011-31030 | None:intergenic | 40.0% | |
| TTCATGCCACAATTACTGTG+CGG | + | tig0023824:31041-31060 | Msa1411610:CDS | 40.0% | |
| AAGGAAAGGCTTCAAAGTCA+GGG | + | tig0023824:31109-31128 | Msa1411610:CDS | 40.0% | |
| ACATATACTAGTTCCTGCTG+CGG | + | tig0023824:31168-31187 | Msa1411610:CDS | 40.0% | |
| ! | GAAAAGACATAGAAGGTGCA+AGG | + | tig0023824:31203-31222 | Msa1411610:CDS | 40.0% |
| ! | CAATCCATGTTCTTTTGGTG+AGG | + | tig0023824:31242-31261 | Msa1411610:CDS | 40.0% |
| ! | ATCCATGTTCTTTTGGTGAG+GGG | + | tig0023824:31244-31263 | Msa1411610:CDS | 40.0% |
| !! | CTGGCATCTGATGATTTGTT+AGG | + | tig0023824:31283-31302 | Msa1411610:CDS | 40.0% |
| TTGGGCAGAAACAACAACAA+AGG | + | tig0023824:31381-31400 | Msa1411610:CDS | 40.0% | |
| !! | GAAACAACAACAAAGGTACC+TGG | + | tig0023824:31388-31407 | Msa1411610:CDS | 40.0% |
| GCAACACCAAACAGAAATTG+AGG | - | tig0023824:30467-30486 | None:intergenic | 40.0% | |
| TGATGAGAGTGGAAACTATG+AGG | + | tig0023824:30559-30578 | Msa1411610:CDS | 40.0% | |
| AACTATGAGGAACCAGGAAA+TGG | + | tig0023824:30572-30591 | Msa1411610:CDS | 40.0% | |
| AATGGTACTTCCCTGATGAA+AGG | + | tig0023824:30590-30609 | Msa1411610:CDS | 40.0% | |
| ! | TCTTGGAAAAGCTAGCTTGT+TGG | + | tig0023824:30702-30721 | Msa1411610:CDS | 40.0% |
| ! | GCTTGTTGGAGTTCAAGAAA+CGG | + | tig0023824:30716-30735 | Msa1411610:CDS | 40.0% |
| CGATTCGATGTGATCTATTC+TGG | - | tig0023824:30828-30847 | None:intergenic | 40.0% | |
| AGATCACATCGAATCGAATC+AGG | + | tig0023824:30832-30851 | Msa1411610:CDS | 40.0% | |
| TTGGCACAGAGAAATTTCGA+AGG | + | tig0023824:30946-30965 | Msa1411610:CDS | 40.0% | |
| CTTAGCATTCTTGAGTTCCA+TGG | - | tig0023824:31011-31030 | None:intergenic | 40.0% | |
| TTCATGCCACAATTACTGTG+CGG | + | tig0023824:31041-31060 | Msa1411610:CDS | 40.0% | |
| AAGGAAAGGCTTCAAAGTCA+GGG | + | tig0023824:31109-31128 | Msa1411610:CDS | 40.0% | |
| ACATATACTAGTTCCTGCTG+CGG | + | tig0023824:31168-31187 | Msa1411610:CDS | 40.0% | |
| ! | GAAAAGACATAGAAGGTGCA+AGG | + | tig0023824:31203-31222 | Msa1411610:CDS | 40.0% |
| ! | CAATCCATGTTCTTTTGGTG+AGG | + | tig0023824:31242-31261 | Msa1411610:CDS | 40.0% |
| ! | ATCCATGTTCTTTTGGTGAG+GGG | + | tig0023824:31244-31263 | Msa1411610:CDS | 40.0% |
| !! | CTGGCATCTGATGATTTGTT+AGG | + | tig0023824:31283-31302 | Msa1411610:CDS | 40.0% |
| TTGGGCAGAAACAACAACAA+AGG | + | tig0023824:31381-31400 | Msa1411610:CDS | 40.0% | |
| !! | GAAACAACAACAAAGGTACC+TGG | + | tig0023824:31388-31407 | Msa1411610:CDS | 40.0% |
| AGTGGAAACTATGAGGAACC+AGG | + | tig0023824:30566-30585 | Msa1411610:CDS | 45.0% | |
| !! | ATCAGGGAAGTACCATTTCC+TGG | - | tig0023824:30587-30606 | None:intergenic | 45.0% |
| !! | GAAAGTGCCTTGCTTAACAC+AGG | - | tig0023824:30776-30795 | None:intergenic | 45.0% |
| ! | AGCAAGGCACTTTCATTACG+TGG | + | tig0023824:30782-30801 | Msa1411610:CDS | 45.0% |
| ATGTGACAGATGACAAGGCA+AGG | - | tig0023824:30924-30943 | None:intergenic | 45.0% | |
| CAAGCATGTGACAGATGACA+AGG | - | tig0023824:30929-30948 | None:intergenic | 45.0% | |
| CTTGTCATCTGTCACATGCT+TGG | + | tig0023824:30927-30946 | Msa1411610:CDS | 45.0% | |
| CAGTCGCCAACATGAAGAAA+AGG | - | tig0023824:30983-31002 | None:intergenic | 45.0% | |
| TCCAATCCGCACAGTAATTG+TGG | - | tig0023824:31050-31069 | None:intergenic | 45.0% | |
| CAAGGAAAGGCTTCAAAGTC+AGG | + | tig0023824:31108-31127 | Msa1411610:CDS | 45.0% | |
| ATCCTATGGATGCTTTGGCT+AGG | + | tig0023824:31347-31366 | Msa1411610:CDS | 45.0% | |
| AGTGGAAACTATGAGGAACC+AGG | + | tig0023824:30566-30585 | Msa1411610:CDS | 45.0% | |
| !! | ATCAGGGAAGTACCATTTCC+TGG | - | tig0023824:30587-30606 | None:intergenic | 45.0% |
| !! | GAAAGTGCCTTGCTTAACAC+AGG | - | tig0023824:30776-30795 | None:intergenic | 45.0% |
| ! | AGCAAGGCACTTTCATTACG+TGG | + | tig0023824:30782-30801 | Msa1411610:CDS | 45.0% |
| ATGTGACAGATGACAAGGCA+AGG | - | tig0023824:30924-30943 | None:intergenic | 45.0% | |
| CAAGCATGTGACAGATGACA+AGG | - | tig0023824:30929-30948 | None:intergenic | 45.0% | |
| CTTGTCATCTGTCACATGCT+TGG | + | tig0023824:30927-30946 | Msa1411610:CDS | 45.0% | |
| CAGTCGCCAACATGAAGAAA+AGG | - | tig0023824:30983-31002 | None:intergenic | 45.0% | |
| TCCAATCCGCACAGTAATTG+TGG | - | tig0023824:31050-31069 | None:intergenic | 45.0% | |
| CAAGGAAAGGCTTCAAAGTC+AGG | + | tig0023824:31108-31127 | Msa1411610:CDS | 45.0% | |
| ATCCTATGGATGCTTTGGCT+AGG | + | tig0023824:31347-31366 | Msa1411610:CDS | 45.0% | |
| ! | AGGATGATTCGGCGTCTGTA+TGG | - | tig0023824:30447-30466 | None:intergenic | 50.0% |
| TCGCTGCAGACAACAAAAGG+TGG | - | tig0023824:30752-30771 | None:intergenic | 50.0% | |
| GGATCGCTGCAGACAACAAA+AGG | - | tig0023824:30755-30774 | None:intergenic | 50.0% | |
| CAGCGATCCTGTGTTAAGCA+AGG | + | tig0023824:30766-30785 | Msa1411610:CDS | 50.0% | |
| GCCACAATTACTGTGCGGAT+TGG | + | tig0023824:31046-31065 | Msa1411610:CDS | 50.0% | |
| GTTGCTAGACAAAGCGACTG+AGG | + | tig0023824:31144-31163 | Msa1411610:CDS | 50.0% | |
| CTCCCCTCACCAAAAGAACA+TGG | - | tig0023824:31249-31268 | None:intergenic | 50.0% | |
| TTTGGTGAGGGGAGTGAATG+TGG | + | tig0023824:31255-31274 | Msa1411610:CDS | 50.0% | |
| GGGAGTGAATGTGGTGATTC+TGG | + | tig0023824:31264-31283 | Msa1411610:CDS | 50.0% | |
| ! | GACCTAGCCAAAGCATCCAT+AGG | - | tig0023824:31352-31371 | None:intergenic | 50.0% |
| ! | AGGATGATTCGGCGTCTGTA+TGG | - | tig0023824:30447-30466 | None:intergenic | 50.0% |
| TCGCTGCAGACAACAAAAGG+TGG | - | tig0023824:30752-30771 | None:intergenic | 50.0% | |
| GGATCGCTGCAGACAACAAA+AGG | - | tig0023824:30755-30774 | None:intergenic | 50.0% | |
| CAGCGATCCTGTGTTAAGCA+AGG | + | tig0023824:30766-30785 | Msa1411610:CDS | 50.0% | |
| GCCACAATTACTGTGCGGAT+TGG | + | tig0023824:31046-31065 | Msa1411610:CDS | 50.0% | |
| GTTGCTAGACAAAGCGACTG+AGG | + | tig0023824:31144-31163 | Msa1411610:CDS | 50.0% | |
| CTCCCCTCACCAAAAGAACA+TGG | - | tig0023824:31249-31268 | None:intergenic | 50.0% | |
| TTTGGTGAGGGGAGTGAATG+TGG | + | tig0023824:31255-31274 | Msa1411610:CDS | 50.0% | |
| GGGAGTGAATGTGGTGATTC+TGG | + | tig0023824:31264-31283 | Msa1411610:CDS | 50.0% | |
| ! | GACCTAGCCAAAGCATCCAT+AGG | - | tig0023824:31352-31371 | None:intergenic | 50.0% |
| ! | CTTCAGCAATCTGGAGCTCG+CGG | + | tig0023824:30893-30912 | Msa1411610:CDS | 55.0% |
| TGTTGGCGACTGTGTTGCCA+TGG | + | tig0023824:30991-31010 | Msa1411610:CDS | 55.0% | |
| ! | CTTCAGCAATCTGGAGCTCG+CGG | + | tig0023824:30893-30912 | Msa1411610:CDS | 55.0% |
| TGTTGGCGACTGTGTTGCCA+TGG | + | tig0023824:30991-31010 | Msa1411610:CDS | 55.0% | |
| ! | CTCTGCAAAGCATCCGCAGC+AGG | - | tig0023824:31184-31203 | None:intergenic | 60.0% |
| ! | CTCTGCAAAGCATCCGCAGC+AGG | - | tig0023824:31184-31203 | None:intergenic | 60.0% |
| ! | GCAATCTGGAGCTCGCGGTC+TGG | + | tig0023824:30898-30917 | Msa1411610:CDS | 65.0% |
| ! | GCAATCTGGAGCTCGCGGTC+TGG | + | tig0023824:30898-30917 | Msa1411610:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023824 | gene | 30434 | 31420 | 30434 | ID=Msa1411610;Name=Msa1411610 |
| tig0023824 | mRNA | 30434 | 31420 | 30434 | ID=Msa1411610-mRNA-1;Parent=Msa1411610;Name=Msa1411610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|328 |
| tig0023824 | exon | 30434 | 31420 | 30434 | ID=Msa1411610-mRNA-1:exon:20220;Parent=Msa1411610-mRNA-1 |
| tig0023824 | CDS | 30434 | 31420 | 30434 | ID=Msa1411610-mRNA-1:cds;Parent=Msa1411610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
