AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422260 MtrunA17_Chr3g0129421 91.477 352 25 1 1 352 1 347 0.0 570
Msa1422260 MtrunA17_Chr8g0383591 45.788 273 125 8 29 293 5 262 9.34e-64 205
Msa1422260 MtrunA17_Chr7g0221471 75.000 72 18 0 167 238 43 114 1.80e-32 119
Msa1422260 MtrunA17_Chr7g0221501 73.239 71 19 0 165 235 41 111 1.15e-31 117
Msa1422260 MtrunA17_Chr4g0044871 60.185 108 36 3 131 231 45 152 9.65e-30 114
Msa1422260 MtrunA17_Chr8g0375031 73.016 63 17 0 168 230 118 180 4.43e-29 112
Msa1422260 MtrunA17_Chr4g0044881 82.759 58 10 0 174 231 113 170 2.81e-28 110
Msa1422260 MtrunA17_Chr2g0295421 68.919 74 21 1 169 240 88 161 1.17e-27 109
Msa1422260 MtrunA17_Chr4g0044901 82.456 57 10 0 175 231 96 152 1.47e-27 108
Msa1422260 MtrunA17_Chr4g0044911 82.456 57 10 0 175 231 96 152 1.56e-27 108
Msa1422260 MtrunA17_Chr8g0344961 73.913 69 14 1 168 232 113 181 2.61e-27 110
Msa1422260 MtrunA17_Chr2g0334031 73.913 69 14 1 168 232 106 174 4.30e-27 110
Msa1422260 MtrunA17_Chr2g0282651 46.032 126 61 2 121 239 12 137 4.81e-27 107
Msa1422260 MtrunA17_Chr1g0195151 63.750 80 19 2 172 241 74 153 1.30e-25 104
Msa1422260 MtrunA17_Chr5g0396911 45.082 122 52 2 135 241 64 185 2.19e-25 104
Msa1422260 MtrunA17_Chr2g0316931 69.231 65 20 0 174 238 30 94 3.00e-25 101
Msa1422260 MtrunA17_Chr3g0131601 88.889 63 7 0 172 234 73 135 5.03e-25 102
Msa1422260 MtrunA17_Chr5g0438831 74.138 58 15 0 174 231 45 102 1.30e-24 101
Msa1422260 MtrunA17_Chr4g0055761 63.529 85 25 2 163 241 128 212 1.54e-24 101
Msa1422260 MtrunA17_Chr4g0055801 67.532 77 22 2 161 234 138 214 3.26e-24 101
Msa1422260 MtrunA17_Chr2g0283171 70.968 62 17 1 171 231 59 120 4.40e-24 97.1
Msa1422260 MtrunA17_Chr4g0055781 66.234 77 23 2 161 234 86 162 5.54e-24 99.4
Msa1422260 MtrunA17_Chr3g0099871 75.862 58 14 0 174 231 26 83 5.58e-24 98.6
Msa1422260 MtrunA17_Chr1g0158971 66.176 68 19 1 172 235 112 179 1.19e-23 100
Msa1422260 MtrunA17_Chr8g0335321 63.235 68 24 1 173 239 94 161 1.83e-23 96.7
Msa1422260 MtrunA17_Chr4g0046161 54.023 87 38 2 151 235 32 118 2.09e-23 94.0
Msa1422260 MtrunA17_Chr8g0335311 68.254 63 19 1 173 234 94 156 2.29e-23 96.3
Msa1422260 MtrunA17_Chr5g0438801 70.690 58 17 0 174 231 50 107 3.67e-23 97.8
Msa1422260 MtrunA17_Chr8g0335331 72.131 61 16 1 175 234 125 185 4.50e-23 95.5
Msa1422260 MtrunA17_Chr2g0297331 61.972 71 26 1 163 232 2 72 5.23e-23 93.2
Msa1422260 MtrunA17_Chr2g0283181 70.968 62 17 1 171 231 145 206 1.04e-22 96.7
Msa1422260 MtrunA17_Chr4g0063751 46.465 99 45 2 173 271 5 95 2.68e-22 93.6
Msa1422260 MtrunA17_Chr1g0196871 64.286 70 24 1 173 241 14 83 2.69e-22 90.1
Msa1422260 MtrunA17_Chr4g0002631 64.516 62 22 0 172 233 5 66 3.17e-22 92.8
Msa1422260 MtrunA17_Chr3g0126321 68.966 58 18 0 173 230 111 168 3.48e-22 96.3
Msa1422260 MtrunA17_Chr7g0250711 70.000 60 17 1 173 231 58 117 4.00e-22 92.8
Msa1422260 MtrunA17_Chr2g0333011 66.129 62 21 0 173 234 5 66 4.01e-22 92.0
Msa1422260 MtrunA17_Chr7g0250731 70.000 60 17 1 173 231 59 118 4.30e-22 92.8
Msa1422260 MtrunA17_Chr2g0282621 67.692 65 17 1 167 231 11 71 7.42e-22 91.3
Msa1422260 MtrunA17_Chr7g0250721 70.000 60 17 1 173 231 59 118 7.90e-22 92.4
Msa1422260 MtrunA17_Chr4g0003421 67.797 59 19 0 173 231 38 96 1.22e-21 92.8
Msa1422260 MtrunA17_Chr1g0184081 67.188 64 20 1 174 236 20 83 1.36e-21 89.7
Msa1422260 MtrunA17_Chr3g0137174 62.903 62 23 0 172 233 5 66 1.37e-21 90.9
Msa1422260 MtrunA17_Chr4g0026881 68.750 64 19 1 172 234 94 157 1.69e-21 92.0
Msa1422260 MtrunA17_Chr1g0170531 65.152 66 22 1 170 234 84 149 1.69e-21 92.0
Msa1422260 MtrunA17_Chr6g0461941 83.333 66 11 0 170 235 15 80 2.53e-21 90.9
Msa1422260 MtrunA17_Chr1g0186731 64.615 65 22 1 168 231 14 78 2.99e-21 89.0
Msa1422260 MtrunA17_Chr7g0232261 59.155 71 28 1 175 245 61 130 7.22e-21 90.1
Msa1422260 MtrunA17_Chr7g0275841 54.795 73 32 1 175 247 28 99 9.22e-21 88.2
Msa1422260 MtrunA17_Chr8g0367911 66.667 60 20 0 171 230 40 99 9.27e-21 91.3
Msa1422260 MtrunA17_Chr7g0261101 72.131 61 16 1 172 231 17 77 1.25e-20 87.0
Msa1422260 MtrunA17_Chr8g0334801 57.534 73 30 1 175 247 52 123 1.62e-20 88.6
Msa1422260 MtrunA17_Chr5g0425561 67.797 59 19 0 173 231 171 229 1.87e-20 91.7
Msa1422260 MtrunA17_Chr6g0486701 65.517 58 20 0 175 232 44 101 1.90e-20 88.6
Msa1422260 MtrunA17_Chr3g0140161 55.128 78 34 1 166 243 34 110 2.12e-20 87.8
Msa1422260 MtrunA17_Chr8g0387801 67.241 58 19 0 173 230 105 162 2.20e-20 90.5
Msa1422260 MtrunA17_Chr7g0257911 57.333 75 32 0 174 248 30 104 2.33e-20 90.1
Msa1422260 MtrunA17_Chr4g0026931 66.154 65 21 1 172 235 128 192 2.62e-20 89.7
Msa1422260 MtrunA17_Chr1g0201671 60.000 135 43 3 109 234 66 198 2.74e-20 90.9
Msa1422260 MtrunA17_Chr8g0390091 67.241 58 19 0 175 232 37 94 3.01e-20 88.6
Msa1422260 MtrunA17_Chr7g0261151 71.667 60 16 1 174 232 19 78 3.14e-20 85.9
Msa1422260 MtrunA17_Chr3g0115631 66.102 59 20 0 173 231 148 206 3.40e-20 90.5
Msa1422260 MtrunA17_Chr1g0196781 60.606 66 26 0 166 231 143 208 5.05e-20 89.4
Msa1422260 MtrunA17_Chr2g0323171 62.903 62 22 1 175 236 65 125 5.68e-20 86.7
Msa1422260 MtrunA17_Chr5g0412641 58.442 77 29 1 174 250 45 118 6.33e-20 89.7
Msa1422260 MtrunA17_Chr2g0331231 62.069 58 22 0 175 232 41 98 6.50e-20 87.0
Msa1422260 MtrunA17_Chr8g0340311 45.833 96 50 2 175 270 47 140 9.68e-20 86.3
Msa1422260 MtrunA17_Chr7g0253424 59.091 66 27 0 174 239 38 103 1.08e-19 87.8
Msa1422260 MtrunA17_Chr8g0382491 64.407 59 21 0 173 231 111 169 1.28e-19 87.8
Msa1422260 MtrunA17_Chr7g0261181 61.628 86 26 3 168 246 2 87 1.34e-19 84.0
Msa1422260 MtrunA17_Chr4g0023411 46.809 94 49 1 175 268 65 157 1.58e-19 85.5
Msa1422260 MtrunA17_Chr3g0134161 62.069 58 22 0 175 232 45 102 1.62e-19 84.7
Msa1422260 MtrunA17_Chr1g0186671 64.062 64 22 1 174 236 18 81 1.65e-19 84.0
Msa1422260 MtrunA17_Chr5g0401871 57.143 63 27 0 170 232 20 82 1.72e-19 85.1
Msa1422260 MtrunA17_Chr4g0055951 63.793 58 21 0 175 232 74 131 1.87e-19 86.7
Msa1422260 MtrunA17_Chr5g0432821 63.158 57 21 0 175 231 124 180 1.98e-19 87.4
Msa1422260 MtrunA17_Chr2g0324131 63.333 60 22 0 173 232 216 275 2.52e-19 88.6
Msa1422260 MtrunA17_Chr5g0437371 64.407 59 21 0 172 230 63 121 3.14e-19 87.4
Msa1422260 MtrunA17_Chr1g0153151 59.677 62 25 0 171 232 40 101 4.35e-19 84.0
Msa1422260 MtrunA17_Chr4g0017851 52.857 70 31 1 167 236 112 179 6.61e-19 86.3
Msa1422260 MtrunA17_Chr6g0461271 53.425 73 34 0 167 239 25 97 6.77e-19 86.3
Msa1422260 MtrunA17_Chr5g0399441 62.069 58 22 0 175 232 28 85 1.13e-18 82.8
Msa1422260 MtrunA17_Chr5g0437671 61.290 62 24 0 171 232 81 142 1.17e-18 86.7
Msa1422260 MtrunA17_Chr1g0183981 63.333 60 21 1 172 230 72 131 1.29e-18 83.6
Msa1422260 MtrunA17_Chr7g0217991 57.143 63 27 0 168 230 35 97 1.53e-18 86.7
Msa1422260 MtrunA17_Chr8g0346741 50.667 75 35 1 175 247 39 113 1.65e-18 82.4
Msa1422260 MtrunA17_Chr1g0184011 67.273 55 17 1 177 230 86 140 2.39e-18 83.2
Msa1422260 MtrunA17_Chr4g0066931 59.649 57 23 0 174 230 52 108 2.48e-18 85.1
Msa1422260 MtrunA17_Chr6g0473741 56.164 73 31 1 175 247 66 137 2.55e-18 83.2
Msa1422260 MtrunA17_Chr6g0453661 58.333 60 25 0 171 230 34 93 3.56e-18 85.1
Msa1422260 MtrunA17_Chr1g0184031 61.290 62 23 1 170 230 79 140 4.60e-18 82.0
Msa1422260 MtrunA17_Chr2g0286161 49.351 77 33 1 160 230 29 105 4.73e-18 83.6
Msa1422260 MtrunA17_Chr1g0184071 60.938 64 24 1 168 230 62 125 5.06e-18 80.9
Msa1422260 MtrunA17_Chr1g0170471 60.656 61 23 1 182 241 90 150 7.15e-18 80.5
Msa1422260 MtrunA17_Chr6g0464581 90.566 53 5 0 182 234 187 239 7.76e-18 84.3
Msa1422260 MtrunA17_Chr1g0186681 56.338 71 29 1 168 236 12 82 7.87e-18 79.0
Msa1422260 MtrunA17_Chr7g0252381 53.425 73 30 1 174 246 41 109 8.66e-18 82.4
Msa1422260 MtrunA17_Chr1g0184061 61.667 60 22 1 172 230 74 133 9.95e-18 81.3
Msa1422260 MtrunA17_Chr8g0378811 61.017 59 23 0 172 230 52 110 1.12e-17 82.0
Msa1422260 MtrunA17_Chr6g0473981 39.062 128 59 2 120 247 17 125 1.62e-17 81.3
Msa1422260 MtrunA17_Chr1g0183961 72.881 59 15 1 174 231 26 84 1.93e-17 78.6
Msa1422260 MtrunA17_Chr7g0265851 54.795 73 32 1 175 247 24 95 2.16e-17 79.7
Msa1422260 MtrunA17_Chr6g0473881 51.190 84 34 2 167 244 96 178 2.49e-17 81.6
Msa1422260 MtrunA17_Chr8g0345531 66.667 48 16 0 174 221 115 162 2.68e-17 82.4
Msa1422260 MtrunA17_Chr4g0062551 58.333 60 25 0 172 231 50 109 2.69e-17 77.8
Msa1422260 MtrunA17_Chr1g0189941 58.929 56 23 0 175 230 24 79 3.26e-17 78.2
Msa1422260 MtrunA17_Chr8g0350701 50.704 71 35 0 173 243 25 95 3.30e-17 81.3
Msa1422260 MtrunA17_Chr4g0062161 58.333 60 25 0 172 231 50 109 4.58e-17 79.0
Msa1422260 MtrunA17_Chr6g0473781 53.425 73 33 1 175 247 57 128 5.30e-17 79.3
Msa1422260 MtrunA17_Chr6g0473861 54.795 73 32 1 175 247 63 134 5.33e-17 80.5
Msa1422260 MtrunA17_Chr4g0042761 53.030 66 31 0 165 230 38 103 6.04e-17 80.9
Msa1422260 MtrunA17_Chr6g0474001 38.281 128 60 2 120 247 17 125 6.84e-17 79.7
Msa1422260 MtrunA17_Chr6g0473941 53.425 73 33 1 175 247 33 104 9.49e-17 78.2
Msa1422260 MtrunA17_Chr5g0396191 67.241 58 19 0 175 232 11 68 9.52e-17 77.8
Msa1422260 MtrunA17_Chr6g0473961 53.425 73 33 1 175 247 54 125 9.63e-17 78.2
Msa1422260 MtrunA17_Chr1g0203861 52.055 73 34 1 175 247 44 115 1.17e-16 77.8
Msa1422260 MtrunA17_Chr6g0473971 52.055 73 34 1 175 247 54 125 1.34e-16 78.6
Msa1422260 MtrunA17_Chr1g0150671 54.237 59 27 0 173 231 44 102 1.43e-16 79.0
Msa1422260 MtrunA17_Chr1g0150691 54.237 59 27 0 173 231 20 78 1.74e-16 77.8
Msa1422260 MtrunA17_Chr1g0183931 55.294 85 37 1 165 248 91 175 1.85e-16 78.2
Msa1422260 MtrunA17_Chr2g0301191 52.239 67 26 1 175 241 19 79 2.52e-16 77.0
Msa1422260 MtrunA17_Chr1g0150661 52.542 59 28 0 173 231 33 91 2.77e-16 77.0
Msa1422260 MtrunA17_Chr1g0150631 54.237 59 27 0 173 231 36 94 2.77e-16 77.4
Msa1422260 MtrunA17_Chr8g0345551 66.667 48 16 0 175 222 117 164 2.97e-16 79.3
Msa1422260 MtrunA17_Chr3g0136551 46.154 65 35 0 168 232 58 122 8.42e-16 76.6
Msa1422260 MtrunA17_Chr1g0155751 62.121 66 22 1 175 240 39 101 9.75e-16 76.6
Msa1422260 MtrunA17_Chr2g0301171 50.746 67 27 1 175 241 19 79 1.00e-15 75.1
Msa1422260 MtrunA17_Chr1g0200931 56.140 57 24 1 175 230 23 79 1.42e-15 73.2
Msa1422260 MtrunA17_Chr6g0473931 50.685 73 35 1 175 247 33 104 1.47e-15 74.7
Msa1422260 MtrunA17_Chr1g0149331 66.667 60 20 0 172 231 4 63 1.59e-15 74.3
Msa1422260 MtrunA17_Chr1g0209891 54.098 61 24 1 174 230 53 113 2.23e-15 75.9
Msa1422260 MtrunA17_Chr7g0261201 67.692 65 20 1 172 235 95 159 3.20e-15 74.3
Msa1422260 MtrunA17_Chr7g0243431 58.730 63 19 1 175 230 78 140 4.99e-15 76.3
Msa1422260 MtrunA17_Chr3g0083501 60.784 51 20 0 182 232 2 52 5.30e-15 69.3
Msa1422260 MtrunA17_Chr6g0486711 67.241 58 19 0 175 232 49 106 6.23e-15 73.6
Msa1422260 MtrunA17_Chr6g0473771 50.000 74 36 1 175 248 43 115 6.85e-15 70.5
Msa1422260 MtrunA17_Chr2g0301181 44.304 79 38 1 163 241 7 79 8.56e-15 73.2
Msa1422260 MtrunA17_Chr7g0261171 55.952 84 36 1 172 254 82 165 8.78e-15 73.2
Msa1422260 MtrunA17_Chr3g0137831 67.797 59 19 0 173 231 6 64 9.88e-15 72.4
Msa1422260 MtrunA17_Chr5g0438841 55.172 58 26 0 174 231 15 72 1.01e-14 71.6
Msa1422260 MtrunA17_Chr5g0396171 50.000 58 29 0 177 234 26 83 1.35e-14 68.9
Msa1422260 MtrunA17_Chr1g0205961 58.333 48 20 0 174 221 114 161 1.61e-14 73.9
Msa1422260 MtrunA17_Chr3g0142081 65.517 58 20 0 175 232 39 96 1.70e-14 72.0
Msa1422260 MtrunA17_Chr4g0057241 50.588 85 32 3 175 259 15 89 2.17e-14 70.5
Msa1422260 MtrunA17_Chr5g0423811 73.171 41 11 0 174 214 87 127 3.01e-14 72.4
Msa1422260 MtrunA17_Chr1g0146191 66.667 57 19 0 175 231 47 103 3.07e-14 72.0
Msa1422260 MtrunA17_Chr5g0396301 51.613 62 28 1 173 232 16 77 2.63e-13 67.4
Msa1422260 MtrunA17_Chr1g0186741 61.538 65 24 1 172 235 70 134 3.03e-13 68.2
Msa1422260 MtrunA17_Chr1g0167781 66.102 59 19 1 173 230 80 138 3.31e-13 68.2
Msa1422260 MtrunA17_Chr3g0136541 50.000 56 28 0 177 232 42 97 3.91e-13 68.6
Msa1422260 MtrunA17_Chr7g0225131 52.632 57 24 1 175 231 29 82 8.71e-13 63.9
Msa1422260 MtrunA17_Chr2g0321071 51.562 64 29 2 175 236 47 110 1.01e-12 67.0
Msa1422260 MtrunA17_Chr5g0396181 47.945 73 37 1 175 247 21 92 1.14e-12 66.2
Msa1422260 MtrunA17_Chr4g0002771 66.102 59 20 0 172 230 74 132 3.47e-12 65.1
Msa1422260 MtrunA17_Chr5g0396741 64.706 68 21 1 172 239 114 178 4.09e-12 66.6
Msa1422260 MtrunA17_Chr5g0424051 49.438 89 38 2 170 257 91 173 1.04e-11 65.1
Msa1422260 MtrunA17_Chr5g0422501 49.275 69 29 2 166 230 94 160 1.75e-11 65.1
Msa1422260 MtrunA17_Chr1g0198661 57.143 56 22 1 174 229 63 116 2.08e-11 64.7
Msa1422260 MtrunA17_Chr6g0473791 55.102 49 22 0 175 223 57 105 2.09e-11 61.6
Msa1422260 MtrunA17_Chr5g0398091 41.772 79 40 1 175 247 54 132 4.81e-11 62.0
Msa1422260 MtrunA17_Chr3g0108241 53.226 62 28 1 175 235 115 176 7.96e-11 62.0
Msa1422260 MtrunA17_Chr5g0398081 48.438 64 27 1 175 232 49 112 8.16e-11 61.6
Msa1422260 MtrunA17_Chr5g0398061 41.772 79 40 1 175 247 49 127 9.43e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422260 AT5G61890.1 84.615 65 10 0 172 236 87 151 2.30e-33 124
Msa1422260 AT5G13330.1 69.767 86 19 2 172 257 36 114 1.03e-32 122
Msa1422260 AT2G33710.1 72.727 77 17 1 172 244 67 143 5.52e-32 120
Msa1422260 AT2G33710.2 72.727 77 17 1 172 244 67 143 8.25e-32 120
Msa1422260 AT5G64750.1 59.804 102 31 1 182 273 192 293 9.18e-31 121
Msa1422260 AT2G47520.1 73.134 67 16 1 167 231 40 106 8.33e-29 110
Msa1422260 AT5G50080.2 44.162 197 60 5 40 236 1 147 1.12e-27 108
Msa1422260 AT5G50080.1 61.404 114 33 2 123 236 36 138 1.75e-27 108
Msa1422260 AT1G43160.1 89.231 65 7 0 170 234 56 120 6.21e-27 105
Msa1422260 AT5G07310.1 84.615 65 10 0 172 236 89 153 1.98e-26 106
Msa1422260 AT1G72360.1 62.162 74 28 0 174 247 24 97 3.18e-26 104
Msa1422260 AT1G72360.3 58.537 82 32 1 168 247 65 146 4.00e-26 105
Msa1422260 AT1G72360.2 58.537 82 32 1 168 247 67 148 4.00e-26 105
Msa1422260 AT4G11140.1 62.667 75 21 1 173 247 85 152 1.46e-25 104
Msa1422260 AT1G28370.2 71.875 64 17 1 168 231 52 114 1.99e-25 102
Msa1422260 AT1G28370.1 71.875 64 17 1 168 231 14 76 2.51e-25 100
Msa1422260 AT3G16770.1 74.603 63 14 1 172 232 74 136 3.84e-25 102
Msa1422260 AT5G47220.1 65.789 76 25 1 173 247 115 190 4.83e-25 102
Msa1422260 AT1G03800.1 72.414 58 16 0 174 231 52 109 1.51e-24 100
Msa1422260 AT3G15210.1 71.429 63 18 0 174 236 24 86 1.65e-24 100
Msa1422260 AT5G47230.1 70.423 71 20 1 170 239 151 221 1.67e-24 102
Msa1422260 AT4G17500.1 70.000 70 20 1 173 241 146 215 2.74e-24 100
Msa1422260 AT5G44210.1 51.515 99 42 1 175 273 33 125 9.34e-24 97.8
Msa1422260 AT4G17490.1 66.667 75 24 1 166 239 128 202 9.44e-24 99.8
Msa1422260 AT5G51190.1 66.197 71 22 2 162 231 60 129 1.30e-23 97.8
Msa1422260 AT4G27950.1 51.923 104 38 3 169 269 112 206 2.50e-23 99.4
Msa1422260 AT2G22200.1 58.228 79 32 1 170 247 66 144 3.71e-23 97.4
Msa1422260 AT2G44840.1 74.576 59 14 1 174 231 91 149 7.55e-23 95.9
Msa1422260 AT3G20310.1 50.505 99 44 2 174 271 26 120 1.04e-22 95.9
Msa1422260 AT1G15360.1 67.213 61 20 0 173 233 5 65 1.42e-22 94.4
Msa1422260 AT1G15360.2 67.213 61 20 0 173 233 5 65 1.42e-22 94.4
Msa1422260 AT1G50640.1 72.414 58 16 0 174 231 27 84 1.56e-22 95.1
Msa1422260 AT5G61600.1 66.667 63 20 1 173 234 86 148 3.10e-22 94.7
Msa1422260 AT5G53290.1 61.972 71 27 0 160 230 110 180 3.40e-22 96.7
Msa1422260 AT1G28360.1 67.742 62 20 0 175 236 12 73 4.00e-22 92.8
Msa1422260 AT4G23750.2 65.000 60 21 0 171 230 118 177 8.62e-22 95.5
Msa1422260 AT4G23750.1 65.000 60 21 0 171 230 118 177 8.62e-22 95.5
Msa1422260 AT4G28140.1 63.077 65 24 0 171 235 139 203 1.87e-21 93.6
Msa1422260 AT5G43410.1 67.188 64 20 1 174 236 14 77 1.89e-21 89.4
Msa1422260 AT4G13620.1 61.111 72 28 0 161 232 218 289 2.16e-21 94.7
Msa1422260 AT2G46310.1 61.111 72 22 1 174 245 98 163 2.52e-21 93.2
Msa1422260 AT5G65130.2 64.516 62 22 0 173 234 111 172 2.55e-21 92.8
Msa1422260 AT1G71450.1 65.517 58 20 0 175 232 24 81 2.66e-21 90.5
Msa1422260 AT5G65130.1 64.516 62 22 0 173 234 109 170 2.67e-21 92.8
Msa1422260 AT3G23230.1 71.186 59 16 1 174 231 19 77 2.75e-21 89.0
Msa1422260 AT4G39780.1 64.516 62 22 0 171 232 89 150 3.47e-21 92.4
Msa1422260 AT3G57600.1 59.459 74 28 1 174 247 27 98 4.05e-21 92.4
Msa1422260 AT3G60490.1 57.534 73 31 0 160 232 56 128 4.85e-21 91.7
Msa1422260 AT5G07580.1 61.644 73 26 2 160 231 96 167 5.63e-21 90.1
Msa1422260 AT5G25390.2 64.407 59 21 0 173 231 5 63 5.74e-21 89.7
Msa1422260 AT4G06746.1 58.730 63 26 0 172 234 33 95 5.79e-21 88.6
Msa1422260 AT1G22190.1 65.000 60 21 0 173 232 81 140 7.90e-21 91.3
Msa1422260 AT5G25190.1 61.290 62 24 0 172 233 5 66 1.20e-20 88.6
Msa1422260 AT1G12980.1 39.583 144 68 5 162 305 44 168 1.26e-20 91.7
Msa1422260 AT1G36060.1 66.102 59 20 0 173 231 141 199 1.58e-20 91.3
Msa1422260 AT2G35700.1 59.420 69 27 1 175 243 45 112 1.85e-20 88.6
Msa1422260 AT2G20880.1 64.516 62 22 0 171 232 183 244 2.29e-20 91.3
Msa1422260 AT3G61630.1 56.410 78 29 1 158 230 83 160 2.57e-20 90.9
Msa1422260 AT1G78080.1 66.102 59 20 0 173 231 150 208 3.60e-20 90.5
Msa1422260 AT1G75490.1 55.844 77 27 2 175 246 42 116 6.85e-20 87.4
Msa1422260 AT3G16280.2 59.155 71 28 1 175 245 79 148 7.27e-20 88.2
Msa1422260 AT3G16280.1 59.155 71 28 1 175 245 61 130 7.93e-20 87.8
Msa1422260 AT4G32800.1 57.576 66 28 0 167 232 11 76 8.05e-20 87.4
Msa1422260 AT2G25820.1 56.164 73 31 1 175 247 26 97 8.05e-20 87.4
Msa1422260 AT4G34410.1 82.456 57 10 0 175 231 136 192 8.20e-20 88.6
Msa1422260 AT3G50260.1 36.029 136 81 2 172 303 18 151 8.78e-20 85.5
Msa1422260 AT1G01250.1 54.930 71 31 1 175 245 45 114 1.21e-19 86.3
Msa1422260 AT4G36900.1 62.069 58 22 0 175 232 30 87 1.23e-19 86.3
Msa1422260 AT4G16750.1 50.000 84 41 1 161 244 26 108 1.87e-19 85.5
Msa1422260 AT2G23340.1 62.069 58 22 0 175 232 28 85 2.09e-19 85.1
Msa1422260 AT4G18450.1 70.000 60 16 2 173 230 108 167 2.96e-19 87.4
Msa1422260 AT2G40340.2 58.333 72 29 1 175 246 14 84 3.16e-19 87.0
Msa1422260 AT2G40340.5 58.333 72 29 1 175 246 14 84 3.16e-19 87.0
Msa1422260 AT2G40340.4 58.333 72 29 1 175 246 14 84 3.16e-19 87.0
Msa1422260 AT5G67190.1 61.667 60 23 0 173 232 19 78 3.26e-19 84.7
Msa1422260 AT5G11590.1 65.517 58 20 0 175 232 51 108 3.77e-19 85.9
Msa1422260 AT3G11020.1 65.000 60 21 0 175 234 78 137 4.03e-19 87.4
Msa1422260 AT2G44940.1 50.562 89 35 2 169 257 94 173 6.25e-19 86.3
Msa1422260 AT3G23240.1 62.903 62 22 1 170 230 77 138 8.11e-19 84.7
Msa1422260 AT5G25390.1 62.712 59 19 1 173 231 5 60 9.01e-19 83.6
Msa1422260 AT5G19790.1 64.407 59 21 0 172 230 19 77 9.32e-19 85.1
Msa1422260 AT1G46768.1 46.591 88 44 1 148 232 1 88 9.46e-19 82.8
Msa1422260 AT1G46768.2 46.591 88 44 1 148 232 1 88 9.46e-19 82.8
Msa1422260 AT5G05410.2 47.525 101 46 4 175 273 79 174 9.57e-19 85.9
Msa1422260 AT1G24590.1 66.667 57 19 0 174 230 57 113 9.89e-19 85.9
Msa1422260 AT1G19210.1 58.333 60 25 0 174 233 11 70 9.93e-19 83.6
Msa1422260 AT1G46768.3 46.591 88 44 1 148 232 1 88 1.05e-18 82.0
Msa1422260 AT5G05410.1 47.525 101 46 4 175 273 79 174 1.22e-18 86.3
Msa1422260 AT2G40340.6 58.333 72 29 1 175 246 79 149 1.26e-18 86.3
Msa1422260 AT2G40340.1 58.333 72 29 1 175 246 72 142 1.32e-18 86.3
Msa1422260 AT2G40340.3 58.333 72 29 1 175 246 72 142 1.45e-18 85.5
Msa1422260 AT1G12890.1 52.439 82 33 2 161 240 11 88 2.44e-18 83.2
Msa1422260 AT2G31230.1 59.701 67 26 1 170 235 81 147 2.66e-18 83.6
Msa1422260 AT5G13910.1 47.500 80 38 1 167 246 12 87 3.67e-18 82.4
Msa1422260 AT1G74930.1 47.436 78 35 1 162 233 2 79 4.08e-18 82.0
Msa1422260 AT4G25470.1 52.055 73 35 0 175 247 51 123 5.23e-18 82.4
Msa1422260 AT1G21910.1 59.649 57 23 0 175 231 50 106 5.27e-18 82.4
Msa1422260 AT5G25810.1 62.069 58 22 0 175 232 36 93 5.66e-18 82.0
Msa1422260 AT4G25490.1 60.606 66 25 1 175 239 48 113 8.18e-18 81.6
Msa1422260 AT5G18450.1 62.500 56 21 0 175 230 34 89 1.05e-17 83.2
Msa1422260 AT4G25480.1 54.286 70 32 0 175 244 51 120 1.14e-17 81.3
Msa1422260 AT3G14230.2 38.824 170 87 3 102 264 59 218 1.33e-17 83.6
Msa1422260 AT5G18560.1 61.404 57 22 0 174 230 54 110 1.46e-17 83.2
Msa1422260 AT1G22985.1 62.903 62 20 1 172 230 72 133 1.51e-17 79.3
Msa1422260 AT5G21960.1 56.250 64 28 0 170 233 2 65 1.63e-17 80.9
Msa1422260 AT1G53910.3 77.049 61 14 0 172 232 120 180 1.93e-17 83.2
Msa1422260 AT1G53910.1 77.049 61 14 0 172 232 122 182 1.97e-17 83.2
Msa1422260 AT1G53910.2 77.049 61 14 0 172 232 122 182 1.97e-17 83.2
Msa1422260 AT3G14230.3 55.102 98 39 1 172 264 120 217 2.21e-17 83.2
Msa1422260 AT3G14230.1 55.102 98 39 1 172 264 125 222 2.47e-17 82.8
Msa1422260 AT4G31060.1 52.459 61 29 0 173 233 25 85 7.26e-17 78.2
Msa1422260 AT5G51990.1 59.091 66 26 1 175 239 54 119 1.48e-16 78.2
Msa1422260 AT1G53170.1 73.684 57 15 0 174 230 30 86 1.50e-16 77.4
Msa1422260 AT1G28160.1 63.158 57 21 0 174 230 38 94 1.59e-16 78.6
Msa1422260 AT1G68550.1 66.000 50 17 0 172 221 110 159 1.98e-16 79.7
Msa1422260 AT1G68550.2 66.000 50 17 0 172 221 110 159 1.98e-16 79.7
Msa1422260 AT2G36450.1 59.677 62 24 1 175 235 15 76 2.00e-16 77.0
Msa1422260 AT5G67000.1 53.968 63 29 0 167 229 113 175 2.86e-16 76.6
Msa1422260 AT5G11190.1 71.186 59 17 0 173 231 5 63 3.67e-16 76.3
Msa1422260 AT2G40350.2 57.895 57 24 0 175 231 74 130 3.84e-16 75.9
Msa1422260 AT2G40350.1 57.895 57 24 0 175 231 67 123 4.50e-16 75.5
Msa1422260 AT3G23220.1 63.768 69 24 1 174 241 13 81 8.02e-16 73.9
Msa1422260 AT1G63030.2 39.640 111 48 2 134 244 7 98 8.42e-16 75.1
Msa1422260 AT1G63030.1 39.640 111 48 2 134 244 7 98 8.42e-16 75.1
Msa1422260 AT1G71130.1 57.812 64 22 1 172 230 76 139 1.49e-15 73.9
Msa1422260 AT5G61590.1 68.254 63 19 1 170 231 102 164 3.16e-15 73.9
Msa1422260 AT1G22810.1 46.250 80 38 2 169 246 8 84 9.82e-15 71.2
Msa1422260 AT1G04370.1 67.188 64 20 1 174 236 19 82 1.01e-14 70.9
Msa1422260 AT1G06160.1 65.625 64 21 1 173 235 80 143 4.77e-14 71.6
Msa1422260 AT1G33760.1 63.333 60 22 0 175 234 20 79 5.03e-14 70.1
Msa1422260 AT2G38340.1 39.815 108 53 3 174 269 69 176 6.93e-14 71.2
Msa1422260 AT2G40220.1 65.000 60 21 0 171 230 51 110 2.05e-13 70.9
Msa1422260 AT1G12610.1 53.571 56 26 0 175 230 30 85 3.05e-13 68.6
Msa1422260 AT1G49120.1 38.043 92 50 1 175 259 87 178 5.95e-13 69.3
Msa1422260 AT1G64380.1 60.274 73 26 1 167 239 128 197 8.97e-13 68.9
Msa1422260 AT3G25890.1 64.444 45 16 0 177 221 133 177 1.10e-12 68.6
Msa1422260 AT3G25890.2 64.444 45 16 0 177 221 133 177 1.10e-12 68.6
Msa1422260 AT1G77640.1 58.209 67 27 1 173 239 41 106 2.40e-12 66.6
Msa1422260 AT1G71520.1 45.455 66 32 1 174 235 13 78 5.37e-12 63.5
Msa1422260 AT1G68840.2 56.140 57 23 1 174 230 64 118 9.93e-12 65.9
Msa1422260 AT1G68840.1 56.140 57 23 1 174 230 64 118 9.93e-12 65.9
Msa1422260 AT1G80580.1 53.846 78 27 1 162 230 94 171 6.14e-11 62.8

Find 67 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGACTCATATCGTTTC+TGG 0.134577 tig0025353:+26173 Msa1422260:CDS
GTCAGCTGAAATGATCTTTC+CGG 0.239475 tig0025353:+26112 Msa1422260:CDS
TGTGATTATGGCTTCTTCTA+TGG 0.247539 tig0025353:+27476 Msa1422260:CDS
GACAAAGACCATGGGGAAAA+TGG 0.294498 tig0025353:+27106 Msa1422260:CDS
TTATGATGATAATGTGATTA+TGG 0.294940 tig0025353:+27464 Msa1422260:CDS
TGCATTTGTTTCTTCTATGC+AGG 0.323066 tig0025353:+27557 Msa1422260:CDS
AACAAGAATAACAAGAGAAA+TGG 0.338558 tig0025353:+27005 Msa1422260:CDS
TGATCTTTCCGGGTTTGAAT+AGG 0.341446 tig0025353:+26123 Msa1422260:CDS
GACAAAGATTGTGTTGTAGA+AGG 0.344837 tig0025353:-26296 None:intergenic
CATACTCTTGCTGCTTTGAA+TGG 0.348828 tig0025353:-27147 None:intergenic
TCAGCTGAAATGATCTTTCC+GGG 0.353680 tig0025353:+26113 Msa1422260:CDS
CATTCAAAGCAGCAAGAGTA+TGG 0.359272 tig0025353:+27148 Msa1422260:CDS
GATCTTTCCGGGTTTGAATA+GGG 0.363685 tig0025353:+26124 Msa1422260:CDS
AACTATATCAGCGTCACTTT+GGG 0.369074 tig0025353:-26207 None:intergenic
GTAGAAAAGTACGAGGAAAC+TGG 0.377693 tig0025353:-27588 None:intergenic
AGGGAAGATGATATATTTGT+TGG 0.400680 tig0025353:+26371 Msa1422260:CDS
TTACTTGTTGTTGGCAAAGC+AGG 0.402927 tig0025353:-26422 None:intergenic
ATTTGGTGCTTACTTGTTGT+TGG 0.413356 tig0025353:-26431 None:intergenic
GACATATTGTTGGTGATGTT+TGG 0.418592 tig0025353:-26269 None:intergenic
GAACTATATCAGCGTCACTT+TGG 0.425440 tig0025353:-26208 None:intergenic
CAGAAAGTTCAAGCATGAAT+AGG 0.431072 tig0025353:+26977 Msa1422260:CDS
GTCGAATGCTGAGAAGAGTT+AGG 0.441356 tig0025353:-27390 None:intergenic
GTTCTTCTCTCAAGAGAACT+AGG 0.443989 tig0025353:+26351 Msa1422260:CDS
TTTCGGGTATTCCTTCTGTA+AGG 0.446007 tig0025353:+27436 Msa1422260:CDS
AAAGGTCTAGTATGAACAAC+AGG 0.456920 tig0025353:-27366 None:intergenic
ACAAGAATAACAAGAGAAAT+GGG 0.461167 tig0025353:+27006 Msa1422260:CDS
ACAAAGACCATGGGGAAAAT+GGG 0.467232 tig0025353:+27107 Msa1422260:CDS
TTTCTACTCAGTTGCCACCT+TGG 0.468709 tig0025353:+27604 Msa1422260:CDS
CATCATAATAGTGCAATTCA+AGG 0.473295 tig0025353:+26230 Msa1422260:CDS
GCATTTGTTTCTTCTATGCA+GGG 0.489243 tig0025353:+27558 Msa1422260:CDS
TGCTGAGAAGAGTTAGGAAA+AGG 0.497086 tig0025353:-27384 None:intergenic
GTTGCCACCTTGGTCAACTT+CGG 0.500889 tig0025353:+27614 Msa1422260:CDS
TACTTGTTGTTGGCAAAGCA+GGG 0.501488 tig0025353:-26421 None:intergenic
GTAGTAGTAGTAGCTGGTGG+AGG 0.503347 tig0025353:-27285 None:intergenic
ATGGAACGTTTCGAATTCAC+CGG 0.511700 tig0025353:+27311 Msa1422260:CDS
AAAGCAGCAAGAGTATGGTT+AGG 0.512639 tig0025353:+27153 Msa1422260:CDS
AGAAGGAGAAGACATATTGT+TGG 0.517884 tig0025353:-26279 None:intergenic
AGCTGCTTCAGCAGTTTCAA+AGG 0.523875 tig0025353:-27178 None:intergenic
ACAGAGAATGTAGTAAGAGA+AGG 0.524432 tig0025353:+27054 Msa1422260:CDS
GCATAATTAGATGAAGAAGA+AGG 0.527566 tig0025353:-26323 None:intergenic
TAATAGTGCAATTCAAGGAA+TGG 0.533500 tig0025353:+26235 Msa1422260:CDS
CATTGAGTAGTAGTAGTAGC+TGG 0.538997 tig0025353:-27291 None:intergenic
CAGCTACTACTACTACTCAA+TGG 0.541524 tig0025353:+27292 Msa1422260:CDS
ATATCAGCGTCACTTTGGGT+TGG 0.542704 tig0025353:-26203 None:intergenic
GTTGGCGATTTCAAATTCCT+CGG 0.544131 tig0025353:+26389 Msa1422260:CDS
TAGTAGTAGTAGCTGGTGGA+GGG 0.544536 tig0025353:-27284 None:intergenic
TTGAAAATTGATCATCTAGA+CGG 0.545243 tig0025353:-27651 None:intergenic
GATGATGACAAAGAAGAAGC+TGG 0.563016 tig0025353:-27528 None:intergenic
TTACATGTGTATGTTAAAGG+TGG 0.575019 tig0025353:+26034 None:intergenic
ATCATTTCAGCTGACAATGT+AGG 0.579346 tig0025353:-26104 None:intergenic
TTCTTCTCTCAAGAGAACTA+GGG 0.579919 tig0025353:+26352 Msa1422260:CDS
TCATAAACATTCCTTACAGA+AGG 0.587081 tig0025353:-27447 None:intergenic
AGGAGTGAGACAAAGACCAT+GGG 0.591805 tig0025353:+27098 Msa1422260:CDS
TGTTGTTGGCAAAGCAGGGG+AGG 0.597101 tig0025353:-26417 None:intergenic
ACTTGTTGTTGGCAAAGCAG+GGG 0.605264 tig0025353:-26420 None:intergenic
TCTCTATCCCTATTCAAACC+CGG 0.612602 tig0025353:-26131 None:intergenic
GGCGATTTCAAATTCCTCGG+TGG 0.618201 tig0025353:+26392 Msa1422260:CDS
GAGGAGTGAGACAAAGACCA+TGG 0.634731 tig0025353:+27097 Msa1422260:CDS
TGGAACGTTTCGAATTCACC+GGG 0.636608 tig0025353:+27312 Msa1422260:CDS
TGAGTAGTAGTAGTAGCTGG+TGG 0.652788 tig0025353:-27288 None:intergenic
GAAGCAAAGAGAAAATACAG+AGG 0.659331 tig0025353:+27078 Msa1422260:CDS
CTATGATCCGAAGTTGACCA+AGG 0.684304 tig0025353:-27621 None:intergenic
GTAATAGAAACAATTGAACC+CGG 0.689937 tig0025353:-27330 None:intergenic
TGATCCGAAGTTGACCAAGG+TGG 0.715416 tig0025353:-27618 None:intergenic
CAACTGAGTAGAAAAGTACG+AGG 0.723485 tig0025353:-27595 None:intergenic
GGAGTGAGACAAAGACCATG+GGG 0.727396 tig0025353:+27099 Msa1422260:CDS
AAGCAGGGGAGGAACCACCG+AGG 0.764284 tig0025353:-26406 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATTGAAGAAAA+AGG - tig0025353:26468-26487 None:intergenic 10.0%
!! TTAAAGAAAATACATAAAAT+TGG - tig0025353:26676-26695 None:intergenic 10.0%
!! AAAAAATAAATTGAAGAAAA+AGG - tig0025353:26468-26487 None:intergenic 10.0%
!! TTAAAGAAAATACATAAAAT+TGG - tig0025353:26676-26695 None:intergenic 10.0%
!! AAAAGGAGAAATATTTAATT+TGG - tig0025353:26451-26470 None:intergenic 15.0%
!!! TTTATTTTTTAACTGAACTT+TGG - tig0025353:26570-26589 None:intergenic 15.0%
!! TAATAATGTAAGTATAACTT+AGG + tig0025353:26764-26783 Msa1422260:intron 15.0%
!! AGTTAAATGTAATTATATGT+TGG - tig0025353:26840-26859 None:intergenic 15.0%
!!! ATATATGGTTTGTATATTTA+AGG + tig0025353:26897-26916 Msa1422260:intron 15.0%
!! AAAAGGAGAAATATTTAATT+TGG - tig0025353:26451-26470 None:intergenic 15.0%
!!! TTTATTTTTTAACTGAACTT+TGG - tig0025353:26570-26589 None:intergenic 15.0%
!! TAATAATGTAAGTATAACTT+AGG + tig0025353:26764-26783 Msa1422260:intron 15.0%
!! AGTTAAATGTAATTATATGT+TGG - tig0025353:26840-26859 None:intergenic 15.0%
!!! ATATATGGTTTGTATATTTA+AGG + tig0025353:26897-26916 Msa1422260:intron 15.0%
!! TAAATAAATTGAAGTCAGAT+CGG + tig0025353:26586-26605 Msa1422260:intron 20.0%
!! AAGAAAATACATAAAATTGG+TGG - tig0025353:26673-26692 None:intergenic 20.0%
!! TTGTCTTTACTTCATATATA+TGG + tig0025353:26882-26901 Msa1422260:intron 20.0%
!!! GTAATAAGCTTTGTATTTAA+TGG - tig0025353:26936-26955 None:intergenic 20.0%
!!! TTATGATGATAATGTGATTA+TGG + tig0025353:27464-27483 Msa1422260:CDS 20.0%
!! TAAATAAATTGAAGTCAGAT+CGG + tig0025353:26586-26605 Msa1422260:intron 20.0%
!! AAGAAAATACATAAAATTGG+TGG - tig0025353:26673-26692 None:intergenic 20.0%
!! TTGTCTTTACTTCATATATA+TGG + tig0025353:26882-26901 Msa1422260:intron 20.0%
!!! GTAATAAGCTTTGTATTTAA+TGG - tig0025353:26936-26955 None:intergenic 20.0%
!!! TTATGATGATAATGTGATTA+TGG + tig0025353:27464-27483 Msa1422260:CDS 20.0%
! AACAAGAATAACAAGAGAAA+TGG + tig0025353:27005-27024 Msa1422260:CDS 25.0%
! ACAAGAATAACAAGAGAAAT+GGG + tig0025353:27006-27025 Msa1422260:CDS 25.0%
!! TTATGATCGTTTTCAGTTTT+CGG + tig0025353:27419-27438 Msa1422260:CDS 25.0%
! AACAAGAATAACAAGAGAAA+TGG + tig0025353:27005-27024 Msa1422260:CDS 25.0%
! ACAAGAATAACAAGAGAAAT+GGG + tig0025353:27006-27025 Msa1422260:CDS 25.0%
!! TTATGATCGTTTTCAGTTTT+CGG + tig0025353:27419-27438 Msa1422260:CDS 25.0%
CATCATAATAGTGCAATTCA+AGG + tig0025353:26230-26249 Msa1422260:CDS 30.0%
TAATAGTGCAATTCAAGGAA+TGG + tig0025353:26235-26254 Msa1422260:CDS 30.0%
GCATAATTAGATGAAGAAGA+AGG - tig0025353:26326-26345 None:intergenic 30.0%
AGGGAAGATGATATATTTGT+TGG + tig0025353:26371-26390 Msa1422260:CDS 30.0%
!! ATTTTCAGGGAAATTGAGTT+TGG - tig0025353:27250-27269 None:intergenic 30.0%
! TACGAAGTGTAACATTTTCA+GGG - tig0025353:27263-27282 None:intergenic 30.0%
! TTACGAAGTGTAACATTTTC+AGG - tig0025353:27264-27283 None:intergenic 30.0%
GTAATAGAAACAATTGAACC+CGG - tig0025353:27333-27352 None:intergenic 30.0%
! TATGATCGTTTTCAGTTTTC+GGG + tig0025353:27420-27439 Msa1422260:CDS 30.0%
TCATAAACATTCCTTACAGA+AGG - tig0025353:27450-27469 None:intergenic 30.0%
CATCATAATAGTGCAATTCA+AGG + tig0025353:26230-26249 Msa1422260:CDS 30.0%
TAATAGTGCAATTCAAGGAA+TGG + tig0025353:26235-26254 Msa1422260:CDS 30.0%
GCATAATTAGATGAAGAAGA+AGG - tig0025353:26326-26345 None:intergenic 30.0%
AGGGAAGATGATATATTTGT+TGG + tig0025353:26371-26390 Msa1422260:CDS 30.0%
!! ATTTTCAGGGAAATTGAGTT+TGG - tig0025353:27250-27269 None:intergenic 30.0%
! TACGAAGTGTAACATTTTCA+GGG - tig0025353:27263-27282 None:intergenic 30.0%
! TTACGAAGTGTAACATTTTC+AGG - tig0025353:27264-27283 None:intergenic 30.0%
GTAATAGAAACAATTGAACC+CGG - tig0025353:27333-27352 None:intergenic 30.0%
! TATGATCGTTTTCAGTTTTC+GGG + tig0025353:27420-27439 Msa1422260:CDS 30.0%
TCATAAACATTCCTTACAGA+AGG - tig0025353:27450-27469 None:intergenic 30.0%
ATCATTTCAGCTGACAATGT+AGG - tig0025353:26107-26126 None:intergenic 35.0%
! AACTATATCAGCGTCACTTT+GGG - tig0025353:26210-26229 None:intergenic 35.0%
!! GACATATTGTTGGTGATGTT+TGG - tig0025353:26272-26291 None:intergenic 35.0%
AGAAGGAGAAGACATATTGT+TGG - tig0025353:26282-26301 None:intergenic 35.0%
GACAAAGATTGTGTTGTAGA+AGG - tig0025353:26299-26318 None:intergenic 35.0%
TTCTTCTCTCAAGAGAACTA+GGG + tig0025353:26352-26371 Msa1422260:CDS 35.0%
!! ATTTGGTGCTTACTTGTTGT+TGG - tig0025353:26434-26453 None:intergenic 35.0%
TAAATTGAAGTCAGATCGGA+TGG + tig0025353:26590-26609 Msa1422260:intron 35.0%
TCAAACCATGTATAACCTTG+AGG + tig0025353:26629-26648 Msa1422260:intron 35.0%
CAAACCATGTATAACCTTGA+GGG + tig0025353:26630-26649 Msa1422260:intron 35.0%
AAACCATGTATAACCTTGAG+GGG + tig0025353:26631-26650 Msa1422260:intron 35.0%
TTACATATATATGCCCCTCA+AGG - tig0025353:26647-26666 None:intergenic 35.0%
CAGAAAGTTCAAGCATGAAT+AGG + tig0025353:26977-26996 Msa1422260:CDS 35.0%
ACAGAGAATGTAGTAAGAGA+AGG + tig0025353:27054-27073 Msa1422260:CDS 35.0%
GAAGCAAAGAGAAAATACAG+AGG + tig0025353:27078-27097 Msa1422260:CDS 35.0%
AAAGGTCTAGTATGAACAAC+AGG - tig0025353:27369-27388 None:intergenic 35.0%
TGTGATTATGGCTTCTTCTA+TGG + tig0025353:27476-27495 Msa1422260:CDS 35.0%
! TGCATTTGTTTCTTCTATGC+AGG + tig0025353:27557-27576 Msa1422260:CDS 35.0%
! GCATTTGTTTCTTCTATGCA+GGG + tig0025353:27558-27577 Msa1422260:CDS 35.0%
ATCATTTCAGCTGACAATGT+AGG - tig0025353:26107-26126 None:intergenic 35.0%
! AACTATATCAGCGTCACTTT+GGG - tig0025353:26210-26229 None:intergenic 35.0%
!! GACATATTGTTGGTGATGTT+TGG - tig0025353:26272-26291 None:intergenic 35.0%
AGAAGGAGAAGACATATTGT+TGG - tig0025353:26282-26301 None:intergenic 35.0%
GACAAAGATTGTGTTGTAGA+AGG - tig0025353:26299-26318 None:intergenic 35.0%
TTCTTCTCTCAAGAGAACTA+GGG + tig0025353:26352-26371 Msa1422260:CDS 35.0%
!! ATTTGGTGCTTACTTGTTGT+TGG - tig0025353:26434-26453 None:intergenic 35.0%
TAAATTGAAGTCAGATCGGA+TGG + tig0025353:26590-26609 Msa1422260:intron 35.0%
TCAAACCATGTATAACCTTG+AGG + tig0025353:26629-26648 Msa1422260:intron 35.0%
CAAACCATGTATAACCTTGA+GGG + tig0025353:26630-26649 Msa1422260:intron 35.0%
AAACCATGTATAACCTTGAG+GGG + tig0025353:26631-26650 Msa1422260:intron 35.0%
TTACATATATATGCCCCTCA+AGG - tig0025353:26647-26666 None:intergenic 35.0%
CAGAAAGTTCAAGCATGAAT+AGG + tig0025353:26977-26996 Msa1422260:CDS 35.0%
ACAGAGAATGTAGTAAGAGA+AGG + tig0025353:27054-27073 Msa1422260:CDS 35.0%
GAAGCAAAGAGAAAATACAG+AGG + tig0025353:27078-27097 Msa1422260:CDS 35.0%
AAAGGTCTAGTATGAACAAC+AGG - tig0025353:27369-27388 None:intergenic 35.0%
TGTGATTATGGCTTCTTCTA+TGG + tig0025353:27476-27495 Msa1422260:CDS 35.0%
! TGCATTTGTTTCTTCTATGC+AGG + tig0025353:27557-27576 Msa1422260:CDS 35.0%
! GCATTTGTTTCTTCTATGCA+GGG + tig0025353:27558-27577 Msa1422260:CDS 35.0%
GTCAGCTGAAATGATCTTTC+CGG + tig0025353:26112-26131 Msa1422260:CDS 40.0%
TCAGCTGAAATGATCTTTCC+GGG + tig0025353:26113-26132 Msa1422260:CDS 40.0%
TGATCTTTCCGGGTTTGAAT+AGG + tig0025353:26123-26142 Msa1422260:CDS 40.0%
GATCTTTCCGGGTTTGAATA+GGG + tig0025353:26124-26143 Msa1422260:CDS 40.0%
TCTCTATCCCTATTCAAACC+CGG - tig0025353:26134-26153 None:intergenic 40.0%
GCTTTGACTCATATCGTTTC+TGG + tig0025353:26173-26192 Msa1422260:CDS 40.0%
GAACTATATCAGCGTCACTT+TGG - tig0025353:26211-26230 None:intergenic 40.0%
GTTCTTCTCTCAAGAGAACT+AGG + tig0025353:26351-26370 Msa1422260:CDS 40.0%
GTTGGCGATTTCAAATTCCT+CGG + tig0025353:26389-26408 Msa1422260:CDS 40.0%
!! TACTTGTTGTTGGCAAAGCA+GGG - tig0025353:26424-26443 None:intergenic 40.0%
!! TTACTTGTTGTTGGCAAAGC+AGG - tig0025353:26425-26444 None:intergenic 40.0%
TTCTGATTACCAAGTCGGTA+GGG - tig0025353:26504-26523 None:intergenic 40.0%
CGAACTTCTGATTACCAAGT+CGG - tig0025353:26509-26528 None:intergenic 40.0%
!! CGACTTGGTAATCAGAAGTT+CGG + tig0025353:26507-26526 Msa1422260:intron 40.0%
ACAAAGACCATGGGGAAAAT+GGG + tig0025353:27107-27126 Msa1422260:CDS 40.0%
!! CATACTCTTGCTGCTTTGAA+TGG - tig0025353:27150-27169 None:intergenic 40.0%
CATTCAAAGCAGCAAGAGTA+TGG + tig0025353:27148-27167 Msa1422260:CDS 40.0%
! AAAGCAGCAAGAGTATGGTT+AGG + tig0025353:27153-27172 Msa1422260:CDS 40.0%
CATTGAGTAGTAGTAGTAGC+TGG - tig0025353:27294-27313 None:intergenic 40.0%
CAGCTACTACTACTACTCAA+TGG + tig0025353:27292-27311 Msa1422260:CDS 40.0%
ATGGAACGTTTCGAATTCAC+CGG + tig0025353:27311-27330 Msa1422260:CDS 40.0%
TGCTGAGAAGAGTTAGGAAA+AGG - tig0025353:27387-27406 None:intergenic 40.0%
! TTTCGGGTATTCCTTCTGTA+AGG + tig0025353:27436-27455 Msa1422260:CDS 40.0%
GATGATGACAAAGAAGAAGC+TGG - tig0025353:27531-27550 None:intergenic 40.0%
! GTAGAAAAGTACGAGGAAAC+TGG - tig0025353:27591-27610 None:intergenic 40.0%
! CAACTGAGTAGAAAAGTACG+AGG - tig0025353:27598-27617 None:intergenic 40.0%
GTCAGCTGAAATGATCTTTC+CGG + tig0025353:26112-26131 Msa1422260:CDS 40.0%
TCAGCTGAAATGATCTTTCC+GGG + tig0025353:26113-26132 Msa1422260:CDS 40.0%
TGATCTTTCCGGGTTTGAAT+AGG + tig0025353:26123-26142 Msa1422260:CDS 40.0%
GATCTTTCCGGGTTTGAATA+GGG + tig0025353:26124-26143 Msa1422260:CDS 40.0%
TCTCTATCCCTATTCAAACC+CGG - tig0025353:26134-26153 None:intergenic 40.0%
GCTTTGACTCATATCGTTTC+TGG + tig0025353:26173-26192 Msa1422260:CDS 40.0%
GAACTATATCAGCGTCACTT+TGG - tig0025353:26211-26230 None:intergenic 40.0%
GTTCTTCTCTCAAGAGAACT+AGG + tig0025353:26351-26370 Msa1422260:CDS 40.0%
GTTGGCGATTTCAAATTCCT+CGG + tig0025353:26389-26408 Msa1422260:CDS 40.0%
!! TACTTGTTGTTGGCAAAGCA+GGG - tig0025353:26424-26443 None:intergenic 40.0%
!! TTACTTGTTGTTGGCAAAGC+AGG - tig0025353:26425-26444 None:intergenic 40.0%
TTCTGATTACCAAGTCGGTA+GGG - tig0025353:26504-26523 None:intergenic 40.0%
CGAACTTCTGATTACCAAGT+CGG - tig0025353:26509-26528 None:intergenic 40.0%
!! CGACTTGGTAATCAGAAGTT+CGG + tig0025353:26507-26526 Msa1422260:intron 40.0%
ACAAAGACCATGGGGAAAAT+GGG + tig0025353:27107-27126 Msa1422260:CDS 40.0%
!! CATACTCTTGCTGCTTTGAA+TGG - tig0025353:27150-27169 None:intergenic 40.0%
CATTCAAAGCAGCAAGAGTA+TGG + tig0025353:27148-27167 Msa1422260:CDS 40.0%
! AAAGCAGCAAGAGTATGGTT+AGG + tig0025353:27153-27172 Msa1422260:CDS 40.0%
CATTGAGTAGTAGTAGTAGC+TGG - tig0025353:27294-27313 None:intergenic 40.0%
CAGCTACTACTACTACTCAA+TGG + tig0025353:27292-27311 Msa1422260:CDS 40.0%
ATGGAACGTTTCGAATTCAC+CGG + tig0025353:27311-27330 Msa1422260:CDS 40.0%
TGCTGAGAAGAGTTAGGAAA+AGG - tig0025353:27387-27406 None:intergenic 40.0%
! TTTCGGGTATTCCTTCTGTA+AGG + tig0025353:27436-27455 Msa1422260:CDS 40.0%
GATGATGACAAAGAAGAAGC+TGG - tig0025353:27531-27550 None:intergenic 40.0%
! GTAGAAAAGTACGAGGAAAC+TGG - tig0025353:27591-27610 None:intergenic 40.0%
! CAACTGAGTAGAAAAGTACG+AGG - tig0025353:27598-27617 None:intergenic 40.0%
! ATATCAGCGTCACTTTGGGT+TGG - tig0025353:26206-26225 None:intergenic 45.0%
!! ACTTGTTGTTGGCAAAGCAG+GGG - tig0025353:26423-26442 None:intergenic 45.0%
ATTACCAAGTCGGTAGGGTA+AGG - tig0025353:26499-26518 None:intergenic 45.0%
CTTCTGATTACCAAGTCGGT+AGG - tig0025353:26505-26524 None:intergenic 45.0%
ATGCCCCTCAAGGTTATACA+TGG - tig0025353:26637-26656 None:intergenic 45.0%
AGGAGTGAGACAAAGACCAT+GGG + tig0025353:27098-27117 Msa1422260:CDS 45.0%
GACAAAGACCATGGGGAAAA+TGG + tig0025353:27106-27125 Msa1422260:CDS 45.0%
AGCTGCTTCAGCAGTTTCAA+AGG - tig0025353:27181-27200 None:intergenic 45.0%
! GAAGCTGCTCTTCGTTTTAG+AGG + tig0025353:27216-27235 Msa1422260:CDS 45.0%
TAGTAGTAGTAGCTGGTGGA+GGG - tig0025353:27287-27306 None:intergenic 45.0%
TGAGTAGTAGTAGTAGCTGG+TGG - tig0025353:27291-27310 None:intergenic 45.0%
TGGAACGTTTCGAATTCACC+GGG + tig0025353:27312-27331 Msa1422260:CDS 45.0%
GTCGAATGCTGAGAAGAGTT+AGG - tig0025353:27393-27412 None:intergenic 45.0%
TTTCTACTCAGTTGCCACCT+TGG + tig0025353:27604-27623 Msa1422260:CDS 45.0%
CTATGATCCGAAGTTGACCA+AGG - tig0025353:27624-27643 None:intergenic 45.0%
! ATATCAGCGTCACTTTGGGT+TGG - tig0025353:26206-26225 None:intergenic 45.0%
!! ACTTGTTGTTGGCAAAGCAG+GGG - tig0025353:26423-26442 None:intergenic 45.0%
ATTACCAAGTCGGTAGGGTA+AGG - tig0025353:26499-26518 None:intergenic 45.0%
CTTCTGATTACCAAGTCGGT+AGG - tig0025353:26505-26524 None:intergenic 45.0%
ATGCCCCTCAAGGTTATACA+TGG - tig0025353:26637-26656 None:intergenic 45.0%
AGGAGTGAGACAAAGACCAT+GGG + tig0025353:27098-27117 Msa1422260:CDS 45.0%
GACAAAGACCATGGGGAAAA+TGG + tig0025353:27106-27125 Msa1422260:CDS 45.0%
AGCTGCTTCAGCAGTTTCAA+AGG - tig0025353:27181-27200 None:intergenic 45.0%
! GAAGCTGCTCTTCGTTTTAG+AGG + tig0025353:27216-27235 Msa1422260:CDS 45.0%
TAGTAGTAGTAGCTGGTGGA+GGG - tig0025353:27287-27306 None:intergenic 45.0%
TGAGTAGTAGTAGTAGCTGG+TGG - tig0025353:27291-27310 None:intergenic 45.0%
TGGAACGTTTCGAATTCACC+GGG + tig0025353:27312-27331 Msa1422260:CDS 45.0%
GTCGAATGCTGAGAAGAGTT+AGG - tig0025353:27393-27412 None:intergenic 45.0%
TTTCTACTCAGTTGCCACCT+TGG + tig0025353:27604-27623 Msa1422260:CDS 45.0%
CTATGATCCGAAGTTGACCA+AGG - tig0025353:27624-27643 None:intergenic 45.0%
GGCGATTTCAAATTCCTCGG+TGG + tig0025353:26392-26411 Msa1422260:CDS 50.0%
!! TTAGCCTTACCCTACCGACT+TGG + tig0025353:26492-26511 Msa1422260:intron 50.0%
GAGGAGTGAGACAAAGACCA+TGG + tig0025353:27097-27116 Msa1422260:CDS 50.0%
GGAGTGAGACAAAGACCATG+GGG + tig0025353:27099-27118 Msa1422260:CDS 50.0%
GTAGTAGTAGTAGCTGGTGG+AGG - tig0025353:27288-27307 None:intergenic 50.0%
GTTGCCACCTTGGTCAACTT+CGG + tig0025353:27614-27633 Msa1422260:CDS 50.0%
TGATCCGAAGTTGACCAAGG+TGG - tig0025353:27621-27640 None:intergenic 50.0%
GGCGATTTCAAATTCCTCGG+TGG + tig0025353:26392-26411 Msa1422260:CDS 50.0%
!! TTAGCCTTACCCTACCGACT+TGG + tig0025353:26492-26511 Msa1422260:intron 50.0%
GAGGAGTGAGACAAAGACCA+TGG + tig0025353:27097-27116 Msa1422260:CDS 50.0%
GGAGTGAGACAAAGACCATG+GGG + tig0025353:27099-27118 Msa1422260:CDS 50.0%
GTAGTAGTAGTAGCTGGTGG+AGG - tig0025353:27288-27307 None:intergenic 50.0%
GTTGCCACCTTGGTCAACTT+CGG + tig0025353:27614-27633 Msa1422260:CDS 50.0%
TGATCCGAAGTTGACCAAGG+TGG - tig0025353:27621-27640 None:intergenic 50.0%
TGTTGTTGGCAAAGCAGGGG+AGG - tig0025353:26420-26439 None:intergenic 55.0%
! TCTGCTGCCCATTTTCCCCA+TGG - tig0025353:27117-27136 None:intergenic 55.0%
TGTTGTTGGCAAAGCAGGGG+AGG - tig0025353:26420-26439 None:intergenic 55.0%
! TCTGCTGCCCATTTTCCCCA+TGG - tig0025353:27117-27136 None:intergenic 55.0%
AAGCAGGGGAGGAACCACCG+AGG - tig0025353:26409-26428 None:intergenic 65.0%
AAGCAGGGGAGGAACCACCG+AGG - tig0025353:26409-26428 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0025353 gene 26038 27662 26038 ID=Msa1422260;Name=Msa1422260
tig0025353 mRNA 26038 27662 26038 ID=Msa1422260-mRNA-1;Parent=Msa1422260;Name=Msa1422260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|363
tig0025353 exon 26038 26440 26038 ID=Msa1422260-mRNA-1:exon:2467;Parent=Msa1422260-mRNA-1
tig0025353 exon 26974 27662 26974 ID=Msa1422260-mRNA-1:exon:2468;Parent=Msa1422260-mRNA-1
tig0025353 CDS 26038 26440 26038 ID=Msa1422260-mRNA-1:cds;Parent=Msa1422260-mRNA-1
tig0025353 CDS 26974 27662 26974 ID=Msa1422260-mRNA-1:cds;Parent=Msa1422260-mRNA-1
Gene Sequence

>Msa1422260

ATGTGTATGTTAAAGGTGGCGAATTCAAAAGACAAAGTTGTTATCAAAAGTGAATTCAATGATCATCCTACATTGTCAGCTGAAATGATCTTTCCGGGTTTGAATAGGGATAGAGAGATGTCTGCAATGATCTCAGCTTTGACTCATATCGTTTCTGGAGATGTTCCAACCCAAAGTGACGCTGATATAGTTCATCATAATAGTGCAATTCAAGGAATGGTTTCTTTTACACCAAACATCACCAACAATATGTCTTCTCCTTCTACAACACAATCTTTGTCTTCTCCTTCTTCTTCATCTAATTATGCTACTAGTTCTTCTCTCAAGAGAACTAGGGAAGATGATATATTTGTTGGCGATTTCAAATTCCTCGGTGGTTCCTCCCCTGCTTTGCCAACAACAATTGCAGAAAGTTCAAGCATGAATAGGACAGCAACAAGAATAACAAGAGAAATGGGAAATGCAGTGTATGAATATAGAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGCAAAGAGAAAATACAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACCTTTGAAACTGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCCAAACTCAATTTCCCTGAAAATGTTACACTTCGTAACCCTCCACCAGCTACTACTACTACTCAATGGAACGTTTCGAATTCACCGGGTTCAATTGTTTCTATTACAACTTCTACTGATCCTGTTGTTCATACTAGACCTTTTCCTAACTCTTCTCAGCATTCGACAAACTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTTCTGTAAGGAATGTTTATGATGATAATGTGATTATGGCTTCTTCTATGGCTTCTCATCTACAATCTTCGTCATCGTCGCCAGCTTCTTCTTTGTCATCATCTTCTTCTGCATTTGTTTCTTCTATGCAGGGCAATACTCCAGTTTCCTCGTACTTTTCTACTCAGTTGCCACCTTGGTCAACTTCGGATCATAGCTCTTCTCCGTCTAGATGA
Protein sequence

>Msa1422260

MCMLKVANSKDKVVIKSEFNDHPTLSAEMIFPGLNRDREMSAMISALTHIVSGDVPTQSDADIVHHNSAIQGMVSFTPNITNNMSSPSTTQSLSSPSSSSNYATSSSLKRTREDDIFVGDFKFLGGSSPALPTTIAESSSMNRTATRITREMGNAVYEYRRTENVVREGEAKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRNPPPATTTTQWNVSNSPGSIVSITTSTDPVVHTRPFPNSSQHSTNFYDRFQFSGIPSVRNVYDDNVIMASSMASHLQSSSSSPASSLSSSSSAFVSSMQGNTPVSSYFSTQLPPWSTSDHSSSPSR*