Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412220 | sp|Q9FEN9|SHL_ARATH | 70.233 | 215 | 61 | 2 | 1 | 215 | 1 | 212 | 3.67e-114 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412220 | G7J7R0 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 8.78e-164 | 459 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1412220 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365720 | Msa1412220 | 0.855082 | 8.008883e-62 | -8.615850e-47 |
| Msa1412220 | Msa1460200 | 0.928647 | 2.148466e-92 | -8.615850e-47 |
| Msa0386960 | Msa1412220 | 0.870587 | 1.303777e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412220 | MtrunA17_Chr3g0145031 | 99.541 | 218 | 1 | 0 | 1 | 218 | 1 | 218 | 1.69e-167 | 459 |
| Msa1412220 | MtrunA17_Chr3g0145041 | 71.000 | 200 | 54 | 1 | 19 | 218 | 1 | 196 | 4.77e-105 | 301 |
| Msa1412220 | MtrunA17_Chr2g0316511 | 67.580 | 219 | 67 | 3 | 1 | 218 | 1 | 216 | 6.57e-105 | 301 |
| Msa1412220 | MtrunA17_Chr2g0324381 | 50.521 | 192 | 87 | 5 | 1 | 190 | 10 | 195 | 2.02e-62 | 193 |
| Msa1412220 | MtrunA17_Chr5g0447451 | 46.512 | 129 | 59 | 5 | 74 | 192 | 15 | 143 | 2.53e-31 | 112 |
| Msa1412220 | MtrunA17_Chr2g0324361 | 52.000 | 100 | 44 | 3 | 27 | 126 | 12 | 107 | 5.28e-29 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412220 | AT4G39100.1 | 70.233 | 215 | 61 | 2 | 1 | 215 | 1 | 212 | 3.73e-115 | 328 |
| Msa1412220 | AT4G22140.2 | 67.431 | 218 | 67 | 3 | 2 | 218 | 10 | 224 | 8.53e-111 | 317 |
| Msa1412220 | AT4G22140.1 | 67.299 | 211 | 65 | 3 | 2 | 211 | 10 | 217 | 1.97e-106 | 306 |
| Msa1412220 | AT4G22140.3 | 67.299 | 211 | 65 | 3 | 2 | 211 | 10 | 217 | 1.97e-106 | 306 |
| Msa1412220 | AT4G39100.2 | 76.364 | 165 | 37 | 1 | 1 | 165 | 1 | 163 | 4.70e-96 | 277 |
| Msa1412220 | AT4G04260.2 | 62.162 | 185 | 66 | 3 | 28 | 210 | 9 | 191 | 1.94e-78 | 234 |
| Msa1412220 | AT4G04260.1 | 61.111 | 180 | 66 | 3 | 33 | 210 | 1 | 178 | 3.09e-74 | 223 |
| Msa1412220 | AT4G04260.3 | 71.186 | 118 | 33 | 1 | 25 | 142 | 24 | 140 | 1.46e-57 | 179 |
Find 91 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACTCTAGGTTTCGCTTT+GGG | 0.256713 | tig0023872:-74761 | None:intergenic |
| AGAGAAGTAGAGGGGTTTGT+TGG | 0.281029 | tig0023872:-74596 | None:intergenic |
| AAAAGAAGGTTATGGCAATT+TGG | 0.283943 | tig0023872:-74626 | None:intergenic |
| AGGTTTCGCTTTGGGGCTTT+TGG | 0.301619 | tig0023872:-74753 | None:intergenic |
| CCTCCACTTCCAAGGGAAAC+AGG | 0.330389 | tig0023872:-78598 | None:intergenic |
| CTTTGCCACGTAAGAGGGTT+TGG | 0.340256 | tig0023872:-74939 | None:intergenic |
| GAAGGAAAGTGTATTGTTCA+TGG | 0.347757 | tig0023872:+75121 | Msa1412220:CDS |
| AAAGAAGTGGTCAAGTCTTT+CGG | 0.363321 | tig0023872:-77583 | None:intergenic |
| ACTCACACTGCAACTCTATC+AGG | 0.365443 | tig0023872:-75232 | None:intergenic |
| GAAAAGAAAGATTGAATTGA+AGG | 0.367791 | tig0023872:-74662 | None:intergenic |
| TTAACGTCCGGTGGTATTAC+CGG | 0.372519 | tig0023872:+75005 | Msa1412220:CDS |
| CACTGAACCATCAGATCATC+AGG | 0.376018 | tig0023872:-76022 | None:intergenic |
| TGTGAAAGTTGTTCCGTTGA+AGG | 0.381340 | tig0023872:+77606 | Msa1412220:CDS |
| CATCAGATCATCAGGGTTGT+AGG | 0.418034 | tig0023872:-76014 | None:intergenic |
| CTAATTTAAAAGTCTGTCAA+TGG | 0.420485 | tig0023872:+78562 | Msa1412220:intron |
| CATAACATCGCTTCTACCTT+CGG | 0.423203 | tig0023872:-78402 | None:intergenic |
| GATGTCATCGTGTTCGTAGT+TGG | 0.429318 | tig0023872:+78780 | Msa1412220:three_prime_UTR |
| ATCCCTGTTTCCCTTGGAAG+TGG | 0.436201 | tig0023872:+78595 | Msa1412220:three_prime_UTR |
| TTCGATCTTTGCCACGTAAG+AGG | 0.444854 | tig0023872:-74945 | None:intergenic |
| TATGACTCTAGGTTTCGCTT+TGG | 0.453882 | tig0023872:-74762 | None:intergenic |
| ATAGAAATAAAAGAAGGTTA+TGG | 0.462193 | tig0023872:-74634 | None:intergenic |
| CAAACTCTTTGATAGTAAGT+TGG | 0.472062 | tig0023872:+74500 | Msa1412220:five_prime_UTR |
| TTTGAGTACAATTCTGCTAC+TGG | 0.478917 | tig0023872:+75199 | Msa1412220:CDS |
| TGGTAGTTAAAGAGAAGTAG+AGG | 0.479471 | tig0023872:-74606 | None:intergenic |
| AGTATCATCCCTGTTTCCCT+TGG | 0.485614 | tig0023872:+78589 | Msa1412220:three_prime_UTR |
| CAGAGTGCTGATACAATTGA+AGG | 0.496733 | tig0023872:+75103 | Msa1412220:CDS |
| AGTGTGAGGGCTGCAGTGAC+TGG | 0.500549 | tig0023872:+76041 | Msa1412220:CDS |
| TCGATCTTTGCCACGTAAGA+GGG | 0.507398 | tig0023872:-74944 | None:intergenic |
| TGACTCTAGGTTTCGCTTTG+GGG | 0.508250 | tig0023872:-74760 | None:intergenic |
| GCCACGTAAGAGGGTTTGGA+TGG | 0.509773 | tig0023872:-74935 | None:intergenic |
| TTTACTAAAGTAGTGTCTAC+TGG | 0.510488 | tig0023872:-78732 | None:intergenic |
| GAGACAGTTTCACGGTTCAA+AGG | 0.514600 | tig0023872:+75051 | Msa1412220:CDS |
| GATTCTCTATCTATCCCCAT+CGG | 0.517084 | tig0023872:+78660 | Msa1412220:three_prime_UTR |
| CTGAACAAACTCTGTGACAA+TGG | 0.517564 | tig0023872:+78489 | Msa1412220:three_prime_UTR |
| GGTAGTTAAAGAGAAGTAGA+GGG | 0.520077 | tig0023872:-74605 | None:intergenic |
| TACCGGCCGGAGGAGTCAAT+TGG | 0.521187 | tig0023872:+75022 | Msa1412220:CDS |
| AACAAATCTGTCACAATCAA+AGG | 0.523901 | tig0023872:+74801 | Msa1412220:CDS |
| ATCAGATCATCAGGGTTGTA+GGG | 0.525800 | tig0023872:-76013 | None:intergenic |
| CCTGTTTCCCTTGGAAGTGG+AGG | 0.538466 | tig0023872:+78598 | Msa1412220:three_prime_UTR |
| AAGAGTAGATCTGTAATGGA+GGG | 0.539700 | tig0023872:+78436 | Msa1412220:three_prime_UTR |
| TGCTTTGTCTTTGAGTGGCA+TGG | 0.540617 | tig0023872:-74529 | None:intergenic |
| AGTAGACACTACTTTAGTAA+AGG | 0.540847 | tig0023872:+78734 | Msa1412220:three_prime_UTR |
| GGTAGAAGCGATGTTATGTA+AGG | 0.541584 | tig0023872:+78407 | Msa1412220:exon |
| CGGCCACCAATTGACTCCTC+CGG | 0.542045 | tig0023872:-75028 | None:intergenic |
| GAGAAAATAGAAATAAAAGA+AGG | 0.542861 | tig0023872:-74640 | None:intergenic |
| CTACAACCCTGATGATCTGA+TGG | 0.544719 | tig0023872:+76015 | Msa1412220:CDS |
| TGATCTGATGGTTCAGTGTG+AGG | 0.546259 | tig0023872:+76027 | Msa1412220:CDS |
| AAACACATCCTCCACTTCCA+AGG | 0.546710 | tig0023872:-78606 | None:intergenic |
| ATTCTCTATCTATCCCCATC+GGG | 0.547443 | tig0023872:+78661 | Msa1412220:three_prime_UTR |
| AAAGAGTAGATCTGTAATGG+AGG | 0.548323 | tig0023872:+78435 | Msa1412220:three_prime_UTR |
| CGGCCGGAGGAGTCAATTGG+TGG | 0.557866 | tig0023872:+75025 | Msa1412220:CDS |
| GAGGGTTTGGATGGATCAGA+TGG | 0.563022 | tig0023872:-74926 | None:intergenic |
| TACACTAAGCTTGATGCTGT+TGG | 0.564424 | tig0023872:+75154 | Msa1412220:CDS |
| CGGAGGAGTCAATTGGTGGC+CGG | 0.567621 | tig0023872:+75029 | Msa1412220:CDS |
| AGTTTGTTCAGCTCCTACCC+AGG | 0.568031 | tig0023872:-78477 | None:intergenic |
| GTTTGACTGAGTATGACTCT+AGG | 0.568800 | tig0023872:-74773 | None:intergenic |
| GTAGTTAAAGAGAAGTAGAG+GGG | 0.569534 | tig0023872:-74604 | None:intergenic |
| CTCCACTTCCAAGGGAAACA+GGG | 0.570140 | tig0023872:-78597 | None:intergenic |
| GGTGGCCGGAGACAGTTTCA+CGG | 0.570440 | tig0023872:+75043 | Msa1412220:CDS |
| TAAAATGCTTTGTCTTTGAG+TGG | 0.576034 | tig0023872:-74534 | None:intergenic |
| GAGTATGAACAAGGACCCGA+TGG | 0.577865 | tig0023872:-78676 | None:intergenic |
| TACCCAGGATTACAAAAGCA+AGG | 0.579112 | tig0023872:-78462 | None:intergenic |
| ACAGTCATGTCTATACAAGC+AGG | 0.584679 | tig0023872:-77552 | None:intergenic |
| CACCAATTGACTCCTCCGGC+CGG | 0.585767 | tig0023872:-75024 | None:intergenic |
| TCTTACGTGGCAAAGATCGA+AGG | 0.586509 | tig0023872:+74947 | Msa1412220:CDS |
| TGGATACTAAACGCCGCCGA+AGG | 0.592385 | tig0023872:+78386 | Msa1412220:CDS |
| AACAACTTTCACAAAAGAAG+TGG | 0.593717 | tig0023872:-77596 | None:intergenic |
| TTGAACCGTGAAACTGTCTC+CGG | 0.596615 | tig0023872:-75048 | None:intergenic |
| AACACATCCTCCACTTCCAA+GGG | 0.601418 | tig0023872:-78605 | None:intergenic |
| AGAGTAGATCTGTAATGGAG+GGG | 0.605098 | tig0023872:+78437 | Msa1412220:three_prime_UTR |
| GATCTGATGGTTCAGTGTGA+GGG | 0.605136 | tig0023872:+76028 | Msa1412220:CDS |
| CAAAAGTCTGAGTATGAACA+AGG | 0.607531 | tig0023872:-78685 | None:intergenic |
| CGTGTGCTTTACACATCACA+CGG | 0.608973 | tig0023872:-74563 | None:intergenic |
| CCTCCGGCCGGTAATACCAC+CGG | 0.617818 | tig0023872:-75012 | None:intergenic |
| ACCCAGGATTACAAAAGCAA+GGG | 0.628118 | tig0023872:-78461 | None:intergenic |
| CTAACGTTAAAGTTAACGTC+CGG | 0.628228 | tig0023872:+74993 | Msa1412220:CDS |
| ACTGCGTAACTTACTTACTG+TGG | 0.632355 | tig0023872:+74452 | None:intergenic |
| TACAAGACTCGCAGATACAA+AGG | 0.635448 | tig0023872:+77659 | Msa1412220:CDS |
| AGTATGAACAAGGACCCGAT+GGG | 0.641512 | tig0023872:-78675 | None:intergenic |
| CGTCCGGTGGTATTACCGGC+CGG | 0.645283 | tig0023872:+75009 | Msa1412220:CDS |
| CTTACGTGGCAAAGATCGAA+GGG | 0.647189 | tig0023872:+74948 | Msa1412220:CDS |
| AACACAACACAACACAACCA+TGG | 0.662889 | tig0023872:+74725 | Msa1412220:exon |
| TCCATCCAAACCCTCTTACG+TGG | 0.664323 | tig0023872:+74934 | Msa1412220:CDS |
| CCGGTGGTATTACCGGCCGG+AGG | 0.671639 | tig0023872:+75012 | Msa1412220:CDS |
| ACGTTAAAGTTAACGTCCGG+TGG | 0.681208 | tig0023872:+74996 | Msa1412220:CDS |
| TTGTATAGACATGACTGTGG+AGG | 0.686994 | tig0023872:+77557 | Msa1412220:CDS |
| GGGATCGAAGCTGATTCACG+AGG | 0.707404 | tig0023872:+74968 | Msa1412220:CDS |
| ACTGAACCATCAGATCATCA+GGG | 0.710984 | tig0023872:-76021 | None:intergenic |
| GTATGAACAAGGACCCGATG+GGG | 0.713752 | tig0023872:-78674 | None:intergenic |
| AACATCGCTTCTACCTTCGG+CGG | 0.747293 | tig0023872:-78399 | None:intergenic |
| TGCTTGTATAGACATGACTG+TGG | 0.776325 | tig0023872:+77554 | Msa1412220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTAGATTATGTTT+TGG | + | tig0023872:75393-75412 | Msa1412220:intron | 10.0% |
| !!! | ATTTTATTACTTACTTTTAT+TGG | + | tig0023872:77343-77362 | Msa1412220:intron | 10.0% |
| !! | TCTTTATAATAACATAATAA+AGG | - | tig0023872:78164-78183 | None:intergenic | 10.0% |
| !!! | TTTTTTTAAAATGACAAAAG+TGG | - | tig0023872:75561-75580 | None:intergenic | 15.0% |
| !!! | AAACAATAATAATTCTAGTT+AGG | + | tig0023872:76689-76708 | Msa1412220:intron | 15.0% |
| !! | CCATTTATATTCATTTAAAT+AGG | - | tig0023872:76740-76759 | None:intergenic | 15.0% |
| !! | CCTATTTAAATGAATATAAA+TGG | + | tig0023872:76737-76756 | Msa1412220:intron | 15.0% |
| !! | TATTTATAAACCATGATAAA+TGG | + | tig0023872:77388-77407 | Msa1412220:intron | 15.0% |
| !! | ATAGAAATAAAAGAAGGTTA+TGG | - | tig0023872:74637-74656 | None:intergenic | 20.0% |
| !! | GAGAAAATAGAAATAAAAGA+AGG | - | tig0023872:74643-74662 | None:intergenic | 20.0% |
| !!! | TAAAGATATGATTTTTGTGT+TGG | + | tig0023872:75298-75317 | Msa1412220:intron | 20.0% |
| !! | TGTTATTGCAAAATAGAATT+TGG | + | tig0023872:75475-75494 | Msa1412220:intron | 20.0% |
| !! | GTTATTGCAAAATAGAATTT+GGG | + | tig0023872:75476-75495 | Msa1412220:intron | 20.0% |
| !! | TCATAAACAAAATAATCCAA+GGG | - | tig0023872:75814-75833 | None:intergenic | 20.0% |
| !! | ATCATAAACAAAATAATCCA+AGG | - | tig0023872:75815-75834 | None:intergenic | 20.0% |
| !!! | AGAAAACAAGTATTTTAAGT+CGG | + | tig0023872:76202-76221 | Msa1412220:intron | 20.0% |
| !! | ATCAAAAGAAACATAATTCT+CGG | - | tig0023872:76559-76578 | None:intergenic | 20.0% |
| !! | ATTATACTTGTAATTGTTCA+TGG | + | tig0023872:76577-76596 | Msa1412220:intron | 20.0% |
| !!! | AGACAATAATAATTCTAGTT+AGG | + | tig0023872:76626-76645 | Msa1412220:intron | 20.0% |
| !! | AAATATGCTCAAACAAATTA+AGG | + | tig0023872:77012-77031 | Msa1412220:intron | 20.0% |
| !! | AATATGCTCAAACAAATTAA+GGG | + | tig0023872:77013-77032 | Msa1412220:intron | 20.0% |
| !! | AAAATCTATCTTTCTATCTA+AGG | - | tig0023872:77238-77257 | None:intergenic | 20.0% |
| !! | AATAAACAGTTTAACAAGTT+GGG | - | tig0023872:77288-77307 | None:intergenic | 20.0% |
| !! | TAATAAACAGTTTAACAAGT+TGG | - | tig0023872:77289-77308 | None:intergenic | 20.0% |
| !! | AAGTAATAAAATGTCATACA+AGG | - | tig0023872:77335-77354 | None:intergenic | 20.0% |
| !! | TTCTATATGAGAATATAACT+AGG | + | tig0023872:77848-77867 | Msa1412220:intron | 20.0% |
| !! | ACATAAATTAACCCAAAAAA+AGG | - | tig0023872:77991-78010 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTGTAAATTTTTC+TGG | + | tig0023872:78309-78328 | Msa1412220:intron | 20.0% |
| !!! | ATTAGTGCTTATATTTTGTT+TGG | + | tig0023872:78354-78373 | Msa1412220:intron | 20.0% |
| !!! | TATATTTTGTTTGGTATTGT+AGG | + | tig0023872:78363-78382 | Msa1412220:intron | 20.0% |
| ! | GAAAAGAAAGATTGAATTGA+AGG | - | tig0023872:74665-74684 | None:intergenic | 25.0% |
| ! | AAAGAGAAAGAGAAAATTAG+AGG | - | tig0023872:74856-74875 | None:intergenic | 25.0% |
| !! | TATGATTTTTGTGTTGGAAA+TGG | + | tig0023872:75304-75323 | Msa1412220:intron | 25.0% |
| !!! | TTTTGGTTAATGACAACTTT+AGG | + | tig0023872:75410-75429 | Msa1412220:intron | 25.0% |
| ! | AAGGAGCAAATAATAGATTT+CGG | - | tig0023872:75628-75647 | None:intergenic | 25.0% |
| ! | CATAAACAAAATAATCCAAG+GGG | - | tig0023872:75813-75832 | None:intergenic | 25.0% |
| !! | TTCATTGCTCAAATTTTTCA+TGG | + | tig0023872:75968-75987 | Msa1412220:intron | 25.0% |
| !! | AACTCTTTCCTATGATATTT+TGG | + | tig0023872:76263-76282 | Msa1412220:intron | 25.0% |
| ! | TCAAAAGAAACATAATTCTC+GGG | - | tig0023872:76558-76577 | None:intergenic | 25.0% |
| !! | CAATAATAATTCTAGTTAGG+TGG | + | tig0023872:76629-76648 | Msa1412220:intron | 25.0% |
| !! | TAATTCTAGTTAGGTGATTA+TGG | + | tig0023872:76698-76717 | Msa1412220:intron | 25.0% |
| ! | TTCATTTAAATAGGCTAACT+GGG | - | tig0023872:76731-76750 | None:intergenic | 25.0% |
| ! | ATTCATTTAAATAGGCTAAC+TGG | - | tig0023872:76732-76751 | None:intergenic | 25.0% |
| ! | ACTACGAATTGAATATATGA+TGG | + | tig0023872:76777-76796 | Msa1412220:intron | 25.0% |
| ! | ATTGAACAAATTAACGTAGT+TGG | + | tig0023872:76816-76835 | Msa1412220:intron | 25.0% |
| ! | ATGCTTAAAATTCACTTGAA+TGG | + | tig0023872:76923-76942 | Msa1412220:intron | 25.0% |
| ! | TGCTTAAAATTCACTTGAAT+GGG | + | tig0023872:76924-76943 | Msa1412220:intron | 25.0% |
| !! | GAAGAGGATTAATTCTTTTT+GGG | + | tig0023872:77109-77128 | Msa1412220:intron | 25.0% |
| !! | AAGAGGATTAATTCTTTTTG+GGG | + | tig0023872:77110-77129 | Msa1412220:intron | 25.0% |
| !! | CAAATCTTTTCCATTTATCA+TGG | - | tig0023872:77401-77420 | None:intergenic | 25.0% |
| ! | TGATAAATGGAAAAGATTTG+AGG | + | tig0023872:77401-77420 | Msa1412220:intron | 25.0% |
| ! | AAGCATAATATTTGTGATTC+AGG | + | tig0023872:77523-77542 | Msa1412220:intron | 25.0% |
| !! | TTTATTTGAATTGACTTACC+TGG | + | tig0023872:77735-77754 | Msa1412220:intron | 25.0% |
| ! | AAGATATCAAAGATCTTAAG+TGG | - | tig0023872:77761-77780 | None:intergenic | 25.0% |
| ! | TCTAATAATACATCTTACAC+AGG | - | tig0023872:77794-77813 | None:intergenic | 25.0% |
| !!! | AGATTATCTGTTTTTAGACT+TGG | + | tig0023872:77811-77830 | Msa1412220:intron | 25.0% |
| ! | TAAATTAACCCAAAAAAAGG+TGG | - | tig0023872:77988-78007 | None:intergenic | 25.0% |
| ! | GGTTAATTTATGTTTCTTCA+AGG | + | tig0023872:77998-78017 | Msa1412220:intron | 25.0% |
| !! | TCAAGGTTAATGCTAATTTT+AGG | + | tig0023872:78015-78034 | Msa1412220:intron | 25.0% |
| ! | AAATGTAGACCAAATATAGT+GGG | - | tig0023872:78128-78147 | None:intergenic | 25.0% |
| ! | AAAATGTAGACCAAATATAG+TGG | - | tig0023872:78129-78148 | None:intergenic | 25.0% |
| ! | TAAAAAGAGTAGATCTGTAA+TGG | + | tig0023872:78432-78451 | Msa1412220:three_prime_UTR | 25.0% |
| ! | CTAATTTAAAAGTCTGTCAA+TGG | + | tig0023872:78562-78581 | Msa1412220:intron | 25.0% |
| ! | CAAACTCTTTGATAGTAAGT+TGG | + | tig0023872:74500-74519 | Msa1412220:five_prime_UTR | 30.0% |
| TAAAATGCTTTGTCTTTGAG+TGG | - | tig0023872:74537-74556 | None:intergenic | 30.0% | |
| AAAAGAAGGTTATGGCAATT+TGG | - | tig0023872:74629-74648 | None:intergenic | 30.0% | |
| AACAAATCTGTCACAATCAA+AGG | + | tig0023872:74801-74820 | Msa1412220:CDS | 30.0% | |
| !! | TGATTTTTGTTTGTTTCAGC+TGG | + | tig0023872:74884-74903 | Msa1412220:intron | 30.0% |
| !! | GATTTTTGTTTGTTTCAGCT+GGG | + | tig0023872:74885-74904 | Msa1412220:intron | 30.0% |
| !! | ATTTTTGTTTGTTTCAGCTG+GGG | + | tig0023872:74886-74905 | Msa1412220:intron | 30.0% |
| ! | CCTAATAGCTTTCATTTTAG+AGG | - | tig0023872:75594-75613 | None:intergenic | 30.0% |
| !! | CCTCTAAAATGAAAGCTATT+AGG | + | tig0023872:75591-75610 | Msa1412220:intron | 30.0% |
| !! | TGATGATGAAGCATTTTGAT+TGG | + | tig0023872:75831-75850 | Msa1412220:intron | 30.0% |
| TTCAACAATGGATCTTTATC+TGG | + | tig0023872:75927-75946 | Msa1412220:intron | 30.0% | |
| !! | TCAGTATCTGTTTGATTTTC+TGG | + | tig0023872:76131-76150 | Msa1412220:intron | 30.0% |
| !! | ATACTTGTTTTCTTCACATG+AGG | - | tig0023872:76195-76214 | None:intergenic | 30.0% |
| !!! | TCCTATGATATTTTGGTACT+TGG | + | tig0023872:76270-76289 | Msa1412220:intron | 30.0% |
| ACCAAGTACCAAAATATCAT+AGG | - | tig0023872:76274-76293 | None:intergenic | 30.0% | |
| !!! | TATGATATTTTGGTACTTGG+TGG | + | tig0023872:76273-76292 | Msa1412220:intron | 30.0% |
| AATTCTTAATAGCAGCTCAT+AGG | + | tig0023872:76316-76335 | Msa1412220:intron | 30.0% | |
| TAGATATGTGTATGCTTGTT+TGG | + | tig0023872:76508-76527 | Msa1412220:intron | 30.0% | |
| CATGGCATATGATATGATAT+AGG | + | tig0023872:76595-76614 | Msa1412220:intron | 30.0% | |
| !! | GTCATGTTATTTAGCTTTGT+TGG | + | tig0023872:76651-76670 | Msa1412220:intron | 30.0% |
| TCCACTTGGATAGATATTTA+CGG | - | tig0023872:76986-77005 | None:intergenic | 30.0% | |
| GCATATTTCAAAAATCCACT+TGG | - | tig0023872:77000-77019 | None:intergenic | 30.0% | |
| TCAAACAAATTAAGGGTAAG+TGG | + | tig0023872:77020-77039 | Msa1412220:intron | 30.0% | |
| ! | TAATGAAGATCTGAAATGCT+GGG | + | tig0023872:77044-77063 | Msa1412220:intron | 30.0% |
| !! | GTTCTTTTTAGAAGAAGAAG+AGG | + | tig0023872:77084-77103 | Msa1412220:intron | 30.0% |
| ! | GGAAGAGGATTAATTCTTTT+TGG | + | tig0023872:77108-77127 | Msa1412220:intron | 30.0% |
| ATCTAGTCCTTTCTTATTCT+GGG | + | tig0023872:77133-77152 | Msa1412220:intron | 30.0% | |
| ATCTTCTGTGTAATTATTCC+TGG | + | tig0023872:77162-77181 | Msa1412220:intron | 30.0% | |
| TATTGGAGACATGATCAATT+TGG | + | tig0023872:77360-77379 | Msa1412220:intron | 30.0% | |
| ! | ATGGAAAAGATTTGAGGTTT+CGG | + | tig0023872:77407-77426 | Msa1412220:intron | 30.0% |
| TTTGCAAGAGACCTTTATAA+TGG | + | tig0023872:77469-77488 | Msa1412220:intron | 30.0% | |
| TTGCAAGAGACCTTTATAAT+GGG | + | tig0023872:77470-77489 | Msa1412220:intron | 30.0% | |
| AACAACTTTCACAAAAGAAG+TGG | - | tig0023872:77599-77618 | None:intergenic | 30.0% | |
| TATGAGAATATAACTAGGCA+TGG | + | tig0023872:77853-77872 | Msa1412220:intron | 30.0% | |
| !!! | TATCTACTTCCACCTTTTTT+TGG | + | tig0023872:77976-77995 | Msa1412220:intron | 30.0% |
| !!! | ATCTACTTCCACCTTTTTTT+GGG | + | tig0023872:77977-77996 | Msa1412220:intron | 30.0% |
| ! | CCATATATGATTGTTTTCCA+TGG | - | tig0023872:78248-78267 | None:intergenic | 30.0% |
| CCATGGAAAACAATCATATA+TGG | + | tig0023872:78245-78264 | Msa1412220:intron | 30.0% | |
| !! | ATTTTGTTTGGTATTGTAGG+TGG | + | tig0023872:78366-78385 | Msa1412220:intron | 30.0% |
| ATAGTCTTTCTCTACTTTCA+TGG | + | tig0023872:78528-78547 | Msa1412220:intron | 30.0% | |
| TTTACTAAAGTAGTGTCTAC+TGG | - | tig0023872:78735-78754 | None:intergenic | 30.0% | |
| AGTAGACACTACTTTAGTAA+AGG | + | tig0023872:78734-78753 | Msa1412220:three_prime_UTR | 30.0% | |
| GTAGTTAAAGAGAAGTAGAG+GGG | - | tig0023872:74607-74626 | None:intergenic | 35.0% | |
| GGTAGTTAAAGAGAAGTAGA+GGG | - | tig0023872:74608-74627 | None:intergenic | 35.0% | |
| TGGTAGTTAAAGAGAAGTAG+AGG | - | tig0023872:74609-74628 | None:intergenic | 35.0% | |
| CTAACGTTAAAGTTAACGTC+CGG | + | tig0023872:74993-75012 | Msa1412220:CDS | 35.0% | |
| ! | GAAGGAAAGTGTATTGTTCA+TGG | + | tig0023872:75121-75140 | Msa1412220:CDS | 35.0% |
| TTTGAGTACAATTCTGCTAC+TGG | + | tig0023872:75199-75218 | Msa1412220:CDS | 35.0% | |
| CTATTATTTGCTCCTTCGAT+TGG | + | tig0023872:75632-75651 | Msa1412220:intron | 35.0% | |
| ATGGATCTTTATCTGGATTC+TGG | + | tig0023872:75934-75953 | Msa1412220:intron | 35.0% | |
| ! | TTGCTCAAATTTTTCATGGC+AGG | + | tig0023872:75972-75991 | Msa1412220:intron | 35.0% |
| TTTAAGTCGGCATTAACCAT+AGG | + | tig0023872:76215-76234 | Msa1412220:intron | 35.0% | |
| AAGGAAAAATGATGCTCCTA+TGG | - | tig0023872:76234-76253 | None:intergenic | 35.0% | |
| GTCCTGTATAAGAAGAACAA+GGG | - | tig0023872:76462-76481 | None:intergenic | 35.0% | |
| AGTCCTGTATAAGAAGAACA+AGG | - | tig0023872:76463-76482 | None:intergenic | 35.0% | |
| GTGTATGCTTGTTTGGATTA+TGG | + | tig0023872:76515-76534 | Msa1412220:intron | 35.0% | |
| AGAAATAAGCAATGAGACAC+CGG | - | tig0023872:76865-76884 | None:intergenic | 35.0% | |
| CCACTTGGATAGATATTTAC+GGG | - | tig0023872:76985-77004 | None:intergenic | 35.0% | |
| ! | CTAATGAAGATCTGAAATGC+TGG | + | tig0023872:77043-77062 | Msa1412220:intron | 35.0% |
| !! | CTTTTTAGAAGAAGAAGAGG+AGG | + | tig0023872:77087-77106 | Msa1412220:intron | 35.0% |
| GATCTAGTCCTTTCTTATTC+TGG | + | tig0023872:77132-77151 | Msa1412220:intron | 35.0% | |
| TTCTGTGTAATTATTCCTGG+TGG | + | tig0023872:77165-77184 | Msa1412220:intron | 35.0% | |
| ! | CTTTAATTAGTCTGTGCATG+TGG | - | tig0023872:77210-77229 | None:intergenic | 35.0% |
| CTGTTGTGACAAACTTAATG+TGG | + | tig0023872:77258-77277 | Msa1412220:intron | 35.0% | |
| TGCAAGAGACCTTTATAATG+GGG | + | tig0023872:77471-77490 | Msa1412220:intron | 35.0% | |
| ! | ACCTTTATAATGGGGATATC+AGG | + | tig0023872:77479-77498 | Msa1412220:intron | 35.0% |
| AAAGAAGTGGTCAAGTCTTT+CGG | - | tig0023872:77586-77605 | None:intergenic | 35.0% | |
| CTCATACTATCAAACAACAG+TGG | - | tig0023872:77696-77715 | None:intergenic | 35.0% | |
| GAAGCTTTGCCTACTTTAAT+GGG | - | tig0023872:78073-78092 | None:intergenic | 35.0% | |
| !! | TTTTTCTGGTGACGAAAGAA+AGG | + | tig0023872:78323-78342 | Msa1412220:intron | 35.0% |
| AAAGAGTAGATCTGTAATGG+AGG | + | tig0023872:78435-78454 | Msa1412220:three_prime_UTR | 35.0% | |
| ! | AAGAGTAGATCTGTAATGGA+GGG | + | tig0023872:78436-78455 | Msa1412220:three_prime_UTR | 35.0% |
| CAAAAGTCTGAGTATGAACA+AGG | - | tig0023872:78688-78707 | None:intergenic | 35.0% | |
| AACACAACACAACACAACCA+TGG | + | tig0023872:74725-74744 | Msa1412220:exon | 40.0% | |
| ATGACTCTAGGTTTCGCTTT+GGG | - | tig0023872:74764-74783 | None:intergenic | 40.0% | |
| TATGACTCTAGGTTTCGCTT+TGG | - | tig0023872:74765-74784 | None:intergenic | 40.0% | |
| GTTTGACTGAGTATGACTCT+AGG | - | tig0023872:74776-74795 | None:intergenic | 40.0% | |
| !! | CAGAGTGCTGATACAATTGA+AGG | + | tig0023872:75103-75122 | Msa1412220:CDS | 40.0% |
| TACACTAAGCTTGATGCTGT+TGG | + | tig0023872:75154-75173 | Msa1412220:CDS | 40.0% | |
| AGGTTTCATTCTCCAATCGA+AGG | - | tig0023872:75647-75666 | None:intergenic | 40.0% | |
| ! | TACAGAGTTGATCACCTGAA+TGG | + | tig0023872:75690-75709 | Msa1412220:intron | 40.0% |
| AAGAAGGATCATCACCATTC+AGG | - | tig0023872:75707-75726 | None:intergenic | 40.0% | |
| ATCCTTCTTCTCCAATGCAA+AGG | + | tig0023872:75718-75737 | Msa1412220:intron | 40.0% | |
| TCCTTCTTCTCCAATGCAAA+GGG | + | tig0023872:75719-75738 | Msa1412220:intron | 40.0% | |
| TGAACTGAGGATAAGGATGA+TGG | - | tig0023872:75863-75882 | None:intergenic | 40.0% | |
| CATCCAAATCAGGTTTACAG+CGG | - | tig0023872:75889-75908 | None:intergenic | 40.0% | |
| !! | CTGTAAACCTGATTTGGATG+AGG | + | tig0023872:75889-75908 | Msa1412220:intron | 40.0% |
| ATCAGATCATCAGGGTTGTA+GGG | - | tig0023872:76016-76035 | None:intergenic | 40.0% | |
| ACTGAACCATCAGATCATCA+GGG | - | tig0023872:76024-76043 | None:intergenic | 40.0% | |
| TTTCTGGACTCTTGTATGTC+TGG | + | tig0023872:76147-76166 | Msa1412220:intron | 40.0% | |
| GGAAAGAGTTGTCTTACTCA+AGG | - | tig0023872:76253-76272 | None:intergenic | 40.0% | |
| !! | GATTCTGCTTTGTTTCCTTC+TGG | + | tig0023872:76369-76388 | Msa1412220:intron | 40.0% |
| TAAGAAGAACAAGGGAGAGT+AGG | - | tig0023872:76454-76473 | None:intergenic | 40.0% | |
| CTCCCTTGTTCTTCTTATAC+AGG | + | tig0023872:76457-76476 | Msa1412220:intron | 40.0% | |
| GCATGACATTTCTTTCACAC+TGG | + | tig0023872:76838-76857 | Msa1412220:intron | 40.0% | |
| ACATTTCTTTCACACTGGTC+CGG | + | tig0023872:76843-76862 | Msa1412220:intron | 40.0% | |
| GATAGATATTTACGGGACCT+CGG | - | tig0023872:76978-76997 | None:intergenic | 40.0% | |
| CCCGTAAATATCTATCCAAG+TGG | + | tig0023872:76982-77001 | Msa1412220:intron | 40.0% | |
| AAATGCTGGGAAAGATTCAG+AGG | + | tig0023872:77057-77076 | Msa1412220:intron | 40.0% | |
| TAGTCCTTTCTTATTCTGGG+AGG | + | tig0023872:77136-77155 | Msa1412220:intron | 40.0% | |
| ! | AGTCCTTTCTTATTCTGGGA+GGG | + | tig0023872:77137-77156 | Msa1412220:intron | 40.0% |
| GGAGACATGATCAATTTGGA+TGG | + | tig0023872:77364-77383 | Msa1412220:intron | 40.0% | |
| CATATAAACCCTCATCGAAC+AGG | - | tig0023872:77435-77454 | None:intergenic | 40.0% | |
| GCCTGATATCCCCATTATAA+AGG | - | tig0023872:77483-77502 | None:intergenic | 40.0% | |
| ACAGTCATGTCTATACAAGC+AGG | - | tig0023872:77555-77574 | None:intergenic | 40.0% | |
| TGCTTGTATAGACATGACTG+TGG | + | tig0023872:77554-77573 | Msa1412220:CDS | 40.0% | |
| TTGTATAGACATGACTGTGG+AGG | + | tig0023872:77557-77576 | Msa1412220:CDS | 40.0% | |
| TGTGAAAGTTGTTCCGTTGA+AGG | + | tig0023872:77606-77625 | Msa1412220:CDS | 40.0% | |
| !!! | CAGCTGTTTTTGACCTTCAA+CGG | - | tig0023872:77622-77641 | None:intergenic | 40.0% |
| TACAAGACTCGCAGATACAA+AGG | + | tig0023872:77659-77678 | Msa1412220:CDS | 40.0% | |
| ATCAAAGATCTTAAGTGGCC+AGG | - | tig0023872:77756-77775 | None:intergenic | 40.0% | |
| CTTAAGCTGCCCATTAAAGT+AGG | + | tig0023872:78061-78080 | Msa1412220:intron | 40.0% | |
| CGAAGCTTTGCCTACTTTAA+TGG | - | tig0023872:78074-78093 | None:intergenic | 40.0% | |
| ATATCTGCATGCTTCTCCTT+AGG | + | tig0023872:78217-78236 | Msa1412220:intron | 40.0% | |
| CATAACATCGCTTCTACCTT+CGG | - | tig0023872:78405-78424 | None:intergenic | 40.0% | |
| GGTAGAAGCGATGTTATGTA+AGG | + | tig0023872:78407-78426 | Msa1412220:exon | 40.0% | |
| ! | AGAGTAGATCTGTAATGGAG+GGG | + | tig0023872:78437-78456 | Msa1412220:three_prime_UTR | 40.0% |
| !! | ACCCTTGCTTTTGTAATCCT+GGG | + | tig0023872:78460-78479 | Msa1412220:three_prime_UTR | 40.0% |
| ACCCAGGATTACAAAAGCAA+GGG | - | tig0023872:78464-78483 | None:intergenic | 40.0% | |
| TACCCAGGATTACAAAAGCA+AGG | - | tig0023872:78465-78484 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGTAATCCTGGGT+AGG | + | tig0023872:78464-78483 | Msa1412220:three_prime_UTR | 40.0% |
| CTGAACAAACTCTGTGACAA+TGG | + | tig0023872:78489-78508 | Msa1412220:three_prime_UTR | 40.0% | |
| GATTCTCTATCTATCCCCAT+CGG | + | tig0023872:78660-78679 | Msa1412220:three_prime_UTR | 40.0% | |
| ATTCTCTATCTATCCCCATC+GGG | + | tig0023872:78661-78680 | Msa1412220:three_prime_UTR | 40.0% | |
| TGCTTTGTCTTTGAGTGGCA+TGG | - | tig0023872:74532-74551 | None:intergenic | 45.0% | |
| CGTGTGCTTTACACATCACA+CGG | - | tig0023872:74566-74585 | None:intergenic | 45.0% | |
| AGAGAAGTAGAGGGGTTTGT+TGG | - | tig0023872:74599-74618 | None:intergenic | 45.0% | |
| TGACTCTAGGTTTCGCTTTG+GGG | - | tig0023872:74763-74782 | None:intergenic | 45.0% | |
| TCGATCTTTGCCACGTAAGA+GGG | - | tig0023872:74947-74966 | None:intergenic | 45.0% | |
| TTCGATCTTTGCCACGTAAG+AGG | - | tig0023872:74948-74967 | None:intergenic | 45.0% | |
| TCTTACGTGGCAAAGATCGA+AGG | + | tig0023872:74947-74966 | Msa1412220:CDS | 45.0% | |
| CTTACGTGGCAAAGATCGAA+GGG | + | tig0023872:74948-74967 | Msa1412220:CDS | 45.0% | |
| ACGTTAAAGTTAACGTCCGG+TGG | + | tig0023872:74996-75015 | Msa1412220:CDS | 45.0% | |
| TTAACGTCCGGTGGTATTAC+CGG | + | tig0023872:75005-75024 | Msa1412220:CDS | 45.0% | |
| TTGAACCGTGAAACTGTCTC+CGG | - | tig0023872:75051-75070 | None:intergenic | 45.0% | |
| GAGACAGTTTCACGGTTCAA+AGG | + | tig0023872:75051-75070 | Msa1412220:CDS | 45.0% | |
| ACTCACACTGCAACTCTATC+AGG | - | tig0023872:75235-75254 | None:intergenic | 45.0% | |
| GTGATCAACTCTGTATTCCG+AGG | - | tig0023872:75685-75704 | None:intergenic | 45.0% | |
| CCTTCTTCTCCAATGCAAAG+GGG | + | tig0023872:75720-75739 | Msa1412220:intron | 45.0% | |
| AAGTGTCTACCCCTTTGCAT+TGG | - | tig0023872:75732-75751 | None:intergenic | 45.0% | |
| GACACTTCGATGTCAAAGTG+AGG | + | tig0023872:75745-75764 | Msa1412220:intron | 45.0% | |
| TTCGATGTCAAAGTGAGGCA+GGG | + | tig0023872:75750-75769 | Msa1412220:intron | 45.0% | |
| CTCTAGTCCTCATCCAAATC+AGG | - | tig0023872:75899-75918 | None:intergenic | 45.0% | |
| CATCAGATCATCAGGGTTGT+AGG | - | tig0023872:76017-76036 | None:intergenic | 45.0% | |
| CTACAACCCTGATGATCTGA+TGG | + | tig0023872:76015-76034 | Msa1412220:CDS | 45.0% | |
| CACTGAACCATCAGATCATC+AGG | - | tig0023872:76025-76044 | None:intergenic | 45.0% | |
| TGATCTGATGGTTCAGTGTG+AGG | + | tig0023872:76027-76046 | Msa1412220:CDS | 45.0% | |
| GATCTGATGGTTCAGTGTGA+GGG | + | tig0023872:76028-76047 | Msa1412220:CDS | 45.0% | |
| !! | CTCTTGTATGTCTGGTTCTG+TGG | + | tig0023872:76155-76174 | Msa1412220:intron | 45.0% |
| AACAAGGGAGAGTAGGTTTG+GGG | - | tig0023872:76447-76466 | None:intergenic | 45.0% | |
| GAACAAGGGAGAGTAGGTTT+GGG | - | tig0023872:76448-76467 | None:intergenic | 45.0% | |
| AGAACAAGGGAGAGTAGGTT+TGG | - | tig0023872:76449-76468 | None:intergenic | 45.0% | |
| CTCGGAGTTAAGGCAGAATT+TGG | - | tig0023872:76960-76979 | None:intergenic | 45.0% | |
| CAAATTCTGCCTTAACTCCG+AGG | + | tig0023872:76958-76977 | Msa1412220:intron | 45.0% | |
| AGAAGAAGAAGAGGAGGAAG+AGG | + | tig0023872:77093-77112 | Msa1412220:intron | 45.0% | |
| ! | GTCCTTTCTTATTCTGGGAG+GGG | + | tig0023872:77138-77157 | Msa1412220:intron | 45.0% |
| TTCCCCTCCCAGAATAAGAA+AGG | - | tig0023872:77143-77162 | None:intergenic | 45.0% | |
| TTTCGGTACCTGTTCGATGA+GGG | + | tig0023872:77424-77443 | Msa1412220:intron | 45.0% | |
| TGCTTGAATGCCTAATGAGC+AGG | + | tig0023872:78102-78121 | Msa1412220:intron | 45.0% | |
| !! | ATATAGTGGGCCTGCTCATT+AGG | - | tig0023872:78115-78134 | None:intergenic | 45.0% |
| ATGAGCAGGCCCACTATATT+TGG | + | tig0023872:78116-78135 | Msa1412220:intron | 45.0% | |
| ! | GTTTTCCATGGCTATGCCTA+AGG | - | tig0023872:78236-78255 | None:intergenic | 45.0% |
| !! | GACCCTTGCTTTTGTAATCC+TGG | + | tig0023872:78459-78478 | Msa1412220:three_prime_UTR | 45.0% |
| AGTATCATCCCTGTTTCCCT+TGG | + | tig0023872:78589-78608 | Msa1412220:three_prime_UTR | 45.0% | |
| AACACATCCTCCACTTCCAA+GGG | - | tig0023872:78608-78627 | None:intergenic | 45.0% | |
| AAACACATCCTCCACTTCCA+AGG | - | tig0023872:78609-78628 | None:intergenic | 45.0% | |
| AGTATGAACAAGGACCCGAT+GGG | - | tig0023872:78678-78697 | None:intergenic | 45.0% | |
| GATGTCATCGTGTTCGTAGT+TGG | + | tig0023872:78780-78799 | Msa1412220:three_prime_UTR | 45.0% | |
| !!! | TATAAATTTTTCATTAAAAA+AGG | - | tig0023872:75340-75359 | None:intergenic | 5.0% |
| !!! | TTTTAATGAAAAATTTATAT+TGG | + | tig0023872:75341-75360 | Msa1412220:intron | 5.0% |
| !! | TTTAATGAAAAATTTATATT+GGG | + | tig0023872:75342-75361 | Msa1412220:intron | 5.0% |
| !!! | TGGGGCTTTTGGTTTAGCCA+TGG | - | tig0023872:74745-74764 | None:intergenic | 50.0% |
| !!! | AGGTTTCGCTTTGGGGCTTT+TGG | - | tig0023872:74756-74775 | None:intergenic | 50.0% |
| GAGGGTTTGGATGGATCAGA+TGG | - | tig0023872:74929-74948 | None:intergenic | 50.0% | |
| TCCATCCAAACCCTCTTACG+TGG | + | tig0023872:74934-74953 | Msa1412220:CDS | 50.0% | |
| CTTTGCCACGTAAGAGGGTT+TGG | - | tig0023872:74942-74961 | None:intergenic | 50.0% | |
| GAATGAAACCTGTTCCTGCC+TGG | + | tig0023872:75656-75675 | Msa1412220:intron | 50.0% | |
| CCCCTTTGCATTGGAGAAGA+AGG | - | tig0023872:75723-75742 | None:intergenic | 50.0% | |
| CTTCGATGTCAAAGTGAGGC+AGG | + | tig0023872:75749-75768 | Msa1412220:intron | 50.0% | |
| AGTGAGGCAGGGTGAAGAAT+AGG | + | tig0023872:75761-75780 | Msa1412220:intron | 50.0% | |
| GTGAGGCAGGGTGAAGAATA+GGG | + | tig0023872:75762-75781 | Msa1412220:intron | 50.0% | |
| AGGGTGAAGAATAGGGCTTG+AGG | + | tig0023872:75769-75788 | Msa1412220:intron | 50.0% | |
| GGGTGAAGAATAGGGCTTGA+GGG | + | tig0023872:75770-75789 | Msa1412220:intron | 50.0% | |
| AGGGCTTGAGGGATTAAACC+TGG | + | tig0023872:75781-75800 | Msa1412220:intron | 50.0% | |
| GGGCTTGAGGGATTAAACCT+GGG | + | tig0023872:75782-75801 | Msa1412220:intron | 50.0% | |
| GGCTTGAGGGATTAAACCTG+GGG | + | tig0023872:75783-75802 | Msa1412220:intron | 50.0% | |
| TAAACCTGGGGTTATCCCCT+TGG | + | tig0023872:75795-75814 | Msa1412220:intron | 50.0% | |
| TAATCCAAGGGGATAACCCC+AGG | - | tig0023872:75802-75821 | None:intergenic | 50.0% | |
| TTTACAGCGGAGCTGAACTG+AGG | - | tig0023872:75876-75895 | None:intergenic | 50.0% | |
| GCTCCGCTGTAAACCTGATT+TGG | + | tig0023872:75883-75902 | Msa1412220:intron | 50.0% | |
| !! | AGAGTGCTGCGCTTCAACAA+TGG | + | tig0023872:75915-75934 | Msa1412220:intron | 50.0% |
| TTTACGGGACCTCGGAGTTA+AGG | - | tig0023872:76970-76989 | None:intergenic | 50.0% | |
| GTTTCGGTACCTGTTCGATG+AGG | + | tig0023872:77423-77442 | Msa1412220:intron | 50.0% | |
| CTTCTCCTTAGGCATAGCCA+TGG | + | tig0023872:78228-78247 | Msa1412220:intron | 50.0% | |
| AACATCGCTTCTACCTTCGG+CGG | - | tig0023872:78402-78421 | None:intergenic | 50.0% | |
| ! | AGTTTGTTCAGCTCCTACCC+AGG | - | tig0023872:78480-78499 | None:intergenic | 50.0% |
| ATCCCTGTTTCCCTTGGAAG+TGG | + | tig0023872:78595-78614 | Msa1412220:three_prime_UTR | 50.0% | |
| CTCCACTTCCAAGGGAAACA+GGG | - | tig0023872:78600-78619 | None:intergenic | 50.0% | |
| GTATGAACAAGGACCCGATG+GGG | - | tig0023872:78677-78696 | None:intergenic | 50.0% | |
| GAGTATGAACAAGGACCCGA+TGG | - | tig0023872:78679-78698 | None:intergenic | 50.0% | |
| GCCACGTAAGAGGGTTTGGA+TGG | - | tig0023872:74938-74957 | None:intergenic | 55.0% | |
| ! | GGGATCGAAGCTGATTCACG+AGG | + | tig0023872:74968-74987 | Msa1412220:CDS | 55.0% |
| GCGGAGCTGAACTGAGGATA+AGG | - | tig0023872:75870-75889 | None:intergenic | 55.0% | |
| GGCTGCAGTGACTGGTAAGT+TGG | + | tig0023872:76049-76068 | Msa1412220:intron | 55.0% | |
| AGAGTAGGTTTGGGGAGCAG+GGG | - | tig0023872:76439-76458 | None:intergenic | 55.0% | |
| GAGAGTAGGTTTGGGGAGCA+GGG | - | tig0023872:76440-76459 | None:intergenic | 55.0% | |
| ! | GTGCTACTAGAGTTGCCACC+AGG | - | tig0023872:77183-77202 | None:intergenic | 55.0% |
| TGGATACTAAACGCCGCCGA+AGG | + | tig0023872:78386-78405 | Msa1412220:CDS | 55.0% | |
| CCTCCACTTCCAAGGGAAAC+AGG | - | tig0023872:78601-78620 | None:intergenic | 55.0% | |
| CCTGTTTCCCTTGGAAGTGG+AGG | + | tig0023872:78598-78617 | Msa1412220:three_prime_UTR | 55.0% | |
| TACCGGCCGGAGGAGTCAAT+TGG | + | tig0023872:75022-75041 | Msa1412220:CDS | 60.0% | |
| ! | CACCAATTGACTCCTCCGGC+CGG | - | tig0023872:75027-75046 | None:intergenic | 60.0% |
| ! | CGGCCACCAATTGACTCCTC+CGG | - | tig0023872:75031-75050 | None:intergenic | 60.0% |
| ! | CGGAGGAGTCAATTGGTGGC+CGG | + | tig0023872:75029-75048 | Msa1412220:CDS | 60.0% |
| GGTGGCCGGAGACAGTTTCA+CGG | + | tig0023872:75043-75062 | Msa1412220:CDS | 60.0% | |
| CTCTGTATTCCGAGGCAGCC+AGG | - | tig0023872:75677-75696 | None:intergenic | 60.0% | |
| AGTGTGAGGGCTGCAGTGAC+TGG | + | tig0023872:76041-76060 | Msa1412220:CDS | 60.0% | |
| GACAGAAGCAGCGTGCCAGA+AGG | - | tig0023872:76387-76406 | None:intergenic | 60.0% | |
| GGAGAGTAGGTTTGGGGAGC+AGG | - | tig0023872:76441-76460 | None:intergenic | 60.0% | |
| CGTCCGGTGGTATTACCGGC+CGG | + | tig0023872:75009-75028 | Msa1412220:CDS | 65.0% | |
| CCTCCGGCCGGTAATACCAC+CGG | - | tig0023872:75015-75034 | None:intergenic | 65.0% | |
| CGGCCGGAGGAGTCAATTGG+TGG | + | tig0023872:75025-75044 | Msa1412220:CDS | 65.0% | |
| CTGTTCCTGCCTGGCTGCCT+CGG | + | tig0023872:75665-75684 | Msa1412220:intron | 65.0% | |
| GTATTCCGAGGCAGCCAGGC+AGG | - | tig0023872:75673-75692 | None:intergenic | 65.0% | |
| CCGGTGGTATTACCGGCCGG+AGG | + | tig0023872:75012-75031 | Msa1412220:CDS | 70.0% | |
| CGAGGCAGCCAGGCAGGAAC+AGG | - | tig0023872:75667-75686 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023872 | gene | 74461 | 78803 | 74461 | ID=Msa1412220;Name=Msa1412220 |
| tig0023872 | mRNA | 74461 | 78803 | 74461 | ID=Msa1412220-mRNA-1;Parent=Msa1412220;Name=Msa1412220-mRNA-1;_AED=0.20;_eAED=0.20;_QI=283|1|1|1|0.8|0.66|6|339|218 |
| tig0023872 | exon | 74461 | 74822 | 74461 | ID=Msa1412220-mRNA-1:exon:20471;Parent=Msa1412220-mRNA-1 |
| tig0023872 | exon | 74903 | 75248 | 74903 | ID=Msa1412220-mRNA-1:exon:20472;Parent=Msa1412220-mRNA-1 |
| tig0023872 | exon | 75994 | 76062 | 75994 | ID=Msa1412220-mRNA-1:exon:20473;Parent=Msa1412220-mRNA-1 |
| tig0023872 | exon | 77545 | 77680 | 77545 | ID=Msa1412220-mRNA-1:exon:20474;Parent=Msa1412220-mRNA-1 |
| tig0023872 | exon | 78385 | 78520 | 78385 | ID=Msa1412220-mRNA-1:exon:20475;Parent=Msa1412220-mRNA-1 |
| tig0023872 | exon | 78574 | 78803 | 78574 | ID=Msa1412220-mRNA-1:exon:20476;Parent=Msa1412220-mRNA-1 |
| tig0023872 | five_prime_UTR | 74461 | 74743 | 74461 | ID=Msa1412220-mRNA-1:five_prime_utr;Parent=Msa1412220-mRNA-1 |
| tig0023872 | CDS | 74744 | 74822 | 74744 | ID=Msa1412220-mRNA-1:cds;Parent=Msa1412220-mRNA-1 |
| tig0023872 | CDS | 74903 | 75248 | 74903 | ID=Msa1412220-mRNA-1:cds;Parent=Msa1412220-mRNA-1 |
| tig0023872 | CDS | 75994 | 76062 | 75994 | ID=Msa1412220-mRNA-1:cds;Parent=Msa1412220-mRNA-1 |
| tig0023872 | CDS | 77545 | 77680 | 77545 | ID=Msa1412220-mRNA-1:cds;Parent=Msa1412220-mRNA-1 |
| tig0023872 | CDS | 78385 | 78411 | 78385 | ID=Msa1412220-mRNA-1:cds;Parent=Msa1412220-mRNA-1 |
| tig0023872 | three_prime_UTR | 78412 | 78520 | 78412 | ID=Msa1412220-mRNA-1:three_prime_utr;Parent=Msa1412220-mRNA-1 |
| tig0023872 | three_prime_UTR | 78574 | 78803 | 78574 | ID=Msa1412220-mRNA-1:three_prime_utr;Parent=Msa1412220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
