Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418650 | sp|Q8L7N3|CENPX_ARATH | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.85e-39 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418650 | A0A072UQV7 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 5.83e-67 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1208600 | Msa1418650 | 0.837294 | 5.657713e-57 | -8.615850e-47 |
| Msa1208720 | Msa1418650 | 0.940575 | 1.845522e-100 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418650 | MtrunA17_Chr4g0058121 | 99.029 | 103 | 1 | 0 | 1 | 103 | 1 | 103 | 1.12e-70 | 205 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418650 | AT1G78790.4 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1418650 | AT1G78790.1 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1418650 | AT1G78790.3 | 66.667 | 99 | 33 | 0 | 5 | 103 | 6 | 104 | 1.88e-40 | 129 |
| Msa1418650 | AT1G78790.2 | 53.535 | 99 | 28 | 1 | 5 | 103 | 6 | 86 | 1.66e-25 | 91.7 |
Find 29 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCTTAATGAAAATTAAA+AGG | 0.174624 | tig0024623:-36937 | Msa1418650:three_prime_UTR |
| ATTCCATCATGAAGCGTATT+TGG | 0.181659 | tig0024623:-38389 | Msa1418650:CDS |
| AGAAGTTGTCCGATTCTTCT+TGG | 0.300405 | tig0024623:+37473 | None:intergenic |
| TCAAATTGAAGCTACTCATT+TGG | 0.368792 | tig0024623:-37104 | Msa1418650:CDS |
| TGTTGCAACCAATGATGCTT+TGG | 0.379913 | tig0024623:-38249 | Msa1418650:CDS |
| AAGAAGAATCGGACAACTTC+TGG | 0.380642 | tig0024623:-37471 | Msa1418650:intron |
| AGCTTACCTGTGAACTTCTC+CGG | 0.383589 | tig0024623:-37291 | Msa1418650:CDS |
| CTCGGAATCCAAAGCATCAT+TGG | 0.387476 | tig0024623:+38241 | None:intergenic |
| TATCTTAATGAAAATTAAAA+GGG | 0.400946 | tig0024623:-36936 | Msa1418650:three_prime_UTR |
| TCCATTTGTGATTGCAGCAA+AGG | 0.417096 | tig0024623:+38534 | None:intergenic |
| ATTTGGACATTGCGAACCTT+AGG | 0.435108 | tig0024623:-38372 | Msa1418650:intron |
| TCCTTTGCTGCAATCACAAA+TGG | 0.445414 | tig0024623:-38535 | Msa1418650:exon |
| AACTATTACTCTCCCTATCA+TGG | 0.471346 | tig0024623:-37016 | Msa1418650:three_prime_UTR |
| CTGGATCGTCCAAGAAGAAT+CGG | 0.493954 | tig0024623:-37482 | Msa1418650:CDS |
| GCTTACCTGTGAACTTCTCC+GGG | 0.512267 | tig0024623:-37290 | Msa1418650:CDS |
| AACAAATGATACTCGCTTGG+AGG | 0.514612 | tig0024623:+38585 | None:intergenic |
| CAATGATGCTTTGGATTCCG+AGG | 0.519977 | tig0024623:-38240 | Msa1418650:intron |
| TTACTGCTACAGGTAGCAGC+TGG | 0.525226 | tig0024623:-37501 | Msa1418650:intron |
| CACAACAAATGATACTCGCT+TGG | 0.535669 | tig0024623:+38582 | None:intergenic |
| AGCCGTACAGATTCGAAGGT+TGG | 0.537616 | tig0024623:+38507 | None:intergenic |
| TGTCCAAATACGCTTCATGA+TGG | 0.552980 | tig0024623:+38386 | None:intergenic |
| ACAGGTAAGCTTCAAAGCAC+TGG | 0.559640 | tig0024623:+37303 | None:intergenic |
| ACAAATGATACTCGCTTGGA+GGG | 0.563750 | tig0024623:+38586 | None:intergenic |
| AAATACGCTTCATGATGGAA+TGG | 0.583453 | tig0024623:+38391 | None:intergenic |
| GGATAGCCGTACAGATTCGA+AGG | 0.605653 | tig0024623:+38503 | None:intergenic |
| TATTGCTATTGCAGAGACTG+AGG | 0.624787 | tig0024623:-37134 | Msa1418650:CDS |
| TAGAAATCTAAAAGCAACTG+AGG | 0.627717 | tig0024623:+37070 | None:intergenic |
| ATTGCTATTGCAGAGACTGA+GGG | 0.649753 | tig0024623:-37133 | Msa1418650:CDS |
| ATTGCAGAGACTGAGGGTGA+TGG | 0.654914 | tig0024623:-37127 | Msa1418650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCTTAATGAAAATTAAA+AGG | - | tig0024623:38569-38588 | Msa1418650:five_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | - | tig0024623:38570-38589 | Msa1418650:five_prime_UTR | 10.0% |
| !! | TTATCTTAATGAAAATTAAA+AGG | - | tig0024623:38569-38588 | Msa1418650:five_prime_UTR | 10.0% |
| !! | TATCTTAATGAAAATTAAAA+GGG | - | tig0024623:38570-38589 | Msa1418650:five_prime_UTR | 10.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | + | tig0024623:37913-37932 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | + | tig0024623:37914-37933 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | + | tig0024623:38259-38278 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | + | tig0024623:38260-38279 | None:intergenic | 15.0% |
| !! | TAGCTAAAATATTTAATGTA+GGG | + | tig0024623:37913-37932 | None:intergenic | 15.0% |
| !! | ATAGCTAAAATATTTAATGT+AGG | + | tig0024623:37914-37933 | None:intergenic | 15.0% |
| !!! | TCTCTTTTAAAGTTTAATAT+GGG | + | tig0024623:38259-38278 | None:intergenic | 15.0% |
| !!! | TTCTCTTTTAAAGTTTAATA+TGG | + | tig0024623:38260-38279 | None:intergenic | 15.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | - | tig0024623:37487-37506 | Msa1418650:CDS | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | + | tig0024623:37753-37772 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | - | tig0024623:37758-37777 | Msa1418650:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | - | tig0024623:37781-37800 | Msa1418650:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | + | tig0024623:37822-37841 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | - | tig0024623:37842-37861 | Msa1418650:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | + | tig0024623:37903-37922 | None:intergenic | 20.0% |
| !! | TTTAGTGTATGCTTTATAAA+TGG | - | tig0024623:37487-37506 | Msa1418650:CDS | 20.0% |
| !! | ATGAAGAAAAAAGATTGAAA+TGG | + | tig0024623:37753-37772 | None:intergenic | 20.0% |
| !!! | ATCTTTTTTCTTCATTACTT+AGG | - | tig0024623:37758-37777 | Msa1418650:intron | 20.0% |
| !!! | TATTGCAACATTTGTTTTTA+TGG | - | tig0024623:37781-37800 | Msa1418650:intron | 20.0% |
| !!! | AGATAAAGTTTTCTGTAAAA+TGG | + | tig0024623:37822-37841 | None:intergenic | 20.0% |
| !! | ACAATATTGTAGTTTATAAC+TGG | - | tig0024623:37842-37861 | Msa1418650:intron | 20.0% |
| !! | ATTTAATGTAGGGAAAATTA+AGG | + | tig0024623:37903-37922 | None:intergenic | 20.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | + | tig0024623:37079-37098 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | - | tig0024623:37085-37104 | Msa1418650:CDS | 25.0% |
| ! | AACAGAAAATTTGAAAACCT+CGG | + | tig0024623:37286-37305 | None:intergenic | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | - | tig0024623:37442-37461 | Msa1418650:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | - | tig0024623:37846-37865 | Msa1418650:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | - | tig0024623:37847-37866 | Msa1418650:intron | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | - | tig0024623:38520-38539 | Msa1418650:exon | 25.0% |
| ! | GAATGAAGAAATTGAAGATT+AGG | + | tig0024623:37079-37098 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATTCAATAAC+AGG | - | tig0024623:37085-37104 | Msa1418650:CDS | 25.0% |
| ! | AACAGAAAATTTGAAAACCT+CGG | + | tig0024623:37286-37305 | None:intergenic | 25.0% |
| ! | GGTTAATTAAGAAATTTGTG+TGG | - | tig0024623:37442-37461 | Msa1418650:intron | 25.0% |
| ! | TATTGTAGTTTATAACTGGT+TGG | - | tig0024623:37846-37865 | Msa1418650:intron | 25.0% |
| ! | ATTGTAGTTTATAACTGGTT+GGG | - | tig0024623:37847-37866 | Msa1418650:intron | 25.0% |
| !! | GAAAAACTGATCAAGATTTT+TGG | - | tig0024623:38520-38539 | Msa1418650:exon | 25.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | + | tig0024623:37027-37046 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | + | tig0024623:37051-37070 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | + | tig0024623:37364-37383 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | - | tig0024623:37390-37409 | Msa1418650:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | - | tig0024623:37413-37432 | Msa1418650:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | - | tig0024623:37493-37512 | Msa1418650:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | - | tig0024623:37494-37513 | Msa1418650:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | + | tig0024623:37742-37761 | None:intergenic | 30.0% | |
| GCAACGATTAAGAATTAAGT+AGG | + | tig0024623:37962-37981 | None:intergenic | 30.0% | |
| ACAGAAAGGTTATGTCAATA+TGG | + | tig0024623:38328-38347 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | - | tig0024623:38402-38421 | Msa1418650:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | + | tig0024623:38439-38458 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | + | tig0024623:38505-38524 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | + | tig0024623:38506-38525 | None:intergenic | 30.0% |
| ATTAGAGAAGAAAGGGTTAT+AGG | + | tig0024623:37027-37046 | None:intergenic | 30.0% | |
| AAGAAAATTAGCATGAAGAG+TGG | + | tig0024623:37051-37070 | None:intergenic | 30.0% | |
| ATTGACATGAATATCATCTC+AGG | + | tig0024623:37364-37383 | None:intergenic | 30.0% | |
| !! | ATGCTACTTGTTGTTGAATT+CGG | - | tig0024623:37390-37409 | Msa1418650:intron | 30.0% |
| !!! | GGATTTTGGGTTAAGAAATT+TGG | - | tig0024623:37413-37432 | Msa1418650:intron | 30.0% |
| GTATGCTTTATAAATGGAAG+CGG | - | tig0024623:37493-37512 | Msa1418650:intron | 30.0% | |
| TATGCTTTATAAATGGAAGC+GGG | - | tig0024623:37494-37513 | Msa1418650:intron | 30.0% | |
| AGATTGAAATGGAAACAGTT+TGG | + | tig0024623:37742-37761 | None:intergenic | 30.0% | |
| GCAACGATTAAGAATTAAGT+AGG | + | tig0024623:37962-37981 | None:intergenic | 30.0% | |
| ACAGAAAGGTTATGTCAATA+TGG | + | tig0024623:38328-38347 | None:intergenic | 30.0% | |
| TCAAATTGAAGCTACTCATT+TGG | - | tig0024623:38402-38421 | Msa1418650:CDS | 30.0% | |
| TAGAAATCTAAAAGCAACTG+AGG | + | tig0024623:38439-38458 | None:intergenic | 30.0% | |
| ! | TTTTCACTAGATCCATGATA+GGG | + | tig0024623:38505-38524 | None:intergenic | 30.0% |
| ! | TTTTTCACTAGATCCATGAT+AGG | + | tig0024623:38506-38525 | None:intergenic | 30.0% |
| GAGTGGAATTAGAGAAGAAA+GGG | + | tig0024623:37034-37053 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | + | tig0024623:37035-37054 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | + | tig0024623:37118-37137 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | - | tig0024623:37117-37136 | Msa1418650:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | - | tig0024623:37327-37346 | Msa1418650:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | - | tig0024623:37391-37410 | Msa1418650:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | - | tig0024623:37400-37419 | Msa1418650:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | - | tig0024623:37421-37440 | Msa1418650:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | - | tig0024623:37448-37467 | Msa1418650:intron | 35.0% | |
| GTGATTATCATTCTGTTGTC+CGG | - | tig0024623:38065-38084 | Msa1418650:intron | 35.0% | |
| ATCTCCACCAAATAAGAAAC+CGG | + | tig0024623:38087-38106 | None:intergenic | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | + | tig0024623:38323-38342 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | - | tig0024623:38490-38509 | Msa1418650:intron | 35.0% | |
| GAGTGGAATTAGAGAAGAAA+GGG | + | tig0024623:37034-37053 | None:intergenic | 35.0% | |
| AGAGTGGAATTAGAGAAGAA+AGG | + | tig0024623:37035-37054 | None:intergenic | 35.0% | |
| ! | AAATACGCTTCATGATGGAA+TGG | + | tig0024623:37118-37137 | None:intergenic | 35.0% |
| ATTCCATCATGAAGCGTATT+TGG | - | tig0024623:37117-37136 | Msa1418650:CDS | 35.0% | |
| !! | CACGCTATGTGTTTGTTATT+TGG | - | tig0024623:37327-37346 | Msa1418650:intron | 35.0% |
| !! | TGCTACTTGTTGTTGAATTC+GGG | - | tig0024623:37391-37410 | Msa1418650:intron | 35.0% |
| ! | TTGTTGAATTCGGGGATTTT+GGG | - | tig0024623:37400-37419 | Msa1418650:intron | 35.0% |
| GGTTAAGAAATTTGGCTAAC+AGG | - | tig0024623:37421-37440 | Msa1418650:intron | 35.0% | |
| TTAAGAAATTTGTGTGGCCT+TGG | - | tig0024623:37448-37467 | Msa1418650:intron | 35.0% | |
| GTGATTATCATTCTGTTGTC+CGG | - | tig0024623:38065-38084 | Msa1418650:intron | 35.0% | |
| ATCTCCACCAAATAAGAAAC+CGG | + | tig0024623:38087-38106 | None:intergenic | 35.0% | |
| AAGGTTATGTCAATATGGCA+TGG | + | tig0024623:38323-38342 | None:intergenic | 35.0% | |
| AACTATTACTCTCCCTATCA+TGG | - | tig0024623:38490-38509 | Msa1418650:intron | 35.0% | |
| CACAACAAATGATACTCGCT+TGG | + | tig0024623:36927-36946 | None:intergenic | 40.0% | |
| TCCTTTGCTGCAATCACAAA+TGG | - | tig0024623:36971-36990 | Msa1418650:three_prime_UTR | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | + | tig0024623:36975-36994 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | - | tig0024623:36997-37016 | Msa1418650:three_prime_UTR | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | + | tig0024623:37123-37142 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | - | tig0024623:37134-37153 | Msa1418650:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | + | tig0024623:37153-37172 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | - | tig0024623:37257-37276 | Msa1418650:intron | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | - | tig0024623:37392-37411 | Msa1418650:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | - | tig0024623:37399-37418 | Msa1418650:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | + | tig0024623:37468-37487 | None:intergenic | 40.0% |
| ! | CTGAAGTGTCAGTGTAACAT+GGG | + | tig0024623:37600-37619 | None:intergenic | 40.0% |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | + | tig0024623:37601-37620 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | - | tig0024623:37605-37624 | Msa1418650:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | + | tig0024623:37654-37673 | None:intergenic | 40.0% |
| TGCACTGTCTGTATTGCAAA+TGG | - | tig0024623:37979-37998 | Msa1418650:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | - | tig0024623:37980-37999 | Msa1418650:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | - | tig0024623:37995-38014 | Msa1418650:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | + | tig0024623:38036-38055 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | - | tig0024623:38035-38054 | Msa1418650:intron | 40.0% | |
| CTGTTGTCCGGTTTCTTATT+TGG | - | tig0024623:38077-38096 | Msa1418650:intron | 40.0% | |
| ! | TTGTCCGGTTTCTTATTTGG+TGG | - | tig0024623:38080-38099 | Msa1418650:intron | 40.0% |
| ATGTCACACTGTAGTTGTCT+TGG | - | tig0024623:38121-38140 | Msa1418650:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | - | tig0024623:38134-38153 | Msa1418650:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | + | tig0024623:38182-38201 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | + | tig0024623:38237-38256 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | - | tig0024623:38336-38355 | Msa1418650:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | - | tig0024623:38372-38391 | Msa1418650:intron | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | - | tig0024623:38373-38392 | Msa1418650:CDS | 40.0% |
| AACAAATGATACTCGCTTGG+AGG | + | tig0024623:36924-36943 | None:intergenic | 40.0% | |
| CACAACAAATGATACTCGCT+TGG | + | tig0024623:36927-36946 | None:intergenic | 40.0% | |
| TCCTTTGCTGCAATCACAAA+TGG | - | tig0024623:36971-36990 | Msa1418650:three_prime_UTR | 40.0% | |
| TCCATTTGTGATTGCAGCAA+AGG | + | tig0024623:36975-36994 | None:intergenic | 40.0% | |
| AACCAACCTTCGAATCTGTA+CGG | - | tig0024623:36997-37016 | Msa1418650:three_prime_UTR | 40.0% | |
| TGTCCAAATACGCTTCATGA+TGG | + | tig0024623:37123-37142 | None:intergenic | 40.0% | |
| ATTTGGACATTGCGAACCTT+AGG | - | tig0024623:37134-37153 | Msa1418650:CDS | 40.0% | |
| ! | AAGAGAAAGTGTGTGACCTA+AGG | + | tig0024623:37153-37172 | None:intergenic | 40.0% |
| TGTTGCAACCAATGATGCTT+TGG | - | tig0024623:37257-37276 | Msa1418650:intron | 40.0% | |
| !! | GCTACTTGTTGTTGAATTCG+GGG | - | tig0024623:37392-37411 | Msa1418650:intron | 40.0% |
| ! | GTTGTTGAATTCGGGGATTT+TGG | - | tig0024623:37399-37418 | Msa1418650:intron | 40.0% |
| ! | ACCTAACTCTAAAAGCTCCA+AGG | + | tig0024623:37468-37487 | None:intergenic | 40.0% |
| ! | CTGAAGTGTCAGTGTAACAT+GGG | + | tig0024623:37600-37619 | None:intergenic | 40.0% |
| ! | TCTGAAGTGTCAGTGTAACA+TGG | + | tig0024623:37601-37620 | None:intergenic | 40.0% |
| ACACTGACACTTCAGATTGA+AGG | - | tig0024623:37605-37624 | Msa1418650:intron | 40.0% | |
| ! | GTAACTACATGTGTCGCTAT+CGG | + | tig0024623:37654-37673 | None:intergenic | 40.0% |
| TGCACTGTCTGTATTGCAAA+TGG | - | tig0024623:37979-37998 | Msa1418650:intron | 40.0% | |
| GCACTGTCTGTATTGCAAAT+GGG | - | tig0024623:37980-37999 | Msa1418650:intron | 40.0% | |
| !! | CAAATGGGTTTTACTGCTAC+AGG | - | tig0024623:37995-38014 | Msa1418650:intron | 40.0% |
| AGAAGTTGTCCGATTCTTCT+TGG | + | tig0024623:38036-38055 | None:intergenic | 40.0% | |
| AAGAAGAATCGGACAACTTC+TGG | - | tig0024623:38035-38054 | Msa1418650:intron | 40.0% | |
| CTGTTGTCCGGTTTCTTATT+TGG | - | tig0024623:38077-38096 | Msa1418650:intron | 40.0% | |
| ! | TTGTCCGGTTTCTTATTTGG+TGG | - | tig0024623:38080-38099 | Msa1418650:intron | 40.0% |
| ATGTCACACTGTAGTTGTCT+TGG | - | tig0024623:38121-38140 | Msa1418650:intron | 40.0% | |
| GTTGTCTTGGCATTGCAAAT+TGG | - | tig0024623:38134-38153 | Msa1418650:intron | 40.0% | |
| ATTAGCTGCATGGGAAAAGA+CGG | + | tig0024623:38182-38201 | None:intergenic | 40.0% | |
| GTGAACCTGTAACAAAAACC+CGG | + | tig0024623:38237-38256 | None:intergenic | 40.0% | |
| TAACCTTTCTGTTGATGCAG+AGG | - | tig0024623:38336-38355 | Msa1418650:intron | 40.0% | |
| ! | TATTGCTATTGCAGAGACTG+AGG | - | tig0024623:38372-38391 | Msa1418650:intron | 40.0% |
| ! | ATTGCTATTGCAGAGACTGA+GGG | - | tig0024623:38373-38392 | Msa1418650:CDS | 40.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | + | tig0024623:37268-37287 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | - | tig0024623:37266-37285 | Msa1418650:intron | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | - | tig0024623:37464-37483 | Msa1418650:intron | 45.0% |
| ATAACCCCGACACTTCAGAT+TGG | - | tig0024623:37536-37555 | Msa1418650:intron | 45.0% | |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | - | tig0024623:37614-37633 | Msa1418650:intron | 45.0% |
| AACTGACACACACTCGTACA+CGG | + | tig0024623:37719-37738 | None:intergenic | 45.0% | |
| CTGGATCGTCCAAGAAGAAT+CGG | - | tig0024623:38024-38043 | Msa1418650:intron | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | + | tig0024623:38206-38225 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | - | tig0024623:38215-38234 | Msa1418650:intron | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | + | tig0024623:38224-38243 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | - | tig0024623:38229-38248 | Msa1418650:intron | 45.0% |
| ! | CTCGGAATCCAAAGCATCAT+TGG | + | tig0024623:37268-37287 | None:intergenic | 45.0% |
| ! | CAATGATGCTTTGGATTCCG+AGG | - | tig0024623:37266-37285 | Msa1418650:intron | 45.0% |
| !!! | GCCTTGGAGCTTTTAGAGTT+AGG | - | tig0024623:37464-37483 | Msa1418650:intron | 45.0% |
| ATAACCCCGACACTTCAGAT+TGG | - | tig0024623:37536-37555 | Msa1418650:intron | 45.0% | |
| ! | CTTCAGATTGAAGGTGTGTC+CGG | - | tig0024623:37614-37633 | Msa1418650:intron | 45.0% |
| AACTGACACACACTCGTACA+CGG | + | tig0024623:37719-37738 | None:intergenic | 45.0% | |
| CTGGATCGTCCAAGAAGAAT+CGG | - | tig0024623:38024-38043 | Msa1418650:intron | 45.0% | |
| ACAGGTAAGCTTCAAAGCAC+TGG | + | tig0024623:38206-38225 | None:intergenic | 45.0% | |
| AGCTTACCTGTGAACTTCTC+CGG | - | tig0024623:38215-38234 | Msa1418650:intron | 45.0% | |
| AAAAACCCGGAGAAGTTCAC+AGG | + | tig0024623:38224-38243 | None:intergenic | 45.0% | |
| ! | CTTCTCCGGGTTTTTGTTAC+AGG | - | tig0024623:38229-38248 | Msa1418650:intron | 45.0% |
| AGCCGTACAGATTCGAAGGT+TGG | + | tig0024623:37002-37021 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | + | tig0024623:37006-37025 | None:intergenic | 50.0% | |
| !! | GCTTCCAATCTGAAGTGTCG+GGG | + | tig0024623:37543-37562 | None:intergenic | 50.0% |
| ! | CGCTTCCAATCTGAAGTGTC+GGG | + | tig0024623:37544-37563 | None:intergenic | 50.0% |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | + | tig0024623:37545-37564 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | - | tig0024623:37542-37561 | Msa1418650:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | - | tig0024623:37543-37562 | Msa1418650:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | - | tig0024623:37553-37572 | Msa1418650:intron | 50.0% |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | - | tig0024623:37860-37879 | Msa1418650:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | - | tig0024623:38005-38024 | Msa1418650:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | + | tig0024623:38191-38210 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | + | tig0024623:38192-38211 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | - | tig0024623:38216-38235 | Msa1418650:intron | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | + | tig0024623:38342-38361 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | - | tig0024623:38379-38398 | Msa1418650:CDS | 50.0% | |
| AGCCGTACAGATTCGAAGGT+TGG | + | tig0024623:37002-37021 | None:intergenic | 50.0% | |
| GGATAGCCGTACAGATTCGA+AGG | + | tig0024623:37006-37025 | None:intergenic | 50.0% | |
| !! | GCTTCCAATCTGAAGTGTCG+GGG | + | tig0024623:37543-37562 | None:intergenic | 50.0% |
| ! | CGCTTCCAATCTGAAGTGTC+GGG | + | tig0024623:37544-37563 | None:intergenic | 50.0% |
| ! | CCGCTTCCAATCTGAAGTGT+CGG | + | tig0024623:37545-37564 | None:intergenic | 50.0% |
| CCGACACTTCAGATTGGAAG+CGG | - | tig0024623:37542-37561 | Msa1418650:intron | 50.0% | |
| CGACACTTCAGATTGGAAGC+GGG | - | tig0024623:37543-37562 | Msa1418650:intron | 50.0% | |
| !! | GATTGGAAGCGGGTTTTGTG+TGG | - | tig0024623:37553-37572 | Msa1418650:intron | 50.0% |
| ! | ACTGGTTGGGTGCTATCGAT+AGG | - | tig0024623:37860-37879 | Msa1418650:intron | 50.0% |
| TTACTGCTACAGGTAGCAGC+TGG | - | tig0024623:38005-38024 | Msa1418650:intron | 50.0% | |
| !! | AGCACTGGCATTAGCTGCAT+GGG | + | tig0024623:38191-38210 | None:intergenic | 50.0% |
| !! | AAGCACTGGCATTAGCTGCA+TGG | + | tig0024623:38192-38211 | None:intergenic | 50.0% |
| GCTTACCTGTGAACTTCTCC+GGG | - | tig0024623:38216-38235 | Msa1418650:intron | 50.0% | |
| CAGCCTCTGCATCAACAGAA+AGG | + | tig0024623:38342-38361 | None:intergenic | 50.0% | |
| ATTGCAGAGACTGAGGGTGA+TGG | - | tig0024623:38379-38398 | Msa1418650:CDS | 50.0% | |
| !! | ATCGGTGTCGTGTCGCATAC+CGG | + | tig0024623:37636-37655 | None:intergenic | 55.0% |
| CTCGTACACGGTAGTGACAC+AGG | + | tig0024623:37707-37726 | None:intergenic | 55.0% | |
| !! | ATCGGTGTCGTGTCGCATAC+CGG | + | tig0024623:37636-37655 | None:intergenic | 55.0% |
| CTCGTACACGGTAGTGACAC+AGG | + | tig0024623:37707-37726 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024623 | gene | 36922 | 38606 | 36922 | ID=Msa1418650;Name=Msa1418650 |
| tig0024623 | mRNA | 36922 | 38606 | 36922 | ID=Msa1418650-mRNA-1;Parent=Msa1418650;Name=Msa1418650-mRNA-1;_AED=0.31;_eAED=0.31;_QI=68|1|1|1|1|1|6|147|103 |
| tig0024623 | exon | 36922 | 37172 | 36922 | ID=Msa1418650-mRNA-1:exon:475;Parent=Msa1418650-mRNA-1 |
| tig0024623 | exon | 37278 | 37331 | 37278 | ID=Msa1418650-mRNA-1:exon:474;Parent=Msa1418650-mRNA-1 |
| tig0024623 | exon | 37472 | 37511 | 37472 | ID=Msa1418650-mRNA-1:exon:473;Parent=Msa1418650-mRNA-1 |
| tig0024623 | exon | 38241 | 38281 | 38241 | ID=Msa1418650-mRNA-1:exon:472;Parent=Msa1418650-mRNA-1 |
| tig0024623 | exon | 38373 | 38421 | 38373 | ID=Msa1418650-mRNA-1:exon:471;Parent=Msa1418650-mRNA-1 |
| tig0024623 | exon | 38515 | 38606 | 38515 | ID=Msa1418650-mRNA-1:exon:470;Parent=Msa1418650-mRNA-1 |
| tig0024623 | five_prime_UTR | 38539 | 38606 | 38539 | ID=Msa1418650-mRNA-1:five_prime_utr;Parent=Msa1418650-mRNA-1 |
| tig0024623 | CDS | 38515 | 38538 | 38515 | ID=Msa1418650-mRNA-1:cds;Parent=Msa1418650-mRNA-1 |
| tig0024623 | CDS | 38373 | 38421 | 38373 | ID=Msa1418650-mRNA-1:cds;Parent=Msa1418650-mRNA-1 |
| tig0024623 | CDS | 38241 | 38281 | 38241 | ID=Msa1418650-mRNA-1:cds;Parent=Msa1418650-mRNA-1 |
| tig0024623 | CDS | 37472 | 37511 | 37472 | ID=Msa1418650-mRNA-1:cds;Parent=Msa1418650-mRNA-1 |
| tig0024623 | CDS | 37278 | 37331 | 37278 | ID=Msa1418650-mRNA-1:cds;Parent=Msa1418650-mRNA-1 |
| tig0024623 | CDS | 37069 | 37172 | 37069 | ID=Msa1418650-mRNA-1:cds;Parent=Msa1418650-mRNA-1 |
| tig0024623 | three_prime_UTR | 36922 | 37068 | 36922 | ID=Msa1418650-mRNA-1:three_prime_utr;Parent=Msa1418650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
