Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460200 | XP_003603985.1 | 61.780 | 191 | 44 | 3 | 217 | 378 | 28 | 218 | 1.56e-68 | 225 |
| Msa1460200 | XP_003603985.1 | 98.104 | 211 | 2 | 1 | 1 | 209 | 1 | 211 | 7.78e-152 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460200 | sp|Q9FEN9|SHL_ARATH | 69.668 | 211 | 59 | 3 | 1 | 209 | 1 | 208 | 1.58e-107 | 318 |
| Msa1460200 | sp|Q9FEN9|SHL_ARATH | 49.020 | 204 | 72 | 5 | 203 | 375 | 10 | 212 | 2.95e-55 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460200 | G7J7R0 | 61.780 | 191 | 44 | 3 | 217 | 378 | 28 | 218 | 7.46e-69 | 225 |
| Msa1460200 | G7J7R0 | 98.104 | 211 | 2 | 1 | 1 | 209 | 1 | 211 | 3.71e-152 | 437 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1460200 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365720 | Msa1460200 | 0.929645 | 5.157965e-93 | -8.615850e-47 |
| Msa1412220 | Msa1460200 | 0.928647 | 2.148466e-92 | -8.615850e-47 |
| Msa1317810 | Msa1460200 | 0.803632 | 3.177940e-49 | -8.615850e-47 |
| Msa0386960 | Msa1460200 | 0.848699 | 5.189565e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460200 | MtrunA17_Chr3g0145031 | 98.104 | 211 | 2 | 1 | 1 | 209 | 1 | 211 | 7.15e-156 | 437 |
| Msa1460200 | MtrunA17_Chr3g0145031 | 61.780 | 191 | 44 | 3 | 217 | 378 | 28 | 218 | 1.44e-72 | 225 |
| Msa1460200 | MtrunA17_Chr3g0145041 | 78.125 | 192 | 17 | 2 | 212 | 378 | 5 | 196 | 3.66e-100 | 295 |
| Msa1460200 | MtrunA17_Chr3g0145041 | 68.912 | 193 | 54 | 2 | 19 | 209 | 1 | 189 | 6.28e-94 | 279 |
| Msa1460200 | MtrunA17_Chr2g0316511 | 66.509 | 212 | 65 | 4 | 1 | 209 | 1 | 209 | 1.81e-95 | 284 |
| Msa1460200 | MtrunA17_Chr2g0316511 | 45.550 | 191 | 75 | 4 | 217 | 378 | 26 | 216 | 9.96e-47 | 159 |
| Msa1460200 | MtrunA17_Chr2g0324381 | 50.000 | 192 | 86 | 6 | 1 | 188 | 10 | 195 | 1.05e-57 | 186 |
| Msa1460200 | MtrunA17_Chr2g0324381 | 42.515 | 167 | 65 | 5 | 218 | 354 | 34 | 199 | 1.69e-33 | 123 |
| Msa1460200 | MtrunA17_Chr5g0447451 | 44.961 | 129 | 59 | 6 | 74 | 190 | 15 | 143 | 4.48e-27 | 104 |
| Msa1460200 | MtrunA17_Chr2g0324361 | 51.000 | 100 | 43 | 4 | 27 | 124 | 12 | 107 | 4.54e-25 | 98.2 |
| Msa1460200 | MtrunA17_Chr2g0324361 | 47.959 | 98 | 43 | 4 | 217 | 309 | 13 | 107 | 5.47e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460200 | AT4G39100.1 | 69.668 | 211 | 59 | 3 | 1 | 209 | 1 | 208 | 1.61e-108 | 318 |
| Msa1460200 | AT4G39100.1 | 49.020 | 204 | 72 | 5 | 203 | 375 | 10 | 212 | 3.00e-56 | 184 |
| Msa1460200 | AT4G22140.2 | 65.877 | 211 | 66 | 4 | 2 | 209 | 10 | 217 | 1.18e-100 | 297 |
| Msa1460200 | AT4G22140.2 | 46.597 | 191 | 73 | 4 | 217 | 378 | 34 | 224 | 8.94e-52 | 172 |
| Msa1460200 | AT4G22140.1 | 65.877 | 211 | 66 | 4 | 2 | 209 | 10 | 217 | 2.04e-100 | 297 |
| Msa1460200 | AT4G22140.1 | 45.652 | 184 | 71 | 4 | 217 | 371 | 34 | 217 | 1.66e-47 | 161 |
| Msa1460200 | AT4G22140.3 | 65.877 | 211 | 66 | 4 | 2 | 209 | 10 | 217 | 2.04e-100 | 297 |
| Msa1460200 | AT4G22140.3 | 45.652 | 184 | 71 | 4 | 217 | 371 | 34 | 217 | 1.66e-47 | 161 |
| Msa1460200 | AT4G39100.2 | 75.758 | 165 | 36 | 2 | 1 | 163 | 1 | 163 | 8.10e-91 | 270 |
| Msa1460200 | AT4G39100.2 | 58.333 | 132 | 47 | 3 | 203 | 326 | 10 | 141 | 1.87e-44 | 151 |
| Msa1460200 | AT4G04260.2 | 57.921 | 202 | 74 | 5 | 28 | 225 | 9 | 203 | 3.86e-73 | 227 |
| Msa1460200 | AT4G04260.2 | 41.530 | 183 | 78 | 4 | 217 | 370 | 9 | 191 | 8.44e-42 | 145 |
| Msa1460200 | AT4G04260.1 | 56.853 | 197 | 74 | 5 | 33 | 225 | 1 | 190 | 6.19e-69 | 215 |
| Msa1460200 | AT4G04260.1 | 40.449 | 178 | 77 | 4 | 222 | 370 | 1 | 178 | 1.38e-38 | 137 |
| Msa1460200 | AT4G04260.3 | 69.492 | 118 | 33 | 2 | 25 | 140 | 24 | 140 | 4.96e-52 | 170 |
| Msa1460200 | AT4G04260.3 | 52.800 | 125 | 50 | 3 | 206 | 325 | 20 | 140 | 6.20e-36 | 128 |
Find 120 sgRNAs with CRISPR-Local
Find 690 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAGGAATACCTTTGTATT+TGG | 0.149988 | tig0040749:+5980 | None:intergenic |
| ATGACTCTAGGTTTCGCTTT+GGG | 0.256713 | tig0040749:+14627 | None:intergenic |
| AGAGAAGTAGAGGGGTTTGT+TGG | 0.281029 | tig0040749:+14792 | None:intergenic |
| AAAAGAAGGTTATGGCAATT+TGG | 0.283943 | tig0040749:+14762 | None:intergenic |
| AGGTTTCGCTTTGGGGCTTT+TGG | 0.301619 | tig0040749:+14635 | None:intergenic |
| AATGAAGTTGTCAATTCTTT+CGG | 0.316759 | tig0040749:+6066 | None:intergenic |
| CTTTGCCACGTAAGAGGGTT+TGG | 0.340256 | tig0040749:+14449 | None:intergenic |
| GAAGGAAAGTGTATTGTTCA+TGG | 0.347757 | tig0040749:-14267 | Msa1460200:CDS |
| TTAGGAATACCTTTGTATTT+GGG | 0.355673 | tig0040749:+5981 | None:intergenic |
| AAAGAAGTGGTCAAGTCTTT+CGG | 0.363321 | tig0040749:+11815 | None:intergenic |
| ACTCACACTGCAACTCTATC+AGG | 0.365443 | tig0040749:+14156 | None:intergenic |
| GAAAAGAAAGATTGAATTGA+AGG | 0.367791 | tig0040749:+14726 | None:intergenic |
| AAGGACCCGATGAGGATATA+TGG | 0.371664 | tig0040749:+4934 | None:intergenic |
| ACCATCACTTTCATCTTTGA+CGG | 0.371838 | tig0040749:+5133 | None:intergenic |
| TTAACGTCCGGTGGTATTAC+CGG | 0.372519 | tig0040749:-14383 | Msa1460200:CDS |
| AAAATGCACTGTTCACAGTT+TGG | 0.374580 | tig0040749:-7701 | Msa1460200:CDS |
| CACTGAACCATCAGATCATC+AGG | 0.376018 | tig0040749:+13372 | None:intergenic |
| TGTGAAAGTTGTTCCGTTGA+AGG | 0.381340 | tig0040749:-11792 | Msa1460200:CDS |
| GAAAGTCTTAATGTGTATAC+TGG | 0.395769 | tig0040749:+4862 | None:intergenic |
| ACTCACACTTGAACTATATC+AGG | 0.399463 | tig0040749:+7595 | None:intergenic |
| TGTTGGTATCCACGGTTTAG+AGG | 0.405406 | tig0040749:+7888 | None:intergenic |
| TTCGTGTCCGTTGGTACTAC+TGG | 0.414838 | tig0040749:-7822 | Msa1460200:CDS |
| CATCAGATCATCAGGGTTGT+AGG | 0.418034 | tig0040749:+13380 | None:intergenic |
| ATCAAAGAGTTTGACTTTCG+AGG | 0.418489 | tig0040749:+14898 | None:intergenic |
| GGTGTACATTAGATATATAA+TGG | 0.440667 | tig0040749:-5113 | Msa1460200:three_prime_UTR |
| TTCGATCTTTGCCACGTAAG+AGG | 0.444854 | tig0040749:+14443 | None:intergenic |
| TATGACTCTAGGTTTCGCTT+TGG | 0.453882 | tig0040749:+14626 | None:intergenic |
| TTGAACTACAATTCCGCTAC+TGG | 0.456893 | tig0040749:-7628 | Msa1460200:CDS |
| ATAGAAATAAAAGAAGGTTA+TGG | 0.462193 | tig0040749:+14754 | None:intergenic |
| CAAACTCTTTGATAGTAAGT+TGG | 0.472062 | tig0040749:-14888 | Msa1460200:five_prime_UTR |
| TTTGAGTACAATTCTGCTAC+TGG | 0.478917 | tig0040749:-14189 | Msa1460200:CDS |
| TGGTAGTTAAAGAGAAGTAG+AGG | 0.479471 | tig0040749:+14782 | None:intergenic |
| GTTTCTCCATATATCCTCAT+CGG | 0.495271 | tig0040749:-4940 | Msa1460200:three_prime_UTR |
| CAGAGTGCTGATACAATTGA+AGG | 0.496733 | tig0040749:-14285 | Msa1460200:CDS |
| AGTGTGAGGGCTGCAGTGAC+TGG | 0.500549 | tig0040749:-13353 | Msa1460200:intron |
| TCGATCTTTGCCACGTAAGA+GGG | 0.507398 | tig0040749:+14444 | None:intergenic |
| TGACTCTAGGTTTCGCTTTG+GGG | 0.508250 | tig0040749:+14628 | None:intergenic |
| GCCACGTAAGAGGGTTTGGA+TGG | 0.509773 | tig0040749:+14453 | None:intergenic |
| GAGACAGTTTCACGGTTCAA+AGG | 0.514600 | tig0040749:-14337 | Msa1460200:CDS |
| GATTCTCTATCTATCCCCAT+CGG | 0.517084 | tig0040749:-10737 | Msa1460200:CDS |
| GGTAGTTAAAGAGAAGTAGA+GGG | 0.520077 | tig0040749:+14783 | None:intergenic |
| TACCGGCCGGAGGAGTCAAT+TGG | 0.521187 | tig0040749:-14366 | Msa1460200:CDS |
| CAAGAGACGTTCGTGTCCGT+TGG | 0.522823 | tig0040749:-7831 | Msa1460200:CDS |
| TTTCTCCATATATCCTCATC+GGG | 0.523027 | tig0040749:-4939 | Msa1460200:three_prime_UTR |
| AACAAATCTGTCACAATCAA+AGG | 0.523901 | tig0040749:-14587 | Msa1460200:intron |
| ATCAGATCATCAGGGTTGTA+GGG | 0.525800 | tig0040749:+13381 | None:intergenic |
| ATCACTGTTTCCCTAGGTAG+TGG | 0.526395 | tig0040749:-5005 | Msa1460200:three_prime_UTR |
| CGACCCTTCTTTGTCTCCTC+CGG | 0.527955 | tig0040749:+7799 | None:intergenic |
| TACATGAAGCTTGATGTTGT+TGG | 0.528797 | tig0040749:-7673 | Msa1460200:CDS |
| GCCACATATGTTGGTATCCA+CGG | 0.537762 | tig0040749:+7880 | None:intergenic |
| TGCTTTGTCTTTGAGTGGCA+TGG | 0.540617 | tig0040749:+14859 | None:intergenic |
| CGGCCACCAATTGACTCCTC+CGG | 0.542045 | tig0040749:+14360 | None:intergenic |
| AAACACATCCTCCACTACCT+AGG | 0.542451 | tig0040749:+4994 | None:intergenic |
| GAGAAAATAGAAATAAAAGA+AGG | 0.542861 | tig0040749:+14748 | None:intergenic |
| CTACAACCCTGATGATCTGA+TGG | 0.544719 | tig0040749:-13379 | Msa1460200:CDS |
| TGATCTGATGGTTCAGTGTG+AGG | 0.546259 | tig0040749:-13367 | Msa1460200:CDS |
| ATTCTCTATCTATCCCCATC+GGG | 0.547443 | tig0040749:-10736 | Msa1460200:intron |
| CAACTGCCAACACGATTCAC+TGG | 0.547820 | tig0040749:+4833 | None:intergenic |
| TACATTAGATATATAATGGA+CGG | 0.550351 | tig0040749:-5109 | Msa1460200:three_prime_UTR |
| ACCAAGGATTTGAAAAGCTA+GGG | 0.551461 | tig0040749:+5084 | None:intergenic |
| TACCAAGGATTTGAAAAGCT+AGG | 0.554541 | tig0040749:+5083 | None:intergenic |
| CGGCCGGAGGAGTCAATTGG+TGG | 0.557866 | tig0040749:-14363 | Msa1460200:CDS |
| GAGGGTTTGGATGGATCAGA+TGG | 0.563022 | tig0040749:+14462 | None:intergenic |
| TACACTAAGCTTGATGCTGT+TGG | 0.564424 | tig0040749:-14234 | Msa1460200:CDS |
| AGTTTATTCAGCTCCTACCA+AGG | 0.567083 | tig0040749:+5068 | None:intergenic |
| CGGAGGAGTCAATTGGTGGC+CGG | 0.567621 | tig0040749:-14359 | Msa1460200:CDS |
| GTTTGACTGAGTATGACTCT+AGG | 0.568800 | tig0040749:+14615 | None:intergenic |
| CAGTGAATCGTGTTGGCAGT+TGG | 0.569218 | tig0040749:-4832 | Msa1460200:three_prime_UTR |
| AACACATCCTCCACTACCTA+GGG | 0.569275 | tig0040749:+4995 | None:intergenic |
| GTAGTTAAAGAGAAGTAGAG+GGG | 0.569534 | tig0040749:+14784 | None:intergenic |
| ACCGTCATGTCTATACAAGC+AGG | 0.569799 | tig0040749:+6097 | None:intergenic |
| AAGGGTCGGCGTCATTTCCA+TGG | 0.570085 | tig0040749:-7784 | Msa1460200:CDS |
| GGTGGCCGGAGACAGTTTCA+CGG | 0.570440 | tig0040749:-14345 | Msa1460200:CDS |
| CTGGCCGGAGGAGACAAAGA+AGG | 0.572097 | tig0040749:-7803 | Msa1460200:CDS |
| TAAAATGCTTTGTCTTTGAG+TGG | 0.576034 | tig0040749:+14854 | None:intergenic |
| ACCGTGGATACCAACATATG+TGG | 0.579459 | tig0040749:-7881 | Msa1460200:CDS |
| TGTCCGTTGGTACTACTGGC+CGG | 0.580901 | tig0040749:-7818 | Msa1460200:CDS |
| AGCTGAATAAACTCTGACAA+TGG | 0.581923 | tig0040749:-5058 | Msa1460200:three_prime_UTR |
| ACAGTCATGTCTATACAAGC+AGG | 0.584679 | tig0040749:+11846 | None:intergenic |
| CACCAATTGACTCCTCCGGC+CGG | 0.585767 | tig0040749:+14364 | None:intergenic |
| TCTTACGTGGCAAAGATCGA+AGG | 0.586509 | tig0040749:-14441 | Msa1460200:CDS |
| TCGATCATAGCCACATATGT+TGG | 0.588140 | tig0040749:+7871 | None:intergenic |
| ACATTAGATATATAATGGAC+GGG | 0.589985 | tig0040749:-5108 | Msa1460200:three_prime_UTR |
| GTAACCATCACTGTTTCCCT+AGG | 0.592283 | tig0040749:-5011 | Msa1460200:three_prime_UTR |
| AACAACTTTCACAAAAGAAG+TGG | 0.593717 | tig0040749:+11802 | None:intergenic |
| GCGTCATTTCCATGGCTCAA+AGG | 0.593809 | tig0040749:-7776 | Msa1460200:CDS |
| TTGAACCGTGAAACTGTCTC+CGG | 0.596615 | tig0040749:+14340 | None:intergenic |
| GATCTGATGGTTCAGTGTGA+GGG | 0.605136 | tig0040749:-13366 | Msa1460200:CDS |
| CGTGTGCTTTACACATCACA+CGG | 0.608973 | tig0040749:+14825 | None:intergenic |
| CAAAAGTCTGAGTATGAACA+AGG | 0.609731 | tig0040749:+4915 | None:intergenic |
| TATTCACCAGTGAATCGTGT+TGG | 0.610674 | tig0040749:-4839 | Msa1460200:three_prime_UTR |
| CGGAGGAGACAAAGAAGGGT+CGG | 0.615656 | tig0040749:-7798 | Msa1460200:CDS |
| CCTCCGGCCGGTAATACCAC+CGG | 0.617818 | tig0040749:+14376 | None:intergenic |
| TCCTGCTTGTATAGACATGA+CGG | 0.620123 | tig0040749:-6098 | Msa1460200:CDS |
| ACTACCTAGGGAAACAGTGA+TGG | 0.626362 | tig0040749:+5007 | None:intergenic |
| CTAACGTTAAAGTTAACGTC+CGG | 0.628228 | tig0040749:-14395 | Msa1460200:CDS |
| ACTGTTTCCCTAGGTAGTGG+AGG | 0.634735 | tig0040749:-5002 | Msa1460200:three_prime_UTR |
| TACAAGACTCGCAGATACAA+AGG | 0.635448 | tig0040749:-11739 | Msa1460200:intron |
| TGGCCGGAGGAGACAAAGAA+GGG | 0.641254 | tig0040749:-7802 | Msa1460200:CDS |
| AGTATGAACAAGGACCCGAT+GGG | 0.641512 | tig0040749:+10722 | None:intergenic |
| CAGAGTGTTGATACAATCGA+AGG | 0.642499 | tig0040749:-7724 | Msa1460200:CDS |
| AGGAGTGAGAGCACCAGTAG+CGG | 0.642633 | tig0040749:+7615 | None:intergenic |
| CGTCCGGTGGTATTACCGGC+CGG | 0.645283 | tig0040749:-14379 | Msa1460200:CDS |
| CTTACGTGGCAAAGATCGAA+GGG | 0.647189 | tig0040749:-14440 | Msa1460200:CDS |
| GCCGTCAAAGATGAAAGTGA+TGG | 0.650227 | tig0040749:-5134 | Msa1460200:exon |
| CCTCCGGCCAGTAGTACCAA+CGG | 0.658998 | tig0040749:+7815 | None:intergenic |
| TGCAAGACTCCCAAATACAA+AGG | 0.662219 | tig0040749:-5990 | Msa1460200:intron |
| AACACAACACAACACAACCA+TGG | 0.662889 | tig0040749:-14663 | Msa1460200:exon |
| TCCATCCAAACCCTCTTACG+TGG | 0.664323 | tig0040749:-14454 | Msa1460200:CDS |
| CCGGTGGTATTACCGGCCGG+AGG | 0.671639 | tig0040749:-14376 | Msa1460200:CDS |
| ACGTTAAAGTTAACGTCCGG+TGG | 0.681208 | tig0040749:-14392 | Msa1460200:CDS |
| TTGTATAGACATGACTGTGG+AGG | 0.686994 | tig0040749:-11841 | Msa1460200:CDS |
| GTATGAACAAGGACCCGATG+AGG | 0.693701 | tig0040749:+4926 | None:intergenic |
| GGGATCGAAGCTGATTCACG+AGG | 0.707404 | tig0040749:-14420 | Msa1460200:CDS |
| ACTGAACCATCAGATCATCA+GGG | 0.710984 | tig0040749:+13373 | None:intergenic |
| GCATGCGTTCCTCTAAACCG+TGG | 0.713047 | tig0040749:-7897 | Msa1460200:CDS |
| GTATGAACAAGGACCCGATG+GGG | 0.713752 | tig0040749:+10723 | None:intergenic |
| CCGTTGGTACTACTGGCCGG+AGG | 0.722355 | tig0040749:-7815 | Msa1460200:CDS |
| TGCTTGTATAGACATGACGG+TGG | 0.750089 | tig0040749:-6095 | Msa1460200:CDS |
| TGCTTGTATAGACATGACTG+TGG | 0.776325 | tig0040749:-11844 | Msa1460200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAATTTAGATTATGTTT+TGG | - | tig0040749:5761-5780 | Msa1460200:intron | 10.0% |
| !!! | ATTTTATTACTTACTTTTAT+TGG | - | tig0040749:7700-7719 | Msa1460200:CDS | 10.0% |
| !! | TCTTTATAATAACATAATAA+AGG | + | tig0040749:8520-8539 | None:intergenic | 10.0% |
| !! | AAAATTAATGTGAAATTAAA+AGG | - | tig0040749:9180-9199 | Msa1460200:intron | 10.0% |
| !! | AAATTAATGTGAAATTAAAA+GGG | - | tig0040749:9181-9200 | Msa1460200:intron | 10.0% |
| !! | TTAAGATATACTTATAATAA+AGG | - | tig0040749:9786-9805 | Msa1460200:intron | 10.0% |
| !!! | ATTTTTGTTTATATTAATGA+CGG | + | tig0040749:10586-10605 | None:intergenic | 10.0% |
| !!! | CAAAAAAAAATTATAGTTTT+TGG | - | tig0040749:11088-11107 | Msa1460200:intron | 10.0% |
| !!! | GAAAAAAAAATTATAGTTTT+TGG | - | tig0040749:11179-11198 | Msa1460200:intron | 10.0% |
| !!! | CAAAAAAAAATTATAGTTTT+TGG | - | tig0040749:11088-11107 | Msa1460200:intron | 10.0% |
| !!! | AAAACTATAATTTTTTTTTG+CGG | - | tig0040749:11333-11352 | Msa1460200:intron | 10.0% |
| !!! | GTAAAAAAAATTATAGTTTT+TGG | + | tig0040749:11393-11412 | None:intergenic | 10.0% |
| !!! | AAAACTATAATTTTTTTTAC+AGG | - | tig0040749:11393-11412 | Msa1460200:intron | 10.0% |
| !!! | AAACTATAATTTTTTTTACA+GGG | - | tig0040749:11394-11413 | Msa1460200:intron | 10.0% |
| !!! | AAACTATAATTTTTTTTTAC+AGG | - | tig0040749:11453-11472 | Msa1460200:intron | 10.0% |
| !!! | AACTATAATTTTTTTTTACA+GGG | - | tig0040749:11454-11473 | Msa1460200:intron | 10.0% |
| !! | TATGGTTATTATTTAATTAA+GGG | + | tig0040749:13266-13285 | None:intergenic | 10.0% |
| !!! | AAATTTTTCTTCTAAATAAA+AGG | - | tig0040749:14541-14560 | Msa1460200:intron | 10.0% |
| !!! | TTTTTTTAAAATGACAAAAG+TGG | + | tig0040749:5927-5946 | None:intergenic | 15.0% |
| !!! | AAACAATAATAATTCTAGTT+AGG | - | tig0040749:7046-7065 | Msa1460200:intron | 15.0% |
| !! | CCATTTATATTCATTTAAAT+AGG | + | tig0040749:7097-7116 | None:intergenic | 15.0% |
| !! | CCTATTTAAATGAATATAAA+TGG | - | tig0040749:7094-7113 | Msa1460200:intron | 15.0% |
| !! | TATTTATAAACCATGATAAA+TGG | - | tig0040749:7745-7764 | Msa1460200:intron | 15.0% |
| !!! | GTAATTTTACTAATCAAATT+TGG | + | tig0040749:9977-9996 | None:intergenic | 15.0% |
| !!! | TTTTACACTATTTTTTGTTA+AGG | - | tig0040749:10161-10180 | Msa1460200:intron | 15.0% |
| !!! | TTTTTGATTGATTCATTAAA+TGG | - | tig0040749:10611-10630 | Msa1460200:intron | 15.0% |
| !!! | AACTATAATTTTTTTTTGCA+GGG | + | tig0040749:11086-11105 | None:intergenic | 15.0% |
| !!! | AAACTATAATTTTTTTTTGC+AGG | + | tig0040749:11334-11353 | None:intergenic | 15.0% |
| !!! | AACTATAATTTTTTTTTCCA+GGG | + | tig0040749:11177-11196 | None:intergenic | 15.0% |
| !!! | AAACTATAATTTTTTTTTCC+AGG | + | tig0040749:11178-11197 | None:intergenic | 15.0% |
| !!! | AACTATAATTTTTTTTTGCA+GGG | + | tig0040749:11086-11105 | None:intergenic | 15.0% |
| !!! | AAACTATAATTTTTTTTTGC+AGG | + | tig0040749:11334-11353 | None:intergenic | 15.0% |
| !!! | CAAAAATAAAAAATTTTGCA+GGG | + | tig0040749:11266-11285 | None:intergenic | 15.0% |
| !!! | AAACTATAATTTTTTTTTGC+GGG | - | tig0040749:11334-11353 | Msa1460200:intron | 15.0% |
| !! | AATAATAGGAAAATATGTAA+AGG | + | tig0040749:12193-12212 | None:intergenic | 15.0% |
| !! | ATTGTAAAAAATAAAAGGAA+AGG | - | tig0040749:12727-12746 | Msa1460200:intron | 15.0% |
| !! | ATAATTGAAATTCATTTGAA+CGG | - | tig0040749:12918-12937 | Msa1460200:intron | 15.0% |
| !!! | ATTTTTTTTGACAAAATACA+CGG | - | tig0040749:13048-13067 | Msa1460200:intron | 15.0% |
| !! | CAAATATAGAAAAAACTTAT+TGG | - | tig0040749:13123-13142 | Msa1460200:intron | 15.0% |
| !! | CTATGGTTATTATTTAATTA+AGG | + | tig0040749:13267-13286 | None:intergenic | 15.0% |
| !!! | GCAAATAAACTAATTTTTTA+TGG | + | tig0040749:13506-13525 | None:intergenic | 15.0% |
| !! | TATTCTTATTCAAAATACAA+AGG | + | tig0040749:14370-14389 | None:intergenic | 15.0% |
| !! | TATTTAGAAGAAAAATTTAC+AGG | + | tig0040749:14539-14558 | None:intergenic | 15.0% |
| !!! | ATTGATGTTTATATTTTGTT+TGG | - | tig0040749:14576-14595 | Msa1460200:intron | 15.0% |
| !! | ATAGAAATAAAAGAAGGTTA+TGG | + | tig0040749:5003-5022 | None:intergenic | 20.0% |
| !! | GAGAAAATAGAAATAAAAGA+AGG | + | tig0040749:5009-5028 | None:intergenic | 20.0% |
| !!! | TAAAGATATGATTTTTGTGT+TGG | - | tig0040749:5666-5685 | Msa1460200:intron | 20.0% |
| !! | TGTTATTGCAAAATAGAATT+TGG | - | tig0040749:5843-5862 | Msa1460200:intron | 20.0% |
| !! | GTTATTGCAAAATAGAATTT+GGG | - | tig0040749:5844-5863 | Msa1460200:intron | 20.0% |
| !!! | AGAAAACAAGTATTTTAAGT+CGG | - | tig0040749:6559-6578 | Msa1460200:intron | 20.0% |
| !! | ATCAAAAGAAACATAATTCT+CGG | + | tig0040749:6916-6935 | None:intergenic | 20.0% |
| !! | ATTATACTTGTAATTGTTCA+TGG | - | tig0040749:6934-6953 | Msa1460200:intron | 20.0% |
| !!! | AGACAATAATAATTCTAGTT+AGG | - | tig0040749:6983-7002 | Msa1460200:intron | 20.0% |
| !! | AAATATGCTCAAACAAATTA+AGG | - | tig0040749:7369-7388 | Msa1460200:intron | 20.0% |
| !! | AATATGCTCAAACAAATTAA+GGG | - | tig0040749:7370-7389 | Msa1460200:intron | 20.0% |
| !! | AAAATCTATCTTTCTATCTA+AGG | + | tig0040749:7595-7614 | None:intergenic | 20.0% |
| !! | AATAAACAGTTTAACAAGTT+GGG | + | tig0040749:7645-7664 | None:intergenic | 20.0% |
| !! | TAATAAACAGTTTAACAAGT+TGG | + | tig0040749:7646-7665 | None:intergenic | 20.0% |
| !! | AAGTAATAAAATGTCATACA+AGG | + | tig0040749:7692-7711 | None:intergenic | 20.0% |
| !! | TTCTATATGAGAATATAACT+AGG | - | tig0040749:8204-8223 | Msa1460200:intron | 20.0% |
| !! | ACATAAATTAACCCAAAAAA+AGG | + | tig0040749:8347-8366 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTGTAAATTTTTC+TGG | - | tig0040749:8665-8684 | Msa1460200:intron | 20.0% |
| !!! | ATTAGTGCTTATATTTTGTT+TGG | - | tig0040749:8710-8729 | Msa1460200:intron | 20.0% |
| !!! | TATATTTTGTTTGGTATTGT+AGG | - | tig0040749:8719-8738 | Msa1460200:intron | 20.0% |
| !!! | ATTTCACATTAATTTTAGTG+TGG | + | tig0040749:9176-9195 | None:intergenic | 20.0% |
| !!! | TATAAATGGAGTATCAAATA+TGG | + | tig0040749:9239-9258 | None:intergenic | 20.0% |
| !! | ATTGCAATTACTTGTATAAA+TGG | + | tig0040749:9253-9272 | None:intergenic | 20.0% |
| !! | AAATCAGATATTAACTTAGA+TGG | + | tig0040749:9322-9341 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGTTTTTCTGTC+TGG | + | tig0040749:9504-9523 | None:intergenic | 20.0% |
| !! | GAAAAACAAAAAAAATCCTT+TGG | - | tig0040749:9508-9527 | Msa1460200:intron | 20.0% |
| !!! | GAATTCAAATCATTTTATAC+AGG | + | tig0040749:9879-9898 | None:intergenic | 20.0% |
| !! | TTCAGTTTAGGTAAAATTTA+AGG | - | tig0040749:10104-10123 | Msa1460200:intron | 20.0% |
| !!! | ATGACTTATAAATATCGATT+AGG | - | tig0040749:10763-10782 | Msa1460200:intron | 20.0% |
| !!! | TTGCAAAACGTTTTTTTTAA+AGG | - | tig0040749:10875-10894 | Msa1460200:intron | 20.0% |
| !!! | TTTTTTTATAATTGGGTCAA+CGG | - | tig0040749:10964-10983 | Msa1460200:intron | 20.0% |
| !!! | CCAAAAATAAAAAATTTTGC+AGG | + | tig0040749:11267-11286 | None:intergenic | 20.0% |
| !!! | CCTGCAAAATTTTTTATTTT+TGG | - | tig0040749:11264-11283 | Msa1460200:intron | 20.0% |
| !!! | AACTATAATTTTTTTTTGCG+GGG | - | tig0040749:11335-11354 | Msa1460200:intron | 20.0% |
| !!! | TTATATTTTGTTTGTTTCAG+AGG | - | tig0040749:11822-11841 | Msa1460200:CDS | 20.0% |
| !!! | TATATTTTGTTTGTTTCAGA+GGG | - | tig0040749:11823-11842 | Msa1460200:CDS | 20.0% |
| !!! | TTCATTGCTCTAAAATTTAA+TGG | - | tig0040749:12309-12328 | Msa1460200:intron | 20.0% |
| !!! | CATTTCAATGATGTTTTATT+TGG | - | tig0040749:12780-12799 | Msa1460200:intron | 20.0% |
| !! | TAATTGAAATTCATTTGAAC+GGG | - | tig0040749:12919-12938 | Msa1460200:intron | 20.0% |
| !!! | AAAATACACGGATTAATTAA+AGG | - | tig0040749:13060-13079 | Msa1460200:intron | 20.0% |
| !!! | AAATACACGGATTAATTAAA+GGG | - | tig0040749:13061-13080 | Msa1460200:intron | 20.0% |
| !! | AGATTACATTCACATTATAA+AGG | + | tig0040749:13607-13626 | None:intergenic | 20.0% |
| !! | ATTAACTCAATCATACAAAA+CGG | + | tig0040749:14344-14363 | None:intergenic | 20.0% |
| !!! | TATATTTTGTTTGGTATTGT+AGG | - | tig0040749:8719-8738 | Msa1460200:intron | 20.0% |
| !!! | TACATTAGATATATAATGGA+CGG | - | tig0040749:14645-14664 | Msa1460200:CDS | 20.0% |
| ! | GAAAAGAAAGATTGAATTGA+AGG | + | tig0040749:5031-5050 | None:intergenic | 25.0% |
| ! | AAAGAGAAAGAGAAAATTAG+AGG | + | tig0040749:5222-5241 | None:intergenic | 25.0% |
| !! | TATGATTTTTGTGTTGGAAA+TGG | - | tig0040749:5672-5691 | Msa1460200:intron | 25.0% |
| !!! | TTTTGGTTAATGACAACTTT+AGG | - | tig0040749:5778-5797 | Msa1460200:intron | 25.0% |
| ! | AAGGAGCAAATAATAGATTT+CGG | + | tig0040749:5994-6013 | None:intergenic | 25.0% |
| ! | TCAATCATAACATAATCCAA+GGG | + | tig0040749:6180-6199 | None:intergenic | 25.0% |
| ! | TTCAATCATAACATAATCCA+AGG | + | tig0040749:6181-6200 | None:intergenic | 25.0% |
| !!! | TATGATTGAAGCATTTTGAT+TGG | - | tig0040749:6191-6210 | Msa1460200:intron | 25.0% |
| !! | TTCATTGCTCAAATTTTTCA+TGG | - | tig0040749:6328-6347 | Msa1460200:intron | 25.0% |
| !! | AACTCTTTCCTATGATATTT+TGG | - | tig0040749:6620-6639 | Msa1460200:intron | 25.0% |
| ! | TCAAAAGAAACATAATTCTC+GGG | + | tig0040749:6915-6934 | None:intergenic | 25.0% |
| !! | CAATAATAATTCTAGTTAGG+TGG | - | tig0040749:6986-7005 | Msa1460200:intron | 25.0% |
| !! | TAATTCTAGTTAGGTGATTA+TGG | - | tig0040749:7055-7074 | Msa1460200:intron | 25.0% |
| ! | TTCATTTAAATAGGCTAACT+GGG | + | tig0040749:7088-7107 | None:intergenic | 25.0% |
| ! | ATTCATTTAAATAGGCTAAC+TGG | + | tig0040749:7089-7108 | None:intergenic | 25.0% |
| ! | ACTACGAATTGAATATATGA+TGG | - | tig0040749:7134-7153 | Msa1460200:intron | 25.0% |
| ! | ATTGAACAAATTAACGTAGT+TGG | - | tig0040749:7173-7192 | Msa1460200:intron | 25.0% |
| ! | ATGCTTAAAATTCACTTGAA+TGG | - | tig0040749:7280-7299 | Msa1460200:intron | 25.0% |
| ! | TGCTTAAAATTCACTTGAAT+GGG | - | tig0040749:7281-7300 | Msa1460200:intron | 25.0% |
| !! | GAAGAGGATTAATTCTTTTT+GGG | - | tig0040749:7466-7485 | Msa1460200:intron | 25.0% |
| !! | AAGAGGATTAATTCTTTTTG+GGG | - | tig0040749:7467-7486 | Msa1460200:intron | 25.0% |
| !! | CAAATCTTTTCCATTTATCA+TGG | + | tig0040749:7758-7777 | None:intergenic | 25.0% |
| ! | TGATAAATGGAAAAGATTTG+AGG | - | tig0040749:7758-7777 | Msa1460200:CDS | 25.0% |
| ! | AAGCATAATATTTGTGATTC+AGG | - | tig0040749:7879-7898 | Msa1460200:CDS | 25.0% |
| ! | AAGATATCAAAGATCTTAAG+TGG | + | tig0040749:8117-8136 | None:intergenic | 25.0% |
| ! | TCTAATAATACATCTTACAC+AGG | + | tig0040749:8150-8169 | None:intergenic | 25.0% |
| !!! | AGATTATCTGTTTTTAGACT+TGG | - | tig0040749:8167-8186 | Msa1460200:intron | 25.0% |
| ! | TAAATTAACCCAAAAAAAGG+TGG | + | tig0040749:8344-8363 | None:intergenic | 25.0% |
| ! | GGTTAATTTATGTTTCTTCA+AGG | - | tig0040749:8354-8373 | Msa1460200:intron | 25.0% |
| !! | TCAAGGTTAATGCTAATTTT+AGG | - | tig0040749:8371-8390 | Msa1460200:intron | 25.0% |
| ! | AAATGTAGACCAAATATAGT+GGG | + | tig0040749:8484-8503 | None:intergenic | 25.0% |
| ! | AAAATGTAGACCAAATATAG+TGG | + | tig0040749:8485-8504 | None:intergenic | 25.0% |
| ! | CTAATTTAAAAGTCTGTCAA+TGG | - | tig0040749:8919-8938 | Msa1460200:intron | 25.0% |
| !!! | TTTTTGAGAATCAAACAAGT+TGG | - | tig0040749:9290-9309 | Msa1460200:intron | 25.0% |
| !!! | TTTTGAGAATCAAACAAGTT+GGG | - | tig0040749:9291-9310 | Msa1460200:intron | 25.0% |
| ! | ATATTCCAGATAAAACATGT+CGG | + | tig0040749:9476-9495 | None:intergenic | 25.0% |
| !! | AAAATATACAGTTTTGCCAA+AGG | + | tig0040749:9527-9546 | None:intergenic | 25.0% |
| ! | GTAATGAAAAAGTTAAGATG+AGG | + | tig0040749:9643-9662 | None:intergenic | 25.0% |
| ! | TACATATGCTAACACAAAAA+TGG | + | tig0040749:10288-10307 | None:intergenic | 25.0% |
| !! | AGTTGTAATGAAAACTGTTT+TGG | - | tig0040749:10332-10351 | Msa1460200:intron | 25.0% |
| !! | TTGTTTATATTAATGACGGA+GGG | + | tig0040749:10582-10601 | None:intergenic | 25.0% |
| ! | TTTGTTTATATTAATGACGG+AGG | + | tig0040749:10583-10602 | None:intergenic | 25.0% |
| !! | GACAATAGTTAACTCTATTT+TGG | - | tig0040749:10832-10851 | Msa1460200:intron | 25.0% |
| !!! | TCTTTTGTGTCAGTTTTTTT+TGG | - | tig0040749:10915-10934 | Msa1460200:intron | 25.0% |
| !! | TCAAAGATGTTGAACTTTTT+GGG | - | tig0040749:11011-11030 | Msa1460200:intron | 25.0% |
| ! | ACAAAAAGTTGGCTAAAATA+TGG | + | tig0040749:11518-11537 | None:intergenic | 25.0% |
| !!! | AGCCAACTTTTTGTTATAAT+TGG | - | tig0040749:11524-11543 | Msa1460200:intron | 25.0% |
| !!! | GCCAACTTTTTGTTATAATT+GGG | - | tig0040749:11525-11544 | Msa1460200:intron | 25.0% |
| ! | ACCCAATTATAACAAAAAGT+TGG | + | tig0040749:11529-11548 | None:intergenic | 25.0% |
| ! | AACTTGATTAGAACTTACTA+CGG | + | tig0040749:11712-11731 | None:intergenic | 25.0% |
| !! | AACTTAGAGAGTGTAATAAT+AGG | + | tig0040749:12207-12226 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTACAATGAAGA+AGG | - | tig0040749:12250-12269 | Msa1460200:intron | 25.0% |
| ! | TTTCTGTGTAATTATTTCAG+TGG | - | tig0040749:12989-13008 | Msa1460200:intron | 25.0% |
| !! | TAGAGAATCTTTCTTCTTTT+AGG | - | tig0040749:13202-13221 | Msa1460200:intron | 25.0% |
| !!! | ATTTTTTATGGTTTGTGAAG+AGG | + | tig0040749:13494-13513 | None:intergenic | 25.0% |
| !! | TTAGTTTATTTGCTAAACCA+TGG | - | tig0040749:13513-13532 | Msa1460200:intron | 25.0% |
| !! | TATGTAAATCCTTTTCAAAC+AGG | + | tig0040749:13567-13586 | None:intergenic | 25.0% |
| ! | AATGAAGTTGTCAATTCTTT+CGG | + | tig0040749:13691-13710 | None:intergenic | 25.0% |
| !!! | TTGCAACTTTTTTTGAACTT+CGG | + | tig0040749:13730-13749 | None:intergenic | 25.0% |
| ! | TTAGGAATACCTTTGTATTT+GGG | + | tig0040749:13776-13795 | None:intergenic | 25.0% |
| ! | CTGATACCATCTTAAAATTT+GGG | + | tig0040749:14141-14160 | None:intergenic | 25.0% |
| ! | TCTGATACCATCTTAAAATT+TGG | + | tig0040749:14142-14161 | None:intergenic | 25.0% |
| ! | TTAACTCAATCATACAAAAC+GGG | + | tig0040749:14343-14362 | None:intergenic | 25.0% |
| ! | TCTATTTCACATAAGTCATT+AGG | + | tig0040749:14506-14525 | None:intergenic | 25.0% |
| ! | GGTGTACATTAGATATATAA+TGG | - | tig0040749:14641-14660 | Msa1460200:CDS | 25.0% |
| !!! | ACATTAGATATATAATGGAC+GGG | - | tig0040749:14646-14665 | Msa1460200:CDS | 25.0% |
| !!! | ATGGTTTGAAATTTTGTCAA+TGG | - | tig0040749:14715-14734 | Msa1460200:five_prime_UTR | 25.0% |
| !!! | TTTGAAATTTTGTCAATGGT+TGG | - | tig0040749:14719-14738 | Msa1460200:five_prime_UTR | 25.0% |
| ! | CAAACTCTTTGATAGTAAGT+TGG | - | tig0040749:4866-4885 | Msa1460200:three_prime_UTR | 30.0% |
| TAAAATGCTTTGTCTTTGAG+TGG | + | tig0040749:4903-4922 | None:intergenic | 30.0% | |
| AAAAGAAGGTTATGGCAATT+TGG | + | tig0040749:4995-5014 | None:intergenic | 30.0% | |
| AACAAATCTGTCACAATCAA+AGG | - | tig0040749:5167-5186 | Msa1460200:intron | 30.0% | |
| !! | TGATTTTTGTTTGTTTCAGC+TGG | - | tig0040749:5250-5269 | Msa1460200:intron | 30.0% |
| !! | GATTTTTGTTTGTTTCAGCT+GGG | - | tig0040749:5251-5270 | Msa1460200:intron | 30.0% |
| !! | ATTTTTGTTTGTTTCAGCTG+GGG | - | tig0040749:5252-5271 | Msa1460200:intron | 30.0% |
| ! | CCTAATAGCTTTCATTTTAG+AGG | + | tig0040749:5960-5979 | None:intergenic | 30.0% |
| !! | CCTCTAAAATGAAAGCTATT+AGG | - | tig0040749:5957-5976 | Msa1460200:intron | 30.0% |
| CAATCATAACATAATCCAAG+GGG | + | tig0040749:6179-6198 | None:intergenic | 30.0% | |
| TTCAACAATGGATCTTTATC+TGG | - | tig0040749:6287-6306 | Msa1460200:intron | 30.0% | |
| !! | TCAGTATCTGTTTGATTTTC+TGG | - | tig0040749:6488-6507 | Msa1460200:intron | 30.0% |
| !! | ATACTTGTTTTCTTCACATG+AGG | + | tig0040749:6552-6571 | None:intergenic | 30.0% |
| !!! | TCCTATGATATTTTGGTACT+TGG | - | tig0040749:6627-6646 | Msa1460200:intron | 30.0% |
| ACCAAGTACCAAAATATCAT+AGG | + | tig0040749:6631-6650 | None:intergenic | 30.0% | |
| !!! | TATGATATTTTGGTACTTGG+TGG | - | tig0040749:6630-6649 | Msa1460200:intron | 30.0% |
| AATTCTTAATAGCAGCTCAT+AGG | - | tig0040749:6673-6692 | Msa1460200:intron | 30.0% | |
| TAGATATGTGTATGCTTGTT+TGG | - | tig0040749:6865-6884 | Msa1460200:intron | 30.0% | |
| CATGGCATATGATATGATAT+AGG | - | tig0040749:6952-6971 | Msa1460200:intron | 30.0% | |
| !! | GTCATGTTATTTAGCTTTGT+TGG | - | tig0040749:7008-7027 | Msa1460200:intron | 30.0% |
| TCCACTTGGATAGATATTTA+CGG | + | tig0040749:7343-7362 | None:intergenic | 30.0% | |
| GCATATTTCAAAAATCCACT+TGG | + | tig0040749:7357-7376 | None:intergenic | 30.0% | |
| TCAAACAAATTAAGGGTAAG+TGG | - | tig0040749:7377-7396 | Msa1460200:intron | 30.0% | |
| ! | TAATGAAGATCTGAAATGCT+GGG | - | tig0040749:7401-7420 | Msa1460200:intron | 30.0% |
| !! | GTTCTTTTTAGAAGAAGAAG+AGG | - | tig0040749:7441-7460 | Msa1460200:intron | 30.0% |
| ! | GGAAGAGGATTAATTCTTTT+TGG | - | tig0040749:7465-7484 | Msa1460200:intron | 30.0% |
| ATCTAGTCCTTTCTTATTCT+GGG | - | tig0040749:7490-7509 | Msa1460200:intron | 30.0% | |
| ATCTTCTGTGTAATTATTCC+TGG | - | tig0040749:7519-7538 | Msa1460200:intron | 30.0% | |
| TATTGGAGACATGATCAATT+TGG | - | tig0040749:7717-7736 | Msa1460200:CDS | 30.0% | |
| ! | ATGGAAAAGATTTGAGGTTT+CGG | - | tig0040749:7764-7783 | Msa1460200:CDS | 30.0% |
| TTTGCAAGAGACCTTTATAA+TGG | - | tig0040749:7825-7844 | Msa1460200:CDS | 30.0% | |
| TTGCAAGAGACCTTTATAAT+GGG | - | tig0040749:7826-7845 | Msa1460200:CDS | 30.0% | |
| AACAACTTTCACAAAAGAAG+TGG | + | tig0040749:7955-7974 | None:intergenic | 30.0% | |
| TATGAGAATATAACTAGGCA+TGG | - | tig0040749:8209-8228 | Msa1460200:intron | 30.0% | |
| !!! | TATCTACTTCCACCTTTTTT+TGG | - | tig0040749:8332-8351 | Msa1460200:intron | 30.0% |
| !!! | ATCTACTTCCACCTTTTTTT+GGG | - | tig0040749:8333-8352 | Msa1460200:intron | 30.0% |
| ! | CCATATATGATTGTTTTCCA+TGG | + | tig0040749:8604-8623 | None:intergenic | 30.0% |
| CCATGGAAAACAATCATATA+TGG | - | tig0040749:8601-8620 | Msa1460200:intron | 30.0% | |
| !! | TTTTTCTGGTGACAAAAGAA+AGG | - | tig0040749:8679-8698 | Msa1460200:intron | 30.0% |
| !! | ATTTTGTTTGGTATTGTAGG+TGG | - | tig0040749:8722-8741 | Msa1460200:intron | 30.0% |
| GTTATGTAAGGCTTAAAAAG+AGG | - | tig0040749:8775-8794 | Msa1460200:intron | 30.0% | |
| AAAAAGAGGTAGATCTGTAA+TGG | - | tig0040749:8789-8808 | Msa1460200:intron | 30.0% | |
| ATAGTCTTTCTCTACTTTCA+TGG | - | tig0040749:8885-8904 | Msa1460200:intron | 30.0% | |
| TTTACTAAAGTAGTGTCTAC+TGG | + | tig0040749:9092-9111 | None:intergenic | 30.0% | |
| AGTAGACACTACTTTAGTAA+AGG | - | tig0040749:9091-9110 | Msa1460200:intron | 30.0% | |
| GAAATTAAAAGGGACAAAAC+TGG | - | tig0040749:9191-9210 | Msa1460200:intron | 30.0% | |
| TTTGAGAATCAAACAAGTTG+GGG | - | tig0040749:9292-9311 | Msa1460200:intron | 30.0% | |
| ! | TAAAACATGTCGGGATATTT+TGG | + | tig0040749:9466-9485 | None:intergenic | 30.0% |
| TATTCCAGATAAAACATGTC+GGG | + | tig0040749:9475-9494 | None:intergenic | 30.0% | |
| TAACAGTCTTAATGACATAG+AGG | + | tig0040749:9572-9591 | None:intergenic | 30.0% | |
| AATAAACTTAAGCGTGTTGA+GGG | + | tig0040749:9665-9684 | None:intergenic | 30.0% | |
| TAATAAACTTAAGCGTGTTG+AGG | + | tig0040749:9666-9685 | None:intergenic | 30.0% | |
| TGTCTGATACTTCATGTTTA+CGG | - | tig0040749:9718-9737 | Msa1460200:intron | 30.0% | |
| TCACTAAAACATCACTTGAT+GGG | + | tig0040749:10039-10058 | None:intergenic | 30.0% | |
| TTGATCTCCACTAAAAATGA+AGG | - | tig0040749:10185-10204 | Msa1460200:intron | 30.0% | |
| TGTGTTAGCATATGTAACTA+TGG | - | tig0040749:10292-10311 | Msa1460200:intron | 30.0% | |
| TTCACATATAACGTCAATGT+TGG | + | tig0040749:10504-10523 | None:intergenic | 30.0% | |
| !! | TTTTAATTGGGATTAACGGT+AGG | + | tig0040749:10549-10568 | None:intergenic | 30.0% |
| !! | GCACTTTTAATTGGGATTAA+CGG | + | tig0040749:10553-10572 | None:intergenic | 30.0% |
| GATTCATTAAATGGTGTATG+TGG | - | tig0040749:10620-10639 | Msa1460200:intron | 30.0% | |
| TTGTTTATAATAGTGACTGC+AGG | - | tig0040749:10685-10704 | Msa1460200:intron | 30.0% | |
| TGTTTATAATAGTGACTGCA+GGG | - | tig0040749:10686-10705 | Msa1460200:intron | 30.0% | |
| ! | GTCAAAGATGTTGAACTTTT+TGG | - | tig0040749:11010-11029 | Msa1460200:intron | 30.0% |
| !! | GAACTTTTTGGGCTAAAATA+TGG | - | tig0040749:11022-11041 | Msa1460200:intron | 30.0% |
| TTTGGGCTAAAATATGGTAT+TGG | - | tig0040749:11028-11047 | Msa1460200:intron | 30.0% | |
| !!! | TTATTTTTGGAAATAGTCCC+TGG | - | tig0040749:11277-11296 | Msa1460200:intron | 30.0% |
| !!! | TTGTCACTTTTGTGCATATT+GGG | + | tig0040749:11304-11323 | None:intergenic | 30.0% |
| !!! | TTTGTCACTTTTGTGCATAT+TGG | + | tig0040749:11305-11324 | None:intergenic | 30.0% |
| AGTTGGCTAAAATATGGTAT+TGG | + | tig0040749:11512-11531 | None:intergenic | 30.0% | |
| AAAACAACAAAGGTGATAAG+GGG | + | tig0040749:11612-11631 | None:intergenic | 30.0% | |
| CAAAACAACAAAGGTGATAA+GGG | + | tig0040749:11613-11632 | None:intergenic | 30.0% | |
| ACAAAACAACAAAGGTGATA+AGG | + | tig0040749:11614-11633 | None:intergenic | 30.0% | |
| ! | AAGAGAGTACAAAACAACAA+AGG | + | tig0040749:11622-11641 | None:intergenic | 30.0% |
| ! | CTCTGATTAATTGTACTGAT+AGG | - | tig0040749:11756-11775 | Msa1460200:CDS | 30.0% |
| TTGTTTGAATTTCAGACTTC+TGG | - | tig0040749:12465-12484 | Msa1460200:intron | 30.0% | |
| TTGTTCATGACATGTGATAT+AGG | - | tig0040749:12532-12551 | Msa1460200:intron | 30.0% | |
| ! | AGACAACAATACTTCTAGTT+AGG | - | tig0040749:12563-12582 | Msa1460200:intron | 30.0% |
| !!! | TGAGGGGTGTTTTTTTTTTT+GGG | + | tig0040749:13391-13410 | None:intergenic | 30.0% |
| !!! | TTGAGGGGTGTTTTTTTTTT+TGG | + | tig0040749:13392-13411 | None:intergenic | 30.0% |
| ! | ATTTGCTAAACCATGGTAAA+TGG | - | tig0040749:13520-13539 | Msa1460200:intron | 30.0% |
| TTTGCTAAACCATGGTAAAT+GGG | - | tig0040749:13521-13540 | Msa1460200:intron | 30.0% | |
| CAAATATTTCCCATTTACCA+TGG | + | tig0040749:13533-13552 | None:intergenic | 30.0% | |
| TGGTAAATGGGAAATATTTG+AGG | - | tig0040749:13533-13552 | Msa1460200:intron | 30.0% | |
| !! | GTTTTAGTACCTGTTTGAAA+AGG | - | tig0040749:13555-13574 | Msa1460200:intron | 30.0% |
| CAGCATAATATTTGTGATTC+AGG | - | tig0040749:13628-13647 | Msa1460200:intron | 30.0% | |
| GTTAGGAATACCTTTGTATT+TGG | + | tig0040749:13777-13796 | None:intergenic | 30.0% | |
| CTAAAACTGTCAAACAATAG+TGG | + | tig0040749:13799-13818 | None:intergenic | 30.0% | |
| !! | GGTATTAAGTGTTGAAAACA+AGG | + | tig0040749:13827-13846 | None:intergenic | 30.0% |
| ACCATTTGAATTTACTTACC+TGG | - | tig0040749:13844-13863 | Msa1460200:intron | 30.0% | |
| GATGAAGATATCAAAGATCT+CGG | + | tig0040749:13873-13892 | None:intergenic | 30.0% | |
| TAATTCCTATTCCAATGTGT+TGG | - | tig0040749:13911-13930 | Msa1460200:intron | 30.0% | |
| AATTTCCAACACATTGGAAT+AGG | + | tig0040749:13919-13938 | None:intergenic | 30.0% | |
| AAACAGAATTTCCAACACAT+TGG | + | tig0040749:13925-13944 | None:intergenic | 30.0% | |
| ! | ACCATCTTAAAATTTGGGTT+GGG | + | tig0040749:14136-14155 | None:intergenic | 30.0% |
| TACCATCTTAAAATTTGGGT+TGG | + | tig0040749:14137-14156 | None:intergenic | 30.0% | |
| ! | CATAACACTTCAGGTTTATT+GGG | + | tig0040749:14233-14252 | None:intergenic | 30.0% |
| ATATATCCATATTTCTCAGC+TGG | + | tig0040749:14408-14427 | None:intergenic | 30.0% | |
| GCTGAGAAATATGGATATAT+CGG | - | tig0040749:14408-14427 | Msa1460200:CDS | 30.0% | |
| TATAAGATTGTGTCTTTCCA+TGG | + | tig0040749:14455-14474 | None:intergenic | 30.0% | |
| !! | ATTTTGTTTGGTATTGTAGG+TGG | - | tig0040749:8722-8741 | Msa1460200:intron | 30.0% |
| GAAAGTCTTAATGTGTATAC+TGG | + | tig0040749:14895-14914 | None:intergenic | 30.0% | |
| ! | ATCAAAGAGTTTGACTTTCG+AGG | + | tig0040749:4859-4878 | None:intergenic | 35.0% |
| GTAGTTAAAGAGAAGTAGAG+GGG | + | tig0040749:4973-4992 | None:intergenic | 35.0% | |
| GGTAGTTAAAGAGAAGTAGA+GGG | + | tig0040749:4974-4993 | None:intergenic | 35.0% | |
| TGGTAGTTAAAGAGAAGTAG+AGG | + | tig0040749:4975-4994 | None:intergenic | 35.0% | |
| CTAACGTTAAAGTTAACGTC+CGG | - | tig0040749:5359-5378 | Msa1460200:intron | 35.0% | |
| ! | GAAGGAAAGTGTATTGTTCA+TGG | - | tig0040749:5487-5506 | Msa1460200:intron | 35.0% |
| TTTGAGTACAATTCTGCTAC+TGG | - | tig0040749:5565-5584 | Msa1460200:intron | 35.0% | |
| CTATTATTTGCTCCTTCGAT+TGG | - | tig0040749:5998-6017 | Msa1460200:CDS | 35.0% | |
| ATGGATCTTTATCTGGATTC+TGG | - | tig0040749:6294-6313 | Msa1460200:intron | 35.0% | |
| ! | TTGCTCAAATTTTTCATGGC+AGG | - | tig0040749:6332-6351 | Msa1460200:intron | 35.0% |
| TTTAAGTCGGCATTAACCAT+AGG | - | tig0040749:6572-6591 | Msa1460200:intron | 35.0% | |
| AAGGAAAAATGATGCTCCTA+TGG | + | tig0040749:6591-6610 | None:intergenic | 35.0% | |
| GTCCTGTATAAGAAGAACAA+GGG | + | tig0040749:6819-6838 | None:intergenic | 35.0% | |
| AGTCCTGTATAAGAAGAACA+AGG | + | tig0040749:6820-6839 | None:intergenic | 35.0% | |
| GTGTATGCTTGTTTGGATTA+TGG | - | tig0040749:6872-6891 | Msa1460200:intron | 35.0% | |
| AGAAATAAGCAATGAGACAC+CGG | + | tig0040749:7222-7241 | None:intergenic | 35.0% | |
| CCACTTGGATAGATATTTAC+GGG | + | tig0040749:7342-7361 | None:intergenic | 35.0% | |
| ! | CTAATGAAGATCTGAAATGC+TGG | - | tig0040749:7400-7419 | Msa1460200:intron | 35.0% |
| !! | CTTTTTAGAAGAAGAAGAGG+AGG | - | tig0040749:7444-7463 | Msa1460200:intron | 35.0% |
| GATCTAGTCCTTTCTTATTC+TGG | - | tig0040749:7489-7508 | Msa1460200:intron | 35.0% | |
| TTCTGTGTAATTATTCCTGG+TGG | - | tig0040749:7522-7541 | Msa1460200:intron | 35.0% | |
| ! | CTTTAATTAGTCTGTGCATG+TGG | + | tig0040749:7567-7586 | None:intergenic | 35.0% |
| CTGTTGTGACAAACTTAATG+TGG | - | tig0040749:7615-7634 | Msa1460200:CDS | 35.0% | |
| TGCAAGAGACCTTTATAATG+GGG | - | tig0040749:7827-7846 | Msa1460200:CDS | 35.0% | |
| ! | ACCTTTATAATGGGGATATC+AGG | - | tig0040749:7835-7854 | Msa1460200:CDS | 35.0% |
| AAAGAAGTGGTCAAGTCTTT+CGG | + | tig0040749:7942-7961 | None:intergenic | 35.0% | |
| CTCATACTATCAAACAACAG+TGG | + | tig0040749:8052-8071 | None:intergenic | 35.0% | |
| ATCAAAGATCTTAAGTGGTC+AGG | + | tig0040749:8112-8131 | None:intergenic | 35.0% | |
| GAAGCTTTGCCTACTTTAAT+GGG | + | tig0040749:8429-8448 | None:intergenic | 35.0% | |
| CAAAAGTCTGAGTATGAACA+AGG | + | tig0040749:9045-9064 | None:intergenic | 35.0% | |
| ! | TTGAGAATCAAACAAGTTGG+GGG | - | tig0040749:9293-9312 | Msa1460200:intron | 35.0% |
| CTAGATATGCTCTATAAGTC+TGG | + | tig0040749:9369-9388 | None:intergenic | 35.0% | |
| CTTATAGAGCATATCTAGCA+TGG | - | tig0040749:9371-9390 | Msa1460200:intron | 35.0% | |
| ATCTAGCATGGAGAAATTAG+TGG | - | tig0040749:9383-9402 | Msa1460200:intron | 35.0% | |
| ! | GGGTAATTTCAGATTTTCGA+GGG | + | tig0040749:9438-9457 | None:intergenic | 35.0% |
| ! | GAAAATCTGAAATTACCCGT+TGG | - | tig0040749:9440-9459 | Msa1460200:intron | 35.0% |
| ! | ATATCCCGACATGTTTTATC+TGG | - | tig0040749:9468-9487 | Msa1460200:intron | 35.0% |
| ! | ATATTTTGCTCATCCAGATG+TGG | - | tig0040749:9540-9559 | Msa1460200:intron | 35.0% |
| ! | AGTAACTCACTCGTGTATTT+TGG | + | tig0040749:9908-9927 | None:intergenic | 35.0% |
| CTCACTAAAACATCACTTGA+TGG | + | tig0040749:10040-10059 | None:intergenic | 35.0% | |
| ACACACACACATTTCAGTTT+AGG | - | tig0040749:10092-10111 | Msa1460200:intron | 35.0% | |
| ATCTCCACTAAAAATGAAGG+AGG | - | tig0040749:10188-10207 | Msa1460200:intron | 35.0% | |
| !! | TGATCCTCCTTCATTTTTAG+TGG | + | tig0040749:10195-10214 | None:intergenic | 35.0% |
| AAGGAGGATCAACTGAAATT+AGG | - | tig0040749:10204-10223 | Msa1460200:intron | 35.0% | |
| ATGCTAACACAAAAATGGCA+TGG | + | tig0040749:10283-10302 | None:intergenic | 35.0% | |
| !! | GTATGGTTGATGAATCAGAT+TGG | - | tig0040749:10365-10384 | Msa1460200:intron | 35.0% |
| GATTGCAAATACAGATCAAG+TGG | - | tig0040749:10459-10478 | Msa1460200:intron | 35.0% | |
| !! | GGTGTAGAGCACTTTTAATT+GGG | + | tig0040749:10561-10580 | None:intergenic | 35.0% |
| ! | ATTTTGGATTGTAAAAGCCG+TGG | - | tig0040749:10848-10867 | Msa1460200:intron | 35.0% |
| ! | AAACGTTTTGCAAAAGACCA+CGG | + | tig0040749:10868-10887 | None:intergenic | 35.0% |
| !!! | AAATAGGCCAGTTTTGGTTT+TGG | - | tig0040749:11059-11078 | Msa1460200:intron | 35.0% |
| !!! | AAATAGGCCAGTTTTGGTTT+TGG | - | tig0040749:11059-11078 | Msa1460200:intron | 35.0% |
| ! | CAAAACTGACCTATTTTGCA+GGG | + | tig0040749:11206-11225 | None:intergenic | 35.0% |
| !!! | TGTCACTTTTGTGCATATTG+GGG | + | tig0040749:11303-11322 | None:intergenic | 35.0% |
| !! | CAAAACTGGCCTATTTTGTA+GGG | - | tig0040749:11366-11385 | Msa1460200:intron | 35.0% |
| !!! | GTTTTTGGTCCCTACAAAAT+AGG | + | tig0040749:11378-11397 | None:intergenic | 35.0% |
| !! | CAAAACTGGTCTATTTTGCA+GGG | - | tig0040749:11425-11444 | Msa1460200:intron | 35.0% |
| !!! | AAATAGGCCAGTTTTGGTTT+TGG | + | tig0040749:11059-11078 | None:intergenic | 35.0% |
| AACGGCATATCTGAATTCAT+TGG | + | tig0040749:11689-11708 | None:intergenic | 35.0% | |
| GATTAGAACTTACTACGGAA+CGG | + | tig0040749:11707-11726 | None:intergenic | 35.0% | |
| AAAATGCACTGTTCACAGTT+TGG | - | tig0040749:12053-12072 | Msa1460200:intron | 35.0% | |
| TACATGAAGCTTGATGTTGT+TGG | - | tig0040749:12081-12100 | Msa1460200:intron | 35.0% | |
| ACTCACACTTGAACTATATC+AGG | + | tig0040749:12162-12181 | None:intergenic | 35.0% | |
| TTGTTACAATGAAGAAGGTG+TGG | - | tig0040749:12255-12274 | Msa1460200:intron | 35.0% | |
| ! | TGTTACAATGAAGAAGGTGT+GGG | - | tig0040749:12256-12275 | Msa1460200:intron | 35.0% |
| ATAACTTCATCAGGGTTGTA+GGG | + | tig0040749:12357-12376 | None:intergenic | 35.0% | |
| ACTGGATCATAACTTCATCA+GGG | + | tig0040749:12365-12384 | None:intergenic | 35.0% | |
| GAACTGTATAAGCAGAACAA+GGG | + | tig0040749:12420-12439 | None:intergenic | 35.0% | |
| AGAACTGTATAAGCAGAACA+AGG | + | tig0040749:12421-12440 | None:intergenic | 35.0% | |
| ! | CAACAATACTTCTAGTTAGG+TGG | - | tig0040749:12566-12585 | Msa1460200:intron | 35.0% |
| ATATGTCGTGCTAAAGTTCA+TGG | - | tig0040749:12607-12626 | Msa1460200:intron | 35.0% | |
| GAATCAGCAGATTGTACAAT+TGG | - | tig0040749:12642-12661 | Msa1460200:intron | 35.0% | |
| CTTAGAGCTAAGGAAGAAAT+TGG | + | tig0040749:12954-12973 | None:intergenic | 35.0% | |
| !! | CAATTTCTTCCTTAGCTCTA+AGG | - | tig0040749:12952-12971 | Msa1460200:intron | 35.0% |
| !! | ATCATTAACTTGTGCCTTGA+GGG | + | tig0040749:13102-13121 | None:intergenic | 35.0% |
| !! | AATCATTAACTTGTGCCTTG+AGG | + | tig0040749:13103-13122 | None:intergenic | 35.0% |
| !! | AGTGTTAACTTGTGTCCTTA+GGG | + | tig0040749:13242-13261 | None:intergenic | 35.0% |
| !! | TAGTGTTAACTTGTGTCCTT+AGG | + | tig0040749:13243-13262 | None:intergenic | 35.0% |
| !! | TTTGGTGGGTTATCTATCTA+TGG | + | tig0040749:13284-13303 | None:intergenic | 35.0% |
| !! | TTTTTAGGGGTGATGAGTTT+TGG | + | tig0040749:13302-13321 | None:intergenic | 35.0% |
| !! | ACAATGCTTGCTTTTGTGAA+GGG | + | tig0040749:13330-13349 | None:intergenic | 35.0% |
| !! | AACAATGCTTGCTTTTGTGA+AGG | + | tig0040749:13331-13350 | None:intergenic | 35.0% |
| !!! | GAGGGGTGTTTTTTTTTTTG+GGG | + | tig0040749:13390-13409 | None:intergenic | 35.0% |
| ACTGTCAAACAATAGTGGTT+AGG | + | tig0040749:13794-13813 | None:intergenic | 35.0% | |
| GCCAGGTAAGTAAATTCAAA+TGG | + | tig0040749:13848-13867 | None:intergenic | 35.0% | |
| TGGCATATGCAGTGTTTATA+AGG | - | tig0040749:14066-14085 | Msa1460200:intron | 35.0% | |
| TATGCAGTGTTTATAAGGCT+TGG | - | tig0040749:14071-14090 | Msa1460200:intron | 35.0% | |
| ATGCAGTGTTTATAAGGCTT+GGG | - | tig0040749:14072-14091 | Msa1460200:intron | 35.0% | |
| !!! | GTTACCTTACTGGTTTTGTT+AGG | - | tig0040749:14100-14119 | Msa1460200:intron | 35.0% |
| TCAACCTAACAAAACCAGTA+AGG | + | tig0040749:14107-14126 | None:intergenic | 35.0% | |
| AGCCTATCTTATATCTGTTG+TGG | - | tig0040749:14161-14180 | Msa1460200:intron | 35.0% | |
| AGCCACAACAGATATAAGAT+AGG | + | tig0040749:14166-14185 | None:intergenic | 35.0% | |
| AGGTTTATTGGGATAACACT+CGG | + | tig0040749:14222-14241 | None:intergenic | 35.0% | |
| ! | CCATAACACTTCAGGTTTAT+TGG | + | tig0040749:14234-14253 | None:intergenic | 35.0% |
| ! | CCAATAAACCTGAAGTGTTA+TGG | - | tig0040749:14231-14250 | Msa1460200:CDS | 35.0% |
| ! | ATAAACCTGAAGTGTTATGG+TGG | - | tig0040749:14234-14253 | Msa1460200:CDS | 35.0% |
| GCAACACAAATGCCTTAATT+AGG | + | tig0040749:14293-14312 | None:intergenic | 35.0% | |
| ACCATCACTTTCATCTTTGA+CGG | + | tig0040749:14624-14643 | None:intergenic | 35.0% | |
| ACCAAGGATTTGAAAAGCTA+GGG | + | tig0040749:14673-14692 | None:intergenic | 35.0% | |
| TACCAAGGATTTGAAAAGCT+AGG | + | tig0040749:14674-14693 | None:intergenic | 35.0% | |
| ! | TAGCTTTTCAAATCCTTGGT+AGG | - | tig0040749:14673-14692 | Msa1460200:five_prime_UTR | 35.0% |
| AGCTGAATAAACTCTGACAA+TGG | - | tig0040749:14696-14715 | Msa1460200:five_prime_UTR | 35.0% | |
| GTTTCTCCATATATCCTCAT+CGG | - | tig0040749:14814-14833 | Msa1460200:five_prime_UTR | 35.0% | |
| TTTCTCCATATATCCTCATC+GGG | - | tig0040749:14815-14834 | Msa1460200:five_prime_UTR | 35.0% | |
| CAAAAGTCTGAGTATGAACA+AGG | + | tig0040749:9045-9064 | None:intergenic | 35.0% | |
| AACACAACACAACACAACCA+TGG | - | tig0040749:5091-5110 | Msa1460200:three_prime_UTR | 40.0% | |
| ATGACTCTAGGTTTCGCTTT+GGG | + | tig0040749:5130-5149 | None:intergenic | 40.0% | |
| TATGACTCTAGGTTTCGCTT+TGG | + | tig0040749:5131-5150 | None:intergenic | 40.0% | |
| GTTTGACTGAGTATGACTCT+AGG | + | tig0040749:5142-5161 | None:intergenic | 40.0% | |
| !! | CAGAGTGCTGATACAATTGA+AGG | - | tig0040749:5469-5488 | Msa1460200:intron | 40.0% |
| TACACTAAGCTTGATGCTGT+TGG | - | tig0040749:5520-5539 | Msa1460200:intron | 40.0% | |
| AGGTTTCATTCTCCAATCGA+AGG | + | tig0040749:6013-6032 | None:intergenic | 40.0% | |
| ! | TACAGAGTTGATCACCTGAA+TGG | - | tig0040749:6056-6075 | Msa1460200:CDS | 40.0% |
| AAGAAGGATCATCACCATTC+AGG | + | tig0040749:6073-6092 | None:intergenic | 40.0% | |
| ATCCTTCTTCTCCAATGCAA+AGG | - | tig0040749:6084-6103 | Msa1460200:CDS | 40.0% | |
| TCCTTCTTCTCCAATGCAAA+GGG | - | tig0040749:6085-6104 | Msa1460200:CDS | 40.0% | |
| TGAACTGAGGATAAGGATGA+TGG | + | tig0040749:6223-6242 | None:intergenic | 40.0% | |
| CATCCAAATCAGGTTTACAG+CGG | + | tig0040749:6249-6268 | None:intergenic | 40.0% | |
| !! | CTGTAAACCTGATTTGGATG+AGG | - | tig0040749:6249-6268 | Msa1460200:intron | 40.0% |
| ATCAGATCATCAGGGTTGTA+GGG | + | tig0040749:6376-6395 | None:intergenic | 40.0% | |
| ACTGAACCATCAGATCATCA+GGG | + | tig0040749:6384-6403 | None:intergenic | 40.0% | |
| TTTCTGGACTCTTGTATGTC+TGG | - | tig0040749:6504-6523 | Msa1460200:intron | 40.0% | |
| GGAAAGAGTTGTCTTACTCA+AGG | + | tig0040749:6610-6629 | None:intergenic | 40.0% | |
| !! | GATTCTGCTTTGTTTCCTTC+TGG | - | tig0040749:6726-6745 | Msa1460200:intron | 40.0% |
| TAAGAAGAACAAGGGAGAGT+AGG | + | tig0040749:6811-6830 | None:intergenic | 40.0% | |
| CTCCCTTGTTCTTCTTATAC+AGG | - | tig0040749:6814-6833 | Msa1460200:intron | 40.0% | |
| GCATGACATTTCTTTCACAC+TGG | - | tig0040749:7195-7214 | Msa1460200:intron | 40.0% | |
| ACATTTCTTTCACACTGGTC+CGG | - | tig0040749:7200-7219 | Msa1460200:intron | 40.0% | |
| GATAGATATTTACGGGACCT+CGG | + | tig0040749:7335-7354 | None:intergenic | 40.0% | |
| CCCGTAAATATCTATCCAAG+TGG | - | tig0040749:7339-7358 | Msa1460200:intron | 40.0% | |
| AAATGCTGGGAAAGATTCAG+AGG | - | tig0040749:7414-7433 | Msa1460200:intron | 40.0% | |
| TAGTCCTTTCTTATTCTGGG+AGG | - | tig0040749:7493-7512 | Msa1460200:intron | 40.0% | |
| ! | AGTCCTTTCTTATTCTGGGA+GGG | - | tig0040749:7494-7513 | Msa1460200:intron | 40.0% |
| GGAGACATGATCAATTTGGA+TGG | - | tig0040749:7721-7740 | Msa1460200:CDS | 40.0% | |
| CATATAAACCCTCATCGAAC+AGG | + | tig0040749:7792-7811 | None:intergenic | 40.0% | |
| GCCTGATATCCCCATTATAA+AGG | + | tig0040749:7839-7858 | None:intergenic | 40.0% | |
| ACAGTCATGTCTATACAAGC+AGG | + | tig0040749:7911-7930 | None:intergenic | 40.0% | |
| TGCTTGTATAGACATGACTG+TGG | - | tig0040749:7910-7929 | Msa1460200:CDS | 40.0% | |
| TTGTATAGACATGACTGTGG+AGG | - | tig0040749:7913-7932 | Msa1460200:CDS | 40.0% | |
| TGTGAAAGTTGTTCCGTTGA+AGG | - | tig0040749:7962-7981 | Msa1460200:intron | 40.0% | |
| !!! | CAGCTGTTTTTGACCTTCAA+CGG | + | tig0040749:7978-7997 | None:intergenic | 40.0% |
| TACAAGACTCGCAGATACAA+AGG | - | tig0040749:8015-8034 | Msa1460200:intron | 40.0% | |
| CTTAAGCTGCCCATTAAAGT+AGG | - | tig0040749:8417-8436 | Msa1460200:intron | 40.0% | |
| CGAAGCTTTGCCTACTTTAA+TGG | + | tig0040749:8430-8449 | None:intergenic | 40.0% | |
| ATATCTGCATGCTTCTCCTT+AGG | - | tig0040749:8573-8592 | Msa1460200:intron | 40.0% | |
| CATAACATCGCTTCTACCTT+CGG | + | tig0040749:8761-8780 | None:intergenic | 40.0% | |
| GGTAGAAGCGATGTTATGTA+AGG | - | tig0040749:8763-8782 | Msa1460200:intron | 40.0% | |
| AAGAGGTAGATCTGTAATGG+AGG | - | tig0040749:8792-8811 | Msa1460200:intron | 40.0% | |
| ! | AGAGGTAGATCTGTAATGGA+GGG | - | tig0040749:8793-8812 | Msa1460200:intron | 40.0% |
| !! | ACCCTTGCTTTTGTAATCCT+GGG | - | tig0040749:8817-8836 | Msa1460200:intron | 40.0% |
| ACCCAGGATTACAAAAGCAA+GGG | + | tig0040749:8821-8840 | None:intergenic | 40.0% | |
| TACCCAGGATTACAAAAGCA+AGG | + | tig0040749:8822-8841 | None:intergenic | 40.0% | |
| !! | TTGCTTTTGTAATCCTGGGT+AGG | - | tig0040749:8821-8840 | Msa1460200:intron | 40.0% |
| CTGAACAAACTCTGTGACAA+TGG | - | tig0040749:8846-8865 | Msa1460200:intron | 40.0% | |
| GATTCTCTATCTATCCCCAT+CGG | - | tig0040749:9017-9036 | Msa1460200:intron | 40.0% | |
| ATTCTCTATCTATCCCCATC+GGG | - | tig0040749:9018-9037 | Msa1460200:intron | 40.0% | |
| TACTTGACACGCTGCTAATT+TGG | - | tig0040749:9342-9361 | Msa1460200:intron | 40.0% | |
| ! | CGGGTAATTTCAGATTTTCG+AGG | + | tig0040749:9439-9458 | None:intergenic | 40.0% |
| AAATGGCATGGATCATGTTG+TGG | + | tig0040749:10271-10290 | None:intergenic | 40.0% | |
| !!! | AAACTGTTTTGGTCCTACGT+TGG | - | tig0040749:10343-10362 | Msa1460200:intron | 40.0% |
| TTCATCAACCATACCAACGT+AGG | + | tig0040749:10359-10378 | None:intergenic | 40.0% | |
| !! | GGGTGTAGAGCACTTTTAAT+TGG | + | tig0040749:10562-10581 | None:intergenic | 40.0% |
| !! | CAAAACTGGCCTATTTTGCA+GGG | + | tig0040749:11485-11504 | None:intergenic | 40.0% |
| !!! | GTTTTTGGTCCCTGCAAAAT+AGG | - | tig0040749:11103-11122 | Msa1460200:intron | 40.0% |
| !! | CAAAACTGGCCTATTTTGCA+GGG | + | tig0040749:11485-11504 | None:intergenic | 40.0% |
| !! | CAAAACTGGCCTATTTTGCA+GGG | + | tig0040749:11485-11504 | None:intergenic | 40.0% |
| !!! | GTTTTTGGTCCCTGCAAAAT+AGG | - | tig0040749:11103-11122 | Msa1460200:intron | 40.0% |
| ! | CCAAAACTGACCTATTTTGC+AGG | + | tig0040749:11207-11226 | None:intergenic | 40.0% |
| ! | CCTGCAAAATAGGTCAGTTT+TGG | - | tig0040749:11204-11223 | Msa1460200:intron | 40.0% |
| ! | CCTACAAAATAGGCCAGTTT+TGG | + | tig0040749:11368-11387 | None:intergenic | 40.0% |
| !! | CCAAAACTGGCCTATTTTGT+AGG | - | tig0040749:11365-11384 | Msa1460200:intron | 40.0% |
| ACAGGGACTAAAACCAAAAC+TGG | - | tig0040749:11411-11430 | Msa1460200:intron | 40.0% | |
| ! | CCTGCAAAATAGACCAGTTT+TGG | + | tig0040749:11427-11446 | None:intergenic | 40.0% |
| !! | CCAAAACTGGTCTATTTTGC+AGG | - | tig0040749:11424-11443 | Msa1460200:intron | 40.0% |
| !! | CAAAACTGGCCTATTTTGCA+GGG | - | tig0040749:11485-11504 | Msa1460200:intron | 40.0% |
| TCGATCATAGCCACATATGT+TGG | + | tig0040749:11886-11905 | None:intergenic | 40.0% | |
| !! | CAGAGTGTTGATACAATCGA+AGG | - | tig0040749:12030-12049 | Msa1460200:intron | 40.0% |
| TTGAACTACAATTCCGCTAC+TGG | - | tig0040749:12126-12145 | Msa1460200:intron | 40.0% | |
| CATAACTTCATCAGGGTTGT+AGG | + | tig0040749:12358-12377 | None:intergenic | 40.0% | |
| CACTGGATCATAACTTCATC+AGG | + | tig0040749:12366-12385 | None:intergenic | 40.0% | |
| AGAAGTAATGAGACACCAGA+CGG | + | tig0040749:12854-12873 | None:intergenic | 40.0% | |
| CTCAAGTAGTAGCACATACA+CGG | - | tig0040749:13015-13034 | Msa1460200:intron | 40.0% | |
| !! | AATGTTAACTTGTGCCCTCA+AGG | - | tig0040749:13085-13104 | Msa1460200:intron | 40.0% |
| GTTTCTTAACATGTGCCCTA+AGG | - | tig0040749:13224-13243 | Msa1460200:intron | 40.0% | |
| !!! | TGTGAAGGGGTCTGTTTTTA+GGG | + | tig0040749:13316-13335 | None:intergenic | 40.0% |
| !! | TTGTGAAGGGGTCTGTTTTT+AGG | + | tig0040749:13317-13336 | None:intergenic | 40.0% |
| !! | CAATGCTTGCTTTTGTGAAG+GGG | + | tig0040749:13329-13348 | None:intergenic | 40.0% |
| ACCCCTCAAAATAAAACACC+CGG | - | tig0040749:13403-13422 | Msa1460200:CDS | 40.0% | |
| !!! | ACCGGGTGTTTTATTTTGAG+GGG | + | tig0040749:13407-13426 | None:intergenic | 40.0% |
| !!! | GACCGGGTGTTTTATTTTGA+GGG | + | tig0040749:13408-13427 | None:intergenic | 40.0% |
| TCCTTAGGATAAGTGCTCTT+CGG | + | tig0040749:13454-13473 | None:intergenic | 40.0% | |
| ! | TATGGTTTGTGAAGAGGTGT+GGG | + | tig0040749:13488-13507 | None:intergenic | 40.0% |
| ! | TTATGGTTTGTGAAGAGGTG+TGG | + | tig0040749:13489-13508 | None:intergenic | 40.0% |
| TCCTGCTTGTATAGACATGA+CGG | - | tig0040749:7907-7926 | Msa1460200:CDS | 40.0% | |
| TGCAAGACTCCCAAATACAA+AGG | - | tig0040749:13764-13783 | Msa1460200:intron | 40.0% | |
| GAAGATATCAAAGATCTCGG+AGG | + | tig0040749:13870-13889 | None:intergenic | 40.0% | |
| !! | GCCCAACCCAAATTTTAAGA+TGG | - | tig0040749:14132-14151 | Msa1460200:intron | 40.0% |
| GTCTACACTTCAGGCTTATT+GGG | - | tig0040749:14195-14214 | Msa1460200:CDS | 40.0% | |
| ACTTTCCACCATAACACTTC+AGG | + | tig0040749:14242-14261 | None:intergenic | 40.0% | |
| ATGCCTTAATTAGGCAGCTA+GGG | + | tig0040749:14284-14303 | None:intergenic | 40.0% | |
| AATGCCTTAATTAGGCAGCT+AGG | + | tig0040749:14285-14304 | None:intergenic | 40.0% | |
| ! | ATCATACAAAACGGGCTTGA+GGG | + | tig0040749:14335-14354 | None:intergenic | 40.0% |
| ! | AATCATACAAAACGGGCTTG+AGG | + | tig0040749:14336-14355 | None:intergenic | 40.0% |
| GTTTGACCAGCTGAGAAATA+TGG | - | tig0040749:14399-14418 | Msa1460200:CDS | 40.0% | |
| ATATCGGCATGCTTCTCTAT+AGG | - | tig0040749:14424-14443 | Msa1460200:CDS | 40.0% | |
| !! | ACCCTAGCTTTTCAAATCCT+TGG | - | tig0040749:14669-14688 | Msa1460200:five_prime_UTR | 40.0% |
| AGTTTATTCAGCTCCTACCA+AGG | + | tig0040749:14689-14708 | None:intergenic | 40.0% | |
| TATTCACCAGTGAATCGTGT+TGG | - | tig0040749:14915-14934 | Msa1460200:five_prime_UTR | 40.0% | |
| TGCTTTGTCTTTGAGTGGCA+TGG | + | tig0040749:4898-4917 | None:intergenic | 45.0% | |
| CGTGTGCTTTACACATCACA+CGG | + | tig0040749:4932-4951 | None:intergenic | 45.0% | |
| AGAGAAGTAGAGGGGTTTGT+TGG | + | tig0040749:4965-4984 | None:intergenic | 45.0% | |
| TGACTCTAGGTTTCGCTTTG+GGG | + | tig0040749:5129-5148 | None:intergenic | 45.0% | |
| TCGATCTTTGCCACGTAAGA+GGG | + | tig0040749:5313-5332 | None:intergenic | 45.0% | |
| TTCGATCTTTGCCACGTAAG+AGG | + | tig0040749:5314-5333 | None:intergenic | 45.0% | |
| TCTTACGTGGCAAAGATCGA+AGG | - | tig0040749:5313-5332 | Msa1460200:intron | 45.0% | |
| CTTACGTGGCAAAGATCGAA+GGG | - | tig0040749:5314-5333 | Msa1460200:intron | 45.0% | |
| ACGTTAAAGTTAACGTCCGG+TGG | - | tig0040749:5362-5381 | Msa1460200:intron | 45.0% | |
| TTAACGTCCGGTGGTATTAC+CGG | - | tig0040749:5371-5390 | Msa1460200:intron | 45.0% | |
| TTGAACCGTGAAACTGTCTC+CGG | + | tig0040749:5417-5436 | None:intergenic | 45.0% | |
| GAGACAGTTTCACGGTTCAA+AGG | - | tig0040749:5417-5436 | Msa1460200:intron | 45.0% | |
| ACTCACACTGCAACTCTATC+AGG | + | tig0040749:5601-5620 | None:intergenic | 45.0% | |
| GTGATCAACTCTGTATTCCG+AGG | + | tig0040749:6051-6070 | None:intergenic | 45.0% | |
| CCTTCTTCTCCAATGCAAAG+GGG | - | tig0040749:6086-6105 | Msa1460200:CDS | 45.0% | |
| AAGTGTCTACCCCTTTGCAT+TGG | + | tig0040749:6098-6117 | None:intergenic | 45.0% | |
| GACACTTCGATGTCAAAGTG+AGG | - | tig0040749:6111-6130 | Msa1460200:intron | 45.0% | |
| TTCGATGTCAAAGTGAGGCA+GGG | - | tig0040749:6116-6135 | Msa1460200:intron | 45.0% | |
| CTCTAGTCCTCATCCAAATC+AGG | + | tig0040749:6259-6278 | None:intergenic | 45.0% | |
| CATCAGATCATCAGGGTTGT+AGG | + | tig0040749:6377-6396 | None:intergenic | 45.0% | |
| CTACAACCCTGATGATCTGA+TGG | - | tig0040749:6375-6394 | Msa1460200:intron | 45.0% | |
| CACTGAACCATCAGATCATC+AGG | + | tig0040749:6385-6404 | None:intergenic | 45.0% | |
| TGATCTGATGGTTCAGTGTG+AGG | - | tig0040749:6387-6406 | Msa1460200:intron | 45.0% | |
| GATCTGATGGTTCAGTGTGA+GGG | - | tig0040749:6388-6407 | Msa1460200:intron | 45.0% | |
| !! | CTCTTGTATGTCTGGTTCTG+TGG | - | tig0040749:6512-6531 | Msa1460200:intron | 45.0% |
| AACAAGGGAGAGTAGGTTTG+GGG | + | tig0040749:6804-6823 | None:intergenic | 45.0% | |
| GAACAAGGGAGAGTAGGTTT+GGG | + | tig0040749:6805-6824 | None:intergenic | 45.0% | |
| AGAACAAGGGAGAGTAGGTT+TGG | + | tig0040749:6806-6825 | None:intergenic | 45.0% | |
| CTCGGAGTTAAGGCAGAATT+TGG | + | tig0040749:7317-7336 | None:intergenic | 45.0% | |
| CAAATTCTGCCTTAACTCCG+AGG | - | tig0040749:7315-7334 | Msa1460200:intron | 45.0% | |
| AGAAGAAGAAGAGGAGGAAG+AGG | - | tig0040749:7450-7469 | Msa1460200:intron | 45.0% | |
| ! | GTCCTTTCTTATTCTGGGAG+GGG | - | tig0040749:7495-7514 | Msa1460200:intron | 45.0% |
| TTCCCCTCCCAGAATAAGAA+AGG | + | tig0040749:7500-7519 | None:intergenic | 45.0% | |
| TTTCGGTACCTGTTCGATGA+GGG | - | tig0040749:7781-7800 | Msa1460200:CDS | 45.0% | |
| TGCTTGAATGCCTAATGAGC+AGG | - | tig0040749:8458-8477 | Msa1460200:intron | 45.0% | |
| !! | ATATAGTGGGCCTGCTCATT+AGG | + | tig0040749:8471-8490 | None:intergenic | 45.0% |
| ATGAGCAGGCCCACTATATT+TGG | - | tig0040749:8472-8491 | Msa1460200:intron | 45.0% | |
| ! | GTTTTCCATGGCTATGCCTA+AGG | + | tig0040749:8592-8611 | None:intergenic | 45.0% |
| ! | GAGGTAGATCTGTAATGGAG+GGG | - | tig0040749:8794-8813 | Msa1460200:intron | 45.0% |
| !! | GACCCTTGCTTTTGTAATCC+TGG | - | tig0040749:8816-8835 | Msa1460200:intron | 45.0% |
| AGTATCATCCCTGTTTCCCT+TGG | - | tig0040749:8946-8965 | Msa1460200:intron | 45.0% | |
| AACACATCCTCCACTTCCAA+GGG | + | tig0040749:8965-8984 | None:intergenic | 45.0% | |
| AAACACATCCTCCACTTCCA+AGG | + | tig0040749:8966-8985 | None:intergenic | 45.0% | |
| AGTATGAACAAGGACCCGAT+GGG | + | tig0040749:9035-9054 | None:intergenic | 45.0% | |
| GATGTCATCGTGTTCGTAGT+TGG | - | tig0040749:9137-9156 | Msa1460200:intron | 45.0% | |
| TTTCGAGGGTCACTAGAACT+GGG | + | tig0040749:9424-9443 | None:intergenic | 45.0% | |
| !! | TTTTCGAGGGTCACTAGAAC+TGG | + | tig0040749:9425-9444 | None:intergenic | 45.0% |
| !!! | TGTCGGGATATTTTGGCCAA+CGG | + | tig0040749:9459-9478 | None:intergenic | 45.0% |
| ATAGAGGATGATGCCACATC+TGG | + | tig0040749:9556-9575 | None:intergenic | 45.0% | |
| ! | CTACTCCATAGTTGAGTTGC+AGG | - | tig0040749:9744-9763 | Msa1460200:intron | 45.0% |
| TACCTCCTGCAACTCAACTA+TGG | + | tig0040749:9752-9771 | None:intergenic | 45.0% | |
| !! | GTTTTGGTCCTACGTTGGTA+TGG | - | tig0040749:10348-10367 | Msa1460200:intron | 45.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | tig0040749:11043-11062 | Msa1460200:intron | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | + | tig0040749:11484-11503 | None:intergenic | 45.0% |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | - | tig0040749:11053-11072 | Msa1460200:intron | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | + | tig0040749:11484-11503 | None:intergenic | 45.0% |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | - | tig0040749:11053-11072 | Msa1460200:intron | 45.0% |
| !! | GGTTTTGGTCCCTGCAAAAT+AGG | - | tig0040749:11134-11153 | Msa1460200:intron | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | + | tig0040749:11484-11503 | None:intergenic | 45.0% |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | - | tig0040749:11053-11072 | Msa1460200:intron | 45.0% |
| ! | TTTTGTGCATATTGGGGCCA+GGG | + | tig0040749:11297-11316 | None:intergenic | 45.0% |
| ACAGGGACCAAAACCAAAAC+TGG | - | tig0040749:11471-11490 | Msa1460200:intron | 45.0% | |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | + | tig0040749:11053-11072 | None:intergenic | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | - | tig0040749:11484-11503 | Msa1460200:intron | 45.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | tig0040749:11043-11062 | None:intergenic | 45.0% |
| TGTTGGTATCCACGGTTTAG+AGG | + | tig0040749:11869-11888 | None:intergenic | 45.0% | |
| ACCGTGGATACCAACATATG+TGG | - | tig0040749:11873-11892 | Msa1460200:intron | 45.0% | |
| GCCACATATGTTGGTATCCA+CGG | + | tig0040749:11877-11896 | None:intergenic | 45.0% | |
| GAAAAAGCTCCTTTGAGCCA+TGG | + | tig0040749:11990-12009 | None:intergenic | 45.0% | |
| GAAGTAATGAGACACCAGAC+GGG | + | tig0040749:12853-12872 | None:intergenic | 45.0% | |
| !! | TTCCTTAGCTCTAAGGTCCT+GGG | - | tig0040749:12959-12978 | Msa1460200:intron | 45.0% |
| TACACAGAAATTCTCCTCCC+AGG | + | tig0040749:12979-12998 | None:intergenic | 45.0% | |
| !! | TAGGGGTGATGAGTTTTGGT+GGG | + | tig0040749:13298-13317 | None:intergenic | 45.0% |
| !! | TTAGGGGTGATGAGTTTTGG+TGG | + | tig0040749:13299-13318 | None:intergenic | 45.0% |
| !!! | GTGAAGGGGTCTGTTTTTAG+GGG | + | tig0040749:13315-13334 | None:intergenic | 45.0% |
| ! | GTAGTGACGATGAGTGGTTT+TGG | + | tig0040749:13364-13383 | None:intergenic | 45.0% |
| !!! | GGACCGGGTGTTTTATTTTG+AGG | + | tig0040749:13409-13428 | None:intergenic | 45.0% |
| !!! | TCAGGTTTGGTTTTAGGACC+GGG | + | tig0040749:13424-13443 | None:intergenic | 45.0% |
| !!! | CTCAGGTTTGGTTTTAGGAC+CGG | + | tig0040749:13425-13444 | None:intergenic | 45.0% |
| !!! | TGTGGCTCAGGTTTGGTTTT+AGG | + | tig0040749:13430-13449 | None:intergenic | 45.0% |
| !! | TCCGAAGAGCACTTATCCTA+AGG | - | tig0040749:13450-13469 | Msa1460200:intron | 45.0% |
| ACCGTCATGTCTATACAAGC+AGG | + | tig0040749:13660-13679 | None:intergenic | 45.0% | |
| TGCTTGTATAGACATGACGG+TGG | - | tig0040749:13659-13678 | Msa1460200:intron | 45.0% | |
| AGGATGCAATGAAGACAACC+CGG | + | tig0040749:13985-14004 | None:intergenic | 45.0% | |
| TCCAACACCTTCGTTGTGTT+GGG | - | tig0040749:14004-14023 | Msa1460200:intron | 45.0% | |
| TGATTTAGTCCCACTTTGCC+TGG | - | tig0040749:14038-14057 | Msa1460200:intron | 45.0% | |
| ACTGCATATGCCATATGTCC+AGG | + | tig0040749:14059-14078 | None:intergenic | 45.0% | |
| TTGGGTAGCAGTTACCTTAC+TGG | - | tig0040749:14090-14109 | Msa1460200:intron | 45.0% | |
| TTTCGCATCGTCTACACTTC+AGG | - | tig0040749:14186-14205 | Msa1460200:CDS | 45.0% | |
| CGTCTACACTTCAGGCTTAT+TGG | - | tig0040749:14194-14213 | Msa1460200:CDS | 45.0% | |
| TGCCTTAATTAGGCAGCTAG+GGG | + | tig0040749:14283-14302 | None:intergenic | 45.0% | |
| CTTCTCTATAGGCATAGCCA+TGG | - | tig0040749:14435-14454 | Msa1460200:CDS | 45.0% | |
| GCCGTCAAAGATGAAAGTGA+TGG | - | tig0040749:14620-14639 | Msa1460200:CDS | 45.0% | |
| GTAACCATCACTGTTTCCCT+AGG | - | tig0040749:14743-14762 | Msa1460200:five_prime_UTR | 45.0% | |
| ACTACCTAGGGAAACAGTGA+TGG | + | tig0040749:14750-14769 | None:intergenic | 45.0% | |
| ATCACTGTTTCCCTAGGTAG+TGG | - | tig0040749:14749-14768 | Msa1460200:five_prime_UTR | 45.0% | |
| AACACATCCTCCACTACCTA+GGG | + | tig0040749:14762-14781 | None:intergenic | 45.0% | |
| AAACACATCCTCCACTACCT+AGG | + | tig0040749:14763-14782 | None:intergenic | 45.0% | |
| AAGGACCCGATGAGGATATA+TGG | + | tig0040749:14823-14842 | None:intergenic | 45.0% | |
| !!! | TATAAATTTTTCATTAAAAA+AGG | + | tig0040749:5708-5727 | None:intergenic | 5.0% |
| !!! | TTTTAATGAAAAATTTATAT+TGG | - | tig0040749:5709-5728 | Msa1460200:intron | 5.0% |
| !! | TTTAATGAAAAATTTATATT+GGG | - | tig0040749:5710-5729 | Msa1460200:intron | 5.0% |
| !!! | TTATTGATTTTTTTTATAAT+TGG | - | tig0040749:10956-10975 | Msa1460200:intron | 5.0% |
| !!! | TATTGATTTTTTTTATAATT+GGG | - | tig0040749:10957-10976 | Msa1460200:intron | 5.0% |
| !!! | TAGTTTATTTTATTTATAAT+TGG | - | tig0040749:10987-11006 | Msa1460200:intron | 5.0% |
| !!! | AGTTTATTTTATTTATAATT+GGG | - | tig0040749:10988-11007 | Msa1460200:intron | 5.0% |
| !!! | TAAAAAAAAATTATAGTTTT+TGG | + | tig0040749:11452-11471 | None:intergenic | 5.0% |
| !! | TATAAATTGTAAAAAATAAA+AGG | - | tig0040749:12722-12741 | Msa1460200:intron | 5.0% |
| !!! | TGGGGCTTTTGGTTTAGCCA+TGG | + | tig0040749:5111-5130 | None:intergenic | 50.0% |
| !!! | AGGTTTCGCTTTGGGGCTTT+TGG | + | tig0040749:5122-5141 | None:intergenic | 50.0% |
| GAGGGTTTGGATGGATCAGA+TGG | + | tig0040749:5295-5314 | None:intergenic | 50.0% | |
| TCCATCCAAACCCTCTTACG+TGG | - | tig0040749:5300-5319 | Msa1460200:intron | 50.0% | |
| CTTTGCCACGTAAGAGGGTT+TGG | + | tig0040749:5308-5327 | None:intergenic | 50.0% | |
| GAATGAAACCTGTTCCTGCC+TGG | - | tig0040749:6022-6041 | Msa1460200:CDS | 50.0% | |
| CCCCTTTGCATTGGAGAAGA+AGG | + | tig0040749:6089-6108 | None:intergenic | 50.0% | |
| CTTCGATGTCAAAGTGAGGC+AGG | - | tig0040749:6115-6134 | Msa1460200:intron | 50.0% | |
| AGTGAGGCAGGGTGAAGAAT+AGG | - | tig0040749:6127-6146 | Msa1460200:intron | 50.0% | |
| GTGAGGCAGGGTGAAGAATA+GGG | - | tig0040749:6128-6147 | Msa1460200:intron | 50.0% | |
| AGGGTGAAGAATAGGGCTTG+AGG | - | tig0040749:6135-6154 | Msa1460200:intron | 50.0% | |
| GGGTGAAGAATAGGGCTTGA+GGG | - | tig0040749:6136-6155 | Msa1460200:intron | 50.0% | |
| AGGGCTTGAGGGATTAAACC+TGG | - | tig0040749:6147-6166 | Msa1460200:intron | 50.0% | |
| GGGCTTGAGGGATTAAACCT+GGG | - | tig0040749:6148-6167 | Msa1460200:intron | 50.0% | |
| GGCTTGAGGGATTAAACCTG+GGG | - | tig0040749:6149-6168 | Msa1460200:intron | 50.0% | |
| TAAACCTGGGGTTATCCCCT+TGG | - | tig0040749:6161-6180 | Msa1460200:intron | 50.0% | |
| TAATCCAAGGGGATAACCCC+AGG | + | tig0040749:6168-6187 | None:intergenic | 50.0% | |
| TTTACAGCGGAGCTGAACTG+AGG | + | tig0040749:6236-6255 | None:intergenic | 50.0% | |
| GCTCCGCTGTAAACCTGATT+TGG | - | tig0040749:6243-6262 | Msa1460200:intron | 50.0% | |
| !! | AGAGTGCTGCGCTTCAACAA+TGG | - | tig0040749:6275-6294 | Msa1460200:intron | 50.0% |
| TTTACGGGACCTCGGAGTTA+AGG | + | tig0040749:7327-7346 | None:intergenic | 50.0% | |
| GTTTCGGTACCTGTTCGATG+AGG | - | tig0040749:7780-7799 | Msa1460200:CDS | 50.0% | |
| CTTCTCCTTAGGCATAGCCA+TGG | - | tig0040749:8584-8603 | Msa1460200:intron | 50.0% | |
| AACATCGCTTCTACCTTCGG+CGG | + | tig0040749:8758-8777 | None:intergenic | 50.0% | |
| ! | AGTTTGTTCAGCTCCTACCC+AGG | + | tig0040749:8837-8856 | None:intergenic | 50.0% |
| ATCCCTGTTTCCCTTGGAAG+TGG | - | tig0040749:8952-8971 | Msa1460200:intron | 50.0% | |
| CTCCACTTCCAAGGGAAACA+GGG | + | tig0040749:8957-8976 | None:intergenic | 50.0% | |
| GTATGAACAAGGACCCGATG+GGG | + | tig0040749:9034-9053 | None:intergenic | 50.0% | |
| GAGTATGAACAAGGACCCGA+TGG | + | tig0040749:9036-9055 | None:intergenic | 50.0% | |
| TTCGAGGGTCACTAGAACTG+GGG | + | tig0040749:9423-9442 | None:intergenic | 50.0% | |
| !!! | GTCGGGATATTTTGGCCAAC+GGG | + | tig0040749:9458-9477 | None:intergenic | 50.0% |
| ! | CTCCATAGTTGAGTTGCAGG+AGG | - | tig0040749:9747-9766 | Msa1460200:intron | 50.0% |
| GCAGGGACCAAAACCAAAAC+TGG | + | tig0040749:11069-11088 | None:intergenic | 50.0% | |
| GCAGGGACCAAAACCAAAAC+TGG | + | tig0040749:11069-11088 | None:intergenic | 50.0% | |
| CCAGGGACGAAAACCAAAAC+TGG | + | tig0040749:11160-11179 | None:intergenic | 50.0% | |
| !!! | CCAGTTTTGGTTTTCGTCCC+TGG | - | tig0040749:11157-11176 | Msa1460200:intron | 50.0% |
| ! | CTTTTGTGCATATTGGGGCC+AGG | + | tig0040749:11298-11317 | None:intergenic | 50.0% |
| GCGGGGACTAAAACCAAAAC+TGG | - | tig0040749:11352-11371 | Msa1460200:intron | 50.0% | |
| TTCGTGTCCGTTGGTACTAC+TGG | - | tig0040749:11932-11951 | Msa1460200:intron | 50.0% | |
| GCGTCATTTCCATGGCTCAA+AGG | - | tig0040749:11978-11997 | Msa1460200:intron | 50.0% | |
| AATCAGTGCAGCGATCACAC+TGG | + | tig0040749:12383-12402 | None:intergenic | 50.0% | |
| ! | AGTGTGATCGCTGCACTGAT+TGG | - | tig0040749:12382-12401 | Msa1460200:intron | 50.0% |
| CGGGTGCGAAAGACATATCA+TGG | + | tig0040749:12834-12853 | None:intergenic | 50.0% | |
| ATATGTCTTTCGCACCCGTC+TGG | - | tig0040749:12836-12855 | Msa1460200:intron | 50.0% | |
| !! | CTTCCTTAGCTCTAAGGTCC+TGG | - | tig0040749:12958-12977 | Msa1460200:intron | 50.0% |
| GGATAAGTGCTCTTCGGATG+TGG | + | tig0040749:13448-13467 | None:intergenic | 50.0% | |
| TGGGCAGCTGTTTGATCCTT+AGG | + | tig0040749:13469-13488 | None:intergenic | 50.0% | |
| TATCAAAGATCTCGGAGGCC+AGG | + | tig0040749:13865-13884 | None:intergenic | 50.0% | |
| !! | CAACACAACGAAGGTGTTGG+AGG | + | tig0040749:14005-14024 | None:intergenic | 50.0% |
| CTCCAACACCTTCGTTGTGT+TGG | - | tig0040749:14003-14022 | Msa1460200:intron | 50.0% | |
| ! | ACCCAACACAACGAAGGTGT+TGG | + | tig0040749:14008-14027 | None:intergenic | 50.0% |
| CTTCACACCCAACACAACGA+AGG | + | tig0040749:14014-14033 | None:intergenic | 50.0% | |
| TCGTTGTGTTGGGTGTGAAG+AGG | - | tig0040749:14014-14033 | Msa1460200:intron | 50.0% | |
| TCCCACTTTGCCTGGACATA+TGG | - | tig0040749:14046-14065 | Msa1460200:intron | 50.0% | |
| GCCATATGTCCAGGCAAAGT+GGG | + | tig0040749:14050-14069 | None:intergenic | 50.0% | |
| TGCCATATGTCCAGGCAAAG+TGG | + | tig0040749:14051-14070 | None:intergenic | 50.0% | |
| CTTAATTAGGCAGCTAGGGG+AGG | + | tig0040749:14280-14299 | None:intergenic | 50.0% | |
| CTCCCCTAGCTGCCTAATTA+AGG | - | tig0040749:14278-14297 | Msa1460200:CDS | 50.0% | |
| GGGATGCATAGCTGCAATGA+AGG | + | tig0040749:14315-14334 | None:intergenic | 50.0% | |
| ! | ACTGTTTCCCTAGGTAGTGG+AGG | - | tig0040749:14752-14771 | Msa1460200:five_prime_UTR | 50.0% |
| GTATGAACAAGGACCCGATG+AGG | + | tig0040749:9034-9053 | None:intergenic | 50.0% | |
| CAACTGCCAACACGATTCAC+TGG | + | tig0040749:14924-14943 | None:intergenic | 50.0% | |
| ! | CAGTGAATCGTGTTGGCAGT+TGG | - | tig0040749:14922-14941 | Msa1460200:five_prime_UTR | 50.0% |
| GCCACGTAAGAGGGTTTGGA+TGG | + | tig0040749:5304-5323 | None:intergenic | 55.0% | |
| ! | GGGATCGAAGCTGATTCACG+AGG | - | tig0040749:5334-5353 | Msa1460200:intron | 55.0% |
| GCGGAGCTGAACTGAGGATA+AGG | + | tig0040749:6230-6249 | None:intergenic | 55.0% | |
| GGCTGCAGTGACTGGTAAGT+TGG | - | tig0040749:6409-6428 | Msa1460200:intron | 55.0% | |
| AGAGTAGGTTTGGGGAGCAG+GGG | + | tig0040749:6796-6815 | None:intergenic | 55.0% | |
| GAGAGTAGGTTTGGGGAGCA+GGG | + | tig0040749:6797-6816 | None:intergenic | 55.0% | |
| ! | GTGCTACTAGAGTTGCCACC+AGG | + | tig0040749:7540-7559 | None:intergenic | 55.0% |
| TGGATACTAAACGCCGCCGA+AGG | - | tig0040749:8742-8761 | Msa1460200:intron | 55.0% | |
| CCTCCACTTCCAAGGGAAAC+AGG | + | tig0040749:8958-8977 | None:intergenic | 55.0% | |
| CCTGTTTCCCTTGGAAGTGG+AGG | - | tig0040749:8955-8974 | Msa1460200:intron | 55.0% | |
| GGGTCACTAGAACTGGGGAT+GGG | + | tig0040749:9418-9437 | None:intergenic | 55.0% | |
| AGGGTCACTAGAACTGGGGA+TGG | + | tig0040749:9419-9438 | None:intergenic | 55.0% | |
| GCATGCGTTCCTCTAAACCG+TGG | - | tig0040749:11857-11876 | Msa1460200:intron | 55.0% | |
| CAAGAGACGTTCGTGTCCGT+TGG | - | tig0040749:11923-11942 | Msa1460200:intron | 55.0% | |
| TGTCCGTTGGTACTACTGGC+CGG | - | tig0040749:11936-11955 | Msa1460200:intron | 55.0% | |
| TGGCCGGAGGAGACAAAGAA+GGG | - | tig0040749:11952-11971 | Msa1460200:intron | 55.0% | |
| CGACCCTTCTTTGTCTCCTC+CGG | + | tig0040749:11958-11977 | None:intergenic | 55.0% | |
| CGGAGGAGACAAAGAAGGGT+CGG | - | tig0040749:11956-11975 | Msa1460200:intron | 55.0% | |
| AAGGGTCGGCGTCATTTCCA+TGG | - | tig0040749:11970-11989 | Msa1460200:intron | 55.0% | |
| !! | AGGAGTGAGAGCACCAGTAG+CGG | + | tig0040749:12142-12161 | None:intergenic | 55.0% |
| CTCCCAGGACCTTAGAGCTA+AGG | + | tig0040749:12964-12983 | None:intergenic | 55.0% | |
| !! | CTTAGCTCTAAGGTCCTGGG+AGG | - | tig0040749:12962-12981 | Msa1460200:intron | 55.0% |
| GGGTGAGTAGTGACGATGAG+TGG | + | tig0040749:13370-13389 | None:intergenic | 55.0% | |
| CTTCGGATGTGGCTCAGGTT+TGG | + | tig0040749:13437-13456 | None:intergenic | 55.0% | |
| ATGCTGCAGTTAGGCGGCTA+GGG | + | tig0040749:13962-13981 | None:intergenic | 55.0% | |
| ACAACCCGGATGCTGCAGTT+AGG | + | tig0040749:13971-13990 | None:intergenic | 55.0% | |
| TACCGGCCGGAGGAGTCAAT+TGG | - | tig0040749:5388-5407 | Msa1460200:intron | 60.0% | |
| ! | CACCAATTGACTCCTCCGGC+CGG | + | tig0040749:5393-5412 | None:intergenic | 60.0% |
| ! | CGGCCACCAATTGACTCCTC+CGG | + | tig0040749:5397-5416 | None:intergenic | 60.0% |
| ! | CGGAGGAGTCAATTGGTGGC+CGG | - | tig0040749:5395-5414 | Msa1460200:intron | 60.0% |
| GGTGGCCGGAGACAGTTTCA+CGG | - | tig0040749:5409-5428 | Msa1460200:intron | 60.0% | |
| CTCTGTATTCCGAGGCAGCC+AGG | + | tig0040749:6043-6062 | None:intergenic | 60.0% | |
| AGTGTGAGGGCTGCAGTGAC+TGG | - | tig0040749:6401-6420 | Msa1460200:intron | 60.0% | |
| GACAGAAGCAGCGAGCCAGA+AGG | + | tig0040749:6744-6763 | None:intergenic | 60.0% | |
| GGAGAGTAGGTTTGGGGAGC+AGG | + | tig0040749:6798-6817 | None:intergenic | 60.0% | |
| CCTCCGGCCAGTAGTACCAA+CGG | + | tig0040749:11942-11961 | None:intergenic | 60.0% | |
| CTGGCCGGAGGAGACAAAGA+AGG | - | tig0040749:11951-11970 | Msa1460200:intron | 60.0% | |
| GTGCTCTTCGGATGTGGCTC+AGG | + | tig0040749:13442-13461 | None:intergenic | 60.0% | |
| TGCTGCAGTTAGGCGGCTAG+GGG | + | tig0040749:13961-13980 | None:intergenic | 60.0% | |
| GATGCTGCAGTTAGGCGGCT+AGG | + | tig0040749:13963-13982 | None:intergenic | 60.0% | |
| AGCCGCCTAACTGCAGCATC+CGG | - | tig0040749:13963-13982 | Msa1460200:intron | 60.0% | |
| ACCCGGATGCTGCAGTTAGG+CGG | + | tig0040749:13968-13987 | None:intergenic | 60.0% | |
| CGTCCGGTGGTATTACCGGC+CGG | - | tig0040749:5375-5394 | Msa1460200:intron | 65.0% | |
| CCTCCGGCCGGTAATACCAC+CGG | + | tig0040749:5381-5400 | None:intergenic | 65.0% | |
| CGGCCGGAGGAGTCAATTGG+TGG | - | tig0040749:5391-5410 | Msa1460200:intron | 65.0% | |
| CTGTTCCTGCCTGGCTGCCT+CGG | - | tig0040749:6031-6050 | Msa1460200:CDS | 65.0% | |
| GTATTCCGAGGCAGCCAGGC+AGG | + | tig0040749:6039-6058 | None:intergenic | 65.0% | |
| CCGTTGGTACTACTGGCCGG+AGG | - | tig0040749:11939-11958 | Msa1460200:intron | 65.0% | |
| GCCGCCTAACTGCAGCATCC+GGG | - | tig0040749:13964-13983 | Msa1460200:intron | 65.0% | |
| GCTAGGGGAGGTCGCAAGGA+TGG | + | tig0040749:14268-14287 | None:intergenic | 65.0% | |
| CCGGTGGTATTACCGGCCGG+AGG | - | tig0040749:5378-5397 | Msa1460200:intron | 70.0% | |
| CGAGGCAGCCAGGCAGGAAC+AGG | + | tig0040749:6033-6052 | None:intergenic | 70.0% | |
| GGCAGCTAGGGGAGGTCGCA+AGG | + | tig0040749:14272-14291 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040749 | gene | 4831 | 14945 | 4831 | ID=Msa1460200;Name=Msa1460200 |
| tig0040749 | mRNA | 4831 | 14945 | 4831 | ID=Msa1460200-mRNA-1;Parent=Msa1460200;Name=Msa1460200-mRNA-1;_AED=0.19;_eAED=0.20;_QI=279|0.44|0.4|1|0.55|0.5|10|312|378 |
| tig0040749 | exon | 4831 | 5169 | 4831 | ID=Msa1460200-mRNA-1:exon:22613;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 5991 | 6126 | 5991 | ID=Msa1460200-mRNA-1:exon:22612;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 7601 | 7743 | 7601 | ID=Msa1460200-mRNA-1:exon:22611;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 7750 | 7934 | 7750 | ID=Msa1460200-mRNA-1:exon:22610;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 10737 | 10758 | 10737 | ID=Msa1460200-mRNA-1:exon:22609;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 11740 | 11875 | 11740 | ID=Msa1460200-mRNA-1:exon:22608;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 13354 | 13422 | 13354 | ID=Msa1460200-mRNA-1:exon:22607;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 14162 | 14304 | 14162 | ID=Msa1460200-mRNA-1:exon:22606;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 14311 | 14507 | 14311 | ID=Msa1460200-mRNA-1:exon:22605;Parent=Msa1460200-mRNA-1 |
| tig0040749 | exon | 14588 | 14945 | 14588 | ID=Msa1460200-mRNA-1:exon:22604;Parent=Msa1460200-mRNA-1 |
| tig0040749 | five_prime_UTR | 14667 | 14945 | 14667 | ID=Msa1460200-mRNA-1:five_prime_utr;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 14588 | 14666 | 14588 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 14311 | 14507 | 14311 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 14162 | 14304 | 14162 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 13354 | 13422 | 13354 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 11740 | 11875 | 11740 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 10737 | 10758 | 10737 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 7750 | 7934 | 7750 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 7601 | 7743 | 7601 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 5991 | 6126 | 5991 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | CDS | 5143 | 5169 | 5143 | ID=Msa1460200-mRNA-1:cds;Parent=Msa1460200-mRNA-1 |
| tig0040749 | three_prime_UTR | 4831 | 5142 | 4831 | ID=Msa1460200-mRNA-1:three_prime_utr;Parent=Msa1460200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
