AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413670 MtrunA17_Chr1g0188161 95.062 81 4 0 1 81 1 81 4.90e-43 135
Msa1413670 MtrunA17_Chr1g0188131 82.716 81 12 2 1 80 1 80 1.69e-33 111
Msa1413670 MtrunA17_Chr1g0184941 56.897 58 25 0 23 80 24 81 1.82e-20 78.2
Msa1413670 MtrunA17_Chr1g0148341 38.554 83 45 1 4 80 14 96 7.34e-15 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413670 AT3G22942.1 76.364 55 13 0 26 80 18 72 4.31e-20 77.4
Msa1413670 AT3G63420.1 54.688 64 29 0 17 80 7 70 1.69e-17 70.5
Msa1413670 AT3G63420.2 54.688 64 29 0 17 80 7 70 1.69e-17 70.5
Msa1413670 AT3G63420.3 54.688 64 29 0 17 80 47 110 1.72e-16 68.9

Find 53 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTCAATCAATATCATTTC+TGG 0.152641 tig0024044:+1168 Msa1413670:five_prime_UTR
TCTTGAACACTTGTCCTTAT+TGG 0.158502 tig0024044:+1147 Msa1413670:five_prime_UTR
CATCTTTCTTTCCATATAAA+TGG 0.162880 tig0024044:+1193 Msa1413670:five_prime_UTR
AAACTATCCTGAAAAGTTTA+TGG 0.164858 tig0024044:-4029 Msa1413670:intergenic
CTTGAACACTTGTCCTTATT+GGG 0.256893 tig0024044:+1148 Msa1413670:five_prime_UTR
GAACAAAGACTCCATTTATA+TGG 0.260197 tig0024044:-1204 Msa1413670:intergenic
TTTAGTTCAGGTCTGTGTTT+TGG 0.275164 tig0024044:-1034 Msa1413670:intergenic
ATCTGCAGCCTTGCGAATCT+TGG 0.292697 tig0024044:-3862 Msa1413670:intergenic
TCTGCAGCCTTGCGAATCTT+GGG 0.295792 tig0024044:-3861 Msa1413670:intergenic
CGAATACTTGTGAGACTGTT+TGG 0.299419 tig0024044:+3952 Msa1413670:three_prime_UTR
TGATATTGATTGACCCAATA+AGG 0.303799 tig0024044:-1161 Msa1413670:intergenic
GAATACATGCTGAACTTAAA+AGG 0.312374 tig0024044:+1405 Msa1413670:CDS
TTCACAAACAAACACACTTC+TGG 0.318890 tig0024044:+1080 Msa1413670:five_prime_UTR
AAGAGGGTTCAGTTTAGTTC+AGG 0.319187 tig0024044:-1046 Msa1413670:intergenic
AATACGCTGAAAACAACTTA+TGG 0.324350 tig0024044:-4005 Msa1413670:intergenic
TTGGTCCCTTGAATCGCTTA+TGG 0.331606 tig0024044:+3819 Msa1413670:three_prime_UTR
TGGTCCCTTGAATCGCTTAT+GGG 0.359334 tig0024044:+3820 Msa1413670:three_prime_UTR
TTCTGGTTTGACAGAACAAT+TGG 0.384254 tig0024044:+3800 Msa1413670:three_prime_UTR
TAGACCAATCAGGTATATAA+AGG 0.391133 tig0024044:-4147 Msa1413670:intergenic
TTTATATACCTGATTGGTCT+AGG 0.403706 tig0024044:+4149 Msa1413670:three_prime_UTR
TATTCCTTTATATACCTGAT+TGG 0.409643 tig0024044:+4143 Msa1413670:three_prime_UTR
GAATACTTGTGAGACTGTTT+GGG 0.440792 tig0024044:+3953 Msa1413670:three_prime_UTR
TTATGGGATCGGTGGTTTGA+AGG 0.442573 tig0024044:+3836 Msa1413670:three_prime_UTR
GGTCAATCAATATCATTTCT+GGG 0.454364 tig0024044:+1169 Msa1413670:five_prime_UTR
GTGATGGGTCATGTGATTCT+CGG 0.459142 tig0024044:-1333 Msa1413670:intergenic
GGTCATGTGATTCTCGGATT+CGG 0.459276 tig0024044:-1327 Msa1413670:intergenic
TGTAAATTCCTAGACCAATC+AGG 0.466719 tig0024044:-4157 Msa1413670:intergenic
AAAATGAATGCAGGAAGAGC+TGG 0.468685 tig0024044:+3480 Msa1413670:intron
TGAACTTAAAAGGTTGGAAC+AGG 0.469117 tig0024044:+1415 Msa1413670:CDS
CCTTGAATCGCTTATGGGAT+CGG 0.474836 tig0024044:+3825 Msa1413670:three_prime_UTR
CTGCAGCCTTGCGAATCTTG+GGG 0.477925 tig0024044:-3860 Msa1413670:intergenic
TACGATGGAAGCAAAGGATC+AGG 0.480893 tig0024044:-3689 Msa1413670:intergenic
ACAGGAAACAAGGTACTTAG+AGG 0.494385 tig0024044:+1433 Msa1413670:CDS
CCGATCCCATAAGCGATTCA+AGG 0.501198 tig0024044:-3825 Msa1413670:intergenic
ACATGCTGAACTTAAAAGGT+TGG 0.526371 tig0024044:+1409 Msa1413670:CDS
CTGAGACTGAACCCGGTGAT+GGG 0.537392 tig0024044:-1348 Msa1413670:intergenic
GAATCACATGACCCATCACC+GGG 0.542597 tig0024044:+1337 Msa1413670:CDS
AGAATCACATGACCCATCAC+CGG 0.550612 tig0024044:+1336 Msa1413670:CDS
TTAGCATCAGAAAATGCAAT+CGG 0.557138 tig0024044:+1298 Msa1413670:exon
CATCAGAAAATGCAATCGGA+TGG 0.564403 tig0024044:+1302 Msa1413670:exon
TTTCTTCTTCAGATACTAGA+GGG 0.566543 tig0024044:+1375 Msa1413670:CDS
ACAGAGACAGAAACAGAGAC+AGG 0.567091 tig0024044:-1103 Msa1413670:intergenic
GAACTGCAAAGTCTATGAAA+CGG 0.571007 tig0024044:-1237 Msa1413670:intergenic
CTTTCTTCTTCAGATACTAG+AGG 0.572274 tig0024044:+1374 Msa1413670:CDS
ACTGAGACTGAACCCGGTGA+TGG 0.572686 tig0024044:-1349 Msa1413670:intergenic
TGCAGCCTTGCGAATCTTGG+GGG 0.580172 tig0024044:-3859 Msa1413670:intergenic
CGATCCCATAAGCGATTCAA+GGG 0.587732 tig0024044:-3824 Msa1413670:intergenic
TGATGCTAAGATGGTAACAA+TGG 0.593641 tig0024044:-1284 Msa1413670:intergenic
TGAATCGCTTATGGGATCGG+TGG 0.603469 tig0024044:+3828 Msa1413670:three_prime_UTR
ATCAGAAAATGCAATCGGAT+GGG 0.609307 tig0024044:+1303 Msa1413670:exon
AAAGAGACTGAGACTGAACC+CGG 0.616487 tig0024044:-1355 Msa1413670:intergenic
AAAGGTTGGAACAGGAAACA+AGG 0.637890 tig0024044:+1423 Msa1413670:CDS
AGTCTCACAAGTATTCGTGT+CGG 0.712449 tig0024044:-3946 Msa1413660:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGAAATAAAAGTATAAAA+TGG - tig0024044:2139-2158 Msa1413670:intergenic 10.0%
!!! TTATGTGATTTTTTTTTTTT+TGG + tig0024044:2783-2802 Msa1413670:intron 10.0%
!!! TTTTTTTTTTGGAAATTTTT+AGG + tig0024044:2794-2813 Msa1413670:intron 10.0%
!!! AATTTTTTTTTTCTTTCTAT+AGG + tig0024044:2864-2883 Msa1413670:intron 10.0%
!!! ATTGATAATTTATAAGTTTT+TGG + tig0024044:3189-3208 Msa1413670:intron 10.0%
!! AAAATTATGTTAACAGAATT+TGG + tig0024044:1870-1889 Msa1413670:intron 15.0%
!! AAATTATGTTAACAGAATTT+GGG + tig0024044:1871-1890 Msa1413670:intron 15.0%
!! TAACTGAATTAATATACTAT+TGG - tig0024044:2433-2452 Msa1413670:intergenic 15.0%
!!! ATTTTCTCAAAAAAATTTAC+TGG + tig0024044:3067-3086 Msa1413670:intron 15.0%
!!! ATTCTTATTTCTTACTAATA+AGG - tig0024044:3276-3295 Msa1413670:intergenic 15.0%
!! GCTTAAAATTAATACTAAAA+TGG + tig0024044:3550-3569 Msa1413670:intron 15.0%
!! AATTCAAAGTTAAACTAATA+TGG - tig0024044:3620-3639 Msa1413670:intergenic 15.0%
!!! TTTGAAGTTTTGTTCTTTAT+TGG + tig0024044:1485-1504 Msa1413670:intron 20.0%
!!! TTGAAGTTTTGTTCTTTATT+GGG + tig0024044:1486-1505 Msa1413670:intron 20.0%
!!! ATTTTATATGAGTATGGTTT+AGG + tig0024044:1527-1546 Msa1413670:intron 20.0%
!! TTGAGTGTAATTATATATGT+CGG + tig0024044:1709-1728 Msa1413670:intron 20.0%
!! TGGATAGTAAATTATGATTA+TGG + tig0024044:1761-1780 Msa1413670:intron 20.0%
!! GTAAATTATGATTATGGTTT+AGG + tig0024044:1767-1786 Msa1413670:intron 20.0%
!!! TTGTATTTGTATTGACAAAT+TGG - tig0024044:2072-2091 Msa1413670:intergenic 20.0%
!! AAAATTTCTACAAAATGAAC+AGG - tig0024044:2215-2234 Msa1413670:intergenic 20.0%
!!! TTTTGTAGAAATTTTCCAAA+AGG + tig0024044:2220-2239 Msa1413670:intron 20.0%
!! ACTTTCTTAAGATTTATTTC+TGG - tig0024044:2308-2327 Msa1413670:intergenic 20.0%
!!! TTTTTTTGGAAATTTTTAGG+TGG + tig0024044:2797-2816 Msa1413670:intron 20.0%
!!! TTTTTGAGAAAATAATGTGA+TGG - tig0024044:3060-3079 Msa1413670:intergenic 20.0%
!! TGAAAACACAAACATATAAA+TGG - tig0024044:3309-3328 Msa1413670:intergenic 20.0%
!!! TAACTAATGATACAATTTTC+TGG + tig0024044:3783-3802 Msa1413670:three_prime_UTR 20.0%
!!! AATAACTACTCAGTTTTATT+TGG + tig0024044:3900-3919 Msa1413670:three_prime_UTR 20.0%
! CATCTTTCTTTCCATATAAA+TGG + tig0024044:1193-1212 Msa1413670:five_prime_UTR 25.0%
! AAGAACAAAACTTCAAAACA+TGG - tig0024044:1482-1501 Msa1413670:intergenic 25.0%
!! CAAAGGATTTTATATGAGTA+TGG + tig0024044:1521-1540 Msa1413670:intron 25.0%
!! GTTTAATCTTTTGATCATGT+TGG + tig0024044:1572-1591 Msa1413670:intron 25.0%
!! CTTTTGATATTACTTACCTA+AGG + tig0024044:1816-1835 Msa1413670:intron 25.0%
! GTTTAAAGATGTATGAACAT+TGG + tig0024044:1944-1963 Msa1413670:intron 25.0%
!! TTACTATGATTGATGATTTG+TGG + tig0024044:2024-2043 Msa1413670:intron 25.0%
! CAATACAAATACAACTATAC+AGG + tig0024044:2078-2097 Msa1413670:intron 25.0%
! ATGACCTAAATGCAAATAAA+TGG - tig0024044:2247-2266 Msa1413670:intergenic 25.0%
! AGTTAAGAGGATATACATAA+AGG - tig0024044:2463-2482 Msa1413670:intergenic 25.0%
!! TTTGAATTTTATTCGAGTGA+GGG + tig0024044:2548-2567 Msa1413670:intron 25.0%
! AAATCATTCTTTCTATAGTC+TGG + tig0024044:2639-2658 Msa1413670:intron 25.0%
!! TTTTACCAAATGTTTGTTTG+TGG + tig0024044:2820-2839 Msa1413670:intron 25.0%
! TTTCTATAGGATAAAAGTTG+AGG + tig0024044:2877-2896 Msa1413670:intron 25.0%
! GTTGGCAATTTGATATATTA+TGG + tig0024044:3019-3038 Msa1413670:intron 25.0%
!! GAAAATAATGTGATGGAAAA+AGG - tig0024044:3053-3072 Msa1413670:intergenic 25.0%
!!! ACTTCTGTAAGGAAATTTTT+TGG + tig0024044:3372-3391 Msa1413670:intron 25.0%
! TTCACTAAAAAAATGAATGC+AGG + tig0024044:3471-3490 Msa1413670:intron 25.0%
! AAACTATCCTGAAAAGTTTA+TGG - tig0024044:4032-4051 Msa1413670:intergenic 25.0%
! TATTCCTTTATATACCTGAT+TGG + tig0024044:4143-4162 Msa1413670:three_prime_UTR 25.0%
GTGAAAAATTCAGAGAAAGA+GGG - tig0024044:1065-1084 None:intergenic 30.0%
TGTGAAAAATTCAGAGAAAG+AGG - tig0024044:1066-1085 None:intergenic 30.0%
! TGATATTGATTGACCCAATA+AGG - tig0024044:1164-1183 Msa1413670:intergenic 30.0%
GGTCAATCAATATCATTTCT+GGG + tig0024044:1169-1188 Msa1413670:five_prime_UTR 30.0%
GAACAAAGACTCCATTTATA+TGG - tig0024044:1207-1226 Msa1413670:intergenic 30.0%
TTAGCATCAGAAAATGCAAT+CGG + tig0024044:1298-1317 Msa1413670:exon 30.0%
TTTCTTCTTCAGATACTAGA+GGG + tig0024044:1375-1394 Msa1413670:CDS 30.0%
GAATACATGCTGAACTTAAA+AGG + tig0024044:1405-1424 Msa1413670:CDS 30.0%
!!! AAGTTTTGTTCTTTATTGGG+TGG + tig0024044:1489-1508 Msa1413670:intron 30.0%
! TTGGGTGGTTTTTATATCAA+AGG + tig0024044:1504-1523 Msa1413670:intron 30.0%
! TTTAGGAAGTATGATGAGTA+TGG + tig0024044:1784-1803 Msa1413670:intron 30.0%
ATCAATACATTGATCACCTT+AGG - tig0024044:1835-1854 Msa1413670:intergenic 30.0%
!!! TAACAAAGTGTGTTTTTAGC+TGG + tig0024044:1912-1931 Msa1413670:intron 30.0%
! TACAGGCTTGATGATTTAAA+TGG + tig0024044:2095-2114 Msa1413670:intron 30.0%
! ATGCAAATAAATGGACCTTT+TGG - tig0024044:2238-2257 Msa1413670:intergenic 30.0%
AGGTCCATTTATTTGCATTT+AGG + tig0024044:2240-2259 Msa1413670:intron 30.0%
GAATTTACTCAGACTTGATA+AGG - tig0024044:2368-2387 Msa1413670:intergenic 30.0%
TAAGAGGATATACATAAAGG+CGG - tig0024044:2460-2479 Msa1413670:intergenic 30.0%
ATGTATATCCTCTTAACTAC+TGG + tig0024044:2465-2484 Msa1413670:intron 30.0%
!! TTATCACTCGTTTTTACTAG+TGG + tig0024044:2521-2540 Msa1413670:intron 30.0%
! CTTTGAATTTTATTCGAGTG+AGG + tig0024044:2547-2566 Msa1413670:intron 30.0%
AATTTGTAGGACATATCTCA+AGG - tig0024044:2733-2752 Msa1413670:intergenic 30.0%
GAGTGTATTTCGAAATTTGT+AGG - tig0024044:2746-2765 Msa1413670:intergenic 30.0%
CTGGAGAGATATAAACAAAA+TGG - tig0024044:3241-3260 Msa1413670:intergenic 30.0%
!! AATAAGGTTTTGTCAAATGC+TGG - tig0024044:3260-3279 Msa1413670:intergenic 30.0%
! TTTTCACTGTTCTGTCTTAT+TGG + tig0024044:3323-3342 Msa1413670:intron 30.0%
!!! ATTTTTTGGAGCTTTTTCTG+TGG + tig0024044:3386-3405 Msa1413670:intron 30.0%
AATACGCTGAAAACAACTTA+TGG - tig0024044:4008-4027 Msa1413670:intergenic 30.0%
! CGTATTTCCATAAACTTTTC+AGG + tig0024044:4022-4041 Msa1413670:three_prime_UTR 30.0%
TAGACCAATCAGGTATATAA+AGG - tig0024044:4150-4169 Msa1413670:intergenic 30.0%
!! TTTAGTTCAGGTCTGTGTTT+TGG - tig0024044:1037-1056 None:intergenic 35.0%
TTCACAAACAAACACACTTC+TGG + tig0024044:1080-1099 Msa1413670:five_prime_UTR 35.0%
TCTTGAACACTTGTCCTTAT+TGG + tig0024044:1147-1166 Msa1413670:five_prime_UTR 35.0%
CTTGAACACTTGTCCTTATT+GGG + tig0024044:1148-1167 Msa1413670:five_prime_UTR 35.0%
GGGTCAATCAATATCATTTC+TGG + tig0024044:1168-1187 Msa1413670:five_prime_UTR 35.0%
GAACTGCAAAGTCTATGAAA+CGG - tig0024044:1240-1259 Msa1413670:intergenic 35.0%
TGATGCTAAGATGGTAACAA+TGG - tig0024044:1287-1306 Msa1413670:intergenic 35.0%
! TGCATTTTCTGATGCTAAGA+TGG - tig0024044:1296-1315 Msa1413670:intergenic 35.0%
ATCAGAAAATGCAATCGGAT+GGG + tig0024044:1303-1322 Msa1413670:exon 35.0%
CTTTCTTCTTCAGATACTAG+AGG + tig0024044:1374-1393 Msa1413670:CDS 35.0%
ACATGCTGAACTTAAAAGGT+TGG + tig0024044:1409-1428 Msa1413670:CDS 35.0%
TGAACTTAAAAGGTTGGAAC+AGG + tig0024044:1415-1434 Msa1413670:CDS 35.0%
AGGAAGAACTATGATGAGTA+TGG + tig0024044:1547-1566 Msa1413670:intron 35.0%
ATTATTAGCACTGTCTGTGT+CGG - tig0024044:1689-1708 Msa1413670:intergenic 35.0%
TATATATGTCGGAGTTGTGT+CGG + tig0024044:1720-1739 Msa1413670:intron 35.0%
! TTTAGCTTCATTCTTCAGTG+AGG - tig0024044:2002-2021 Msa1413670:intergenic 35.0%
TGAAGAAATGATGCGATTCT+AGG + tig0024044:2331-2350 Msa1413670:intron 35.0%
TTTACTCAGACTTGATAAGG+AGG - tig0024044:2365-2384 Msa1413670:intergenic 35.0%
AAGGTTAACGGAGTTAGTTA+GGG - tig0024044:2397-2416 Msa1413670:intergenic 35.0%
TAACTCCGTTAACCTTCTAT+TGG + tig0024044:2401-2420 Msa1413670:intron 35.0%
ACTAGCCAATAGAAGGTTAA+CGG - tig0024044:2409-2428 Msa1413670:intergenic 35.0%
TATTGGAACTAGCCAATAGA+AGG - tig0024044:2416-2435 Msa1413670:intergenic 35.0%
AAGAGGATATACATAAAGGC+GGG - tig0024044:2459-2478 Msa1413670:intergenic 35.0%
GTGTACCACAAACAAACATT+TGG - tig0024044:2828-2847 Msa1413670:intergenic 35.0%
CATTGTATCTACCTACACTT+AGG - tig0024044:2987-3006 Msa1413670:intergenic 35.0%
ACAATGTGAGTTCACATAGT+TGG + tig0024044:3001-3020 Msa1413670:intron 35.0%
TGTCCTAAAGCAACACATTA+TGG + tig0024044:3130-3149 Msa1413670:intron 35.0%
!! GTTCCATAATGTGTTGCTTT+AGG - tig0024044:3136-3155 Msa1413670:intergenic 35.0%
ATTATGGAACACACTACAGA+GGG + tig0024044:3146-3165 Msa1413670:intron 35.0%
AAGAGCTGGAAAAACTTGAA+AGG + tig0024044:3494-3513 Msa1413670:CDS 35.0%
CTGGCAACAAAAATAGAAGA+TGG - tig0024044:3644-3663 Msa1413670:intergenic 35.0%
!!! CACAAGAAAGTTTTGAGAAG+CGG - tig0024044:3718-3737 Msa1413670:intergenic 35.0%
!! TTCTGGTTTGACAGAACAAT+TGG + tig0024044:3800-3819 Msa1413670:three_prime_UTR 35.0%
GAATACTTGTGAGACTGTTT+GGG + tig0024044:3953-3972 Msa1413670:three_prime_UTR 35.0%
! AAGAGGGTTCAGTTTAGTTC+AGG - tig0024044:1049-1068 None:intergenic 40.0%
CATCAGAAAATGCAATCGGA+TGG + tig0024044:1302-1321 Msa1413670:exon 40.0%
AAAGGTTGGAACAGGAAACA+AGG + tig0024044:1423-1442 Msa1413670:CDS 40.0%
! ACAGGAAACAAGGTACTTAG+AGG + tig0024044:1433-1452 Msa1413670:CDS 40.0%
AACAACAGTGGATGGATACT+CGG - tig0024044:1972-1991 Msa1413670:intergenic 40.0%
CAGTTGTGAGATGAGAATTG+TGG + tig0024044:2175-2194 Msa1413670:intron 40.0%
GAAGGTTAACGGAGTTAGTT+AGG - tig0024044:2398-2417 Msa1413670:intergenic 40.0%
GGTAGTTGCACTACTTATCT+GGG + tig0024044:2585-2604 Msa1413670:intron 40.0%
GTAGTTGCACTACTTATCTG+GGG + tig0024044:2586-2605 Msa1413670:intron 40.0%
TATCTGGGGAGTTAACTACA+TGG + tig0024044:2600-2619 Msa1413670:intron 40.0%
TTCTATCAACAGTTCAGCCT+CGG + tig0024044:2663-2682 Msa1413670:intron 40.0%
CTGACTTAATTGTATGTCCG+AGG - tig0024044:2683-2702 Msa1413670:intergenic 40.0%
AGCTAATCCATCAGGAAAGA+TGG - tig0024044:2707-2726 Msa1413670:intergenic 40.0%
CAAGGTTAAGCTAATCCATC+AGG - tig0024044:2715-2734 Msa1413670:intergenic 40.0%
!! TGATGATGTGAGAGTGTCTT+AGG + tig0024044:2901-2920 Msa1413670:intron 40.0%
!! TTGTTTACTAGTGTCGACGA+GGG - tig0024044:2941-2960 Msa1413670:intergenic 40.0%
CATTATGGAACACACTACAG+AGG + tig0024044:3145-3164 Msa1413670:intron 40.0%
!! TCTGTCTTATTGGCTCTTTG+CGG + tig0024044:3333-3352 Msa1413670:intron 40.0%
TTTGCGGCATGACTTTCATA+CGG + tig0024044:3349-3368 Msa1413670:intron 40.0%
CTTTCATACGGACTTCTGTA+AGG + tig0024044:3361-3380 Msa1413670:intron 40.0%
AAAATGAATGCAGGAAGAGC+TGG + tig0024044:3480-3499 Msa1413670:intron 40.0%
GCTGGAAAAACTTGAAAGGA+TGG + tig0024044:3498-3517 Msa1413670:CDS 40.0%
TTGTACACTACTCAGCAATC+TGG - tig0024044:3663-3682 Msa1413670:intergenic 40.0%
! TTTGAGAAGCGGTTTTACGA+TGG - tig0024044:3707-3726 Msa1413670:intergenic 40.0%
AGTCTCACAAGTATTCGTGT+CGG - tig0024044:3949-3968 Msa1413670:intergenic 40.0%
CGAATACTTGTGAGACTGTT+TGG + tig0024044:3952-3971 Msa1413670:three_prime_UTR 40.0%
ACAGAGACAGAAACAGAGAC+AGG - tig0024044:1106-1125 Msa1413670:intergenic 45.0%
GGTCATGTGATTCTCGGATT+CGG - tig0024044:1330-1349 Msa1413670:intergenic 45.0%
!! GTGATGGGTCATGTGATTCT+CGG - tig0024044:1336-1355 Msa1413670:intergenic 45.0%
AGAATCACATGACCCATCAC+CGG + tig0024044:1336-1355 Msa1413670:CDS 45.0%
AAAGAGACTGAGACTGAACC+CGG - tig0024044:1358-1377 Msa1413670:intergenic 45.0%
GTATCCGTGCTTCATAGCAT+AGG - tig0024044:1643-1662 Msa1413670:intergenic 45.0%
! ACGGAGTTAGTTAGGGTGTT+GGG - tig0024044:2390-2409 Msa1413670:intergenic 45.0%
AACGGAGTTAGTTAGGGTGT+TGG - tig0024044:2391-2410 Msa1413670:intergenic 45.0%
CGGTAGTTGCACTACTTATC+TGG + tig0024044:2584-2603 Msa1413670:intron 45.0%
AACTACATGGTGAGAGAGAG+AGG + tig0024044:2613-2632 Msa1413670:intron 45.0%
AGTCAGTCCATCTTTCCTGA+TGG + tig0024044:2697-2716 Msa1413670:intron 45.0%
!! CTTGTTTACTAGTGTCGACG+AGG - tig0024044:2942-2961 Msa1413670:intergenic 45.0%
TAGCCAGTCTTCCTAAGTGT+AGG + tig0024044:2973-2992 Msa1413670:intron 45.0%
CTACCTACACTTAGGAAGAC+TGG - tig0024044:2979-2998 Msa1413670:intergenic 45.0%
!! TTTTCTGTGGACGCTGATTG+TGG + tig0024044:3399-3418 Msa1413670:intron 45.0%
TACGATGGAAGCAAAGGATC+AGG - tig0024044:3692-3711 Msa1413670:intergenic 45.0%
! CGGTTTTACGATGGAAGCAA+AGG - tig0024044:3698-3717 Msa1413670:intergenic 45.0%
TTGGTCCCTTGAATCGCTTA+TGG + tig0024044:3819-3838 Msa1413670:three_prime_UTR 45.0%
TGGTCCCTTGAATCGCTTAT+GGG + tig0024044:3820-3839 Msa1413670:three_prime_UTR 45.0%
CGATCCCATAAGCGATTCAA+GGG - tig0024044:3827-3846 Msa1413670:intergenic 45.0%
CCTTGAATCGCTTATGGGAT+CGG + tig0024044:3825-3844 Msa1413670:three_prime_UTR 45.0%
TTATGGGATCGGTGGTTTGA+AGG + tig0024044:3836-3855 Msa1413670:three_prime_UTR 45.0%
GAATCACATGACCCATCACC+GGG + tig0024044:1337-1356 Msa1413670:CDS 50.0%
GCCTCCTATGCTATGAAGCA+CGG + tig0024044:1636-1655 Msa1413670:intron 50.0%
TCCGTGCTTCATAGCATAGG+AGG - tig0024044:1640-1659 Msa1413670:intergenic 50.0%
GACTCGCTAACAACAGTGGA+TGG - tig0024044:1980-1999 Msa1413670:intergenic 50.0%
TGAGGACTCGCTAACAACAG+TGG - tig0024044:1984-2003 Msa1413670:intergenic 50.0%
ACAGGAGGCCAGTAGTTAAG+AGG - tig0024044:2476-2495 Msa1413670:intergenic 50.0%
GTGAGGGATGTGTTGAGACT+CGG + tig0024044:2564-2583 Msa1413670:intron 50.0%
TACATGGTGAGAGAGAGAGG+TGG + tig0024044:2616-2635 Msa1413670:intron 50.0%
CCGATCCCATAAGCGATTCA+AGG - tig0024044:3828-3847 Msa1413670:intergenic 50.0%
TGAATCGCTTATGGGATCGG+TGG + tig0024044:3828-3847 Msa1413670:three_prime_UTR 50.0%
TCTGCAGCCTTGCGAATCTT+GGG - tig0024044:3864-3883 Msa1413670:intergenic 50.0%
ATCTGCAGCCTTGCGAATCT+TGG - tig0024044:3865-3884 Msa1413670:intergenic 50.0%
CTGAGACTGAACCCGGTGAT+GGG - tig0024044:1351-1370 Msa1413670:intergenic 55.0%
ACTGAGACTGAACCCGGTGA+TGG - tig0024044:1352-1371 Msa1413670:intergenic 55.0%
TGAAGCACGGATACCGACAC+CGG + tig0024044:1649-1668 Msa1413670:intron 55.0%
! TGTCGGAGTTGTGTCGGTGT+CGG + tig0024044:1726-1745 Msa1413670:intron 55.0%
! CGATTTAGAGTCGCGACAGG+AGG - tig0024044:2491-2510 Msa1413670:intergenic 55.0%
!! CGTCGATTTAGAGTCGCGAC+AGG - tig0024044:2494-2513 Msa1413670:intergenic 55.0%
TGCAGCCTTGCGAATCTTGG+GGG - tig0024044:3862-3881 Msa1413670:intergenic 55.0%
CTGCAGCCTTGCGAATCTTG+GGG - tig0024044:3863-3882 Msa1413670:intergenic 55.0%
GTTCGTGTCGTGTCCGGTGT+CGG - tig0024044:1665-1684 Msa1413670:intergenic 60.0%
! GTCGGTGTTCGTGTCGTGTC+CGG - tig0024044:1671-1690 Msa1413670:intergenic 60.0%
!! GAGTTGTGTCGGTGTCGGAC+AGG + tig0024044:1731-1750 Msa1413670:intron 60.0%
!! GTCGGTGTCGGACAGGACTA+TGG + tig0024044:1738-1757 Msa1413670:intron 60.0%
! GGTGTCGGACAGGACTATGG+TGG + tig0024044:1741-1760 Msa1413670:intron 60.0%
GAAGGCCCCCAAGATTCGCA+AGG + tig0024044:3854-3873 Msa1413670:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0024044 gene 988 4169 988 ID=Msa1413670;Name=Msa1413670
tig0024044 mRNA 988 4169 988 ID=Msa1413670-mRNA-1;Parent=Msa1413670;Name=Msa1413670-mRNA-1;_AED=0.03;_eAED=0.03;_QI=323|1|1|1|0.5|0.66|3|457|81
tig0024044 exon 988 1454 988 ID=Msa1413670-mRNA-1:exon:21359;Parent=Msa1413670-mRNA-1
tig0024044 exon 3493 3545 3493 ID=Msa1413670-mRNA-1:exon:21360;Parent=Msa1413670-mRNA-1
tig0024044 exon 3664 4169 3664 ID=Msa1413670-mRNA-1:exon:21361;Parent=Msa1413670-mRNA-1
tig0024044 five_prime_UTR 988 1310 988 ID=Msa1413670-mRNA-1:five_prime_utr;Parent=Msa1413670-mRNA-1
tig0024044 CDS 1311 1454 1311 ID=Msa1413670-mRNA-1:cds;Parent=Msa1413670-mRNA-1
tig0024044 CDS 3493 3545 3493 ID=Msa1413670-mRNA-1:cds;Parent=Msa1413670-mRNA-1
tig0024044 CDS 3664 3712 3664 ID=Msa1413670-mRNA-1:cds;Parent=Msa1413670-mRNA-1
tig0024044 three_prime_UTR 3713 4169 3713 ID=Msa1413670-mRNA-1:three_prime_utr;Parent=Msa1413670-mRNA-1
Gene Sequence

>Msa1413670

ATGCAATCGGATGGGTCCGAATCCGAGAATCACATGACCCATCACCGGGTTCAGTCTCAGTCTCTTTCTTCTTCAGATACTAGAGGGAAACATAGAATACATGCTGAACTTAAAAGGTTGGAACAGGAAACAAGGTACTTAGAGGAAGAGCTGGAAAAACTTGAAAGGATGGATAAAGCATCAACAACATGCAAAGAATTGCTGAGTAGTGTACAAACAAGACCTGATCCTTTGCTTCCATCGTAA
Protein sequence

>Msa1413670

MQSDGSESENHMTHHRVQSQSLSSSDTRGKHRIHAELKRLEQETRYLEEELEKLERMDKASTTCKELLSSVQTRPDPLLPS*