AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1374450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374450 MtrunA17_Chr3g0129421 91.477 352 25 1 1 352 1 347 0.0 571
Msa1374450 MtrunA17_Chr8g0383591 45.788 273 125 8 29 293 5 262 4.13e-64 206
Msa1374450 MtrunA17_Chr7g0221471 75.000 72 18 0 167 238 43 114 1.95e-32 119
Msa1374450 MtrunA17_Chr7g0221501 73.239 71 19 0 165 235 41 111 1.27e-31 117
Msa1374450 MtrunA17_Chr8g0375031 73.016 63 17 0 168 230 118 180 5.62e-29 112
Msa1374450 MtrunA17_Chr4g0044871 60.194 103 35 2 135 231 50 152 6.27e-29 112
Msa1374450 MtrunA17_Chr4g0044881 82.759 58 10 0 174 231 113 170 3.59e-28 110
Msa1374450 MtrunA17_Chr2g0295421 68.919 74 21 1 169 240 88 161 1.31e-27 109
Msa1374450 MtrunA17_Chr4g0044901 82.456 57 10 0 175 231 96 152 1.78e-27 108
Msa1374450 MtrunA17_Chr4g0044911 82.456 57 10 0 175 231 96 152 1.85e-27 108
Msa1374450 MtrunA17_Chr8g0344961 73.913 69 14 1 168 232 113 181 3.25e-27 110
Msa1374450 MtrunA17_Chr2g0334031 73.913 69 14 1 168 232 106 174 5.10e-27 110
Msa1374450 MtrunA17_Chr2g0282651 45.238 126 62 2 121 239 12 137 3.67e-26 105
Msa1374450 MtrunA17_Chr1g0195151 63.750 80 19 2 172 241 74 153 1.59e-25 104
Msa1374450 MtrunA17_Chr5g0396911 45.082 122 52 2 135 241 64 185 2.35e-25 104
Msa1374450 MtrunA17_Chr2g0316931 69.231 65 20 0 174 238 30 94 3.39e-25 101
Msa1374450 MtrunA17_Chr3g0131601 88.889 63 7 0 172 234 73 135 5.24e-25 102
Msa1374450 MtrunA17_Chr5g0438831 74.138 58 15 0 174 231 45 102 1.45e-24 101
Msa1374450 MtrunA17_Chr4g0055761 63.529 85 25 2 163 241 128 212 1.81e-24 100
Msa1374450 MtrunA17_Chr4g0055801 67.532 77 22 2 161 234 138 214 3.40e-24 100
Msa1374450 MtrunA17_Chr2g0283171 70.968 62 17 1 171 231 59 120 5.29e-24 96.7
Msa1374450 MtrunA17_Chr4g0055781 66.234 77 23 2 161 234 86 162 5.77e-24 99.4
Msa1374450 MtrunA17_Chr3g0099871 75.862 58 14 0 174 231 26 83 6.57e-24 98.2
Msa1374450 MtrunA17_Chr1g0158971 66.176 68 19 1 172 235 112 179 1.25e-23 100
Msa1374450 MtrunA17_Chr4g0046161 54.023 87 38 2 151 235 32 118 2.20e-23 94.0
Msa1374450 MtrunA17_Chr8g0335321 63.235 68 24 1 173 239 94 161 2.33e-23 96.3
Msa1374450 MtrunA17_Chr8g0335311 68.254 63 19 1 173 234 94 156 2.54e-23 95.9
Msa1374450 MtrunA17_Chr5g0438801 70.690 58 17 0 174 231 50 107 4.05e-23 97.4
Msa1374450 MtrunA17_Chr2g0297331 61.972 71 26 1 163 232 2 72 5.28e-23 93.2
Msa1374450 MtrunA17_Chr8g0335331 72.131 61 16 1 175 234 125 185 5.68e-23 95.1
Msa1374450 MtrunA17_Chr2g0283181 70.968 62 17 1 171 231 145 206 1.30e-22 96.3
Msa1374450 MtrunA17_Chr4g0063751 46.465 99 45 2 173 271 5 95 2.82e-22 93.6
Msa1374450 MtrunA17_Chr4g0002631 64.516 62 22 0 172 233 5 66 3.69e-22 92.8
Msa1374450 MtrunA17_Chr3g0126321 68.966 58 18 0 173 230 111 168 4.06e-22 95.9
Msa1374450 MtrunA17_Chr2g0333011 66.129 62 21 0 173 234 5 66 4.13e-22 92.0
Msa1374450 MtrunA17_Chr7g0250711 70.000 60 17 1 173 231 58 117 4.65e-22 92.8
Msa1374450 MtrunA17_Chr7g0250731 70.000 60 17 1 173 231 59 118 4.66e-22 92.8
Msa1374450 MtrunA17_Chr1g0196871 64.286 70 24 1 173 241 14 83 6.05e-22 89.4
Msa1374450 MtrunA17_Chr7g0250721 70.000 60 17 1 173 231 59 118 8.92e-22 92.0
Msa1374450 MtrunA17_Chr2g0282621 67.692 65 17 1 167 231 11 71 9.10e-22 90.9
Msa1374450 MtrunA17_Chr4g0003421 67.797 59 19 0 173 231 38 96 1.30e-21 92.4
Msa1374450 MtrunA17_Chr1g0184081 67.188 64 20 1 174 236 20 83 1.49e-21 89.7
Msa1374450 MtrunA17_Chr3g0137174 62.903 62 23 0 172 233 5 66 1.53e-21 90.9
Msa1374450 MtrunA17_Chr4g0026881 68.750 64 19 1 172 234 94 157 1.72e-21 92.0
Msa1374450 MtrunA17_Chr1g0170531 65.152 66 22 1 170 234 84 149 2.02e-21 91.7
Msa1374450 MtrunA17_Chr6g0461941 83.333 66 11 0 170 235 15 80 2.86e-21 90.9
Msa1374450 MtrunA17_Chr1g0186731 64.615 65 22 1 168 231 14 78 3.05e-21 89.0
Msa1374450 MtrunA17_Chr7g0232261 59.155 71 28 1 175 245 61 130 8.22e-21 90.1
Msa1374450 MtrunA17_Chr7g0275841 54.795 73 32 1 175 247 28 99 1.01e-20 88.2
Msa1374450 MtrunA17_Chr8g0367911 66.667 60 20 0 171 230 40 99 1.20e-20 90.9
Msa1374450 MtrunA17_Chr7g0261101 72.131 61 16 1 172 231 17 77 1.38e-20 87.0
Msa1374450 MtrunA17_Chr8g0334801 57.534 73 30 1 175 247 52 123 1.62e-20 88.6
Msa1374450 MtrunA17_Chr6g0486701 65.517 58 20 0 175 232 44 101 2.06e-20 88.6
Msa1374450 MtrunA17_Chr5g0425561 67.797 59 19 0 173 231 171 229 2.24e-20 91.3
Msa1374450 MtrunA17_Chr3g0140161 55.128 78 34 1 166 243 34 110 2.29e-20 87.8
Msa1374450 MtrunA17_Chr8g0387801 67.241 58 19 0 173 230 105 162 2.36e-20 90.5
Msa1374450 MtrunA17_Chr7g0257911 56.410 78 34 0 171 248 27 104 2.67e-20 89.7
Msa1374450 MtrunA17_Chr4g0026931 66.154 65 21 1 172 235 128 192 3.09e-20 89.4
Msa1374450 MtrunA17_Chr8g0390091 67.241 58 19 0 175 232 37 94 3.19e-20 88.6
Msa1374450 MtrunA17_Chr7g0261151 71.667 60 16 1 174 232 19 78 3.37e-20 85.9
Msa1374450 MtrunA17_Chr3g0115631 66.102 59 20 0 173 231 148 206 4.17e-20 90.1
Msa1374450 MtrunA17_Chr1g0196781 60.606 66 26 0 166 231 143 208 5.51e-20 89.4
Msa1374450 MtrunA17_Chr2g0323171 62.903 62 22 1 175 236 65 125 5.86e-20 86.7
Msa1374450 MtrunA17_Chr2g0331231 62.069 58 22 0 175 232 41 98 7.11e-20 86.7
Msa1374450 MtrunA17_Chr5g0412641 58.442 77 29 1 174 250 45 118 8.37e-20 89.4
Msa1374450 MtrunA17_Chr8g0340311 45.833 96 50 2 175 270 47 140 9.77e-20 86.3
Msa1374450 MtrunA17_Chr7g0253424 59.091 66 27 0 174 239 38 103 1.03e-19 87.8
Msa1374450 MtrunA17_Chr1g0201671 65.934 91 19 2 182 272 146 224 1.23e-19 89.0
Msa1374450 MtrunA17_Chr7g0261181 61.628 86 26 3 168 246 2 87 1.48e-19 83.6
Msa1374450 MtrunA17_Chr8g0382491 64.407 59 21 0 173 231 111 169 1.48e-19 87.8
Msa1374450 MtrunA17_Chr4g0023411 46.809 94 49 1 175 268 65 157 1.61e-19 85.5
Msa1374450 MtrunA17_Chr1g0186671 64.062 64 22 1 174 236 18 81 1.68e-19 84.0
Msa1374450 MtrunA17_Chr3g0134161 62.069 58 22 0 175 232 45 102 1.70e-19 84.7
Msa1374450 MtrunA17_Chr5g0401871 53.623 69 32 0 170 238 20 88 1.85e-19 85.1
Msa1374450 MtrunA17_Chr4g0055951 63.793 58 21 0 175 232 74 131 2.05e-19 86.7
Msa1374450 MtrunA17_Chr5g0432821 63.158 57 21 0 175 231 124 180 2.16e-19 87.0
Msa1374450 MtrunA17_Chr2g0324131 63.333 60 22 0 173 232 216 275 2.93e-19 88.6
Msa1374450 MtrunA17_Chr5g0437371 64.407 59 21 0 172 230 63 121 3.85e-19 87.4
Msa1374450 MtrunA17_Chr1g0153151 59.677 62 25 0 171 232 40 101 4.31e-19 84.0
Msa1374450 MtrunA17_Chr4g0017851 52.857 70 31 1 167 236 112 179 7.43e-19 85.9
Msa1374450 MtrunA17_Chr6g0461271 53.425 73 34 0 167 239 25 97 7.46e-19 86.3
Msa1374450 MtrunA17_Chr5g0399441 62.069 58 22 0 175 232 28 85 1.14e-18 82.8
Msa1374450 MtrunA17_Chr1g0183981 63.333 60 21 1 172 230 72 131 1.34e-18 83.6
Msa1374450 MtrunA17_Chr5g0437671 61.290 62 24 0 171 232 81 142 1.38e-18 86.3
Msa1374450 MtrunA17_Chr7g0217991 57.143 63 27 0 168 230 35 97 1.66e-18 86.7
Msa1374450 MtrunA17_Chr8g0346741 50.667 75 35 1 175 247 39 113 1.79e-18 82.0
Msa1374450 MtrunA17_Chr6g0473981 39.844 128 58 2 120 247 17 125 2.27e-18 83.6
Msa1374450 MtrunA17_Chr1g0184011 67.273 55 17 1 177 230 86 140 2.44e-18 82.8
Msa1374450 MtrunA17_Chr4g0066931 59.649 57 23 0 174 230 52 108 2.83e-18 84.7
Msa1374450 MtrunA17_Chr6g0473741 56.164 73 31 1 175 247 66 137 2.84e-18 82.8
Msa1374450 MtrunA17_Chr6g0453661 58.333 60 25 0 171 230 34 93 4.09e-18 85.1
Msa1374450 MtrunA17_Chr1g0184031 61.290 62 23 1 170 230 79 140 4.65e-18 82.0
Msa1374450 MtrunA17_Chr1g0184071 60.938 64 24 1 168 230 62 125 5.32e-18 80.9
Msa1374450 MtrunA17_Chr2g0286161 61.404 57 22 0 174 230 49 105 5.96e-18 83.2
Msa1374450 MtrunA17_Chr1g0186681 56.338 71 29 1 168 236 12 82 7.12e-18 79.3
Msa1374450 MtrunA17_Chr1g0170471 60.656 61 23 1 182 241 90 150 7.15e-18 80.5
Msa1374450 MtrunA17_Chr6g0464581 87.879 66 8 0 169 234 174 239 8.06e-18 84.3
Msa1374450 MtrunA17_Chr1g0184061 61.667 60 22 1 172 230 74 133 1.05e-17 81.3
Msa1374450 MtrunA17_Chr6g0474001 39.062 128 59 2 120 247 17 125 1.07e-17 82.0
Msa1374450 MtrunA17_Chr7g0252381 53.425 73 30 1 174 246 41 109 1.10e-17 82.4
Msa1374450 MtrunA17_Chr8g0378811 61.017 59 23 0 172 230 52 110 1.28e-17 82.0
Msa1374450 MtrunA17_Chr1g0183961 72.881 59 15 1 174 231 26 84 2.11e-17 78.6
Msa1374450 MtrunA17_Chr7g0265851 54.795 73 32 1 175 247 24 95 2.56e-17 79.7
Msa1374450 MtrunA17_Chr4g0062551 58.333 60 25 0 172 231 50 109 2.94e-17 77.8
Msa1374450 MtrunA17_Chr8g0345531 66.667 48 16 0 174 221 115 162 2.95e-17 82.0
Msa1374450 MtrunA17_Chr6g0473881 51.190 84 34 2 167 244 96 178 2.96e-17 81.3
Msa1374450 MtrunA17_Chr1g0189941 58.929 56 23 0 175 230 24 79 3.39e-17 78.2
Msa1374450 MtrunA17_Chr8g0350701 50.704 71 35 0 173 243 25 95 3.50e-17 81.3
Msa1374450 MtrunA17_Chr6g0473861 54.795 73 32 1 175 247 63 134 5.18e-17 80.5
Msa1374450 MtrunA17_Chr4g0062161 58.333 60 25 0 172 231 50 109 5.42e-17 78.6
Msa1374450 MtrunA17_Chr6g0473781 55.714 70 30 1 175 244 57 125 5.85e-17 79.3
Msa1374450 MtrunA17_Chr4g0042761 53.030 66 31 0 165 230 38 103 6.84e-17 80.5
Msa1374450 MtrunA17_Chr5g0396191 67.241 58 19 0 175 232 11 68 9.90e-17 77.4
Msa1374450 MtrunA17_Chr6g0473961 53.425 73 33 1 175 247 54 125 1.01e-16 78.2
Msa1374450 MtrunA17_Chr6g0473941 53.425 73 33 1 175 247 33 104 1.10e-16 77.8
Msa1374450 MtrunA17_Chr1g0203861 54.286 70 31 1 175 244 44 112 1.13e-16 77.8
Msa1374450 MtrunA17_Chr6g0473971 52.055 73 34 1 175 247 54 125 1.42e-16 78.6
Msa1374450 MtrunA17_Chr1g0150671 54.237 59 27 0 173 231 44 102 1.83e-16 79.0
Msa1374450 MtrunA17_Chr1g0183931 55.294 85 37 1 165 248 91 175 1.85e-16 78.2
Msa1374450 MtrunA17_Chr1g0150691 54.237 59 27 0 173 231 20 78 2.02e-16 77.4
Msa1374450 MtrunA17_Chr2g0301191 52.239 67 26 1 175 241 19 79 2.83e-16 77.0
Msa1374450 MtrunA17_Chr8g0345551 66.667 48 16 0 175 222 117 164 3.00e-16 79.3
Msa1374450 MtrunA17_Chr1g0150661 52.542 59 28 0 173 231 33 91 3.05e-16 77.0
Msa1374450 MtrunA17_Chr1g0150631 54.237 59 27 0 173 231 36 94 3.06e-16 77.0
Msa1374450 MtrunA17_Chr3g0136551 46.154 65 35 0 168 232 58 122 9.64e-16 76.6
Msa1374450 MtrunA17_Chr1g0155751 62.121 66 22 1 175 240 39 101 1.07e-15 76.3
Msa1374450 MtrunA17_Chr2g0301171 50.746 67 27 1 175 241 19 79 1.21e-15 74.7
Msa1374450 MtrunA17_Chr1g0200931 56.140 57 24 1 175 230 23 79 1.38e-15 73.2
Msa1374450 MtrunA17_Chr6g0473931 50.685 73 35 1 175 247 33 104 1.50e-15 74.3
Msa1374450 MtrunA17_Chr1g0149331 66.667 60 20 0 172 231 4 63 1.74e-15 74.3
Msa1374450 MtrunA17_Chr1g0209891 54.098 61 24 1 174 230 53 113 2.37e-15 75.9
Msa1374450 MtrunA17_Chr7g0261201 67.692 65 20 1 172 235 95 159 3.02e-15 74.7
Msa1374450 MtrunA17_Chr3g0083501 60.784 51 20 0 182 232 2 52 5.25e-15 69.3
Msa1374450 MtrunA17_Chr7g0243431 58.730 63 19 1 175 230 78 140 5.27e-15 76.3
Msa1374450 MtrunA17_Chr6g0486711 67.241 58 19 0 175 232 49 106 6.42e-15 73.6
Msa1374450 MtrunA17_Chr6g0473771 50.000 74 36 1 175 248 43 115 8.77e-15 70.1
Msa1374450 MtrunA17_Chr7g0261171 55.952 84 36 1 172 254 82 165 9.12e-15 73.2
Msa1374450 MtrunA17_Chr3g0137831 67.797 59 19 0 173 231 6 64 9.69e-15 72.4
Msa1374450 MtrunA17_Chr2g0301181 44.304 79 38 1 163 241 7 79 9.90e-15 72.8
Msa1374450 MtrunA17_Chr5g0438841 55.172 58 26 0 174 231 15 72 1.07e-14 71.2
Msa1374450 MtrunA17_Chr5g0396171 50.000 58 29 0 177 234 26 83 1.44e-14 68.9
Msa1374450 MtrunA17_Chr1g0205961 58.333 48 20 0 174 221 114 161 1.79e-14 73.9
Msa1374450 MtrunA17_Chr3g0142081 65.517 58 20 0 175 232 39 96 1.91e-14 72.0
Msa1374450 MtrunA17_Chr4g0057241 50.588 85 32 3 175 259 15 89 2.25e-14 70.5
Msa1374450 MtrunA17_Chr5g0423811 73.171 41 11 0 174 214 87 127 3.24e-14 72.4
Msa1374450 MtrunA17_Chr1g0146191 66.667 57 19 0 175 231 47 103 3.25e-14 72.0
Msa1374450 MtrunA17_Chr5g0396301 51.613 62 28 1 173 232 16 77 2.70e-13 67.4
Msa1374450 MtrunA17_Chr1g0186741 61.538 65 24 1 172 235 70 134 3.06e-13 68.2
Msa1374450 MtrunA17_Chr1g0167781 66.102 59 19 1 173 230 80 138 3.82e-13 68.2
Msa1374450 MtrunA17_Chr3g0136541 50.000 56 28 0 177 232 42 97 4.69e-13 68.2
Msa1374450 MtrunA17_Chr2g0321071 51.562 64 29 2 175 236 47 110 9.07e-13 67.0
Msa1374450 MtrunA17_Chr7g0225131 52.632 57 24 1 175 231 29 82 1.02e-12 63.5
Msa1374450 MtrunA17_Chr5g0396181 47.945 73 37 1 175 247 21 92 1.24e-12 66.2
Msa1374450 MtrunA17_Chr4g0002771 66.102 59 20 0 172 230 74 132 3.78e-12 65.1
Msa1374450 MtrunA17_Chr5g0396741 64.706 68 21 1 172 239 114 178 4.53e-12 66.2
Msa1374450 MtrunA17_Chr5g0424051 49.438 89 38 2 170 257 91 173 9.89e-12 65.1
Msa1374450 MtrunA17_Chr5g0422501 49.275 69 29 2 166 230 94 160 1.92e-11 65.1
Msa1374450 MtrunA17_Chr6g0473791 55.102 49 22 0 175 223 57 105 2.03e-11 61.6
Msa1374450 MtrunA17_Chr1g0198661 57.143 56 22 1 174 229 63 116 2.08e-11 64.7
Msa1374450 MtrunA17_Chr5g0398091 41.772 79 40 1 175 247 54 132 5.00e-11 62.0
Msa1374450 MtrunA17_Chr5g0398081 48.438 64 27 1 175 232 49 112 8.48e-11 61.2
Msa1374450 MtrunA17_Chr3g0108241 53.226 62 28 1 175 235 115 176 8.58e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1374450 AT5G61890.1 84.615 65 10 0 172 236 87 151 2.58e-33 124
Msa1374450 AT5G13330.1 69.767 86 19 2 172 257 36 114 1.12e-32 122
Msa1374450 AT2G33710.1 72.727 77 17 1 172 244 67 143 6.19e-32 120
Msa1374450 AT2G33710.2 72.727 77 17 1 172 244 67 143 9.15e-32 120
Msa1374450 AT5G64750.1 59.804 102 31 1 182 273 192 293 1.16e-30 120
Msa1374450 AT2G47520.1 73.134 67 16 1 167 231 40 106 1.05e-28 110
Msa1374450 AT5G50080.2 88.060 67 8 0 170 236 81 147 2.83e-27 107
Msa1374450 AT5G50080.1 88.060 67 8 0 170 236 72 138 3.02e-27 107
Msa1374450 AT1G43160.1 89.231 65 7 0 170 234 56 120 7.03e-27 105
Msa1374450 AT5G07310.1 84.615 65 10 0 172 236 89 153 2.26e-26 106
Msa1374450 AT1G72360.1 62.162 74 28 0 174 247 24 97 4.32e-26 104
Msa1374450 AT1G72360.2 58.537 82 32 1 168 247 67 148 5.54e-26 105
Msa1374450 AT1G72360.3 58.537 82 32 1 168 247 65 146 5.82e-26 105
Msa1374450 AT4G11140.1 62.667 75 21 1 173 247 85 152 1.63e-25 104
Msa1374450 AT1G28370.2 71.875 64 17 1 168 231 52 114 2.41e-25 102
Msa1374450 AT1G28370.1 71.875 64 17 1 168 231 14 76 2.64e-25 100
Msa1374450 AT3G16770.1 74.603 63 14 1 172 232 74 136 4.61e-25 102
Msa1374450 AT5G47220.1 65.789 76 25 1 173 247 115 190 5.74e-25 102
Msa1374450 AT1G03800.1 72.414 58 16 0 174 231 52 109 1.89e-24 100
Msa1374450 AT3G15210.1 71.429 63 18 0 174 236 24 86 1.90e-24 100
Msa1374450 AT5G47230.1 70.423 71 20 1 170 239 151 221 1.95e-24 102
Msa1374450 AT4G17500.1 70.000 70 20 1 173 241 146 215 3.06e-24 100
Msa1374450 AT4G17490.1 66.667 75 24 1 166 239 128 202 9.63e-24 99.8
Msa1374450 AT5G44210.1 51.515 99 42 1 175 273 33 125 1.08e-23 97.4
Msa1374450 AT5G51190.1 66.197 71 22 2 162 231 60 129 1.48e-23 97.8
Msa1374450 AT4G27950.1 51.923 104 38 3 169 269 112 206 2.76e-23 99.4
Msa1374450 AT2G22200.1 58.228 79 32 1 170 247 66 144 3.71e-23 97.4
Msa1374450 AT2G44840.1 74.576 59 14 1 174 231 91 149 9.34e-23 95.5
Msa1374450 AT3G20310.1 50.505 99 44 2 174 271 26 120 1.08e-22 95.9
Msa1374450 AT1G15360.1 67.213 61 20 0 173 233 5 65 1.57e-22 94.4
Msa1374450 AT1G15360.2 67.213 61 20 0 173 233 5 65 1.57e-22 94.4
Msa1374450 AT1G50640.1 72.414 58 16 0 174 231 27 84 1.87e-22 94.7
Msa1374450 AT5G61600.1 66.667 63 20 1 173 234 86 148 3.56e-22 94.4
Msa1374450 AT5G53290.1 61.972 71 27 0 160 230 110 180 3.79e-22 96.7
Msa1374450 AT1G28360.1 67.742 62 20 0 175 236 12 73 4.57e-22 92.8
Msa1374450 AT4G23750.2 65.000 60 21 0 171 230 118 177 9.70e-22 95.1
Msa1374450 AT4G23750.1 65.000 60 21 0 171 230 118 177 9.70e-22 95.1
Msa1374450 AT4G28140.1 63.077 65 24 0 171 235 139 203 2.02e-21 93.6
Msa1374450 AT5G43410.1 67.188 64 20 1 174 236 14 77 2.09e-21 89.4
Msa1374450 AT4G13620.1 61.111 72 28 0 161 232 218 289 2.34e-21 94.7
Msa1374450 AT5G65130.2 64.516 62 22 0 173 234 111 172 2.68e-21 92.8
Msa1374450 AT2G46310.1 61.111 72 22 1 174 245 98 163 2.72e-21 93.2
Msa1374450 AT5G65130.1 64.516 62 22 0 173 234 109 170 2.92e-21 92.8
Msa1374450 AT1G71450.1 65.517 58 20 0 175 232 24 81 2.95e-21 90.5
Msa1374450 AT3G23230.1 71.186 59 16 1 174 231 19 77 2.96e-21 89.0
Msa1374450 AT4G39780.1 64.516 62 22 0 171 232 89 150 3.99e-21 92.0
Msa1374450 AT3G57600.1 59.459 74 28 1 174 247 27 98 4.80e-21 92.0
Msa1374450 AT3G60490.1 57.534 73 31 0 160 232 56 128 5.00e-21 91.7
Msa1374450 AT4G06746.1 58.730 63 26 0 172 234 33 95 6.16e-21 88.6
Msa1374450 AT5G25390.2 64.407 59 21 0 173 231 5 63 6.22e-21 89.7
Msa1374450 AT5G07580.1 61.644 73 26 2 160 231 96 167 6.75e-21 90.1
Msa1374450 AT1G22190.1 65.000 60 21 0 173 232 81 140 9.17e-21 90.9
Msa1374450 AT5G25190.1 61.290 62 24 0 172 233 5 66 1.33e-20 88.6
Msa1374450 AT1G12980.1 39.583 144 68 5 162 305 44 168 1.41e-20 91.7
Msa1374450 AT2G35700.1 59.420 69 27 1 175 243 45 112 1.93e-20 88.6
Msa1374450 AT1G36060.1 66.102 59 20 0 173 231 141 199 1.94e-20 90.9
Msa1374450 AT3G61630.1 56.410 78 29 1 158 230 83 160 2.42e-20 90.9
Msa1374450 AT2G20880.1 64.516 62 22 0 171 232 183 244 2.63e-20 90.9
Msa1374450 AT1G78080.1 66.102 59 20 0 173 231 150 208 4.25e-20 90.5
Msa1374450 AT3G16280.2 59.155 71 28 1 175 245 79 148 7.71e-20 88.2
Msa1374450 AT1G75490.1 55.844 77 27 2 175 246 42 116 7.72e-20 87.0
Msa1374450 AT4G32800.1 57.576 66 28 0 167 232 11 76 7.89e-20 87.4
Msa1374450 AT3G50260.1 36.029 136 81 2 172 303 18 151 8.18e-20 85.5
Msa1374450 AT2G25820.1 56.164 73 31 1 175 247 26 97 8.63e-20 87.4
Msa1374450 AT3G16280.1 59.155 71 28 1 175 245 61 130 9.02e-20 87.8
Msa1374450 AT4G34410.1 82.456 57 10 0 175 231 136 192 9.05e-20 88.2
Msa1374450 AT4G36900.1 62.069 58 22 0 175 232 30 87 1.35e-19 86.3
Msa1374450 AT1G01250.1 54.930 71 31 1 175 245 45 114 1.36e-19 85.9
Msa1374450 AT4G16750.1 50.000 84 41 1 161 244 26 108 1.82e-19 85.5
Msa1374450 AT2G23340.1 62.069 58 22 0 175 232 28 85 2.13e-19 85.1
Msa1374450 AT5G67190.1 61.667 60 23 0 173 232 19 78 3.07e-19 84.7
Msa1374450 AT2G40340.2 58.333 72 29 1 175 246 14 84 3.32e-19 87.0
Msa1374450 AT2G40340.5 58.333 72 29 1 175 246 14 84 3.32e-19 87.0
Msa1374450 AT2G40340.4 58.333 72 29 1 175 246 14 84 3.32e-19 87.0
Msa1374450 AT4G18450.1 70.000 60 16 2 173 230 108 167 3.39e-19 87.4
Msa1374450 AT5G11590.1 65.517 58 20 0 175 232 51 108 3.88e-19 85.9
Msa1374450 AT3G11020.1 65.000 60 21 0 175 234 78 137 4.23e-19 87.4
Msa1374450 AT2G44940.1 50.562 89 35 2 169 257 94 173 6.44e-19 86.3
Msa1374450 AT3G23240.1 62.903 62 22 1 170 230 77 138 8.52e-19 84.3
Msa1374450 AT5G19790.1 64.407 59 21 0 172 230 19 77 9.32e-19 85.1
Msa1374450 AT5G25390.1 62.712 59 19 1 173 231 5 60 9.47e-19 83.6
Msa1374450 AT5G05410.2 47.525 101 46 4 175 273 79 174 1.00e-18 85.9
Msa1374450 AT1G46768.3 46.591 88 44 1 148 232 1 88 1.05e-18 82.0
Msa1374450 AT1G19210.1 58.333 60 25 0 174 233 11 70 1.07e-18 83.6
Msa1374450 AT1G46768.1 46.591 88 44 1 148 232 1 88 1.08e-18 82.4
Msa1374450 AT1G46768.2 46.591 88 44 1 148 232 1 88 1.08e-18 82.4
Msa1374450 AT1G24590.1 66.667 57 19 0 174 230 57 113 1.20e-18 85.9
Msa1374450 AT5G05410.1 47.525 101 46 4 175 273 79 174 1.24e-18 86.3
Msa1374450 AT2G40340.6 58.333 72 29 1 175 246 79 149 1.37e-18 86.3
Msa1374450 AT2G40340.1 58.333 72 29 1 175 246 72 142 1.39e-18 86.3
Msa1374450 AT2G40340.3 58.333 72 29 1 175 246 72 142 1.56e-18 85.5
Msa1374450 AT1G12890.1 52.439 82 33 2 161 240 11 88 2.56e-18 83.2
Msa1374450 AT2G31230.1 59.701 67 26 1 170 235 81 147 2.58e-18 83.6
Msa1374450 AT5G13910.1 47.500 80 38 1 167 246 12 87 4.13e-18 82.4
Msa1374450 AT1G74930.1 47.436 78 35 1 162 233 2 79 4.79e-18 81.6
Msa1374450 AT1G21910.1 59.649 57 23 0 175 231 50 106 5.43e-18 82.4
Msa1374450 AT5G25810.1 62.069 58 22 0 175 232 36 93 5.83e-18 82.0
Msa1374450 AT4G25470.1 52.055 73 35 0 175 247 51 123 6.07e-18 82.0
Msa1374450 AT4G25490.1 60.606 66 25 1 175 239 48 113 9.30e-18 81.6
Msa1374450 AT5G18450.1 62.500 56 21 0 175 230 34 89 1.12e-17 83.2
Msa1374450 AT4G25480.1 54.286 70 32 0 175 244 51 120 1.34e-17 81.3
Msa1374450 AT1G22985.1 62.903 62 20 1 172 230 72 133 1.57e-17 79.3
Msa1374450 AT5G18560.1 61.404 57 22 0 174 230 54 110 1.67e-17 83.2
Msa1374450 AT5G21960.1 56.250 64 28 0 170 233 2 65 1.89e-17 80.5
Msa1374450 AT1G53910.1 77.049 61 14 0 172 232 122 182 2.04e-17 82.8
Msa1374450 AT1G53910.2 77.049 61 14 0 172 232 122 182 2.04e-17 82.8
Msa1374450 AT1G53910.3 77.049 61 14 0 172 232 120 180 2.09e-17 82.8
Msa1374450 AT3G14230.2 55.102 98 39 1 172 264 121 218 2.47e-17 82.8
Msa1374450 AT3G14230.3 55.102 98 39 1 172 264 120 217 2.57e-17 82.8
Msa1374450 AT3G14230.1 55.102 98 39 1 172 264 125 222 2.64e-17 82.8
Msa1374450 AT4G31060.1 52.459 61 29 0 173 233 25 85 7.93e-17 78.2
Msa1374450 AT5G51990.1 59.091 66 26 1 175 239 54 119 1.57e-16 78.2
Msa1374450 AT1G53170.1 73.684 57 15 0 174 230 30 86 1.58e-16 77.4
Msa1374450 AT1G28160.1 63.158 57 21 0 174 230 38 94 1.95e-16 78.6
Msa1374450 AT2G36450.1 59.677 62 24 1 175 235 15 76 2.04e-16 77.0
Msa1374450 AT1G68550.1 66.000 50 17 0 172 221 110 159 2.26e-16 79.3
Msa1374450 AT1G68550.2 66.000 50 17 0 172 221 110 159 2.26e-16 79.3
Msa1374450 AT5G67000.1 53.968 63 29 0 167 229 113 175 3.28e-16 76.3
Msa1374450 AT2G40350.2 57.895 57 24 0 175 231 74 130 3.59e-16 75.9
Msa1374450 AT5G11190.1 71.186 59 17 0 173 231 5 63 3.71e-16 76.3
Msa1374450 AT2G40350.1 57.895 57 24 0 175 231 67 123 4.28e-16 75.5
Msa1374450 AT3G23220.1 63.768 69 24 1 174 241 13 81 7.78e-16 73.9
Msa1374450 AT1G71130.1 57.812 64 22 1 172 230 76 139 1.37e-15 73.9
Msa1374450 AT1G63030.2 52.857 70 32 1 175 244 30 98 1.63e-15 74.3
Msa1374450 AT1G63030.1 52.857 70 32 1 175 244 30 98 1.63e-15 74.3
Msa1374450 AT5G61590.1 68.254 63 19 1 170 231 102 164 3.55e-15 73.9
Msa1374450 AT1G22810.1 35.507 138 74 4 169 300 8 136 8.30e-15 71.2
Msa1374450 AT1G04370.1 67.188 64 20 1 174 236 19 82 1.16e-14 70.9
Msa1374450 AT1G06160.1 65.625 64 21 1 173 235 80 143 4.68e-14 71.6
Msa1374450 AT1G33760.1 63.333 60 22 0 175 234 20 79 5.44e-14 70.1
Msa1374450 AT2G38340.1 39.815 108 53 3 174 269 69 176 7.27e-14 70.9
Msa1374450 AT2G40220.1 65.000 60 21 0 171 230 51 110 2.45e-13 70.5
Msa1374450 AT1G12610.1 53.571 56 26 0 175 230 30 85 2.99e-13 68.6
Msa1374450 AT1G49120.1 38.043 92 50 1 175 259 87 178 7.71e-13 69.3
Msa1374450 AT1G64380.1 60.274 73 26 1 167 239 128 197 1.10e-12 68.6
Msa1374450 AT3G25890.1 64.444 45 16 0 177 221 133 177 1.22e-12 68.6
Msa1374450 AT3G25890.2 64.444 45 16 0 177 221 133 177 1.22e-12 68.6
Msa1374450 AT1G77640.1 58.209 67 27 1 173 239 41 106 2.31e-12 66.6
Msa1374450 AT1G71520.1 45.455 66 32 1 174 235 13 78 5.75e-12 63.2
Msa1374450 AT1G68840.2 56.140 57 23 1 174 230 64 118 1.03e-11 65.9
Msa1374450 AT1G68840.1 56.140 57 23 1 174 230 64 118 1.03e-11 65.9
Msa1374450 AT1G80580.1 53.846 78 27 1 162 230 94 171 6.37e-11 62.8

Find 67 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGACTCATATCGTTTC+TGG 0.134577 tig0019487:-128792 Msa1374450:CDS
GTCAGCTGAAATGATCTTTC+CGG 0.239475 tig0019487:-128853 Msa1374450:CDS
TGTGATTATGGCTTCTTCTA+TGG 0.247539 tig0019487:-127490 Msa1374450:CDS
GACAAAGACCATGGGGAAAA+TGG 0.294498 tig0019487:-127860 Msa1374450:CDS
TTATGATGATAATGTGATTA+TGG 0.294940 tig0019487:-127502 Msa1374450:CDS
TGCATTTGTTTCTTCTATGC+AGG 0.323066 tig0019487:-127409 Msa1374450:CDS
AACAAGAATAACAAGAGAAA+TGG 0.338558 tig0019487:-127961 Msa1374450:CDS
TGATCTTTCCGGGTTTGAAT+AGG 0.341446 tig0019487:-128842 Msa1374450:CDS
GACAAAGATTGTGTTGTAGA+AGG 0.344837 tig0019487:+128669 None:intergenic
CATACTCTTGCTGCTTTGAA+TGG 0.348828 tig0019487:+127819 None:intergenic
ATTTGGTGCTTACTTCTTGT+TGG 0.349554 tig0019487:+128534 None:intergenic
TCAGCTGAAATGATCTTTCC+GGG 0.353680 tig0019487:-128852 Msa1374450:CDS
CATTCAAAGCAGCAAGAGTA+TGG 0.359272 tig0019487:-127818 Msa1374450:CDS
GATCTTTCCGGGTTTGAATA+GGG 0.363685 tig0019487:-128841 Msa1374450:CDS
AACTATATCAGCGTCACTTT+GGG 0.369074 tig0019487:+128758 None:intergenic
GTAGAAAAGTACGAGGAAAC+TGG 0.377693 tig0019487:+127378 None:intergenic
TTACTTCTTGTTGGCAAAGC+AGG 0.391826 tig0019487:+128543 None:intergenic
AGGGAAGATGATAGATTTGT+TGG 0.411621 tig0019487:-128594 Msa1374450:CDS
GACATATTGTTGGTGATGTT+TGG 0.418592 tig0019487:+128696 None:intergenic
GAACTATATCAGCGTCACTT+TGG 0.425440 tig0019487:+128757 None:intergenic
CAGAAAGTTCAAGCATGAAT+AGG 0.431072 tig0019487:-127989 Msa1374450:CDS
GTCGAATGCTGAGAAGAGTT+AGG 0.441356 tig0019487:+127576 None:intergenic
GTTCTTCTCTCAAGAGAACT+AGG 0.443989 tig0019487:-128614 Msa1374450:CDS
TTTCGGGTATTCCTTCTGTA+AGG 0.446007 tig0019487:-127530 Msa1374450:CDS
AAAGGTCTAGTATGAACAAC+AGG 0.456920 tig0019487:+127600 None:intergenic
ACAAGAATAACAAGAGAAAT+GGG 0.461167 tig0019487:-127960 Msa1374450:CDS
ACAAAGACCATGGGGAAAAT+GGG 0.467232 tig0019487:-127859 Msa1374450:CDS
TTTCTACTCAGTTGCCACCT+TGG 0.468709 tig0019487:-127362 Msa1374450:CDS
CATCATAATAGTGCAATTCA+AGG 0.473295 tig0019487:-128735 Msa1374450:CDS
TACTTCTTGTTGGCAAAGCA+GGG 0.484311 tig0019487:+128544 None:intergenic
GCATTTGTTTCTTCTATGCA+GGG 0.489243 tig0019487:-127408 Msa1374450:CDS
TGCTGAGAAGAGTTAGGAAA+AGG 0.497086 tig0019487:+127582 None:intergenic
GTTGCCACCTTGGTCAACTT+CGG 0.500889 tig0019487:-127352 Msa1374450:CDS
GTAGTAGTAGTAGCTGGTGG+AGG 0.503347 tig0019487:+127681 None:intergenic
ATGGAACGTTTCGAATTCAC+CGG 0.511700 tig0019487:-127655 Msa1374450:CDS
AAAGCAGCAAGAGTATGGTT+AGG 0.512639 tig0019487:-127813 Msa1374450:CDS
AGAAGGAGAAGACATATTGT+TGG 0.517884 tig0019487:+128686 None:intergenic
AGCTGCTTCAGCAGTTTCAA+AGG 0.523875 tig0019487:+127788 None:intergenic
ACAGAGAATGTAGTAAGAGA+AGG 0.524432 tig0019487:-127912 Msa1374450:CDS
GCATAATTAGATGAAGAAGA+AGG 0.527566 tig0019487:+128642 None:intergenic
TAATAGTGCAATTCAAGGAA+TGG 0.533500 tig0019487:-128730 Msa1374450:CDS
CATTGAGTAGTAGTAGTAGC+TGG 0.538997 tig0019487:+127675 None:intergenic
CAGCTACTACTACTACTCAA+TGG 0.541524 tig0019487:-127674 Msa1374450:CDS
ATATCAGCGTCACTTTGGGT+TGG 0.542704 tig0019487:+128762 None:intergenic
GTTGGCGATTTCAAATTCCT+CGG 0.544131 tig0019487:-128576 Msa1374450:CDS
TAGTAGTAGTAGCTGGTGGA+GGG 0.544536 tig0019487:+127682 None:intergenic
TTGAAAATTGATCATCTAGA+CGG 0.545243 tig0019487:+127315 None:intergenic
GATGATGACAAAGAAGAAGC+TGG 0.563016 tig0019487:+127438 None:intergenic
TTACATGTGTATGTTAAAGG+TGG 0.575019 tig0019487:-128931 None:intergenic
ATCATTTCAGCTGACAATGT+AGG 0.579346 tig0019487:+128861 None:intergenic
TTCTTCTCTCAAGAGAACTA+GGG 0.579919 tig0019487:-128613 Msa1374450:CDS
TCATAAACATTCCTTACAGA+AGG 0.587081 tig0019487:+127519 None:intergenic
AGGAGTGAGACAAAGACCAT+GGG 0.591805 tig0019487:-127868 Msa1374450:CDS
TCTTGTTGGCAAAGCAGGGG+AGG 0.597058 tig0019487:+128548 None:intergenic
ACTTCTTGTTGGCAAAGCAG+GGG 0.605531 tig0019487:+128545 None:intergenic
TCTCTATCCCTATTCAAACC+CGG 0.612602 tig0019487:+128834 None:intergenic
GGCGATTTCAAATTCCTCGG+TGG 0.618201 tig0019487:-128573 Msa1374450:CDS
GAGGAGTGAGACAAAGACCA+TGG 0.634731 tig0019487:-127869 Msa1374450:CDS
TGGAACGTTTCGAATTCACC+GGG 0.636608 tig0019487:-127654 Msa1374450:CDS
TGAGTAGTAGTAGTAGCTGG+TGG 0.652788 tig0019487:+127678 None:intergenic
GAAGCAAAGAGAAAATACAG+AGG 0.659331 tig0019487:-127888 Msa1374450:CDS
CTATGATCCGAAGTTGACCA+AGG 0.684304 tig0019487:+127345 None:intergenic
GTAATAGAAACAATTGAACC+CGG 0.689937 tig0019487:+127636 None:intergenic
TGATCCGAAGTTGACCAAGG+TGG 0.715416 tig0019487:+127348 None:intergenic
CAACTGAGTAGAAAAGTACG+AGG 0.723485 tig0019487:+127371 None:intergenic
GGAGTGAGACAAAGACCATG+GGG 0.727396 tig0019487:-127867 Msa1374450:CDS
AAGCAGGGGAGGAACCACCG+AGG 0.764284 tig0019487:+128559 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAATTGAAGAAAA+AGG + tig0019487:127756-127775 None:intergenic 10.0%
!! TTAAAGAAAATACATAAAAT+TGG + tig0019487:127964-127983 None:intergenic 10.0%
!! AAAAAATAAATTGAAGAAAA+AGG + tig0019487:127756-127775 None:intergenic 10.0%
!! TTAAAGAAAATACATAAAAT+TGG + tig0019487:127964-127983 None:intergenic 10.0%
!! AAAAGGAGAAATATTTAATT+TGG + tig0019487:127739-127758 None:intergenic 15.0%
!! TAATAATGTAAGTATAACTT+AGG - tig0019487:128051-128070 Msa1374450:intron 15.0%
!! AGTTAAATGTAATTATATGT+TGG + tig0019487:128127-128146 None:intergenic 15.0%
!!! ATATATGGTTTGTATATTTA+AGG - tig0019487:128184-128203 Msa1374450:intron 15.0%
!! AAAAGGAGAAATATTTAATT+TGG + tig0019487:127739-127758 None:intergenic 15.0%
!! TAATAATGTAAGTATAACTT+AGG - tig0019487:128051-128070 Msa1374450:intron 15.0%
!! AGTTAAATGTAATTATATGT+TGG + tig0019487:128127-128146 None:intergenic 15.0%
!!! ATATATGGTTTGTATATTTA+AGG - tig0019487:128184-128203 Msa1374450:intron 15.0%
!!! TTTATTTTTTAACTGAACTC+TGG + tig0019487:127858-127877 None:intergenic 20.0%
!! TAAATAAATTGAAGTCAGAT+CGG - tig0019487:127874-127893 Msa1374450:CDS 20.0%
!! AAGAAAATACATAAAATTGG+TGG + tig0019487:127961-127980 None:intergenic 20.0%
!! TTGTCTTTACTTCATATATA+TGG - tig0019487:128169-128188 Msa1374450:intron 20.0%
!!! GTAATAAGCTTTGTATTTAA+TGG + tig0019487:128223-128242 None:intergenic 20.0%
!!! TTATGATGATAATGTGATTA+TGG - tig0019487:128751-128770 Msa1374450:CDS 20.0%
!!! TTTATTTTTTAACTGAACTC+TGG + tig0019487:127858-127877 None:intergenic 20.0%
!! TAAATAAATTGAAGTCAGAT+CGG - tig0019487:127874-127893 Msa1374450:CDS 20.0%
!! AAGAAAATACATAAAATTGG+TGG + tig0019487:127961-127980 None:intergenic 20.0%
!! TTGTCTTTACTTCATATATA+TGG - tig0019487:128169-128188 Msa1374450:intron 20.0%
!!! GTAATAAGCTTTGTATTTAA+TGG + tig0019487:128223-128242 None:intergenic 20.0%
!!! TTATGATGATAATGTGATTA+TGG - tig0019487:128751-128770 Msa1374450:CDS 20.0%
! AACAAGAATAACAAGAGAAA+TGG - tig0019487:128292-128311 Msa1374450:intron 25.0%
! ACAAGAATAACAAGAGAAAT+GGG - tig0019487:128293-128312 Msa1374450:intron 25.0%
!! TTATGATCGTTTTCAGTTTT+CGG - tig0019487:128706-128725 Msa1374450:CDS 25.0%
! AACAAGAATAACAAGAGAAA+TGG - tig0019487:128292-128311 Msa1374450:intron 25.0%
! ACAAGAATAACAAGAGAAAT+GGG - tig0019487:128293-128312 Msa1374450:intron 25.0%
!! TTATGATCGTTTTCAGTTTT+CGG - tig0019487:128706-128725 Msa1374450:CDS 25.0%
CATCATAATAGTGCAATTCA+AGG - tig0019487:127518-127537 Msa1374450:CDS 30.0%
TAATAGTGCAATTCAAGGAA+TGG - tig0019487:127523-127542 Msa1374450:CDS 30.0%
GCATAATTAGATGAAGAAGA+AGG + tig0019487:127614-127633 None:intergenic 30.0%
!! ATTTTCAGGGAAATTGAGTT+TGG + tig0019487:128537-128556 None:intergenic 30.0%
! TACGAAGTGTAACATTTTCA+GGG + tig0019487:128550-128569 None:intergenic 30.0%
! TTACGAAGTGTAACATTTTC+AGG + tig0019487:128551-128570 None:intergenic 30.0%
GTAATAGAAACAATTGAACC+CGG + tig0019487:128620-128639 None:intergenic 30.0%
! TATGATCGTTTTCAGTTTTC+GGG - tig0019487:128707-128726 Msa1374450:CDS 30.0%
TCATAAACATTCCTTACAGA+AGG + tig0019487:128737-128756 None:intergenic 30.0%
CATCATAATAGTGCAATTCA+AGG - tig0019487:127518-127537 Msa1374450:CDS 30.0%
TAATAGTGCAATTCAAGGAA+TGG - tig0019487:127523-127542 Msa1374450:CDS 30.0%
GCATAATTAGATGAAGAAGA+AGG + tig0019487:127614-127633 None:intergenic 30.0%
!! ATTTTCAGGGAAATTGAGTT+TGG + tig0019487:128537-128556 None:intergenic 30.0%
! TACGAAGTGTAACATTTTCA+GGG + tig0019487:128550-128569 None:intergenic 30.0%
! TTACGAAGTGTAACATTTTC+AGG + tig0019487:128551-128570 None:intergenic 30.0%
GTAATAGAAACAATTGAACC+CGG + tig0019487:128620-128639 None:intergenic 30.0%
! TATGATCGTTTTCAGTTTTC+GGG - tig0019487:128707-128726 Msa1374450:CDS 30.0%
TCATAAACATTCCTTACAGA+AGG + tig0019487:128737-128756 None:intergenic 30.0%
ATCATTTCAGCTGACAATGT+AGG + tig0019487:127395-127414 None:intergenic 35.0%
! AACTATATCAGCGTCACTTT+GGG + tig0019487:127498-127517 None:intergenic 35.0%
!! GACATATTGTTGGTGATGTT+TGG + tig0019487:127560-127579 None:intergenic 35.0%
AGAAGGAGAAGACATATTGT+TGG + tig0019487:127570-127589 None:intergenic 35.0%
GACAAAGATTGTGTTGTAGA+AGG + tig0019487:127587-127606 None:intergenic 35.0%
TTCTTCTCTCAAGAGAACTA+GGG - tig0019487:127640-127659 Msa1374450:CDS 35.0%
AGGGAAGATGATAGATTTGT+TGG - tig0019487:127659-127678 Msa1374450:CDS 35.0%
!! ATTTGGTGCTTACTTCTTGT+TGG + tig0019487:127722-127741 None:intergenic 35.0%
TAAATTGAAGTCAGATCGGA+TGG - tig0019487:127878-127897 Msa1374450:CDS 35.0%
TCAAACCATGTATAACCTTG+AGG - tig0019487:127917-127936 Msa1374450:CDS 35.0%
CAAACCATGTATAACCTTGA+GGG - tig0019487:127918-127937 Msa1374450:CDS 35.0%
AAACCATGTATAACCTTGAG+GGG - tig0019487:127919-127938 Msa1374450:CDS 35.0%
TTACATATATATGCCCCTCA+AGG + tig0019487:127935-127954 None:intergenic 35.0%
CAGAAAGTTCAAGCATGAAT+AGG - tig0019487:128264-128283 Msa1374450:intron 35.0%
ACAGAGAATGTAGTAAGAGA+AGG - tig0019487:128341-128360 Msa1374450:intron 35.0%
GAAGCAAAGAGAAAATACAG+AGG - tig0019487:128365-128384 Msa1374450:intron 35.0%
AAAGGTCTAGTATGAACAAC+AGG + tig0019487:128656-128675 None:intergenic 35.0%
TGTGATTATGGCTTCTTCTA+TGG - tig0019487:128763-128782 Msa1374450:CDS 35.0%
! TGCATTTGTTTCTTCTATGC+AGG - tig0019487:128844-128863 Msa1374450:CDS 35.0%
! GCATTTGTTTCTTCTATGCA+GGG - tig0019487:128845-128864 Msa1374450:CDS 35.0%
ATCATTTCAGCTGACAATGT+AGG + tig0019487:127395-127414 None:intergenic 35.0%
! AACTATATCAGCGTCACTTT+GGG + tig0019487:127498-127517 None:intergenic 35.0%
!! GACATATTGTTGGTGATGTT+TGG + tig0019487:127560-127579 None:intergenic 35.0%
AGAAGGAGAAGACATATTGT+TGG + tig0019487:127570-127589 None:intergenic 35.0%
GACAAAGATTGTGTTGTAGA+AGG + tig0019487:127587-127606 None:intergenic 35.0%
TTCTTCTCTCAAGAGAACTA+GGG - tig0019487:127640-127659 Msa1374450:CDS 35.0%
AGGGAAGATGATAGATTTGT+TGG - tig0019487:127659-127678 Msa1374450:CDS 35.0%
!! ATTTGGTGCTTACTTCTTGT+TGG + tig0019487:127722-127741 None:intergenic 35.0%
TAAATTGAAGTCAGATCGGA+TGG - tig0019487:127878-127897 Msa1374450:CDS 35.0%
TCAAACCATGTATAACCTTG+AGG - tig0019487:127917-127936 Msa1374450:CDS 35.0%
CAAACCATGTATAACCTTGA+GGG - tig0019487:127918-127937 Msa1374450:CDS 35.0%
AAACCATGTATAACCTTGAG+GGG - tig0019487:127919-127938 Msa1374450:CDS 35.0%
TTACATATATATGCCCCTCA+AGG + tig0019487:127935-127954 None:intergenic 35.0%
CAGAAAGTTCAAGCATGAAT+AGG - tig0019487:128264-128283 Msa1374450:intron 35.0%
ACAGAGAATGTAGTAAGAGA+AGG - tig0019487:128341-128360 Msa1374450:intron 35.0%
GAAGCAAAGAGAAAATACAG+AGG - tig0019487:128365-128384 Msa1374450:intron 35.0%
AAAGGTCTAGTATGAACAAC+AGG + tig0019487:128656-128675 None:intergenic 35.0%
TGTGATTATGGCTTCTTCTA+TGG - tig0019487:128763-128782 Msa1374450:CDS 35.0%
! TGCATTTGTTTCTTCTATGC+AGG - tig0019487:128844-128863 Msa1374450:CDS 35.0%
! GCATTTGTTTCTTCTATGCA+GGG - tig0019487:128845-128864 Msa1374450:CDS 35.0%
GTCAGCTGAAATGATCTTTC+CGG - tig0019487:127400-127419 Msa1374450:CDS 40.0%
TCAGCTGAAATGATCTTTCC+GGG - tig0019487:127401-127420 Msa1374450:CDS 40.0%
TGATCTTTCCGGGTTTGAAT+AGG - tig0019487:127411-127430 Msa1374450:CDS 40.0%
GATCTTTCCGGGTTTGAATA+GGG - tig0019487:127412-127431 Msa1374450:CDS 40.0%
TCTCTATCCCTATTCAAACC+CGG + tig0019487:127422-127441 None:intergenic 40.0%
GCTTTGACTCATATCGTTTC+TGG - tig0019487:127461-127480 Msa1374450:CDS 40.0%
GAACTATATCAGCGTCACTT+TGG + tig0019487:127499-127518 None:intergenic 40.0%
GTTCTTCTCTCAAGAGAACT+AGG - tig0019487:127639-127658 Msa1374450:CDS 40.0%
GTTGGCGATTTCAAATTCCT+CGG - tig0019487:127677-127696 Msa1374450:CDS 40.0%
TACTTCTTGTTGGCAAAGCA+GGG + tig0019487:127712-127731 None:intergenic 40.0%
TTACTTCTTGTTGGCAAAGC+AGG + tig0019487:127713-127732 None:intergenic 40.0%
TTCTGATTACCAAGTCGGTA+GGG + tig0019487:127792-127811 None:intergenic 40.0%
CGAACTTCTGATTACCAAGT+CGG + tig0019487:127797-127816 None:intergenic 40.0%
!! CGACTTGGTAATCAGAAGTT+CGG - tig0019487:127795-127814 Msa1374450:CDS 40.0%
ACAAAGACCATGGGGAAAAT+GGG - tig0019487:128394-128413 Msa1374450:intron 40.0%
!! CATACTCTTGCTGCTTTGAA+TGG + tig0019487:128437-128456 None:intergenic 40.0%
CATTCAAAGCAGCAAGAGTA+TGG - tig0019487:128435-128454 Msa1374450:intron 40.0%
! AAAGCAGCAAGAGTATGGTT+AGG - tig0019487:128440-128459 Msa1374450:intron 40.0%
CATTGAGTAGTAGTAGTAGC+TGG + tig0019487:128581-128600 None:intergenic 40.0%
CAGCTACTACTACTACTCAA+TGG - tig0019487:128579-128598 Msa1374450:CDS 40.0%
ATGGAACGTTTCGAATTCAC+CGG - tig0019487:128598-128617 Msa1374450:CDS 40.0%
TGCTGAGAAGAGTTAGGAAA+AGG + tig0019487:128674-128693 None:intergenic 40.0%
! TTTCGGGTATTCCTTCTGTA+AGG - tig0019487:128723-128742 Msa1374450:CDS 40.0%
GATGATGACAAAGAAGAAGC+TGG + tig0019487:128818-128837 None:intergenic 40.0%
! GTAGAAAAGTACGAGGAAAC+TGG + tig0019487:128878-128897 None:intergenic 40.0%
! CAACTGAGTAGAAAAGTACG+AGG + tig0019487:128885-128904 None:intergenic 40.0%
GTCAGCTGAAATGATCTTTC+CGG - tig0019487:127400-127419 Msa1374450:CDS 40.0%
TCAGCTGAAATGATCTTTCC+GGG - tig0019487:127401-127420 Msa1374450:CDS 40.0%
TGATCTTTCCGGGTTTGAAT+AGG - tig0019487:127411-127430 Msa1374450:CDS 40.0%
GATCTTTCCGGGTTTGAATA+GGG - tig0019487:127412-127431 Msa1374450:CDS 40.0%
TCTCTATCCCTATTCAAACC+CGG + tig0019487:127422-127441 None:intergenic 40.0%
GCTTTGACTCATATCGTTTC+TGG - tig0019487:127461-127480 Msa1374450:CDS 40.0%
GAACTATATCAGCGTCACTT+TGG + tig0019487:127499-127518 None:intergenic 40.0%
GTTCTTCTCTCAAGAGAACT+AGG - tig0019487:127639-127658 Msa1374450:CDS 40.0%
GTTGGCGATTTCAAATTCCT+CGG - tig0019487:127677-127696 Msa1374450:CDS 40.0%
TACTTCTTGTTGGCAAAGCA+GGG + tig0019487:127712-127731 None:intergenic 40.0%
TTACTTCTTGTTGGCAAAGC+AGG + tig0019487:127713-127732 None:intergenic 40.0%
TTCTGATTACCAAGTCGGTA+GGG + tig0019487:127792-127811 None:intergenic 40.0%
CGAACTTCTGATTACCAAGT+CGG + tig0019487:127797-127816 None:intergenic 40.0%
!! CGACTTGGTAATCAGAAGTT+CGG - tig0019487:127795-127814 Msa1374450:CDS 40.0%
ACAAAGACCATGGGGAAAAT+GGG - tig0019487:128394-128413 Msa1374450:intron 40.0%
!! CATACTCTTGCTGCTTTGAA+TGG + tig0019487:128437-128456 None:intergenic 40.0%
CATTCAAAGCAGCAAGAGTA+TGG - tig0019487:128435-128454 Msa1374450:intron 40.0%
! AAAGCAGCAAGAGTATGGTT+AGG - tig0019487:128440-128459 Msa1374450:intron 40.0%
CATTGAGTAGTAGTAGTAGC+TGG + tig0019487:128581-128600 None:intergenic 40.0%
CAGCTACTACTACTACTCAA+TGG - tig0019487:128579-128598 Msa1374450:CDS 40.0%
ATGGAACGTTTCGAATTCAC+CGG - tig0019487:128598-128617 Msa1374450:CDS 40.0%
TGCTGAGAAGAGTTAGGAAA+AGG + tig0019487:128674-128693 None:intergenic 40.0%
! TTTCGGGTATTCCTTCTGTA+AGG - tig0019487:128723-128742 Msa1374450:CDS 40.0%
GATGATGACAAAGAAGAAGC+TGG + tig0019487:128818-128837 None:intergenic 40.0%
! GTAGAAAAGTACGAGGAAAC+TGG + tig0019487:128878-128897 None:intergenic 40.0%
! CAACTGAGTAGAAAAGTACG+AGG + tig0019487:128885-128904 None:intergenic 40.0%
! ATATCAGCGTCACTTTGGGT+TGG + tig0019487:127494-127513 None:intergenic 45.0%
ACTTCTTGTTGGCAAAGCAG+GGG + tig0019487:127711-127730 None:intergenic 45.0%
ATTACCAAGTCGGTAGGGTA+AGG + tig0019487:127787-127806 None:intergenic 45.0%
CTTCTGATTACCAAGTCGGT+AGG + tig0019487:127793-127812 None:intergenic 45.0%
ATGCCCCTCAAGGTTATACA+TGG + tig0019487:127925-127944 None:intergenic 45.0%
AGGAGTGAGACAAAGACCAT+GGG - tig0019487:128385-128404 Msa1374450:intron 45.0%
GACAAAGACCATGGGGAAAA+TGG - tig0019487:128393-128412 Msa1374450:intron 45.0%
AGCTGCTTCAGCAGTTTCAA+AGG + tig0019487:128468-128487 None:intergenic 45.0%
! GAAGCTGCTCTTCGTTTTAG+AGG - tig0019487:128503-128522 Msa1374450:intron 45.0%
TAGTAGTAGTAGCTGGTGGA+GGG + tig0019487:128574-128593 None:intergenic 45.0%
TGAGTAGTAGTAGTAGCTGG+TGG + tig0019487:128578-128597 None:intergenic 45.0%
TGGAACGTTTCGAATTCACC+GGG - tig0019487:128599-128618 Msa1374450:CDS 45.0%
GTCGAATGCTGAGAAGAGTT+AGG + tig0019487:128680-128699 None:intergenic 45.0%
TTTCTACTCAGTTGCCACCT+TGG - tig0019487:128891-128910 Msa1374450:CDS 45.0%
CTATGATCCGAAGTTGACCA+AGG + tig0019487:128911-128930 None:intergenic 45.0%
! ATATCAGCGTCACTTTGGGT+TGG + tig0019487:127494-127513 None:intergenic 45.0%
ACTTCTTGTTGGCAAAGCAG+GGG + tig0019487:127711-127730 None:intergenic 45.0%
ATTACCAAGTCGGTAGGGTA+AGG + tig0019487:127787-127806 None:intergenic 45.0%
CTTCTGATTACCAAGTCGGT+AGG + tig0019487:127793-127812 None:intergenic 45.0%
ATGCCCCTCAAGGTTATACA+TGG + tig0019487:127925-127944 None:intergenic 45.0%
AGGAGTGAGACAAAGACCAT+GGG - tig0019487:128385-128404 Msa1374450:intron 45.0%
GACAAAGACCATGGGGAAAA+TGG - tig0019487:128393-128412 Msa1374450:intron 45.0%
AGCTGCTTCAGCAGTTTCAA+AGG + tig0019487:128468-128487 None:intergenic 45.0%
! GAAGCTGCTCTTCGTTTTAG+AGG - tig0019487:128503-128522 Msa1374450:intron 45.0%
TAGTAGTAGTAGCTGGTGGA+GGG + tig0019487:128574-128593 None:intergenic 45.0%
TGAGTAGTAGTAGTAGCTGG+TGG + tig0019487:128578-128597 None:intergenic 45.0%
TGGAACGTTTCGAATTCACC+GGG - tig0019487:128599-128618 Msa1374450:CDS 45.0%
GTCGAATGCTGAGAAGAGTT+AGG + tig0019487:128680-128699 None:intergenic 45.0%
TTTCTACTCAGTTGCCACCT+TGG - tig0019487:128891-128910 Msa1374450:CDS 45.0%
CTATGATCCGAAGTTGACCA+AGG + tig0019487:128911-128930 None:intergenic 45.0%
GGCGATTTCAAATTCCTCGG+TGG - tig0019487:127680-127699 Msa1374450:CDS 50.0%
!! TTAGCCTTACCCTACCGACT+TGG - tig0019487:127780-127799 Msa1374450:CDS 50.0%
GAGGAGTGAGACAAAGACCA+TGG - tig0019487:128384-128403 Msa1374450:intron 50.0%
GGAGTGAGACAAAGACCATG+GGG - tig0019487:128386-128405 Msa1374450:intron 50.0%
GTAGTAGTAGTAGCTGGTGG+AGG + tig0019487:128575-128594 None:intergenic 50.0%
GTTGCCACCTTGGTCAACTT+CGG - tig0019487:128901-128920 Msa1374450:CDS 50.0%
TGATCCGAAGTTGACCAAGG+TGG + tig0019487:128908-128927 None:intergenic 50.0%
GGCGATTTCAAATTCCTCGG+TGG - tig0019487:127680-127699 Msa1374450:CDS 50.0%
!! TTAGCCTTACCCTACCGACT+TGG - tig0019487:127780-127799 Msa1374450:CDS 50.0%
GAGGAGTGAGACAAAGACCA+TGG - tig0019487:128384-128403 Msa1374450:intron 50.0%
GGAGTGAGACAAAGACCATG+GGG - tig0019487:128386-128405 Msa1374450:intron 50.0%
GTAGTAGTAGTAGCTGGTGG+AGG + tig0019487:128575-128594 None:intergenic 50.0%
GTTGCCACCTTGGTCAACTT+CGG - tig0019487:128901-128920 Msa1374450:CDS 50.0%
TGATCCGAAGTTGACCAAGG+TGG + tig0019487:128908-128927 None:intergenic 50.0%
TCTTGTTGGCAAAGCAGGGG+AGG + tig0019487:127708-127727 None:intergenic 55.0%
! TCTGCTGCCCATTTTCCCCA+TGG + tig0019487:128404-128423 None:intergenic 55.0%
TCTTGTTGGCAAAGCAGGGG+AGG + tig0019487:127708-127727 None:intergenic 55.0%
! TCTGCTGCCCATTTTCCCCA+TGG + tig0019487:128404-128423 None:intergenic 55.0%
AAGCAGGGGAGGAACCACCG+AGG + tig0019487:127697-127716 None:intergenic 65.0%
AAGCAGGGGAGGAACCACCG+AGG + tig0019487:127697-127716 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0019487 gene 127326 128949 127326 ID=Msa1374450;Name=Msa1374450
tig0019487 mRNA 127326 128949 127326 ID=Msa1374450-mRNA-1;Parent=Msa1374450;Name=Msa1374450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|363
tig0019487 exon 128547 128949 128547 ID=Msa1374450-mRNA-1:exon:3948;Parent=Msa1374450-mRNA-1
tig0019487 exon 127326 128014 127326 ID=Msa1374450-mRNA-1:exon:3947;Parent=Msa1374450-mRNA-1
tig0019487 CDS 128547 128949 128547 ID=Msa1374450-mRNA-1:cds;Parent=Msa1374450-mRNA-1
tig0019487 CDS 127326 128014 127326 ID=Msa1374450-mRNA-1:cds;Parent=Msa1374450-mRNA-1
Gene Sequence

>Msa1374450

ATGTGTATGTTAAAGGTGGCGAATTCAAAAGACAAAGTTGTTATCAAAAGTGAATTCAATGATCATCCTACATTGTCAGCTGAAATGATCTTTCCGGGTTTGAATAGGGATAGAGAGATGTCTGCAATGATCTCAGCTTTGACTCATATCGTTTCTGGAGATGTTCCAACCCAAAGTGACGCTGATATAGTTCATCATAATAGTGCAATTCAAGGAATGGTTTCTTTTACACCAAACATCACCAACAATATGTCTTCTCCTTCTACAACACAATCTTTGTCTTCTCCTTCTTCTTCATCTAATTATGCTACTAGTTCTTCTCTCAAGAGAACTAGGGAAGATGATAGATTTGTTGGCGATTTCAAATTCCTCGGTGGTTCCTCCCCTGCTTTGCCAACAAGAATTGCAGAAAGTTCAAGCATGAATAGGACAGCAACAAGAATAACAAGAGAAATGGGAAATGCAGTGTATGAATATAGAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGCAAAGAGAAAATACAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACCTTTGAAACTGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCCAAACTCAATTTCCCTGAAAATGTTACACTTCGTAACCCTCCACCAGCTACTACTACTACTCAATGGAACGTTTCGAATTCACCGGGTTCAATTGTTTCTATTACAACTTCTACTGATCCTGTTGTTCATACTAGACCTTTTCCTAACTCTTCTCAGCATTCGACAAACTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTTCTGTAAGGAATGTTTATGATGATAATGTGATTATGGCTTCTTCTATGGCTTCTCATCTACAATCTTCGTCATCGTCGCCAGCTTCTTCTTTGTCATCATCTTCTTCTGCATTTGTTTCTTCTATGCAGGGCAATACTCCAGTTTCCTCGTACTTTTCTACTCAGTTGCCACCTTGGTCAACTTCGGATCATAGCTCTTCTCCGTCTAGATGA
Protein sequence

>Msa1374450

MCMLKVANSKDKVVIKSEFNDHPTLSAEMIFPGLNRDREMSAMISALTHIVSGDVPTQSDADIVHHNSAIQGMVSFTPNITNNMSSPSTTQSLSSPSSSSNYATSSSLKRTREDDRFVGDFKFLGGSSPALPTRIAESSSMNRTATRITREMGNAVYEYRRTENVVREGEAKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRNPPPATTTTQWNVSNSPGSIVSITTSTDPVVHTRPFPNSSQHSTNFYDRFQFSGIPSVRNVYDDNVIMASSMASHLQSSSSSPASSLSSSSSAFVSSMQGNTPVSSYFSTQLPPWSTSDHSSSPSR*