AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473540 MtrunA17_Chr3g0129421 91.193 352 21 3 1 347 1 347 0.0 561
Msa0473540 MtrunA17_Chr8g0383591 45.818 275 126 8 28 294 5 264 3.59e-64 206
Msa0473540 MtrunA17_Chr7g0221471 75.000 72 18 0 166 237 43 114 2.10e-32 119
Msa0473540 MtrunA17_Chr7g0221501 73.239 71 19 0 164 234 41 111 1.25e-31 117
Msa0473540 MtrunA17_Chr4g0044871 60.185 108 36 3 130 230 45 152 1.01e-29 114
Msa0473540 MtrunA17_Chr8g0375031 73.016 63 17 0 167 229 118 180 5.47e-29 112
Msa0473540 MtrunA17_Chr4g0044881 82.759 58 10 0 173 230 113 170 3.36e-28 110
Msa0473540 MtrunA17_Chr2g0295421 68.919 74 21 1 168 239 88 161 1.42e-27 108
Msa0473540 MtrunA17_Chr4g0044901 82.456 57 10 0 174 230 96 152 1.59e-27 108
Msa0473540 MtrunA17_Chr4g0044911 82.456 57 10 0 174 230 96 152 1.74e-27 108
Msa0473540 MtrunA17_Chr8g0344961 73.913 69 14 1 167 231 113 181 3.39e-27 110
Msa0473540 MtrunA17_Chr2g0282651 46.032 126 61 2 120 238 12 137 5.27e-27 107
Msa0473540 MtrunA17_Chr2g0334031 73.913 69 14 1 167 231 106 174 5.27e-27 109
Msa0473540 MtrunA17_Chr1g0195151 63.750 80 19 2 171 240 74 153 1.59e-25 104
Msa0473540 MtrunA17_Chr5g0396911 45.082 122 52 2 134 240 64 185 2.42e-25 103
Msa0473540 MtrunA17_Chr2g0316931 69.231 65 20 0 173 237 30 94 3.70e-25 101
Msa0473540 MtrunA17_Chr3g0131601 88.889 63 7 0 171 233 73 135 5.42e-25 102
Msa0473540 MtrunA17_Chr5g0438831 74.138 58 15 0 173 230 45 102 1.55e-24 101
Msa0473540 MtrunA17_Chr4g0055761 63.529 85 25 2 162 240 128 212 1.55e-24 100
Msa0473540 MtrunA17_Chr4g0055801 67.532 77 22 2 160 233 138 214 3.34e-24 100
Msa0473540 MtrunA17_Chr2g0283171 70.968 62 17 1 170 230 59 120 4.55e-24 96.7
Msa0473540 MtrunA17_Chr4g0055781 66.234 77 23 2 160 233 86 162 5.75e-24 99.0
Msa0473540 MtrunA17_Chr3g0099871 75.862 58 14 0 173 230 26 83 6.24e-24 98.2
Msa0473540 MtrunA17_Chr1g0158971 66.176 68 19 1 171 234 112 179 1.20e-23 100
Msa0473540 MtrunA17_Chr4g0046161 54.023 87 38 2 150 234 32 118 2.08e-23 94.0
Msa0473540 MtrunA17_Chr8g0335321 63.235 68 24 1 172 238 94 161 2.38e-23 96.3
Msa0473540 MtrunA17_Chr8g0335311 68.254 63 19 1 172 233 94 156 2.47e-23 95.9
Msa0473540 MtrunA17_Chr5g0438801 70.690 58 17 0 173 230 50 107 4.30e-23 97.4
Msa0473540 MtrunA17_Chr8g0335331 72.131 61 16 1 174 233 125 185 5.10e-23 95.1
Msa0473540 MtrunA17_Chr2g0297331 61.972 71 26 1 162 231 2 72 5.48e-23 93.2
Msa0473540 MtrunA17_Chr2g0283181 70.968 62 17 1 170 230 145 206 1.15e-22 96.3
Msa0473540 MtrunA17_Chr4g0063751 56.000 75 33 0 172 246 5 79 2.49e-22 93.6
Msa0473540 MtrunA17_Chr4g0002631 64.516 62 22 0 171 232 5 66 3.57e-22 92.8
Msa0473540 MtrunA17_Chr3g0126321 68.966 58 18 0 172 229 111 168 3.71e-22 95.9
Msa0473540 MtrunA17_Chr2g0333011 66.129 62 21 0 172 233 5 66 4.29e-22 92.0
Msa0473540 MtrunA17_Chr7g0250711 70.000 60 17 1 172 230 58 117 4.59e-22 92.8
Msa0473540 MtrunA17_Chr7g0250731 70.000 60 17 1 172 230 59 118 4.88e-22 92.8
Msa0473540 MtrunA17_Chr1g0196871 64.286 70 24 1 172 240 14 83 4.89e-22 89.4
Msa0473540 MtrunA17_Chr7g0250721 70.000 60 17 1 172 230 59 118 8.98e-22 92.0
Msa0473540 MtrunA17_Chr2g0282621 67.692 65 17 1 166 230 11 71 9.27e-22 90.9
Msa0473540 MtrunA17_Chr4g0003421 67.797 59 19 0 172 230 38 96 1.24e-21 92.4
Msa0473540 MtrunA17_Chr1g0184081 67.188 64 20 1 173 235 20 83 1.41e-21 89.7
Msa0473540 MtrunA17_Chr3g0137174 62.903 62 23 0 171 232 5 66 1.62e-21 90.9
Msa0473540 MtrunA17_Chr4g0026881 67.692 65 20 1 171 234 94 158 1.73e-21 92.0
Msa0473540 MtrunA17_Chr1g0170531 65.152 66 22 1 169 233 84 149 1.81e-21 91.7
Msa0473540 MtrunA17_Chr1g0186731 64.615 65 22 1 167 230 14 78 2.82e-21 89.0
Msa0473540 MtrunA17_Chr6g0461941 83.333 66 11 0 169 234 15 80 2.97e-21 90.5
Msa0473540 MtrunA17_Chr7g0232261 59.155 71 28 1 174 244 61 130 8.13e-21 90.1
Msa0473540 MtrunA17_Chr7g0275841 54.795 73 32 1 174 246 28 99 9.53e-21 88.2
Msa0473540 MtrunA17_Chr8g0367911 66.667 60 20 0 170 229 40 99 1.10e-20 90.9
Msa0473540 MtrunA17_Chr7g0261101 72.131 61 16 1 171 230 17 77 1.18e-20 87.0
Msa0473540 MtrunA17_Chr8g0334801 57.534 73 30 1 174 246 52 123 1.35e-20 88.6
Msa0473540 MtrunA17_Chr6g0486701 65.517 58 20 0 174 231 44 101 1.83e-20 88.6
Msa0473540 MtrunA17_Chr5g0425561 67.797 59 19 0 172 230 171 229 2.23e-20 91.3
Msa0473540 MtrunA17_Chr3g0140161 55.128 78 34 1 165 242 34 110 2.23e-20 87.8
Msa0473540 MtrunA17_Chr8g0387801 67.241 58 19 0 172 229 105 162 2.35e-20 90.5
Msa0473540 MtrunA17_Chr4g0026931 66.154 65 21 1 171 234 128 192 2.39e-20 89.7
Msa0473540 MtrunA17_Chr7g0257911 56.410 78 34 0 170 247 27 104 2.54e-20 89.7
Msa0473540 MtrunA17_Chr8g0390091 67.241 58 19 0 174 231 37 94 3.07e-20 88.6
Msa0473540 MtrunA17_Chr7g0261151 71.667 60 16 1 173 231 19 78 3.26e-20 85.9
Msa0473540 MtrunA17_Chr3g0115631 66.102 59 20 0 172 230 148 206 3.84e-20 90.1
Msa0473540 MtrunA17_Chr2g0323171 62.903 62 22 1 174 235 65 125 5.88e-20 86.7
Msa0473540 MtrunA17_Chr1g0196781 60.606 66 26 0 165 230 143 208 5.89e-20 89.4
Msa0473540 MtrunA17_Chr2g0331231 62.069 58 22 0 174 231 41 98 6.79e-20 86.7
Msa0473540 MtrunA17_Chr5g0412641 58.442 77 29 1 173 249 45 118 8.41e-20 89.4
Msa0473540 MtrunA17_Chr8g0340311 45.833 96 50 2 174 269 47 140 9.15e-20 86.3
Msa0473540 MtrunA17_Chr7g0253424 59.091 66 27 0 173 238 38 103 1.06e-19 87.8
Msa0473540 MtrunA17_Chr1g0201671 65.934 91 19 2 181 271 146 224 1.20e-19 89.0
Msa0473540 MtrunA17_Chr8g0382491 64.407 59 21 0 172 230 111 169 1.47e-19 87.4
Msa0473540 MtrunA17_Chr7g0261181 61.628 86 26 3 167 245 2 87 1.51e-19 83.6
Msa0473540 MtrunA17_Chr1g0186671 64.062 64 22 1 173 235 18 81 1.52e-19 84.0
Msa0473540 MtrunA17_Chr5g0401871 57.143 63 27 0 169 231 20 82 1.58e-19 85.1
Msa0473540 MtrunA17_Chr4g0023411 46.809 94 49 1 174 267 65 157 1.62e-19 85.5
Msa0473540 MtrunA17_Chr3g0134161 62.069 58 22 0 174 231 45 102 1.63e-19 84.7
Msa0473540 MtrunA17_Chr5g0432821 63.158 57 21 0 174 230 124 180 2.12e-19 87.0
Msa0473540 MtrunA17_Chr4g0055951 63.793 58 21 0 174 231 74 131 2.22e-19 86.7
Msa0473540 MtrunA17_Chr2g0324131 63.333 60 22 0 172 231 216 275 2.88e-19 88.6
Msa0473540 MtrunA17_Chr5g0437371 64.407 59 21 0 171 229 63 121 3.63e-19 87.4
Msa0473540 MtrunA17_Chr1g0153151 59.677 62 25 0 170 231 40 101 4.26e-19 84.0
Msa0473540 MtrunA17_Chr4g0017851 52.857 70 31 1 166 235 112 179 6.49e-19 86.3
Msa0473540 MtrunA17_Chr6g0461271 53.425 73 34 0 166 238 25 97 6.65e-19 86.3
Msa0473540 MtrunA17_Chr5g0399441 62.069 58 22 0 174 231 28 85 1.14e-18 82.8
Msa0473540 MtrunA17_Chr5g0437671 61.290 62 24 0 170 231 81 142 1.25e-18 86.7
Msa0473540 MtrunA17_Chr1g0183981 63.333 60 21 1 171 229 72 131 1.35e-18 83.6
Msa0473540 MtrunA17_Chr7g0217991 57.143 63 27 0 167 229 35 97 1.56e-18 86.7
Msa0473540 MtrunA17_Chr8g0346741 50.667 75 35 1 174 246 39 113 1.75e-18 82.0
Msa0473540 MtrunA17_Chr1g0184011 67.273 55 17 1 176 229 86 140 2.39e-18 82.8
Msa0473540 MtrunA17_Chr6g0473741 56.164 73 31 1 174 246 66 137 2.57e-18 82.8
Msa0473540 MtrunA17_Chr4g0066931 59.649 57 23 0 173 229 52 108 2.84e-18 84.7
Msa0473540 MtrunA17_Chr6g0453661 58.333 60 25 0 170 229 34 93 3.61e-18 85.1
Msa0473540 MtrunA17_Chr1g0184031 61.290 62 23 1 169 229 79 140 4.42e-18 82.0
Msa0473540 MtrunA17_Chr2g0286161 49.351 77 33 1 159 229 29 105 5.08e-18 83.6
Msa0473540 MtrunA17_Chr1g0184071 60.938 64 24 1 167 229 62 125 5.49e-18 80.5
Msa0473540 MtrunA17_Chr1g0170471 60.656 61 23 1 181 240 90 150 7.47e-18 80.1
Msa0473540 MtrunA17_Chr1g0186681 56.338 71 29 1 167 235 12 82 7.61e-18 79.0
Msa0473540 MtrunA17_Chr6g0464581 90.566 53 5 0 181 233 187 239 8.28e-18 84.0
Msa0473540 MtrunA17_Chr7g0252381 53.425 73 30 1 173 245 41 109 9.42e-18 82.4
Msa0473540 MtrunA17_Chr1g0184061 61.667 60 22 1 171 229 74 133 1.05e-17 80.9
Msa0473540 MtrunA17_Chr8g0378811 61.017 59 23 0 171 229 52 110 1.23e-17 81.6
Msa0473540 MtrunA17_Chr6g0473981 39.062 128 59 2 119 246 17 125 1.78e-17 80.9
Msa0473540 MtrunA17_Chr1g0183961 72.881 59 15 1 173 230 26 84 2.19e-17 78.2
Msa0473540 MtrunA17_Chr7g0265851 54.795 73 32 1 174 246 24 95 2.40e-17 79.7
Msa0473540 MtrunA17_Chr6g0473881 51.190 84 34 2 166 243 96 178 2.53e-17 81.6
Msa0473540 MtrunA17_Chr4g0062551 58.333 60 25 0 171 230 50 109 2.76e-17 77.8
Msa0473540 MtrunA17_Chr8g0345531 66.667 48 16 0 173 220 115 162 2.80e-17 82.0
Msa0473540 MtrunA17_Chr1g0189941 58.929 56 23 0 174 229 24 79 3.32e-17 78.2
Msa0473540 MtrunA17_Chr8g0350701 50.704 71 35 0 172 242 25 95 3.52e-17 81.3
Msa0473540 MtrunA17_Chr4g0062161 58.333 60 25 0 171 230 50 109 4.98e-17 79.0
Msa0473540 MtrunA17_Chr6g0473861 54.795 73 32 1 174 246 63 134 5.17e-17 80.1
Msa0473540 MtrunA17_Chr6g0473781 53.425 73 33 1 174 246 57 128 5.87e-17 79.0
Msa0473540 MtrunA17_Chr4g0042761 53.030 66 31 0 164 229 38 103 6.57e-17 80.5
Msa0473540 MtrunA17_Chr6g0474001 38.281 128 60 2 119 246 17 125 7.40e-17 79.7
Msa0473540 MtrunA17_Chr6g0473941 53.425 73 33 1 174 246 33 104 9.35e-17 78.2
Msa0473540 MtrunA17_Chr6g0473961 53.425 73 33 1 174 246 54 125 9.39e-17 78.2
Msa0473540 MtrunA17_Chr5g0396191 67.241 58 19 0 174 231 11 68 1.02e-16 77.4
Msa0473540 MtrunA17_Chr1g0203861 54.286 70 31 1 174 243 44 112 1.10e-16 77.8
Msa0473540 MtrunA17_Chr6g0473971 52.055 73 34 1 174 246 54 125 1.35e-16 78.6
Msa0473540 MtrunA17_Chr1g0150671 54.237 59 27 0 172 230 44 102 1.59e-16 79.0
Msa0473540 MtrunA17_Chr1g0183931 55.294 85 37 1 164 247 91 175 1.73e-16 78.2
Msa0473540 MtrunA17_Chr1g0150691 54.237 59 27 0 172 230 20 78 1.77e-16 77.4
Msa0473540 MtrunA17_Chr1g0150631 54.237 59 27 0 172 230 36 94 2.76e-16 77.4
Msa0473540 MtrunA17_Chr1g0150661 52.542 59 28 0 172 230 33 91 2.90e-16 77.0
Msa0473540 MtrunA17_Chr2g0301191 52.239 67 26 1 174 240 19 79 2.91e-16 77.0
Msa0473540 MtrunA17_Chr8g0345551 66.667 48 16 0 174 221 117 164 3.07e-16 79.0
Msa0473540 MtrunA17_Chr3g0136551 46.154 65 35 0 167 231 58 122 9.68e-16 76.6
Msa0473540 MtrunA17_Chr2g0301171 50.746 67 27 1 174 240 19 79 1.13e-15 74.7
Msa0473540 MtrunA17_Chr1g0155751 62.121 66 22 1 174 239 39 101 1.19e-15 76.3
Msa0473540 MtrunA17_Chr6g0473931 50.685 73 35 1 174 246 33 104 1.45e-15 74.3
Msa0473540 MtrunA17_Chr1g0200931 56.140 57 24 1 174 229 23 79 1.49e-15 72.8
Msa0473540 MtrunA17_Chr1g0149331 66.667 60 20 0 171 230 4 63 1.85e-15 74.3
Msa0473540 MtrunA17_Chr1g0209891 54.098 61 24 1 173 229 53 113 2.56e-15 75.9
Msa0473540 MtrunA17_Chr7g0261201 67.692 65 20 1 171 234 95 159 3.05e-15 74.3
Msa0473540 MtrunA17_Chr7g0243431 58.730 63 19 1 174 229 78 140 4.74e-15 76.3
Msa0473540 MtrunA17_Chr3g0083501 60.784 51 20 0 181 231 2 52 4.90e-15 69.7
Msa0473540 MtrunA17_Chr6g0486711 67.241 58 19 0 174 231 49 106 6.17e-15 73.6
Msa0473540 MtrunA17_Chr6g0473771 50.000 74 36 1 174 247 43 115 8.17e-15 70.1
Msa0473540 MtrunA17_Chr7g0261171 55.952 84 36 1 171 253 82 165 8.78e-15 73.2
Msa0473540 MtrunA17_Chr2g0301181 44.304 79 38 1 162 240 7 79 9.08e-15 72.8
Msa0473540 MtrunA17_Chr3g0137831 67.797 59 19 0 172 230 6 64 9.90e-15 72.4
Msa0473540 MtrunA17_Chr5g0438841 55.172 58 26 0 173 230 15 72 1.14e-14 71.2
Msa0473540 MtrunA17_Chr5g0396171 50.000 58 29 0 176 233 26 83 1.48e-14 68.9
Msa0473540 MtrunA17_Chr1g0205961 58.333 48 20 0 173 220 114 161 1.76e-14 73.9
Msa0473540 MtrunA17_Chr3g0142081 65.517 58 20 0 174 231 39 96 1.88e-14 72.0
Msa0473540 MtrunA17_Chr4g0057241 50.588 85 32 3 174 258 15 89 2.38e-14 70.5
Msa0473540 MtrunA17_Chr1g0146191 66.667 57 19 0 174 230 47 103 3.13e-14 72.0
Msa0473540 MtrunA17_Chr5g0423811 73.171 41 11 0 173 213 87 127 3.46e-14 72.4
Msa0473540 MtrunA17_Chr5g0396301 51.613 62 28 1 172 231 16 77 2.87e-13 67.0
Msa0473540 MtrunA17_Chr1g0186741 61.538 65 24 1 171 234 70 134 2.96e-13 68.2
Msa0473540 MtrunA17_Chr1g0167781 66.102 59 19 1 172 229 80 138 3.50e-13 68.2
Msa0473540 MtrunA17_Chr3g0136541 50.000 56 28 0 176 231 42 97 4.36e-13 68.2
Msa0473540 MtrunA17_Chr2g0321071 51.562 64 29 2 174 235 47 110 8.63e-13 67.0
Msa0473540 MtrunA17_Chr7g0225131 52.632 57 24 1 174 230 29 82 9.30e-13 63.5
Msa0473540 MtrunA17_Chr5g0396181 47.945 73 37 1 174 246 21 92 1.12e-12 66.2
Msa0473540 MtrunA17_Chr4g0002771 66.102 59 20 0 171 229 74 132 3.86e-12 65.1
Msa0473540 MtrunA17_Chr5g0396741 64.706 68 21 1 171 238 114 178 4.29e-12 66.2
Msa0473540 MtrunA17_Chr5g0424051 49.438 89 38 2 169 256 91 173 9.31e-12 65.1
Msa0473540 MtrunA17_Chr6g0473791 55.102 49 22 0 174 222 57 105 1.87e-11 61.6
Msa0473540 MtrunA17_Chr5g0422501 49.275 69 29 2 165 229 94 160 2.04e-11 64.7
Msa0473540 MtrunA17_Chr1g0198661 57.143 56 22 1 173 228 63 116 2.30e-11 64.7
Msa0473540 MtrunA17_Chr5g0398091 41.772 79 40 1 174 246 54 132 4.96e-11 62.0
Msa0473540 MtrunA17_Chr3g0108241 53.226 62 28 1 174 234 115 176 8.49e-11 62.0
Msa0473540 MtrunA17_Chr5g0398081 48.438 64 27 1 174 231 49 112 8.99e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473540 AT5G61890.1 84.615 65 10 0 171 235 87 151 2.64e-33 124
Msa0473540 AT5G13330.1 69.767 86 19 2 171 256 36 114 1.25e-32 121
Msa0473540 AT2G33710.1 72.727 77 17 1 171 243 67 143 7.22e-32 119
Msa0473540 AT2G33710.2 72.727 77 17 1 171 243 67 143 8.48e-32 120
Msa0473540 AT5G64750.1 59.048 105 33 1 181 275 192 296 1.09e-30 120
Msa0473540 AT2G47520.1 73.134 67 16 1 166 230 40 106 9.40e-29 110
Msa0473540 AT5G50080.2 44.162 197 60 5 39 235 1 147 1.25e-27 108
Msa0473540 AT5G50080.1 61.404 114 33 2 122 235 36 138 1.97e-27 108
Msa0473540 AT1G43160.1 89.231 65 7 0 169 233 56 120 7.49e-27 105
Msa0473540 AT5G07310.1 84.615 65 10 0 171 235 89 153 2.24e-26 106
Msa0473540 AT1G72360.1 62.162 74 28 0 173 246 24 97 4.08e-26 104
Msa0473540 AT1G72360.3 58.537 82 32 1 167 246 65 146 4.95e-26 105
Msa0473540 AT1G72360.2 58.537 82 32 1 167 246 67 148 5.05e-26 105
Msa0473540 AT4G11140.1 62.667 75 21 1 172 246 85 152 1.79e-25 104
Msa0473540 AT1G28370.2 71.875 64 17 1 167 230 52 114 2.19e-25 102
Msa0473540 AT1G28370.1 71.875 64 17 1 167 230 14 76 2.77e-25 100
Msa0473540 AT3G16770.1 74.603 63 14 1 171 231 74 136 4.67e-25 102
Msa0473540 AT5G47220.1 65.789 76 25 1 172 246 115 190 5.53e-25 102
Msa0473540 AT1G03800.1 72.414 58 16 0 173 230 52 109 1.82e-24 100
Msa0473540 AT5G47230.1 70.423 71 20 1 169 238 151 221 2.01e-24 101
Msa0473540 AT3G15210.1 71.429 63 18 0 173 235 24 86 2.08e-24 100
Msa0473540 AT4G17500.1 70.000 70 20 1 172 240 146 215 2.84e-24 100
Msa0473540 AT4G17490.1 66.667 75 24 1 165 238 128 202 9.60e-24 99.8
Msa0473540 AT5G44210.1 51.515 99 42 1 174 272 33 125 1.15e-23 97.4
Msa0473540 AT5G51190.1 66.197 71 22 2 161 230 60 129 1.50e-23 97.4
Msa0473540 AT4G27950.1 51.923 104 38 3 168 268 112 206 2.88e-23 99.4
Msa0473540 AT2G22200.1 58.228 79 32 1 169 246 66 144 3.82e-23 97.4
Msa0473540 AT2G44840.1 74.576 59 14 1 173 230 91 149 9.65e-23 95.5
Msa0473540 AT3G20310.1 50.505 99 44 2 173 270 26 120 1.14e-22 95.9
Msa0473540 AT1G15360.1 67.213 61 20 0 172 232 5 65 1.61e-22 94.4
Msa0473540 AT1G15360.2 67.213 61 20 0 172 232 5 65 1.61e-22 94.4
Msa0473540 AT1G50640.1 72.414 58 16 0 173 230 27 84 1.86e-22 94.7
Msa0473540 AT5G61600.1 66.667 63 20 1 172 233 86 148 3.17e-22 94.4
Msa0473540 AT5G53290.1 61.972 71 27 0 159 229 110 180 3.77e-22 96.3
Msa0473540 AT1G28360.1 67.742 62 20 0 174 235 12 73 4.46e-22 92.8
Msa0473540 AT4G23750.2 65.000 60 21 0 170 229 118 177 9.50e-22 95.1
Msa0473540 AT4G23750.1 65.000 60 21 0 170 229 118 177 9.50e-22 95.1
Msa0473540 AT4G28140.1 63.077 65 24 0 170 234 139 203 1.97e-21 93.2
Msa0473540 AT5G43410.1 67.188 64 20 1 173 235 14 77 1.97e-21 89.4
Msa0473540 AT4G13620.1 61.111 72 28 0 160 231 218 289 2.20e-21 94.7
Msa0473540 AT2G46310.1 61.111 72 22 1 173 244 98 163 2.65e-21 93.2
Msa0473540 AT5G65130.1 64.516 62 22 0 172 233 109 170 2.68e-21 92.8
Msa0473540 AT1G71450.1 65.517 58 20 0 174 231 24 81 2.80e-21 90.5
Msa0473540 AT5G65130.2 64.516 62 22 0 172 233 111 172 2.86e-21 92.8
Msa0473540 AT3G23230.1 71.186 59 16 1 173 230 19 77 2.96e-21 89.0
Msa0473540 AT1G12980.1 39.474 152 73 5 161 312 44 176 2.97e-21 93.6
Msa0473540 AT4G39780.1 64.516 62 22 0 170 231 89 150 3.49e-21 92.4
Msa0473540 AT3G57600.1 59.459 74 28 1 173 246 27 98 4.07e-21 92.0
Msa0473540 AT3G60490.1 57.534 73 31 0 159 231 56 128 4.42e-21 91.7
Msa0473540 AT4G06746.1 58.730 63 26 0 171 233 33 95 5.63e-21 88.6
Msa0473540 AT5G25390.2 64.407 59 21 0 172 230 5 63 5.80e-21 89.7
Msa0473540 AT5G07580.1 61.644 73 26 2 159 230 96 167 6.28e-21 90.1
Msa0473540 AT1G22190.1 65.000 60 21 0 172 231 81 140 9.42e-21 90.9
Msa0473540 AT5G25190.1 61.290 62 24 0 171 232 5 66 1.18e-20 88.6
Msa0473540 AT1G36060.1 66.102 59 20 0 172 230 141 199 1.74e-20 91.3
Msa0473540 AT2G35700.1 59.420 69 27 1 174 242 45 112 1.75e-20 88.6
Msa0473540 AT3G61630.1 45.833 120 40 4 115 229 61 160 2.38e-20 90.9
Msa0473540 AT2G20880.1 64.516 62 22 0 170 231 183 244 2.59e-20 90.9
Msa0473540 AT1G78080.1 66.102 59 20 0 172 230 150 208 4.19e-20 90.5
Msa0473540 AT3G50260.1 36.029 136 81 2 171 302 18 151 5.12e-20 85.9
Msa0473540 AT3G16280.2 59.155 71 28 1 174 244 79 148 6.65e-20 88.2
Msa0473540 AT1G75490.1 55.844 77 27 2 174 245 42 116 7.30e-20 87.0
Msa0473540 AT3G16280.1 59.155 71 28 1 174 244 61 130 7.78e-20 87.8
Msa0473540 AT4G32800.1 57.576 66 28 0 166 231 11 76 8.23e-20 87.4
Msa0473540 AT2G25820.1 56.164 73 31 1 174 246 26 97 8.40e-20 87.4
Msa0473540 AT4G34410.1 82.456 57 10 0 174 230 136 192 9.42e-20 88.2
Msa0473540 AT4G36900.1 62.069 58 22 0 174 231 30 87 1.37e-19 86.3
Msa0473540 AT1G01250.1 54.930 71 31 1 174 244 45 114 1.38e-19 85.9
Msa0473540 AT4G16750.1 50.000 84 41 1 160 243 26 108 1.90e-19 85.1
Msa0473540 AT2G23340.1 62.069 58 22 0 174 231 28 85 2.06e-19 85.1
Msa0473540 AT4G18450.1 70.000 60 16 2 172 229 108 167 2.82e-19 87.4
Msa0473540 AT2G40340.2 58.333 72 29 1 174 245 14 84 2.98e-19 87.0
Msa0473540 AT2G40340.5 58.333 72 29 1 174 245 14 84 2.98e-19 87.0
Msa0473540 AT2G40340.4 58.333 72 29 1 174 245 14 84 2.98e-19 87.0
Msa0473540 AT5G67190.1 61.667 60 23 0 172 231 19 78 3.16e-19 84.7
Msa0473540 AT3G11020.1 65.000 60 21 0 174 233 78 137 3.69e-19 87.4
Msa0473540 AT5G11590.1 65.517 58 20 0 174 231 51 108 3.75e-19 85.9
Msa0473540 AT2G44940.1 50.562 89 35 2 168 256 94 173 6.14e-19 86.3
Msa0473540 AT3G23240.1 62.903 62 22 1 169 229 77 138 7.84e-19 84.3
Msa0473540 AT5G25390.1 62.712 59 19 1 172 230 5 60 8.90e-19 83.6
Msa0473540 AT1G46768.1 46.591 88 44 1 147 231 1 88 9.37e-19 82.4
Msa0473540 AT1G46768.2 46.591 88 44 1 147 231 1 88 9.37e-19 82.4
Msa0473540 AT5G05410.2 47.525 101 46 4 174 272 79 174 9.49e-19 85.9
Msa0473540 AT5G19790.1 64.407 59 21 0 171 229 19 77 1.00e-18 85.1
Msa0473540 AT1G19210.1 58.333 60 25 0 173 232 11 70 1.04e-18 83.2
Msa0473540 AT1G24590.1 66.667 57 19 0 173 229 57 113 1.08e-18 85.9
Msa0473540 AT5G05410.1 47.525 101 46 4 174 272 79 174 1.17e-18 86.3
Msa0473540 AT2G40340.6 58.333 72 29 1 174 245 79 149 1.21e-18 86.3
Msa0473540 AT1G46768.3 46.591 88 44 1 147 231 1 88 1.21e-18 82.0
Msa0473540 AT2G40340.1 58.333 72 29 1 174 245 72 142 1.36e-18 86.3
Msa0473540 AT2G40340.3 58.333 72 29 1 174 245 72 142 1.41e-18 85.5
Msa0473540 AT2G31230.1 59.701 67 26 1 169 234 81 147 2.55e-18 83.6
Msa0473540 AT1G12890.1 52.439 82 33 2 160 239 11 88 2.58e-18 83.2
Msa0473540 AT5G13910.1 47.500 80 38 1 166 245 12 87 3.70e-18 82.4
Msa0473540 AT1G74930.1 47.436 78 35 1 161 232 2 79 4.79e-18 81.6
Msa0473540 AT1G21910.1 59.649 57 23 0 174 230 50 106 5.06e-18 82.4
Msa0473540 AT4G25470.1 52.055 73 35 0 174 246 51 123 5.08e-18 82.0
Msa0473540 AT5G25810.1 62.069 58 22 0 174 231 36 93 6.31e-18 82.0
Msa0473540 AT4G25490.1 60.606 66 25 1 174 238 48 113 7.86e-18 81.6
Msa0473540 AT5G18450.1 62.500 56 21 0 174 229 34 89 9.68e-18 83.2
Msa0473540 AT4G25480.1 54.286 70 32 0 174 243 51 120 1.18e-17 81.3
Msa0473540 AT1G22985.1 62.903 62 20 1 171 229 72 133 1.59e-17 79.3
Msa0473540 AT5G18560.1 61.404 57 22 0 173 229 54 110 1.66e-17 83.2
Msa0473540 AT5G21960.1 56.250 64 28 0 169 232 2 65 1.70e-17 80.9
Msa0473540 AT1G53910.3 77.049 61 14 0 171 231 120 180 2.03e-17 82.8
Msa0473540 AT1G53910.1 77.049 61 14 0 171 231 122 182 2.07e-17 82.8
Msa0473540 AT1G53910.2 77.049 61 14 0 171 231 122 182 2.07e-17 82.8
Msa0473540 AT3G14230.3 55.102 98 39 1 171 263 120 217 2.62e-17 82.8
Msa0473540 AT3G14230.1 55.102 98 39 1 171 263 125 222 2.67e-17 82.8
Msa0473540 AT3G14230.2 55.102 98 39 1 171 263 121 218 2.69e-17 82.8
Msa0473540 AT4G31060.1 52.459 61 29 0 172 232 25 85 8.22e-17 78.2
Msa0473540 AT5G51990.1 59.091 66 26 1 174 238 54 119 1.33e-16 78.6
Msa0473540 AT1G53170.1 73.684 57 15 0 173 229 30 86 1.72e-16 77.0
Msa0473540 AT1G28160.1 63.158 57 21 0 173 229 38 94 1.77e-16 78.6
Msa0473540 AT2G36450.1 59.677 62 24 1 174 234 15 76 2.16e-16 77.0
Msa0473540 AT1G68550.1 66.000 50 17 0 171 220 110 159 2.37e-16 79.3
Msa0473540 AT1G68550.2 66.000 50 17 0 171 220 110 159 2.37e-16 79.3
Msa0473540 AT5G67000.1 53.968 63 29 0 166 228 113 175 2.80e-16 76.6
Msa0473540 AT2G40350.2 57.895 57 24 0 174 230 74 130 3.28e-16 75.9
Msa0473540 AT5G11190.1 71.186 59 17 0 172 230 5 63 3.60e-16 76.3
Msa0473540 AT2G40350.1 57.895 57 24 0 174 230 67 123 4.42e-16 75.1
Msa0473540 AT3G23220.1 63.768 69 24 1 173 240 13 81 7.35e-16 74.3
Msa0473540 AT1G63030.2 39.640 111 48 2 133 243 7 98 8.76e-16 75.1
Msa0473540 AT1G63030.1 39.640 111 48 2 133 243 7 98 8.76e-16 75.1
Msa0473540 AT1G71130.1 57.812 64 22 1 171 229 76 139 1.40e-15 73.9
Msa0473540 AT5G61590.1 68.254 63 19 1 169 230 102 164 3.38e-15 73.9
Msa0473540 AT1G22810.1 35.507 138 74 4 168 299 8 136 5.30e-15 72.0
Msa0473540 AT1G77200.1 59.155 71 28 1 174 244 43 112 7.03e-15 73.9
Msa0473540 AT1G04370.1 67.188 64 20 1 173 235 19 82 1.21e-14 70.5
Msa0473540 AT1G06160.1 65.625 64 21 1 172 234 80 143 4.22e-14 71.6
Msa0473540 AT1G33760.1 63.333 60 22 0 174 233 20 79 5.31e-14 70.1
Msa0473540 AT2G38340.1 39.815 108 53 3 173 268 69 176 6.88e-14 71.2
Msa0473540 AT2G40220.1 65.000 60 21 0 170 229 51 110 2.37e-13 70.5
Msa0473540 AT1G12610.1 53.571 56 26 0 174 229 30 85 3.25e-13 68.6
Msa0473540 AT1G49120.1 38.043 92 50 1 174 258 87 178 7.49e-13 68.9
Msa0473540 AT1G64380.1 60.274 73 26 1 166 238 128 197 1.06e-12 68.6
Msa0473540 AT3G25890.1 64.444 45 16 0 176 220 133 177 1.24e-12 68.6
Msa0473540 AT3G25890.2 64.444 45 16 0 176 220 133 177 1.24e-12 68.6
Msa0473540 AT1G77640.1 58.209 67 27 1 172 238 41 106 2.33e-12 66.6
Msa0473540 AT1G71520.1 45.455 66 32 1 173 234 13 78 5.78e-12 63.2
Msa0473540 AT1G68840.2 56.140 57 23 1 173 229 64 118 1.10e-11 65.9
Msa0473540 AT1G68840.1 56.140 57 23 1 173 229 64 118 1.10e-11 65.9
Msa0473540 AT1G80580.1 53.846 78 27 1 161 229 94 171 5.85e-11 62.8

Find 66 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGACTCATATCGTTTC+TGG 0.134577 3_3:-76234352 Msa0473540:CDS
GACAAAGACCATGGGGAAAA+TGG 0.294498 3_3:-76233412 Msa0473540:CDS
TTATGATGATAATGTGATTA+TGG 0.294940 3_3:-76233054 Msa0473540:CDS
ATTGTCTGAAATGATCTTTC+CGG 0.298774 3_3:-76234413 Msa0473540:CDS
TGCATTTGTTTCTTCTATGC+AGG 0.323066 3_3:-76232973 Msa0473540:CDS
AACAAGAATAACAAGAGAAA+TGG 0.338558 3_3:-76233513 Msa0473540:CDS
TGATCTTTCCGGGTTTGAAT+AGG 0.341446 3_3:-76234402 Msa0473540:CDS
GACAAAGATTGTGTTGTAGA+AGG 0.344837 3_3:+76234229 None:intergenic
CATACTCTTGCTGCTTTGAA+TGG 0.348828 3_3:+76233371 None:intergenic
TTGTCTGAAATGATCTTTCC+GGG 0.359049 3_3:-76234412 Msa0473540:CDS
CATTCAAAGCAGCAAGAGTA+TGG 0.359272 3_3:-76233370 Msa0473540:CDS
GATCTTTCCGGGTTTGAATA+GGG 0.363685 3_3:-76234401 Msa0473540:CDS
AACTATATCAGCGTCACTTT+GGG 0.369074 3_3:+76234318 None:intergenic
GTAGAAAAGTACGAGGAAAC+TGG 0.377693 3_3:+76232942 None:intergenic
TTACTTGTTGTTGGCAAAGC+AGG 0.402927 3_3:+76234103 None:intergenic
AGGGAAGATGATAGATTTGT+TGG 0.411621 3_3:-76234154 Msa0473540:CDS
ATTTGGTGCTTACTTGTTGT+TGG 0.413356 3_3:+76234094 None:intergenic
GACATATTGTTGGTGATGTT+TGG 0.418592 3_3:+76234256 None:intergenic
GAACTATATCAGCGTCACTT+TGG 0.425440 3_3:+76234317 None:intergenic
CAGAAAGTTCAAGCATGAAT+AGG 0.431072 3_3:-76233541 Msa0473540:CDS
GTCGAATGCTGAGAAGAGTT+AGG 0.441356 3_3:+76233128 None:intergenic
GTTCTTCTCTCAAGAGAACT+AGG 0.443989 3_3:-76234174 Msa0473540:CDS
AAAGGTCTAGTATGAACAAC+AGG 0.456920 3_3:+76233152 None:intergenic
ACAAGAATAACAAGAGAAAT+GGG 0.461167 3_3:-76233512 Msa0473540:CDS
ACAAAGACCATGGGGAAAAT+GGG 0.467232 3_3:-76233411 Msa0473540:CDS
TTTCTACTCAGTTGCCACCT+TGG 0.468709 3_3:-76232926 Msa0473540:CDS
CATCATAATAGTGCAATTCA+AGG 0.473295 3_3:-76234295 Msa0473540:CDS
GCATTTGTTTCTTCTATGCA+GGG 0.489243 3_3:-76232972 Msa0473540:CDS
TGCTGAGAAGAGTTAGGAAA+AGG 0.497086 3_3:+76233134 None:intergenic
GTTGCCACCTTGGTCAACTT+CGG 0.500889 3_3:-76232916 Msa0473540:CDS
TACTTGTTGTTGGCAAAGCA+GGG 0.501488 3_3:+76234104 None:intergenic
AGCTGCTTCAGCTGTTTCAA+AGG 0.503311 3_3:+76233340 None:intergenic
GTAGTAGTAGTAGCTGGTGG+AGG 0.503347 3_3:+76233233 None:intergenic
ATGGAACGTTTCGAATTCAC+CGG 0.511700 3_3:-76233207 Msa0473540:CDS
AAAGCAGCAAGAGTATGGTT+AGG 0.512639 3_3:-76233365 Msa0473540:CDS
AGAAGGAGAAGACATATTGT+TGG 0.517884 3_3:+76234246 None:intergenic
ACAGAGAATGTAGTAAGAGA+AGG 0.524432 3_3:-76233464 Msa0473540:CDS
GCATAATTAGATGAAGAAGA+AGG 0.527566 3_3:+76234202 None:intergenic
TAATAGTGCAATTCAAGGAA+TGG 0.533500 3_3:-76234290 Msa0473540:CDS
CATTGAGTAGTAGTAGTAGC+TGG 0.538997 3_3:+76233227 None:intergenic
CAGCTACTACTACTACTCAA+TGG 0.541524 3_3:-76233226 Msa0473540:CDS
ATATCAGCGTCACTTTGGGT+TGG 0.542704 3_3:+76234322 None:intergenic
GTTGGCGATTTCAAATTCCT+CGG 0.544131 3_3:-76234136 Msa0473540:CDS
TAGTAGTAGTAGCTGGTGGA+GGG 0.544536 3_3:+76233234 None:intergenic
TTGAAAATTGATCATCTAGA+CGG 0.545243 3_3:+76232879 None:intergenic
AAGATCATTTCAGACAATGT+AGG 0.559223 3_3:+76234418 None:intergenic
GATGATGACAAAGAAGAAGC+TGG 0.563016 3_3:+76233002 None:intergenic
TCATAAACATTCCTTGCAGA+AGG 0.570205 3_3:+76233071 None:intergenic
TTACATGTGTATGTTAAAGG+TGG 0.575019 3_3:-76234488 None:intergenic
TTCTTCTCTCAAGAGAACTA+GGG 0.579919 3_3:-76234173 Msa0473540:CDS
AGGAGTGAGACAAAGACCAT+GGG 0.591805 3_3:-76233420 Msa0473540:CDS
TGTTGTTGGCAAAGCAGGGG+AGG 0.597101 3_3:+76234108 None:intergenic
ACTTGTTGTTGGCAAAGCAG+GGG 0.605264 3_3:+76234105 None:intergenic
TCTCTATCCCTATTCAAACC+CGG 0.612602 3_3:+76234394 None:intergenic
TTTCGGGTATTCCTTCTGCA+AGG 0.616262 3_3:-76233082 Msa0473540:CDS
GGCGATTTCAAATTCCTCGG+TGG 0.618201 3_3:-76234133 Msa0473540:CDS
GAGGAGTGAGACAAAGACCA+TGG 0.634731 3_3:-76233421 Msa0473540:CDS
TGGAACGTTTCGAATTCACC+GGG 0.636608 3_3:-76233206 Msa0473540:CDS
TGAGTAGTAGTAGTAGCTGG+TGG 0.652788 3_3:+76233230 None:intergenic
GAAGCAAAGAGAAAATACAG+AGG 0.659331 3_3:-76233440 Msa0473540:CDS
CTATGATCCGAAGTTGACCA+AGG 0.684304 3_3:+76232909 None:intergenic
GTAATAGAAACAATTGAACC+CGG 0.689937 3_3:+76233188 None:intergenic
TGATCCGAAGTTGACCAAGG+TGG 0.715416 3_3:+76232912 None:intergenic
CAACTGAGTAGAAAAGTACG+AGG 0.723485 3_3:+76232935 None:intergenic
GGAGTGAGACAAAGACCATG+GGG 0.727396 3_3:-76233419 Msa0473540:CDS
AAGCAGGGGAGGAACCACCG+AGG 0.764284 3_3:+76234119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAAAATACATAAAAT+TGG + chr3_3:76233529-76233548 None:intergenic 10.0%
!! TTAAAGAAAATACATAAAAT+TGG + chr3_3:76233529-76233548 None:intergenic 10.0%
!! AAAAAAAAATTTGAAGAAAG+AGG + chr3_3:76233317-76233336 None:intergenic 15.0%
!!! TTTATTTTTTAACTGAACTT+TGG + chr3_3:76233423-76233442 None:intergenic 15.0%
!! AGTTAAATGTAATTATATGT+TGG + chr3_3:76233696-76233715 None:intergenic 15.0%
!!! ATATATGGTTTGTATATTTA+AGG - chr3_3:76233753-76233772 Msa0473540:intron 15.0%
!!! ATAATAAGCTTTGTATTTAA+TGG + chr3_3:76233792-76233811 None:intergenic 15.0%
!! AAAAAAAAATTTGAAGAAAG+AGG + chr3_3:76233317-76233336 None:intergenic 15.0%
!!! TTTATTTTTTAACTGAACTT+TGG + chr3_3:76233423-76233442 None:intergenic 15.0%
!! AGTTAAATGTAATTATATGT+TGG + chr3_3:76233696-76233715 None:intergenic 15.0%
!!! ATATATGGTTTGTATATTTA+AGG - chr3_3:76233753-76233772 Msa0473540:intron 15.0%
!!! ATAATAAGCTTTGTATTTAA+TGG + chr3_3:76233792-76233811 None:intergenic 15.0%
!! AAGAGGAGAAATATTTAATT+TGG + chr3_3:76233300-76233319 None:intergenic 20.0%
!! TAAATAAATTGAAGTCAGAT+CGG - chr3_3:76233439-76233458 Msa0473540:CDS 20.0%
!! AAGAAAATACATAAAATTGG+TGG + chr3_3:76233526-76233545 None:intergenic 20.0%
!! TAATGTAAGTAGTATAACTT+AGG - chr3_3:76233620-76233639 Msa0473540:intron 20.0%
!! TTGTCTTTACTTCATATATA+TGG - chr3_3:76233738-76233757 Msa0473540:intron 20.0%
!!! TTATGATGATAATGTGATTA+TGG - chr3_3:76234320-76234339 Msa0473540:CDS 20.0%
!! AAGAGGAGAAATATTTAATT+TGG + chr3_3:76233300-76233319 None:intergenic 20.0%
!! TAAATAAATTGAAGTCAGAT+CGG - chr3_3:76233439-76233458 Msa0473540:CDS 20.0%
!! AAGAAAATACATAAAATTGG+TGG + chr3_3:76233526-76233545 None:intergenic 20.0%
!! TAATGTAAGTAGTATAACTT+AGG - chr3_3:76233620-76233639 Msa0473540:intron 20.0%
!! TTGTCTTTACTTCATATATA+TGG - chr3_3:76233738-76233757 Msa0473540:intron 20.0%
!!! TTATGATGATAATGTGATTA+TGG - chr3_3:76234320-76234339 Msa0473540:CDS 20.0%
! AACAAGAATAACAAGAGAAA+TGG - chr3_3:76233861-76233880 Msa0473540:intron 25.0%
! ACAAGAATAACAAGAGAAAT+GGG - chr3_3:76233862-76233881 Msa0473540:intron 25.0%
!! TTATGATCGTTTTCAGTTTT+CGG - chr3_3:76234275-76234294 Msa0473540:CDS 25.0%
! AACAAGAATAACAAGAGAAA+TGG - chr3_3:76233861-76233880 Msa0473540:intron 25.0%
! ACAAGAATAACAAGAGAAAT+GGG - chr3_3:76233862-76233881 Msa0473540:intron 25.0%
!! TTATGATCGTTTTCAGTTTT+CGG - chr3_3:76234275-76234294 Msa0473540:CDS 25.0%
AAGATCATTTCAGACAATGT+AGG + chr3_3:76232959-76232978 None:intergenic 30.0%
! ATTGTCTGAAATGATCTTTC+CGG - chr3_3:76232961-76232980 Msa0473540:CDS 30.0%
CATCATAATAGTGCAATTCA+AGG - chr3_3:76233079-76233098 Msa0473540:CDS 30.0%
TAATAGTGCAATTCAAGGAA+TGG - chr3_3:76233084-76233103 Msa0473540:CDS 30.0%
GCATAATTAGATGAAGAAGA+AGG + chr3_3:76233175-76233194 None:intergenic 30.0%
!! ATTTTCAGGGAAATTGAGTT+TGG + chr3_3:76234106-76234125 None:intergenic 30.0%
! TACGAAGTGTAACATTTTCA+GGG + chr3_3:76234119-76234138 None:intergenic 30.0%
! TTACGAAGTGTAACATTTTC+AGG + chr3_3:76234120-76234139 None:intergenic 30.0%
GTAATAGAAACAATTGAACC+CGG + chr3_3:76234189-76234208 None:intergenic 30.0%
! TATGATCGTTTTCAGTTTTC+GGG - chr3_3:76234276-76234295 Msa0473540:CDS 30.0%
AAGATCATTTCAGACAATGT+AGG + chr3_3:76232959-76232978 None:intergenic 30.0%
! ATTGTCTGAAATGATCTTTC+CGG - chr3_3:76232961-76232980 Msa0473540:CDS 30.0%
CATCATAATAGTGCAATTCA+AGG - chr3_3:76233079-76233098 Msa0473540:CDS 30.0%
TAATAGTGCAATTCAAGGAA+TGG - chr3_3:76233084-76233103 Msa0473540:CDS 30.0%
GCATAATTAGATGAAGAAGA+AGG + chr3_3:76233175-76233194 None:intergenic 30.0%
!! ATTTTCAGGGAAATTGAGTT+TGG + chr3_3:76234106-76234125 None:intergenic 30.0%
! TACGAAGTGTAACATTTTCA+GGG + chr3_3:76234119-76234138 None:intergenic 30.0%
! TTACGAAGTGTAACATTTTC+AGG + chr3_3:76234120-76234139 None:intergenic 30.0%
GTAATAGAAACAATTGAACC+CGG + chr3_3:76234189-76234208 None:intergenic 30.0%
! TATGATCGTTTTCAGTTTTC+GGG - chr3_3:76234276-76234295 Msa0473540:CDS 30.0%
! TTGTCTGAAATGATCTTTCC+GGG - chr3_3:76232962-76232981 Msa0473540:CDS 35.0%
! AACTATATCAGCGTCACTTT+GGG + chr3_3:76233059-76233078 None:intergenic 35.0%
!! GACATATTGTTGGTGATGTT+TGG + chr3_3:76233121-76233140 None:intergenic 35.0%
AGAAGGAGAAGACATATTGT+TGG + chr3_3:76233131-76233150 None:intergenic 35.0%
GACAAAGATTGTGTTGTAGA+AGG + chr3_3:76233148-76233167 None:intergenic 35.0%
TTCTTCTCTCAAGAGAACTA+GGG - chr3_3:76233201-76233220 Msa0473540:CDS 35.0%
AGGGAAGATGATAGATTTGT+TGG - chr3_3:76233220-76233239 Msa0473540:CDS 35.0%
!! ATTTGGTGCTTACTTGTTGT+TGG + chr3_3:76233283-76233302 None:intergenic 35.0%
TAAATTGAAGTCAGATCGGA+TGG - chr3_3:76233443-76233462 Msa0473540:CDS 35.0%
TCAAACCATGTATAACCTTG+AGG - chr3_3:76233482-76233501 Msa0473540:CDS 35.0%
CAAACCATGTATAACCTTGA+GGG - chr3_3:76233483-76233502 Msa0473540:CDS 35.0%
AAACCATGTATAACCTTGAG+GGG - chr3_3:76233484-76233503 Msa0473540:CDS 35.0%
TTACATATATATGCCCCTCA+AGG + chr3_3:76233500-76233519 None:intergenic 35.0%
CAGAAAGTTCAAGCATGAAT+AGG - chr3_3:76233833-76233852 Msa0473540:intron 35.0%
ACAGAGAATGTAGTAAGAGA+AGG - chr3_3:76233910-76233929 Msa0473540:intron 35.0%
GAAGCAAAGAGAAAATACAG+AGG - chr3_3:76233934-76233953 Msa0473540:intron 35.0%
AAAGGTCTAGTATGAACAAC+AGG + chr3_3:76234225-76234244 None:intergenic 35.0%
TCATAAACATTCCTTGCAGA+AGG + chr3_3:76234306-76234325 None:intergenic 35.0%
! TGCATTTGTTTCTTCTATGC+AGG - chr3_3:76234401-76234420 Msa0473540:CDS 35.0%
! GCATTTGTTTCTTCTATGCA+GGG - chr3_3:76234402-76234421 Msa0473540:CDS 35.0%
! TTGTCTGAAATGATCTTTCC+GGG - chr3_3:76232962-76232981 Msa0473540:CDS 35.0%
! AACTATATCAGCGTCACTTT+GGG + chr3_3:76233059-76233078 None:intergenic 35.0%
!! GACATATTGTTGGTGATGTT+TGG + chr3_3:76233121-76233140 None:intergenic 35.0%
AGAAGGAGAAGACATATTGT+TGG + chr3_3:76233131-76233150 None:intergenic 35.0%
GACAAAGATTGTGTTGTAGA+AGG + chr3_3:76233148-76233167 None:intergenic 35.0%
TTCTTCTCTCAAGAGAACTA+GGG - chr3_3:76233201-76233220 Msa0473540:CDS 35.0%
AGGGAAGATGATAGATTTGT+TGG - chr3_3:76233220-76233239 Msa0473540:CDS 35.0%
!! ATTTGGTGCTTACTTGTTGT+TGG + chr3_3:76233283-76233302 None:intergenic 35.0%
TAAATTGAAGTCAGATCGGA+TGG - chr3_3:76233443-76233462 Msa0473540:CDS 35.0%
TCAAACCATGTATAACCTTG+AGG - chr3_3:76233482-76233501 Msa0473540:CDS 35.0%
CAAACCATGTATAACCTTGA+GGG - chr3_3:76233483-76233502 Msa0473540:CDS 35.0%
AAACCATGTATAACCTTGAG+GGG - chr3_3:76233484-76233503 Msa0473540:CDS 35.0%
TTACATATATATGCCCCTCA+AGG + chr3_3:76233500-76233519 None:intergenic 35.0%
CAGAAAGTTCAAGCATGAAT+AGG - chr3_3:76233833-76233852 Msa0473540:intron 35.0%
ACAGAGAATGTAGTAAGAGA+AGG - chr3_3:76233910-76233929 Msa0473540:intron 35.0%
GAAGCAAAGAGAAAATACAG+AGG - chr3_3:76233934-76233953 Msa0473540:intron 35.0%
AAAGGTCTAGTATGAACAAC+AGG + chr3_3:76234225-76234244 None:intergenic 35.0%
TCATAAACATTCCTTGCAGA+AGG + chr3_3:76234306-76234325 None:intergenic 35.0%
! TGCATTTGTTTCTTCTATGC+AGG - chr3_3:76234401-76234420 Msa0473540:CDS 35.0%
! GCATTTGTTTCTTCTATGCA+GGG - chr3_3:76234402-76234421 Msa0473540:CDS 35.0%
TGATCTTTCCGGGTTTGAAT+AGG - chr3_3:76232972-76232991 Msa0473540:CDS 40.0%
GATCTTTCCGGGTTTGAATA+GGG - chr3_3:76232973-76232992 Msa0473540:CDS 40.0%
TCTCTATCCCTATTCAAACC+CGG + chr3_3:76232983-76233002 None:intergenic 40.0%
GCTTTGACTCATATCGTTTC+TGG - chr3_3:76233022-76233041 Msa0473540:CDS 40.0%
GAACTATATCAGCGTCACTT+TGG + chr3_3:76233060-76233079 None:intergenic 40.0%
GTTCTTCTCTCAAGAGAACT+AGG - chr3_3:76233200-76233219 Msa0473540:CDS 40.0%
GTTGGCGATTTCAAATTCCT+CGG - chr3_3:76233238-76233257 Msa0473540:CDS 40.0%
!! TACTTGTTGTTGGCAAAGCA+GGG + chr3_3:76233273-76233292 None:intergenic 40.0%
!! TTACTTGTTGTTGGCAAAGC+AGG + chr3_3:76233274-76233293 None:intergenic 40.0%
TTCTGATTACCAAGTCGGTA+GGG + chr3_3:76233357-76233376 None:intergenic 40.0%
CGAACTTCTGATTACCAAGT+CGG + chr3_3:76233362-76233381 None:intergenic 40.0%
!! CGACTTGGTAATCAGAAGTT+CGG - chr3_3:76233360-76233379 Msa0473540:CDS 40.0%
ACAAAGACCATGGGGAAAAT+GGG - chr3_3:76233963-76233982 Msa0473540:intron 40.0%
!! CATACTCTTGCTGCTTTGAA+TGG + chr3_3:76234006-76234025 None:intergenic 40.0%
CATTCAAAGCAGCAAGAGTA+TGG - chr3_3:76234004-76234023 Msa0473540:intron 40.0%
! AAAGCAGCAAGAGTATGGTT+AGG - chr3_3:76234009-76234028 Msa0473540:intron 40.0%
CATTGAGTAGTAGTAGTAGC+TGG + chr3_3:76234150-76234169 None:intergenic 40.0%
CAGCTACTACTACTACTCAA+TGG - chr3_3:76234148-76234167 Msa0473540:CDS 40.0%
ATGGAACGTTTCGAATTCAC+CGG - chr3_3:76234167-76234186 Msa0473540:CDS 40.0%
TGCTGAGAAGAGTTAGGAAA+AGG + chr3_3:76234243-76234262 None:intergenic 40.0%
GATGATGACAAAGAAGAAGC+TGG + chr3_3:76234375-76234394 None:intergenic 40.0%
! GTAGAAAAGTACGAGGAAAC+TGG + chr3_3:76234435-76234454 None:intergenic 40.0%
! CAACTGAGTAGAAAAGTACG+AGG + chr3_3:76234442-76234461 None:intergenic 40.0%
TGATCTTTCCGGGTTTGAAT+AGG - chr3_3:76232972-76232991 Msa0473540:CDS 40.0%
GATCTTTCCGGGTTTGAATA+GGG - chr3_3:76232973-76232992 Msa0473540:CDS 40.0%
TCTCTATCCCTATTCAAACC+CGG + chr3_3:76232983-76233002 None:intergenic 40.0%
GCTTTGACTCATATCGTTTC+TGG - chr3_3:76233022-76233041 Msa0473540:CDS 40.0%
GAACTATATCAGCGTCACTT+TGG + chr3_3:76233060-76233079 None:intergenic 40.0%
GTTCTTCTCTCAAGAGAACT+AGG - chr3_3:76233200-76233219 Msa0473540:CDS 40.0%
GTTGGCGATTTCAAATTCCT+CGG - chr3_3:76233238-76233257 Msa0473540:CDS 40.0%
!! TACTTGTTGTTGGCAAAGCA+GGG + chr3_3:76233273-76233292 None:intergenic 40.0%
!! TTACTTGTTGTTGGCAAAGC+AGG + chr3_3:76233274-76233293 None:intergenic 40.0%
TTCTGATTACCAAGTCGGTA+GGG + chr3_3:76233357-76233376 None:intergenic 40.0%
CGAACTTCTGATTACCAAGT+CGG + chr3_3:76233362-76233381 None:intergenic 40.0%
!! CGACTTGGTAATCAGAAGTT+CGG - chr3_3:76233360-76233379 Msa0473540:CDS 40.0%
ACAAAGACCATGGGGAAAAT+GGG - chr3_3:76233963-76233982 Msa0473540:intron 40.0%
!! CATACTCTTGCTGCTTTGAA+TGG + chr3_3:76234006-76234025 None:intergenic 40.0%
CATTCAAAGCAGCAAGAGTA+TGG - chr3_3:76234004-76234023 Msa0473540:intron 40.0%
! AAAGCAGCAAGAGTATGGTT+AGG - chr3_3:76234009-76234028 Msa0473540:intron 40.0%
CATTGAGTAGTAGTAGTAGC+TGG + chr3_3:76234150-76234169 None:intergenic 40.0%
CAGCTACTACTACTACTCAA+TGG - chr3_3:76234148-76234167 Msa0473540:CDS 40.0%
ATGGAACGTTTCGAATTCAC+CGG - chr3_3:76234167-76234186 Msa0473540:CDS 40.0%
TGCTGAGAAGAGTTAGGAAA+AGG + chr3_3:76234243-76234262 None:intergenic 40.0%
GATGATGACAAAGAAGAAGC+TGG + chr3_3:76234375-76234394 None:intergenic 40.0%
! GTAGAAAAGTACGAGGAAAC+TGG + chr3_3:76234435-76234454 None:intergenic 40.0%
! CAACTGAGTAGAAAAGTACG+AGG + chr3_3:76234442-76234461 None:intergenic 40.0%
! ATATCAGCGTCACTTTGGGT+TGG + chr3_3:76233055-76233074 None:intergenic 45.0%
!! ACTTGTTGTTGGCAAAGCAG+GGG + chr3_3:76233272-76233291 None:intergenic 45.0%
ATTACCAAGTCGGTAGGGTA+AGG + chr3_3:76233352-76233371 None:intergenic 45.0%
CTTCTGATTACCAAGTCGGT+AGG + chr3_3:76233358-76233377 None:intergenic 45.0%
ATGCCCCTCAAGGTTATACA+TGG + chr3_3:76233490-76233509 None:intergenic 45.0%
AGGAGTGAGACAAAGACCAT+GGG - chr3_3:76233954-76233973 Msa0473540:intron 45.0%
GACAAAGACCATGGGGAAAA+TGG - chr3_3:76233962-76233981 Msa0473540:intron 45.0%
! AGCTGCTTCAGCTGTTTCAA+AGG + chr3_3:76234037-76234056 None:intergenic 45.0%
! GAAGCTGCTCTTCGTTTTAG+AGG - chr3_3:76234072-76234091 Msa0473540:intron 45.0%
TAGTAGTAGTAGCTGGTGGA+GGG + chr3_3:76234143-76234162 None:intergenic 45.0%
TGAGTAGTAGTAGTAGCTGG+TGG + chr3_3:76234147-76234166 None:intergenic 45.0%
TGGAACGTTTCGAATTCACC+GGG - chr3_3:76234168-76234187 Msa0473540:CDS 45.0%
GTCGAATGCTGAGAAGAGTT+AGG + chr3_3:76234249-76234268 None:intergenic 45.0%
! TTTCGGGTATTCCTTCTGCA+AGG - chr3_3:76234292-76234311 Msa0473540:CDS 45.0%
TTTCTACTCAGTTGCCACCT+TGG - chr3_3:76234448-76234467 Msa0473540:CDS 45.0%
CTATGATCCGAAGTTGACCA+AGG + chr3_3:76234468-76234487 None:intergenic 45.0%
! ATATCAGCGTCACTTTGGGT+TGG + chr3_3:76233055-76233074 None:intergenic 45.0%
!! ACTTGTTGTTGGCAAAGCAG+GGG + chr3_3:76233272-76233291 None:intergenic 45.0%
ATTACCAAGTCGGTAGGGTA+AGG + chr3_3:76233352-76233371 None:intergenic 45.0%
CTTCTGATTACCAAGTCGGT+AGG + chr3_3:76233358-76233377 None:intergenic 45.0%
ATGCCCCTCAAGGTTATACA+TGG + chr3_3:76233490-76233509 None:intergenic 45.0%
AGGAGTGAGACAAAGACCAT+GGG - chr3_3:76233954-76233973 Msa0473540:intron 45.0%
GACAAAGACCATGGGGAAAA+TGG - chr3_3:76233962-76233981 Msa0473540:intron 45.0%
! AGCTGCTTCAGCTGTTTCAA+AGG + chr3_3:76234037-76234056 None:intergenic 45.0%
! GAAGCTGCTCTTCGTTTTAG+AGG - chr3_3:76234072-76234091 Msa0473540:intron 45.0%
TAGTAGTAGTAGCTGGTGGA+GGG + chr3_3:76234143-76234162 None:intergenic 45.0%
TGAGTAGTAGTAGTAGCTGG+TGG + chr3_3:76234147-76234166 None:intergenic 45.0%
TGGAACGTTTCGAATTCACC+GGG - chr3_3:76234168-76234187 Msa0473540:CDS 45.0%
GTCGAATGCTGAGAAGAGTT+AGG + chr3_3:76234249-76234268 None:intergenic 45.0%
! TTTCGGGTATTCCTTCTGCA+AGG - chr3_3:76234292-76234311 Msa0473540:CDS 45.0%
TTTCTACTCAGTTGCCACCT+TGG - chr3_3:76234448-76234467 Msa0473540:CDS 45.0%
CTATGATCCGAAGTTGACCA+AGG + chr3_3:76234468-76234487 None:intergenic 45.0%
GGCGATTTCAAATTCCTCGG+TGG - chr3_3:76233241-76233260 Msa0473540:CDS 50.0%
!! TTAGCCTTACCCTACCGACT+TGG - chr3_3:76233345-76233364 Msa0473540:CDS 50.0%
GAGGAGTGAGACAAAGACCA+TGG - chr3_3:76233953-76233972 Msa0473540:intron 50.0%
GGAGTGAGACAAAGACCATG+GGG - chr3_3:76233955-76233974 Msa0473540:intron 50.0%
GTAGTAGTAGTAGCTGGTGG+AGG + chr3_3:76234144-76234163 None:intergenic 50.0%
GTTGCCACCTTGGTCAACTT+CGG - chr3_3:76234458-76234477 Msa0473540:CDS 50.0%
TGATCCGAAGTTGACCAAGG+TGG + chr3_3:76234465-76234484 None:intergenic 50.0%
GGCGATTTCAAATTCCTCGG+TGG - chr3_3:76233241-76233260 Msa0473540:CDS 50.0%
!! TTAGCCTTACCCTACCGACT+TGG - chr3_3:76233345-76233364 Msa0473540:CDS 50.0%
GAGGAGTGAGACAAAGACCA+TGG - chr3_3:76233953-76233972 Msa0473540:intron 50.0%
GGAGTGAGACAAAGACCATG+GGG - chr3_3:76233955-76233974 Msa0473540:intron 50.0%
GTAGTAGTAGTAGCTGGTGG+AGG + chr3_3:76234144-76234163 None:intergenic 50.0%
GTTGCCACCTTGGTCAACTT+CGG - chr3_3:76234458-76234477 Msa0473540:CDS 50.0%
TGATCCGAAGTTGACCAAGG+TGG + chr3_3:76234465-76234484 None:intergenic 50.0%
TGTTGTTGGCAAAGCAGGGG+AGG + chr3_3:76233269-76233288 None:intergenic 55.0%
! TCTGCTGCCCATTTTCCCCA+TGG + chr3_3:76233973-76233992 None:intergenic 55.0%
TGTTGTTGGCAAAGCAGGGG+AGG + chr3_3:76233269-76233288 None:intergenic 55.0%
! TCTGCTGCCCATTTTCCCCA+TGG + chr3_3:76233973-76233992 None:intergenic 55.0%
AAGCAGGGGAGGAACCACCG+AGG + chr3_3:76233258-76233277 None:intergenic 65.0%
AAGCAGGGGAGGAACCACCG+AGG + chr3_3:76233258-76233277 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76232890 76234506 76232890 ID=Msa0473540;Name=Msa0473540
chr3_3 mRNA 76232890 76234506 76232890 ID=Msa0473540-mRNA-1;Parent=Msa0473540;Name=Msa0473540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|358
chr3_3 exon 76234107 76234506 76234107 ID=Msa0473540-mRNA-1:exon:19894;Parent=Msa0473540-mRNA-1
chr3_3 exon 76232890 76233566 76232890 ID=Msa0473540-mRNA-1:exon:19893;Parent=Msa0473540-mRNA-1
chr3_3 CDS 76234107 76234506 76234107 ID=Msa0473540-mRNA-1:cds;Parent=Msa0473540-mRNA-1
chr3_3 CDS 76232890 76233566 76232890 ID=Msa0473540-mRNA-1:cds;Parent=Msa0473540-mRNA-1
Gene Sequence

>Msa0473540

ATGTGTATGTTAAAGGTGGCGAATTCAAAAGACAAAGTTGTTATCAAAAGTGAATTCAATGATCATCCTACATTGTCTGAAATGATCTTTCCGGGTTTGAATAGGGATAGAGAGATGTCTGCAATGATCTCAGCTTTGACTCATATCGTTTCTGGAGATGTTCCAACCCAAAGTGACGCTGATATAGTTCATCATAATAGTGCAATTCAAGGAATGGTTTCTTTTACACCAAACATCACCAACAATATGTCTTCTCCTTCTACAACACAATCTTTGTCTTCTCCTTCTTCTTCATCTAATTATGCTACTAGTTCTTCTCTCAAGAGAACTAGGGAAGATGATAGATTTGTTGGCGATTTCAAATTCCTCGGTGGTTCCTCCCCTGCTTTGCCAACAACAATTGCAGAAAGTTCAAGCATGAATAGGACAGCAACAAGAATAACAAGAGAAATGGGAAATGCAGTGTATGAATATAGAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGCAAAGAGAAAATACAGAGGAGTGAGACAAAGACCATGGGGAAAATGGGCAGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACCTTTGAAACAGCTGAAGCAGCTGCTAGAGCATACGATGAAGCTGCTCTTCGTTTTAGAGGCAACAAAGCCAAACTCAATTTCCCTGAAAATGTTACACTTCGTAACCCTCCACCAGCTACTACTACTACTCAATGGAACGTTTCGAATTCACCGGGTTCAATTGTTTCTATTACAACTTCTACTGATCCTGTTGTTCATACTAGACCTTTTCCTAACTCTTCTCAGCATTCGACAAACTTTTATGATCGTTTTCAGTTTTCGGGTATTCCTTCTGCAAGGAATGTTTATGATGATAATGTGATTATGGCTTCTCATCTACAATCTTCATCATCGTCGCCAGCTTCTTCTTTGTCATCATCTTCTTCTGCATTTGTTTCTTCTATGCAGGGCAATACTCCAGTTTCCTCGTACTTTTCTACTCAGTTGCCACCTTGGTCAACTTCGGATCATAGCTCTTCTCCGTCTAGATGA
Protein sequence

>Msa0473540

MCMLKVANSKDKVVIKSEFNDHPTLSEMIFPGLNRDREMSAMISALTHIVSGDVPTQSDADIVHHNSAIQGMVSFTPNITNNMSSPSTTQSLSSPSSSSNYATSSSLKRTREDDRFVGDFKFLGGSSPALPTTIAESSSMNRTATRITREMGNAVYEYRRTENVVREGEAKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRNPPPATTTTQWNVSNSPGSIVSITTSTDPVVHTRPFPNSSQHSTNFYDRFQFSGIPSARNVYDDNVIMASHLQSSSSSPASSLSSSSSAFVSSMQGNTPVSSYFSTQLPPWSTSDHSSSPSR*