Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275690 | XP_013462770.1 | 93.939 | 396 | 19 | 1 | 1 | 391 | 1 | 396 | 0.0 | 723 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275690 | sp|Q94B38|GPT2_ARATH | 79.837 | 367 | 65 | 2 | 24 | 389 | 29 | 387 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031220 | Msa0275690 | 0.801309 | 9.566668e-49 | -8.615850e-47 |
| Msa0036140 | Msa0275690 | 0.808107 | 3.644207e-50 | -8.615850e-47 |
| Msa0078510 | Msa0275690 | 0.838059 | 3.600011e-57 | -8.615850e-47 |
| Msa0126290 | Msa0275690 | 0.834024 | 3.806380e-56 | -8.615850e-47 |
| Msa0137200 | Msa0275690 | 0.814539 | 1.463454e-51 | -8.615850e-47 |
| Msa0171170 | Msa0275690 | 0.829144 | 6.066404e-55 | -8.615850e-47 |
| Msa0182380 | Msa0275690 | 0.803239 | 3.832284e-49 | -8.615850e-47 |
| Msa0196370 | Msa0275690 | 0.898799 | 3.723204e-77 | -8.615850e-47 |
| Msa0238260 | Msa0275690 | 0.931767 | 2.317873e-94 | -8.615850e-47 |
| Msa0238280 | Msa0275690 | 0.924601 | 5.664092e-90 | -8.615850e-47 |
| Msa0275690 | Msa0316270 | 0.931909 | 1.878077e-94 | -8.615850e-47 |
| Msa0275690 | Msa0316280 | 0.898258 | 6.326712e-77 | -8.615850e-47 |
| Msa0275690 | Msa0379640 | 0.803425 | 3.507705e-49 | -8.615850e-47 |
| Msa0275690 | Msa0386740 | 0.858462 | 8.101423e-63 | -8.615850e-47 |
| Msa0275690 | Msa0389340 | 0.811072 | 8.403982e-51 | -8.615850e-47 |
| Msa0275690 | Msa0479740 | 0.820179 | 7.863777e-53 | -8.615850e-47 |
| Msa0275690 | Msa0516440 | 0.819332 | 1.228095e-52 | -8.615850e-47 |
| Msa0275690 | Msa0548090 | -0.806845 | 6.750358e-50 | -8.615850e-47 |
| Msa0275690 | Msa0550330 | 0.854706 | 1.029307e-61 | -8.615850e-47 |
| Msa0275690 | Msa0646780 | 0.838181 | 3.349406e-57 | -8.615850e-47 |
| Msa0275690 | Msa0658570 | 0.802004 | 6.889788e-49 | -8.615850e-47 |
| Msa0275690 | Msa0683950 | -0.805672 | 1.192011e-49 | -8.615850e-47 |
| Msa0275690 | Msa0749930 | 0.806185 | 9.299336e-50 | -8.615850e-47 |
| Msa0275690 | Msa0830420 | 0.809510 | 1.825774e-50 | -8.615850e-47 |
| Msa0275690 | Msa0838580 | 0.806727 | 7.149077e-50 | -8.615850e-47 |
| Msa0275690 | Msa0906610 | 0.807656 | 4.543676e-50 | -8.615850e-47 |
| Msa0275690 | Msa0938480 | 0.819699 | 1.012512e-52 | -8.615850e-47 |
| Msa0275690 | Msa0975640 | 0.801675 | 8.049097e-49 | -8.615850e-47 |
| Msa0275690 | Msa1139000 | -0.801554 | 8.524749e-49 | -8.615850e-47 |
| Msa0275690 | Msa1246500 | 0.804172 | 2.454264e-49 | -8.615850e-47 |
| Msa0275690 | Msa1322890 | 0.800235 | 1.585031e-48 | -8.615850e-47 |
| Msa0275690 | Msa1368500 | 0.832915 | 7.199641e-56 | -8.615850e-47 |
| Msa0275690 | Msa1376890 | 0.802365 | 5.806948e-49 | -8.615850e-47 |
| Msa0275690 | Msa1384350 | 0.812169 | 4.853213e-51 | -8.615850e-47 |
| Msa0275690 | Msa1404500 | 0.811690 | 6.171320e-51 | -8.615850e-47 |
| Msa0275690 | Msa1411610 | 0.809091 | 2.245629e-50 | -8.615850e-47 |
| Msa0275690 | Msa1437680 | 0.815939 | 7.148521e-52 | -8.615850e-47 |
| Msa0275690 | Msa1454120 | 0.805926 | 1.054512e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275690 | MtrunA17_Chr2g0288011 | 93.939 | 396 | 19 | 1 | 1 | 391 | 1 | 396 | 0.0 | 723 |
| Msa0275690 | MtrunA17_Chr4g0074541 | 82.697 | 393 | 62 | 2 | 1 | 389 | 1 | 391 | 0.0 | 615 |
| Msa0275690 | MtrunA17_Chr3g0097931 | 75.200 | 375 | 77 | 6 | 26 | 389 | 31 | 400 | 0.0 | 549 |
| Msa0275690 | MtrunA17_Chr2g0291851 | 49.852 | 337 | 156 | 7 | 54 | 387 | 66 | 392 | 2.75e-97 | 296 |
| Msa0275690 | MtrunA17_Chr4g0046561 | 43.197 | 294 | 158 | 4 | 97 | 386 | 97 | 385 | 4.66e-78 | 246 |
| Msa0275690 | MtrunA17_Chr5g0419001 | 37.778 | 405 | 220 | 10 | 7 | 391 | 3 | 395 | 1.50e-77 | 246 |
| Msa0275690 | MtrunA17_Chr6g0449891 | 44.012 | 334 | 166 | 6 | 67 | 394 | 92 | 410 | 3.46e-75 | 239 |
| Msa0275690 | MtrunA17_Chr4g0058971 | 41.391 | 302 | 172 | 3 | 95 | 394 | 81 | 379 | 6.06e-71 | 228 |
| Msa0275690 | MtrunA17_Chr3g0117501 | 42.384 | 302 | 169 | 3 | 95 | 394 | 106 | 404 | 3.17e-66 | 216 |
| Msa0275690 | MtrunA17_Chr1g0160071 | 27.303 | 304 | 182 | 7 | 106 | 389 | 21 | 305 | 1.50e-24 | 103 |
| Msa0275690 | MtrunA17_Chr3g0114581 | 26.645 | 304 | 184 | 7 | 106 | 389 | 22 | 306 | 1.36e-23 | 100 |
| Msa0275690 | MtrunA17_Chr3g0112981 | 23.077 | 299 | 216 | 9 | 99 | 389 | 26 | 318 | 8.58e-16 | 77.8 |
| Msa0275690 | MtrunA17_Chr4g0008071 | 23.288 | 292 | 213 | 6 | 105 | 389 | 19 | 306 | 7.45e-15 | 74.7 |
| Msa0275690 | MtrunA17_Chr5g0436341 | 23.129 | 294 | 213 | 8 | 104 | 389 | 14 | 302 | 1.06e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0275690 | AT1G61800.1 | 79.837 | 367 | 65 | 2 | 24 | 389 | 29 | 387 | 0.0 | 588 |
| Msa0275690 | AT1G61800.2 | 80.274 | 365 | 63 | 2 | 24 | 387 | 29 | 385 | 0.0 | 586 |
| Msa0275690 | AT5G54800.1 | 77.904 | 353 | 67 | 2 | 42 | 390 | 43 | 388 | 0.0 | 545 |
| Msa0275690 | AT5G17630.1 | 48.665 | 337 | 168 | 4 | 64 | 397 | 77 | 411 | 1.19e-109 | 328 |
| Msa0275690 | AT4G03950.1 | 56.452 | 310 | 71 | 8 | 88 | 394 | 9 | 257 | 8.13e-95 | 286 |
| Msa0275690 | AT5G46110.4 | 42.857 | 294 | 159 | 4 | 97 | 386 | 106 | 394 | 2.45e-77 | 246 |
| Msa0275690 | AT5G46110.1 | 42.857 | 294 | 159 | 4 | 97 | 386 | 106 | 394 | 3.85e-77 | 245 |
| Msa0275690 | AT5G46110.2 | 43.158 | 285 | 153 | 4 | 106 | 386 | 2 | 281 | 1.70e-76 | 239 |
| Msa0275690 | AT5G46110.3 | 41.497 | 294 | 152 | 5 | 97 | 386 | 106 | 383 | 4.62e-72 | 231 |
| Msa0275690 | AT3G01550.1 | 39.871 | 311 | 184 | 2 | 87 | 394 | 67 | 377 | 6.62e-68 | 220 |
| Msa0275690 | AT3G01550.2 | 38.907 | 311 | 182 | 3 | 87 | 394 | 67 | 372 | 9.86e-64 | 209 |
| Msa0275690 | AT5G33320.1 | 40.397 | 302 | 177 | 2 | 90 | 389 | 99 | 399 | 1.58e-62 | 207 |
| Msa0275690 | AT1G77610.1 | 26.263 | 297 | 194 | 6 | 106 | 389 | 16 | 300 | 8.24e-24 | 101 |
| Msa0275690 | AT1G21870.1 | 25.926 | 297 | 195 | 6 | 106 | 389 | 22 | 306 | 5.73e-23 | 99.4 |
| Msa0275690 | AT5G05820.1 | 23.746 | 299 | 214 | 9 | 99 | 389 | 12 | 304 | 3.42e-17 | 82.0 |
| Msa0275690 | AT3G11320.1 | 23.077 | 299 | 216 | 9 | 99 | 389 | 12 | 304 | 3.67e-15 | 76.3 |
| Msa0275690 | AT1G12500.1 | 24.150 | 294 | 210 | 8 | 104 | 389 | 64 | 352 | 3.00e-13 | 70.9 |
Find 72 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTCACGTTCTTTCTTT+TGG | 0.132463 | 2_3:-7836340 | None:intergenic |
| CTAAAGTTAACTTGGATTTC+TGG | 0.136067 | 2_3:+7836613 | Msa0275690:CDS |
| AATTCTTGTTTCAGGATTTA+TGG | 0.162906 | 2_3:+7837499 | Msa0275690:intron |
| CTCTCATTGTTGCCAATAAT+TGG | 0.171795 | 2_3:+7837196 | Msa0275690:CDS |
| CAAATTTGGCATTTGTATTC+AGG | 0.181063 | 2_3:+7837534 | Msa0275690:CDS |
| CAGAAATCCAAGTTAACTTT+AGG | 0.181603 | 2_3:-7836612 | None:intergenic |
| GGGAGCTATGATATCAAATT+TGG | 0.191205 | 2_3:+7837520 | Msa0275690:CDS |
| GGAGCAGCTATTGCAATTCT+TGG | 0.270973 | 2_3:+7838045 | Msa0275690:CDS |
| CTGTGGAGGGTCCTAAAGTT+TGG | 0.288667 | 2_3:+7837663 | Msa0275690:CDS |
| ATGACACTTGATTATATAAA+TGG | 0.296751 | 2_3:-7837900 | None:intergenic |
| CAACCAGCAGCCCAAACTTT+AGG | 0.316051 | 2_3:-7837674 | None:intergenic |
| GGTCCTAAAGTTTGGGCTGC+TGG | 0.319733 | 2_3:+7837671 | Msa0275690:CDS |
| TGTTAATCTCATGGGCTACT+AGG | 0.323213 | 2_3:+7836577 | Msa0275690:CDS |
| AGTGCACAACCACCAATTAT+TGG | 0.331060 | 2_3:-7837208 | None:intergenic |
| ATTTCCTATGCTAAATGTTA+AGG | 0.334042 | 2_3:-7837947 | None:intergenic |
| GAGCAGGCTAAACAGAATTA+AGG | 0.359432 | 2_3:+7838250 | Msa0275690:intron |
| ATTCTTGTTTCAGGATTTAT+GGG | 0.360583 | 2_3:+7837500 | Msa0275690:intron |
| TGAATGATAGAGAGGTTTCT+TGG | 0.365680 | 2_3:-7836286 | None:intergenic |
| TATGCTTACCAGACAAAATT+CGG | 0.368126 | 2_3:-7837722 | None:intergenic |
| CTCTCATTATGTTAATCTCA+TGG | 0.373482 | 2_3:+7836568 | Msa0275690:CDS |
| AGAAATCCAAGTTAACTTTA+GGG | 0.384705 | 2_3:-7836611 | None:intergenic |
| GAACTCAATTTCAATATGAT+TGG | 0.386036 | 2_3:+7837244 | Msa0275690:CDS |
| CAAACAGCTGTGTCTCAAAT+TGG | 0.392629 | 2_3:+7837698 | Msa0275690:CDS |
| AGCTGCTCCAAGAGCATTGA+TGG | 0.393145 | 2_3:-7838031 | None:intergenic |
| GGCAACAATGAGAGGTAAAC+TGG | 0.394912 | 2_3:-7837187 | None:intergenic |
| TGTGGAGGGTCCTAAAGTTT+GGG | 0.400218 | 2_3:+7837664 | Msa0275690:CDS |
| GCAGCTCAAAAGCTCAAGAT+TGG | 0.402055 | 2_3:+7836429 | Msa0275690:CDS |
| TTTCCTATGCTAAATGTTAA+GGG | 0.408792 | 2_3:-7837946 | None:intergenic |
| TCCACTTTATCCTTAGCTGC+TGG | 0.430126 | 2_3:+7836543 | Msa0275690:CDS |
| TTCTCAAAGAAAGGAATGAA+TGG | 0.434361 | 2_3:+7837563 | Msa0275690:CDS |
| AGAATTGAAAATTGAGACCT+TGG | 0.444612 | 2_3:-7836213 | None:intergenic |
| CTTCAACCCATCAATGCTCT+TGG | 0.453683 | 2_3:+7838024 | Msa0275690:CDS |
| TAAATGAATGAACAATAAGT+TGG | 0.458510 | 2_3:-7836091 | None:intergenic |
| ATAGCTGTGGCACACACAAT+TGG | 0.470268 | 2_3:+7837040 | Msa0275690:CDS |
| ACCAGCAGCTAAGGATAAAG+TGG | 0.472955 | 2_3:-7836544 | None:intergenic |
| GTTAATCTCATGGGCTACTA+GGG | 0.473011 | 2_3:+7836578 | Msa0275690:CDS |
| TGAGGCCCCTAAAGTTAACT+TGG | 0.473088 | 2_3:+7836605 | Msa0275690:CDS |
| TAGCTGTGGCACACACAATT+GGG | 0.496344 | 2_3:+7837041 | Msa0275690:CDS |
| AGGAATATATTCTCAAAGAA+AGG | 0.498153 | 2_3:+7837554 | Msa0275690:CDS |
| GAAAATTGAGACCTTGGAAG+TGG | 0.499489 | 2_3:-7836207 | None:intergenic |
| ATGAATGGGATGAGTGTTAG+TGG | 0.502849 | 2_3:+7837578 | Msa0275690:CDS |
| GACAGAATGTCAAGCTTATG+AGG | 0.507068 | 2_3:+7836356 | Msa0275690:CDS |
| TGGCACCTTCATCTATTCAC+AGG | 0.508331 | 2_3:+7838065 | Msa0275690:CDS |
| CTAAAGTTTGGGCTGCTGGT+TGG | 0.511387 | 2_3:+7837675 | Msa0275690:CDS |
| TCTCAAAGAAAGGAATGAAT+GGG | 0.514111 | 2_3:+7837564 | Msa0275690:CDS |
| CAGCTCAAAAGCTCAAGATT+GGG | 0.514431 | 2_3:+7836430 | Msa0275690:CDS |
| CCCTCCACAGCAATAGCAAA+AGG | 0.519923 | 2_3:-7837650 | None:intergenic |
| TCTCATTATGTTAATCTCAT+GGG | 0.522285 | 2_3:+7836569 | Msa0275690:CDS |
| AATGAGAGAACCAGCAGCTA+AGG | 0.537711 | 2_3:-7836553 | None:intergenic |
| TCAAAATGTTGAACAAAACA+TGG | 0.542137 | 2_3:+7836245 | Msa0275690:CDS |
| TCATTGTTGCCAATAATTGG+TGG | 0.544739 | 2_3:+7837199 | Msa0275690:CDS |
| TGAGTGGATGAATGATAGAG+AGG | 0.548633 | 2_3:-7836294 | None:intergenic |
| CTAGTATCAAGATTCATGCT+TGG | 0.552737 | 2_3:+7837148 | Msa0275690:CDS |
| GATACTAGCACACTGAAAGC+TGG | 0.555418 | 2_3:-7837133 | None:intergenic |
| GCACAAAGTTTCCACTTCCA+AGG | 0.563876 | 2_3:+7836196 | Msa0275690:CDS |
| GAAATCCAAGTTAACTTTAG+GGG | 0.565634 | 2_3:-7836610 | None:intergenic |
| CTTATGAGGCTGATAGATCA+AGG | 0.566563 | 2_3:+7836370 | Msa0275690:CDS |
| TCTCCCTTAACATTTAGCAT+AGG | 0.566878 | 2_3:+7837943 | Msa0275690:CDS |
| GCTAAACAGAATTAAGGTTG+CGG | 0.569787 | 2_3:+7838256 | Msa0275690:CDS |
| GTGGAAGTGAGCCAAGGGTA+AGG | 0.571201 | 2_3:-7836525 | None:intergenic |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 2_3:+7836587 | Msa0275690:CDS |
| ATTCACCTGTGAATAGATGA+AGG | 0.585857 | 2_3:-7838070 | None:intergenic |
| TTCACTCACATCATCAAGAG+TGG | 0.593759 | 2_3:+7837106 | Msa0275690:CDS |
| TGGTGTGTGAAAGATAATGA+TGG | 0.599746 | 2_3:-7838001 | None:intergenic |
| AGTTCAATGTTAATCTCTAG+TGG | 0.602873 | 2_3:-7836393 | None:intergenic |
| CAATTATTGGCAACAATGAG+AGG | 0.616851 | 2_3:-7837195 | None:intergenic |
| GATAAAGTGGAAGTGAGCCA+AGG | 0.631302 | 2_3:-7836531 | None:intergenic |
| CAAAATGTTGAACAAAACAT+GGG | 0.645558 | 2_3:+7836246 | Msa0275690:CDS |
| GCTGCTCCAAGAGCATTGAT+GGG | 0.645674 | 2_3:-7838030 | None:intergenic |
| ATAAAGTGGAAGTGAGCCAA+GGG | 0.650767 | 2_3:-7836530 | None:intergenic |
| ATTGGATATGCAGATAGCTG+TGG | 0.665269 | 2_3:+7837027 | Msa0275690:intron |
| AGAGCATTGATGGGTTGAAG+TGG | 0.671770 | 2_3:-7838021 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GCTTTAATTAATAATAATTT+GGG | + | chr2_3:7837828-7837847 | Msa0275690:intron | 10.0% |
| !!! | ATTTTTTTTTTTATGTTTAC+AGG | + | chr2_3:7837851-7837870 | Msa0275690:intron | 10.0% |
| !! | CGCTTTAATTAATAATAATT+TGG | + | chr2_3:7837827-7837846 | Msa0275690:intron | 15.0% |
| !! | ATCTTTATAGTTTATACTTT+GGG | + | chr2_3:7838121-7838140 | Msa0275690:intron | 15.0% |
| !! | TAAATGAATGAACAATAAGT+TGG | - | chr2_3:7836094-7836113 | None:intergenic | 20.0% |
| !! | ATTAGAATGAAAAGAAAATG+TGG | - | chr2_3:7836667-7836686 | None:intergenic | 20.0% |
| !!! | ATCCAATTTTGAATTTTCTT+AGG | - | chr2_3:7837014-7837033 | None:intergenic | 20.0% |
| !! | GAATAAGATTACAATATGAT+TGG | + | chr2_3:7837270-7837289 | Msa0275690:intron | 20.0% |
| !! | TATACTAGTTCAAATTTCTT+TGG | + | chr2_3:7837801-7837820 | Msa0275690:intron | 20.0% |
| !!! | TTTTTTTTTATGTTTACAGG+TGG | + | chr2_3:7837854-7837873 | Msa0275690:intron | 20.0% |
| !!! | TTTTTTTTATGTTTACAGGT+GGG | + | chr2_3:7837855-7837874 | Msa0275690:intron | 20.0% |
| !! | ATGACACTTGATTATATAAA+TGG | - | chr2_3:7837903-7837922 | None:intergenic | 20.0% |
| !! | GATCTTTATAGTTTATACTT+TGG | + | chr2_3:7838120-7838139 | Msa0275690:intron | 20.0% |
| !!! | GTTTTGTTCAACATTTTGAA+TGG | - | chr2_3:7836244-7836263 | None:intergenic | 25.0% |
| ! | TCAAAATGTTGAACAAAACA+TGG | + | chr2_3:7836245-7836264 | Msa0275690:CDS | 25.0% |
| ! | CAAAATGTTGAACAAAACAT+GGG | + | chr2_3:7836246-7836265 | Msa0275690:CDS | 25.0% |
| ! | TCTCATTATGTTAATCTCAT+GGG | + | chr2_3:7836569-7836588 | Msa0275690:CDS | 25.0% |
| ! | AGAAATCCAAGTTAACTTTA+GGG | - | chr2_3:7836614-7836633 | None:intergenic | 25.0% |
| !! | GATTTTTCTTACAGGAAAAA+GGG | - | chr2_3:7836643-7836662 | None:intergenic | 25.0% |
| !! | TGATTTTTCTTACAGGAAAA+AGG | - | chr2_3:7836644-7836663 | None:intergenic | 25.0% |
| ! | ATAAGACATATTTAGTGTCA+GGG | + | chr2_3:7836712-7836731 | Msa0275690:intron | 25.0% |
| ! | CACCTAAGAAAATTCAAAAT+TGG | + | chr2_3:7837009-7837028 | Msa0275690:intron | 25.0% |
| ! | GAACTCAATTTCAATATGAT+TGG | + | chr2_3:7837244-7837263 | Msa0275690:CDS | 25.0% |
| !! | AATAGTTCAATTCTTGTTTC+AGG | + | chr2_3:7837491-7837510 | Msa0275690:intron | 25.0% |
| !! | AATTCTTGTTTCAGGATTTA+TGG | + | chr2_3:7837499-7837518 | Msa0275690:intron | 25.0% |
| !! | ATTCTTGTTTCAGGATTTAT+GGG | + | chr2_3:7837500-7837519 | Msa0275690:intron | 25.0% |
| ! | AGGAATATATTCTCAAAGAA+AGG | + | chr2_3:7837554-7837573 | Msa0275690:CDS | 25.0% |
| ! | TTGAACTAGTATATCACTTT+AGG | - | chr2_3:7837794-7837813 | None:intergenic | 25.0% |
| ! | TTTCCTATGCTAAATGTTAA+GGG | - | chr2_3:7837949-7837968 | None:intergenic | 25.0% |
| ! | ATTTCCTATGCTAAATGTTA+AGG | - | chr2_3:7837950-7837969 | None:intergenic | 25.0% |
| ! | GATCAAGTACATAATTTAGA+AGG | - | chr2_3:7838104-7838123 | None:intergenic | 25.0% |
| AGAATTGAAAATTGAGACCT+TGG | - | chr2_3:7836216-7836235 | None:intergenic | 30.0% | |
| ! | TGTTCAACATTTTGAATGGT+TGG | - | chr2_3:7836240-7836259 | None:intergenic | 30.0% |
| ! | TAGCAATGCAAAATTTTGAG+TGG | - | chr2_3:7836313-7836332 | None:intergenic | 30.0% |
| AGTTCAATGTTAATCTCTAG+TGG | - | chr2_3:7836396-7836415 | None:intergenic | 30.0% | |
| CTCTCATTATGTTAATCTCA+TGG | + | chr2_3:7836568-7836587 | Msa0275690:CDS | 30.0% | |
| GAAATCCAAGTTAACTTTAG+GGG | - | chr2_3:7836613-7836632 | None:intergenic | 30.0% | |
| CAGAAATCCAAGTTAACTTT+AGG | - | chr2_3:7836615-7836634 | None:intergenic | 30.0% | |
| ! | CTAAAGTTAACTTGGATTTC+TGG | + | chr2_3:7836613-7836632 | Msa0275690:CDS | 30.0% |
| ! | AATGTGGTGATTTTTCTTAC+AGG | - | chr2_3:7836651-7836670 | None:intergenic | 30.0% |
| CATAAGACATATTTAGTGTC+AGG | + | chr2_3:7836711-7836730 | Msa0275690:intron | 30.0% | |
| TCTAAATAGTTAACCCACTT+GGG | + | chr2_3:7837348-7837367 | Msa0275690:intron | 30.0% | |
| CAAATTTGGCATTTGTATTC+AGG | + | chr2_3:7837534-7837553 | Msa0275690:CDS | 30.0% | |
| TTCTCAAAGAAAGGAATGAA+TGG | + | chr2_3:7837563-7837582 | Msa0275690:CDS | 30.0% | |
| TCTCAAAGAAAGGAATGAAT+GGG | + | chr2_3:7837564-7837583 | Msa0275690:CDS | 30.0% | |
| TATGCTTACCAGACAAAATT+CGG | - | chr2_3:7837725-7837744 | None:intergenic | 30.0% | |
| !!! | TGTTGATTTTTTGAAAGAGC+AGG | + | chr2_3:7838234-7838253 | Msa0275690:intron | 30.0% |
| TGAATGATAGAGAGGTTTCT+TGG | - | chr2_3:7836289-7836308 | None:intergenic | 35.0% | |
| ! | TCTGTCACGTTCTTTCTTTT+GGG | - | chr2_3:7836342-7836361 | None:intergenic | 35.0% |
| ! | TTCTGTCACGTTCTTTCTTT+TGG | - | chr2_3:7836343-7836362 | None:intergenic | 35.0% |
| !!! | TTTTGAGCTGCTTTTTCACT+AGG | - | chr2_3:7836420-7836439 | None:intergenic | 35.0% |
| !! | TTGGGTTGTATTTTGCTACT+TGG | + | chr2_3:7836448-7836467 | Msa0275690:CDS | 35.0% |
| !! | GTTGTATTTTGCTACTTGGT+GGG | + | chr2_3:7836452-7836471 | Msa0275690:CDS | 35.0% |
| TTGAGTGTAACTACATGCAT+CGG | - | chr2_3:7836756-7836775 | None:intergenic | 35.0% | |
| GTACTATTGAAAAGTGGCAT+TGG | - | chr2_3:7836828-7836847 | None:intergenic | 35.0% | |
| ACTTCTTCAACTTGAAGTGT+CGG | - | chr2_3:7836850-7836869 | None:intergenic | 35.0% | |
| GTAACTACATTTGTCAGTGT+CGG | - | chr2_3:7836882-7836901 | None:intergenic | 35.0% | |
| GACACATTGATATCAGATAC+CGG | - | chr2_3:7836959-7836978 | None:intergenic | 35.0% | |
| CTAGTATCAAGATTCATGCT+TGG | + | chr2_3:7837148-7837167 | Msa0275690:CDS | 35.0% | |
| CAATTATTGGCAACAATGAG+AGG | - | chr2_3:7837198-7837217 | None:intergenic | 35.0% | |
| CTCTCATTGTTGCCAATAAT+TGG | + | chr2_3:7837196-7837215 | Msa0275690:CDS | 35.0% | |
| TCATTGTTGCCAATAATTGG+TGG | + | chr2_3:7837199-7837218 | Msa0275690:CDS | 35.0% | |
| CTCTAAATAGTTAACCCACT+TGG | + | chr2_3:7837347-7837366 | Msa0275690:intron | 35.0% | |
| GGGAGCTATGATATCAAATT+TGG | + | chr2_3:7837520-7837539 | Msa0275690:CDS | 35.0% | |
| ! | AAATTGGTCCGAATTTTGTC+TGG | + | chr2_3:7837714-7837733 | Msa0275690:CDS | 35.0% |
| ! | TTTTTATGTTTACAGGTGGG+TGG | + | chr2_3:7837858-7837877 | Msa0275690:intron | 35.0% |
| TCTCCCTTAACATTTAGCAT+AGG | + | chr2_3:7837943-7837962 | Msa0275690:CDS | 35.0% | |
| TGGTGTGTGAAAGATAATGA+TGG | - | chr2_3:7838004-7838023 | None:intergenic | 35.0% | |
| ATTCACCTGTGAATAGATGA+AGG | - | chr2_3:7838073-7838092 | None:intergenic | 35.0% | |
| TGAGATTGAAACCTTATGTG+AGG | + | chr2_3:7838187-7838206 | Msa0275690:intron | 35.0% | |
| GAGATTGAAACCTTATGTGA+GGG | + | chr2_3:7838188-7838207 | Msa0275690:intron | 35.0% | |
| TTAATTGCATCCCTCACATA+AGG | - | chr2_3:7838201-7838220 | None:intergenic | 35.0% | |
| GCTAAACAGAATTAAGGTTG+CGG | + | chr2_3:7838256-7838275 | Msa0275690:CDS | 35.0% | |
| GAAAATTGAGACCTTGGAAG+TGG | - | chr2_3:7836210-7836229 | None:intergenic | 40.0% | |
| TGAGTGGATGAATGATAGAG+AGG | - | chr2_3:7836297-7836316 | None:intergenic | 40.0% | |
| GACAGAATGTCAAGCTTATG+AGG | + | chr2_3:7836356-7836375 | Msa0275690:CDS | 40.0% | |
| CTTATGAGGCTGATAGATCA+AGG | + | chr2_3:7836370-7836389 | Msa0275690:CDS | 40.0% | |
| CAGCTCAAAAGCTCAAGATT+GGG | + | chr2_3:7836430-7836449 | Msa0275690:CDS | 40.0% | |
| !! | GGTTGTATTTTGCTACTTGG+TGG | + | chr2_3:7836451-7836470 | Msa0275690:CDS | 40.0% |
| ! | TGAATGCTTTTCCTTACCCT+TGG | + | chr2_3:7836514-7836533 | Msa0275690:CDS | 40.0% |
| ATAAAGTGGAAGTGAGCCAA+GGG | - | chr2_3:7836533-7836552 | None:intergenic | 40.0% | |
| ! | TGTTAATCTCATGGGCTACT+AGG | + | chr2_3:7836577-7836596 | Msa0275690:CDS | 40.0% |
| ! | GTTAATCTCATGGGCTACTA+GGG | + | chr2_3:7836578-7836597 | Msa0275690:CDS | 40.0% |
| ! | GTTTTCACTTTCACTAGCAC+TGG | + | chr2_3:7836688-7836707 | Msa0275690:intron | 40.0% |
| ! | GTGTCGGTACTATTGAAAAG+TGG | - | chr2_3:7836834-7836853 | None:intergenic | 40.0% |
| CTATGTGTCAGTATAGTGTC+TGG | + | chr2_3:7836924-7836943 | Msa0275690:intron | 40.0% | |
| ATTGGATATGCAGATAGCTG+TGG | + | chr2_3:7837027-7837046 | Msa0275690:intron | 40.0% | |
| TTCACTCACATCATCAAGAG+TGG | + | chr2_3:7837106-7837125 | Msa0275690:CDS | 40.0% | |
| AGTGCACAACCACCAATTAT+TGG | - | chr2_3:7837211-7837230 | None:intergenic | 40.0% | |
| AATAGTTAACCCACTTGGGT+TGG | + | chr2_3:7837352-7837371 | Msa0275690:intron | 40.0% | |
| ! | TTCTCTCTGGTGCTAATTTG+AGG | + | chr2_3:7837433-7837452 | Msa0275690:intron | 40.0% |
| ! | TCTCTCTGGTGCTAATTTGA+GGG | + | chr2_3:7837434-7837453 | Msa0275690:intron | 40.0% |
| ATGAATGGGATGAGTGTTAG+TGG | + | chr2_3:7837578-7837597 | Msa0275690:CDS | 40.0% | |
| CAAACAGCTGTGTCTCAAAT+TGG | + | chr2_3:7837698-7837717 | Msa0275690:CDS | 40.0% | |
| GAGCAGGCTAAACAGAATTA+AGG | + | chr2_3:7838250-7838269 | Msa0275690:intron | 40.0% | |
| ! | TGAAGCTTTTATCGAACGCA+TGG | + | chr2_3:7838282-7838301 | Msa0275690:CDS | 40.0% |
| ! | GAAGCTTTTATCGAACGCAT+GGG | + | chr2_3:7838283-7838302 | Msa0275690:CDS | 40.0% |
| GCACAAAGTTTCCACTTCCA+AGG | + | chr2_3:7836196-7836215 | Msa0275690:CDS | 45.0% | |
| GCAGCTCAAAAGCTCAAGAT+TGG | + | chr2_3:7836429-7836448 | Msa0275690:CDS | 45.0% | |
| GATAAAGTGGAAGTGAGCCA+AGG | - | chr2_3:7836534-7836553 | None:intergenic | 45.0% | |
| TCCACTTTATCCTTAGCTGC+TGG | + | chr2_3:7836543-7836562 | Msa0275690:CDS | 45.0% | |
| ACCAGCAGCTAAGGATAAAG+TGG | - | chr2_3:7836547-7836566 | None:intergenic | 45.0% | |
| AATGAGAGAACCAGCAGCTA+AGG | - | chr2_3:7836556-7836575 | None:intergenic | 45.0% | |
| TGAGGCCCCTAAAGTTAACT+TGG | + | chr2_3:7836605-7836624 | Msa0275690:CDS | 45.0% | |
| ! | GTAACTACATGCATCGGTGT+CGG | - | chr2_3:7836750-7836769 | None:intergenic | 45.0% |
| ! | TAGTGTCTGGTTTCTGTGTC+CGG | + | chr2_3:7836937-7836956 | Msa0275690:intron | 45.0% |
| CAATGTGTCAGTGTAGTGTC+CGG | + | chr2_3:7836970-7836989 | Msa0275690:intron | 45.0% | |
| GTGAGCACTAGAAAGAACAC+CGG | - | chr2_3:7836992-7837011 | None:intergenic | 45.0% | |
| ATAGCTGTGGCACACACAAT+TGG | + | chr2_3:7837040-7837059 | Msa0275690:CDS | 45.0% | |
| TAGCTGTGGCACACACAATT+GGG | + | chr2_3:7837041-7837060 | Msa0275690:CDS | 45.0% | |
| GATACTAGCACACTGAAAGC+TGG | - | chr2_3:7837136-7837155 | None:intergenic | 45.0% | |
| GGCAACAATGAGAGGTAAAC+TGG | - | chr2_3:7837190-7837209 | None:intergenic | 45.0% | |
| ! | CTCTCTGGTGCTAATTTGAG+GGG | + | chr2_3:7837435-7837454 | Msa0275690:intron | 45.0% |
| ! | TCTCTGGTGCTAATTTGAGG+GGG | + | chr2_3:7837436-7837455 | Msa0275690:intron | 45.0% |
| !!! | CACACCTTTTGCTATTGCTG+TGG | + | chr2_3:7837646-7837665 | Msa0275690:CDS | 45.0% |
| !!! | ACCTTTTGCTATTGCTGTGG+AGG | + | chr2_3:7837649-7837668 | Msa0275690:CDS | 45.0% |
| !!! | CCTTTTGCTATTGCTGTGGA+GGG | + | chr2_3:7837650-7837669 | Msa0275690:CDS | 45.0% |
| TGTGGAGGGTCCTAAAGTTT+GGG | + | chr2_3:7837664-7837683 | Msa0275690:CDS | 45.0% | |
| !! | AGAGCATTGATGGGTTGAAG+TGG | - | chr2_3:7838024-7838043 | None:intergenic | 45.0% |
| CTTCAACCCATCAATGCTCT+TGG | + | chr2_3:7838024-7838043 | Msa0275690:CDS | 45.0% | |
| GGAGCAGCTATTGCAATTCT+TGG | + | chr2_3:7838045-7838064 | Msa0275690:CDS | 45.0% | |
| TGGCACCTTCATCTATTCAC+AGG | + | chr2_3:7838065-7838084 | Msa0275690:CDS | 45.0% | |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | + | chr2_3:7837366-7837385 | Msa0275690:intron | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | + | chr2_3:7837371-7837390 | Msa0275690:intron | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | + | chr2_3:7837372-7837391 | Msa0275690:intron | 50.0% |
| AGTCCCAAGCCAATACCACT+AGG | - | chr2_3:7837378-7837397 | None:intergenic | 50.0% | |
| !! | AGTGGTATTGGCTTGGGACT+TGG | + | chr2_3:7837378-7837397 | Msa0275690:intron | 50.0% |
| !! | GTGGTATTGGCTTGGGACTT+GGG | + | chr2_3:7837379-7837398 | Msa0275690:intron | 50.0% |
| GAATCGAACCTGAGACCTTG+AGG | - | chr2_3:7837416-7837435 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+TGG | + | chr2_3:7837420-7837439 | Msa0275690:intron | 50.0% | |
| CCCTCCACAGCAATAGCAAA+AGG | - | chr2_3:7837653-7837672 | None:intergenic | 50.0% | |
| CTGTGGAGGGTCCTAAAGTT+TGG | + | chr2_3:7837663-7837682 | Msa0275690:CDS | 50.0% | |
| CAACCAGCAGCCCAAACTTT+AGG | - | chr2_3:7837677-7837696 | None:intergenic | 50.0% | |
| CTAAAGTTTGGGCTGCTGGT+TGG | + | chr2_3:7837675-7837694 | Msa0275690:CDS | 50.0% | |
| !! | GCTGCTCCAAGAGCATTGAT+GGG | - | chr2_3:7838033-7838052 | None:intergenic | 50.0% |
| !! | AGCTGCTCCAAGAGCATTGA+TGG | - | chr2_3:7838034-7838053 | None:intergenic | 50.0% |
| GTGGAAGTGAGCCAAGGGTA+AGG | - | chr2_3:7836528-7836547 | None:intergenic | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | + | chr2_3:7836587-7836606 | Msa0275690:CDS | 55.0% |
| ACCACTAGGCCAACCCAAGT+GGG | - | chr2_3:7837364-7837383 | None:intergenic | 55.0% | |
| TACCACTAGGCCAACCCAAG+TGG | - | chr2_3:7837365-7837384 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTTGAGG+AGG | - | chr2_3:7837413-7837432 | None:intergenic | 55.0% | |
| GGTCCTAAAGTTTGGGCTGC+TGG | + | chr2_3:7837671-7837690 | Msa0275690:CDS | 55.0% | |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | + | chr2_3:7837360-7837379 | Msa0275690:intron | 60.0% |
| ! | TGGGAGTGTGCTCCTCCTCA+AGG | + | chr2_3:7837398-7837417 | Msa0275690:intron | 60.0% |
| GTGCTCCTCCTCAAGGTCTC+AGG | + | chr2_3:7837405-7837424 | Msa0275690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 7836052 | 7838313 | 7836052 | ID=Msa0275690;Name=Msa0275690 |
| chr2_3 | mRNA | 7836052 | 7838313 | 7836052 | ID=Msa0275690-mRNA-1;Parent=Msa0275690;Name=Msa0275690-mRNA-1;_AED=0.38;_eAED=0.40;_QI=101|0.75|0.8|1|1|1|5|0|407 |
| chr2_3 | exon | 7836052 | 7836650 | 7836052 | ID=Msa0275690-mRNA-1:exon:3556;Parent=Msa0275690-mRNA-1 |
| chr2_3 | exon | 7837040 | 7837265 | 7837040 | ID=Msa0275690-mRNA-1:exon:3557;Parent=Msa0275690-mRNA-1 |
| chr2_3 | exon | 7837513 | 7837735 | 7837513 | ID=Msa0275690-mRNA-1:exon:3558;Parent=Msa0275690-mRNA-1 |
| chr2_3 | exon | 7837873 | 7838086 | 7837873 | ID=Msa0275690-mRNA-1:exon:3559;Parent=Msa0275690-mRNA-1 |
| chr2_3 | exon | 7838251 | 7838313 | 7838251 | ID=Msa0275690-mRNA-1:exon:3560;Parent=Msa0275690-mRNA-1 |
| chr2_3 | five_prime_UTR | 7836052 | 7836152 | 7836052 | ID=Msa0275690-mRNA-1:five_prime_utr;Parent=Msa0275690-mRNA-1 |
| chr2_3 | CDS | 7836153 | 7836650 | 7836153 | ID=Msa0275690-mRNA-1:cds;Parent=Msa0275690-mRNA-1 |
| chr2_3 | CDS | 7837040 | 7837265 | 7837040 | ID=Msa0275690-mRNA-1:cds;Parent=Msa0275690-mRNA-1 |
| chr2_3 | CDS | 7837513 | 7837735 | 7837513 | ID=Msa0275690-mRNA-1:cds;Parent=Msa0275690-mRNA-1 |
| chr2_3 | CDS | 7837873 | 7838086 | 7837873 | ID=Msa0275690-mRNA-1:cds;Parent=Msa0275690-mRNA-1 |
| chr2_3 | CDS | 7838251 | 7838313 | 7838251 | ID=Msa0275690-mRNA-1:cds;Parent=Msa0275690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
