AlfalfaGEDB | Msa1374450

M. sativa cultivar zhongmu-4 / Msa1374450

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0033993 GO:0034284 GO:0042221 GO:0043207 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374450	XP_003602514.1	91.477	352	25	1	1	352	1	347	0.0	571

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374450	sp\|Q9FH54\|EF114_ARATH	84.615	65	10	0	172	236	87	151	2.54e-32	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374450	G7JAD3	91.477	352	25	1	1	352	1	347	0.0	571

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TFs/TRs:

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Gene ID	Type	Classification
Msa1374450	TF	AP2/ERF-ERF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0473540	Msa1374450	0.805904	1.065889e-49	-8.615850e-47
Msa0484700	Msa1374450	0.884617	1.645482e-71	-8.615850e-47
Msa0888980	Msa1374450	0.819271	1.267864e-52	-8.615850e-47
Msa1374450	Msa1422260	0.846568	2.001337e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374450	MtrunA17_Chr3g0129421	91.477	352	25	1	1	352	1	347	0.0	571
Msa1374450	MtrunA17_Chr8g0383591	45.788	273	125	8	29	293	5	262	4.13e-64	206
Msa1374450	MtrunA17_Chr7g0221471	75.000	72	18	0	167	238	43	114	1.95e-32	119
Msa1374450	MtrunA17_Chr7g0221501	73.239	71	19	0	165	235	41	111	1.27e-31	117
Msa1374450	MtrunA17_Chr8g0375031	73.016	63	17	0	168	230	118	180	5.62e-29	112
Msa1374450	MtrunA17_Chr4g0044871	60.194	103	35	2	135	231	50	152	6.27e-29	112
Msa1374450	MtrunA17_Chr4g0044881	82.759	58	10	0	174	231	113	170	3.59e-28	110
Msa1374450	MtrunA17_Chr2g0295421	68.919	74	21	1	169	240	88	161	1.31e-27	109
Msa1374450	MtrunA17_Chr4g0044901	82.456	57	10	0	175	231	96	152	1.78e-27	108
Msa1374450	MtrunA17_Chr4g0044911	82.456	57	10	0	175	231	96	152	1.85e-27	108

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374450	AT5G61890.1	84.615	65	10	0	172	236	87	151	2.58e-33	124
Msa1374450	AT5G13330.1	69.767	86	19	2	172	257	36	114	1.12e-32	122
Msa1374450	AT2G33710.1	72.727	77	17	1	172	244	67	143	6.19e-32	120
Msa1374450	AT2G33710.2	72.727	77	17	1	172	244	67	143	9.15e-32	120
Msa1374450	AT5G64750.1	59.804	102	31	1	182	273	192	293	1.16e-30	120
Msa1374450	AT2G47520.1	73.134	67	16	1	167	231	40	106	1.05e-28	110
Msa1374450	AT5G50080.2	88.060	67	8	0	170	236	81	147	2.83e-27	107
Msa1374450	AT5G50080.1	88.060	67	8	0	170	236	72	138	3.02e-27	107
Msa1374450	AT1G43160.1	89.231	65	7	0	170	234	56	120	7.03e-27	105
Msa1374450	AT5G07310.1	84.615	65	10	0	172	236	89	153	2.26e-26	106

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Find 67 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAGCAAGAGTATGGTT+AGG	0.512639	tig0019487:-127813	Msa1374450:CDS
AAAGGTCTAGTATGAACAAC+AGG	0.456920	tig0019487:+127600	None:intergenic
AACAAGAATAACAAGAGAAA+TGG	0.338558	tig0019487:-127961	Msa1374450:CDS
AACTATATCAGCGTCACTTT+GGG	0.369074	tig0019487:+128758	None:intergenic
AAGCAGGGGAGGAACCACCG+AGG	0.764284	tig0019487:+128559	None:intergenic
ACAAAGACCATGGGGAAAAT+GGG	0.467232	tig0019487:-127859	Msa1374450:CDS
ACAAGAATAACAAGAGAAAT+GGG	0.461167	tig0019487:-127960	Msa1374450:CDS
ACAGAGAATGTAGTAAGAGA+AGG	0.524432	tig0019487:-127912	Msa1374450:CDS
ACTTCTTGTTGGCAAAGCAG+GGG	0.605531	tig0019487:+128545	None:intergenic
AGAAGGAGAAGACATATTGT+TGG	0.517884	tig0019487:+128686	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCATAATAGTGCAATTCA+AGG	-	tig0019487:127518-127537	Msa1374450:CDS	30.0%
TAATAGTGCAATTCAAGGAA+TGG	-	tig0019487:127523-127542	Msa1374450:CDS	30.0%
GCATAATTAGATGAAGAAGA+AGG	+	tig0019487:127614-127633	None:intergenic	30.0%
GTAATAGAAACAATTGAACC+CGG	+	tig0019487:128620-128639	None:intergenic	30.0%
TCATAAACATTCCTTACAGA+AGG	+	tig0019487:128737-128756	None:intergenic	30.0%
CATCATAATAGTGCAATTCA+AGG	-	tig0019487:127518-127537	Msa1374450:CDS	30.0%
TAATAGTGCAATTCAAGGAA+TGG	-	tig0019487:127523-127542	Msa1374450:CDS	30.0%
GCATAATTAGATGAAGAAGA+AGG	+	tig0019487:127614-127633	None:intergenic	30.0%
GTAATAGAAACAATTGAACC+CGG	+	tig0019487:128620-128639	None:intergenic	30.0%
TCATAAACATTCCTTACAGA+AGG	+	tig0019487:128737-128756	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019487	gene	127326	128949	127326	ID=Msa1374450;Name=Msa1374450
tig0019487	mRNA	127326	128949	127326	ID=Msa1374450-mRNA-1;Parent=Msa1374450;Name=Msa1374450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|0\|0\|1\|1\|1\|2\|0\|363
tig0019487	exon	128547	128949	128547	ID=Msa1374450-mRNA-1:exon:3948;Parent=Msa1374450-mRNA-1
tig0019487	exon	127326	128014	127326	ID=Msa1374450-mRNA-1:exon:3947;Parent=Msa1374450-mRNA-1
tig0019487	CDS	128547	128949	128547	ID=Msa1374450-mRNA-1:cds;Parent=Msa1374450-mRNA-1
tig0019487	CDS	127326	128014	127326	ID=Msa1374450-mRNA-1:cds;Parent=Msa1374450-mRNA-1

Gene Sequence

>Msa1374450

ATGTGTATGTTAAAGGTGGCGAATTCAAAAGACAAAGTTGTTATCAAAAGTGAATTCAATGATCATCCTACATTGTCAGCTGAAATGATCTTTCCGGGTTTGAATAGGGATAGAGAGATGTCTGCAATGATCTCAGCTTTGACTCATATCGTTTCTGGAGATGTTCCAACCCAAAGTGACGCTGATATAGTTCATCATAATAGTGCAATTCAAGGAATGGTTTCTTTTACACCAAACATCACCAACAATATGTCTTCTCCTTCTACAACACAATCTTTGTCTTCTCCTTCTTCTTCATCTAATTATGCTACTAGTTCTTCTCTCAAGAGAACTAGGGAAGATGATAGATTTGTTGGCGATTTCAAATTCCTCGGTGGTTCCTCCCCTGCTTTGCCAACAAGAATTGCAGAAAGTTCAAGCATGAATAGGACAGCAACAAGAATAACAAGAGAAATGGGAAATGCAGTGTATGAATATAGAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGCAAAGAGAAAATACAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACCTTTGAAACTGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCCAAACTCAATTTCCCTGAAAATGTTACACTTCGTAACCCTCCACCAGCTACTACTACTACTCAATGGAACGTTTCGAATTCACCGGGTTCAATTGTTTCTATTACAACTTCTACTGATCCTGTTGTTCATACTAGACCTTTTCCTAACTCTTCTCAGCATTCGACAAACTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTTCTGTAAGGAATGTTTATGATGATAATGTGATTATGGCTTCTTCTATGGCTTCTCATCTACAATCTTCGTCATCGTCGCCAGCTTCTTCTTTGTCATCATCTTCTTCTGCATTTGTTTCTTCTATGCAGGGCAATACTCCAGTTTCCTCGTACTTTTCTACTCAGTTGCCACCTTGGTCAACTTCGGATCATAGCTCTTCTCCGTCTAGATGA

Protein sequence

>Msa1374450

MCMLKVANSKDKVVIKSEFNDHPTLSAEMIFPGLNRDREMSAMISALTHIVSGDVPTQSDADIVHHNSAIQGMVSFTPNITNNMSSPSTTQSLSSPSSSSNYATSSSLKRTREDDRFVGDFKFLGGSSPALPTRIAESSSMNRTATRITREMGNAVYEYRRTENVVREGEAKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRNPPPATTTTQWNVSNSPGSIVSITTSTDPVVHTRPFPNSSQHSTNFYDRFQFSGIPSVRNVYDDNVIMASSMASHLQSSSSSPASSLSSSSSAFVSSMQGNTPVSSYFSTQLPPWSTSDHSSSPSR*