Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422560 | G7IAP8 | 90.909 | 132 | 8 | 3 | 1 | 129 | 1 | 131 | 5.21e-49 | 172 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1422560 | Msa1423130 | 0.869419 | 3.141037e-66 | -8.615850e-47 |
| Msa0181060 | Msa1422560 | 0.887677 | 1.156243e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1422560 | MtrunA17_Chr1g0203711 | 90.909 | 132 | 8 | 3 | 1 | 129 | 1 | 131 | 1.00e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATGTTTGTTGCGTTCTA+AGG | 0.274169 | tig0025415:-72592 | None:intergenic |
| AAACCCATGGTTCAACTCAT+TGG | 0.368169 | tig0025415:-72402 | None:intergenic |
| ATGCCGCTGCTGAGGTGGTC+AGG | 0.392389 | tig0025415:+72670 | Msa1422560:CDS |
| AGCGCGTGGATTACGGTTGC+CGG | 0.406392 | tig0025415:+72728 | Msa1422560:CDS |
| GTAACAAAGCGCGTGGATTA+CGG | 0.414216 | tig0025415:+72721 | Msa1422560:CDS |
| TGCGCGTGGGGTTGAAACTT+TGG | 0.427504 | tig0025415:+72188 | Msa1422560:five_prime_UTR |
| TTAACGGCGGCGATCTCCTC+CGG | 0.427865 | tig0025415:-72747 | None:intergenic |
| TGGTTGAAGGCGGAGGGTGG+TGG | 0.430256 | tig0025415:-72552 | None:intergenic |
| AGGGAGTGGAGGAATCAAAT+TGG | 0.431194 | tig0025415:-72572 | None:intergenic |
| CTCACAAGCAGTGGCGTGGC+GGG | 0.431799 | tig0025415:+72693 | Msa1422560:CDS |
| AACAAGAGACGATGGAGCTT+CGG | 0.454907 | tig0025415:+72501 | Msa1422560:CDS |
| TGCAGCACATGCCGCTGCTG+AGG | 0.458833 | tig0025415:+72662 | Msa1422560:CDS |
| TTTGTTGCGTTCTAAGGGAG+TGG | 0.472253 | tig0025415:-72586 | None:intergenic |
| ATCAAATTGGTTGAAGGCGG+AGG | 0.474549 | tig0025415:-72559 | None:intergenic |
| AGAGTGTCGGAGACTAGAAT+TGG | 0.480995 | tig0025415:-72234 | None:intergenic |
| AGCACATGCCGCTGCTGAGG+TGG | 0.486201 | tig0025415:+72665 | Msa1422560:CDS |
| GAAGAAGAAGTGGGAACACT+TGG | 0.494828 | tig0025415:-72283 | None:intergenic |
| TGCTGCTGTTGCCGCAGCAA+CGG | 0.494936 | tig0025415:-72619 | None:intergenic |
| GGTTCATCCTCCGATGGATC+GGG | 0.520293 | tig0025415:+72456 | Msa1422560:CDS |
| GCATGTTTGTTGCGTTCTAA+GGG | 0.520488 | tig0025415:-72591 | None:intergenic |
| GGGTTCATCCTCCGATGGAT+CGG | 0.522185 | tig0025415:+72455 | Msa1422560:CDS |
| GGAGGAATCAAATTGGTTGA+AGG | 0.530076 | tig0025415:-72565 | None:intergenic |
| GATCCATCGGAGGATGAACC+CGG | 0.542081 | tig0025415:-72453 | None:intergenic |
| ACATGCAATCGCCGTTGCTG+CGG | 0.564729 | tig0025415:+72608 | Msa1422560:CDS |
| ATGCCCTTGTATTTGCGCGT+GGG | 0.565226 | tig0025415:+72175 | None:intergenic |
| AAAAGTGGTTGAAGAAGAAG+TGG | 0.565354 | tig0025415:-72293 | None:intergenic |
| GGCATGTGCTGCAGCTAGAG+CGG | 0.567126 | tig0025415:-72652 | None:intergenic |
| TGCCCTTGTATTTGCGCGTG+GGG | 0.567879 | tig0025415:+72176 | None:intergenic |
| CAGGCTCACAAGCAGTGGCG+TGG | 0.571299 | tig0025415:+72689 | Msa1422560:CDS |
| AATGCCCTTGTATTTGCGCG+TGG | 0.576676 | tig0025415:+72174 | None:intergenic |
| AGTATACTTGTATAGAGTGT+CGG | 0.583945 | tig0025415:-72247 | None:intergenic |
| TCAAATTGGTTGAAGGCGGA+GGG | 0.587160 | tig0025415:-72558 | None:intergenic |
| AATTGGTTGAAGGCGGAGGG+TGG | 0.590989 | tig0025415:-72555 | None:intergenic |
| AAACCAATGAGTTGAACCAT+GGG | 0.591599 | tig0025415:+72399 | Msa1422560:exon |
| AAAACCAATGAGTTGAACCA+TGG | 0.594095 | tig0025415:+72398 | Msa1422560:exon |
| AGTGAGAATGAATTTAGTTG+AGG | 0.595609 | tig0025415:-72333 | None:intergenic |
| GCTCACAAGCAGTGGCGTGG+CGG | 0.599426 | tig0025415:+72692 | Msa1422560:CDS |
| AAACCGGGTTCATCCTCCGA+TGG | 0.604772 | tig0025415:+72450 | Msa1422560:CDS |
| TCGGAGACTAGAATTGGTCA+TGG | 0.604931 | tig0025415:-72228 | None:intergenic |
| GTTGCGTTCTAAGGGAGTGG+AGG | 0.612069 | tig0025415:-72583 | None:intergenic |
| GTGGTCAGGCTCACAAGCAG+TGG | 0.622037 | tig0025415:+72684 | Msa1422560:CDS |
| GAGCCTGACCACCTCAGCAG+CGG | 0.622959 | tig0025415:-72673 | None:intergenic |
| AAGACAACAACAAGAGACGA+TGG | 0.630191 | tig0025415:+72493 | Msa1422560:CDS |
| GGCAACAGCAGCAGTCGCTG+AGG | 0.632789 | tig0025415:+72629 | Msa1422560:CDS |
| GGAAGTAGTAACAAAGCGCG+TGG | 0.633674 | tig0025415:+72714 | Msa1422560:CDS |
| GGAATCAAATTGGTTGAAGG+CGG | 0.641470 | tig0025415:-72562 | None:intergenic |
| GCGTGGATTACGGTTGCCGG+AGG | 0.651028 | tig0025415:+72731 | Msa1422560:CDS |
| GAGTCGCCGGAGAAAACCCA+TGG | 0.652244 | tig0025415:-72415 | None:intergenic |
| AAAGTGGTTGAAGAAGAAGT+GGG | 0.663309 | tig0025415:-72292 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTCTATAAATTATTC+AGG | + | tig0025415:72904-72923 | Msa1422560:intron | 10.0% |
| !! | AATAAAAAAAAAATAGCAAT+AGG | - | tig0025415:73135-73154 | None:intergenic | 10.0% |
| !!! | ATTAAAATATGTGTAATTTT+AGG | + | tig0025415:73440-73459 | Msa1422560:intron | 10.0% |
| !!! | TTAAAATATGTGTAATTTTA+GGG | + | tig0025415:73441-73460 | Msa1422560:intron | 10.0% |
| !!! | AATTTTTCTATAAATTATTC+AGG | + | tig0025415:72904-72923 | Msa1422560:intron | 10.0% |
| !! | AATAAAAAAAAAATAGCAAT+AGG | - | tig0025415:73135-73154 | None:intergenic | 10.0% |
| !!! | ATTAAAATATGTGTAATTTT+AGG | + | tig0025415:73440-73459 | Msa1422560:intron | 10.0% |
| !!! | TTAAAATATGTGTAATTTTA+GGG | + | tig0025415:73441-73460 | Msa1422560:intron | 10.0% |
| !! | CATATTCATTAAATAACATA+TGG | + | tig0025415:73227-73246 | Msa1422560:intron | 15.0% |
| !!! | TTTCGTTATTTTTTAAAACT+TGG | - | tig0025415:73359-73378 | None:intergenic | 15.0% |
| !!! | TAAAATATGTGTAATTTTAG+GGG | + | tig0025415:73442-73461 | Msa1422560:intron | 15.0% |
| !!! | TATTTTTATTTTTACAGAGA+AGG | + | tig0025415:73519-73538 | Msa1422560:intron | 15.0% |
| !! | CATATTCATTAAATAACATA+TGG | + | tig0025415:73227-73246 | Msa1422560:intron | 15.0% |
| !!! | TTTCGTTATTTTTTAAAACT+TGG | - | tig0025415:73359-73378 | None:intergenic | 15.0% |
| !!! | TAAAATATGTGTAATTTTAG+GGG | + | tig0025415:73442-73461 | Msa1422560:intron | 15.0% |
| !!! | TATTTTTATTTTTACAGAGA+AGG | + | tig0025415:73519-73538 | Msa1422560:intron | 15.0% |
| !!! | TTTTTTCTTTGACTTTTTGA+AGG | - | tig0025415:72382-72401 | None:intergenic | 20.0% |
| !! | AATAGGATAGAGTTTAATTA+TGG | - | tig0025415:73118-73137 | None:intergenic | 20.0% |
| !!! | TTTTTTCTTTGACTTTTTGA+AGG | - | tig0025415:72382-72401 | None:intergenic | 20.0% |
| !! | AATAGGATAGAGTTTAATTA+TGG | - | tig0025415:73118-73137 | None:intergenic | 20.0% |
| !!! | AAAAGCTGACTGTATTTTAA+CGG | - | tig0025415:72766-72785 | None:intergenic | 25.0% |
| ! | TAGAAAAATTCGATTTCAAC+TGG | - | tig0025415:72894-72913 | None:intergenic | 25.0% |
| ! | AATTATGTCAACCAACAAAA+AGG | + | tig0025415:72943-72962 | Msa1422560:intron | 25.0% |
| !!! | AAAGTATTTGACCTTTTTGT+TGG | - | tig0025415:72957-72976 | None:intergenic | 25.0% |
| ! | TTTGCTTATAAAGATGAGAA+TGG | - | tig0025415:73195-73214 | None:intergenic | 25.0% |
| !! | ATGAGTAATATTTTGTCTCA+TGG | + | tig0025415:73542-73561 | Msa1422560:CDS | 25.0% |
| !! | TGAGTAATATTTTGTCTCAT+GGG | + | tig0025415:73543-73562 | Msa1422560:CDS | 25.0% |
| !!! | AAAAGCTGACTGTATTTTAA+CGG | - | tig0025415:72766-72785 | None:intergenic | 25.0% |
| ! | TAGAAAAATTCGATTTCAAC+TGG | - | tig0025415:72894-72913 | None:intergenic | 25.0% |
| ! | AATTATGTCAACCAACAAAA+AGG | + | tig0025415:72943-72962 | Msa1422560:intron | 25.0% |
| !!! | AAAGTATTTGACCTTTTTGT+TGG | - | tig0025415:72957-72976 | None:intergenic | 25.0% |
| ! | TTTGCTTATAAAGATGAGAA+TGG | - | tig0025415:73195-73214 | None:intergenic | 25.0% |
| !! | ATGAGTAATATTTTGTCTCA+TGG | + | tig0025415:73542-73561 | Msa1422560:CDS | 25.0% |
| !! | TGAGTAATATTTTGTCTCAT+GGG | + | tig0025415:73543-73562 | Msa1422560:CDS | 25.0% |
| AGTATACTTGTATAGAGTGT+CGG | - | tig0025415:72250-72269 | None:intergenic | 30.0% | |
| ! | AAGAAGTGTGAATGAAAAAG+TGG | - | tig0025415:72311-72330 | None:intergenic | 30.0% |
| AGTGAGAATGAATTTAGTTG+AGG | - | tig0025415:72336-72355 | None:intergenic | 30.0% | |
| !! | TTCTTTGACTTTTTGAAGGA+AGG | - | tig0025415:72378-72397 | None:intergenic | 30.0% |
| AAGAAAATTGAGAATGAGCA+TGG | - | tig0025415:72868-72887 | None:intergenic | 30.0% | |
| ATTATTCAGGAAACATGCAT+TGG | + | tig0025415:72917-72936 | Msa1422560:intron | 30.0% | |
| GGATAGAGTTTAATTATGGA+AGG | - | tig0025415:73114-73133 | None:intergenic | 30.0% | |
| AAAGATGAGAATGGAGTATA+TGG | - | tig0025415:73186-73205 | None:intergenic | 30.0% | |
| !! | AATATGTGTAATTTTAGGGG+AGG | + | tig0025415:73445-73464 | Msa1422560:intron | 30.0% |
| !! | ATATGTGTAATTTTAGGGGA+GGG | + | tig0025415:73446-73465 | Msa1422560:intron | 30.0% |
| AGTATACTTGTATAGAGTGT+CGG | - | tig0025415:72250-72269 | None:intergenic | 30.0% | |
| ! | AAGAAGTGTGAATGAAAAAG+TGG | - | tig0025415:72311-72330 | None:intergenic | 30.0% |
| AGTGAGAATGAATTTAGTTG+AGG | - | tig0025415:72336-72355 | None:intergenic | 30.0% | |
| !! | TTCTTTGACTTTTTGAAGGA+AGG | - | tig0025415:72378-72397 | None:intergenic | 30.0% |
| AAGAAAATTGAGAATGAGCA+TGG | - | tig0025415:72868-72887 | None:intergenic | 30.0% | |
| ATTATTCAGGAAACATGCAT+TGG | + | tig0025415:72917-72936 | Msa1422560:intron | 30.0% | |
| GGATAGAGTTTAATTATGGA+AGG | - | tig0025415:73114-73133 | None:intergenic | 30.0% | |
| AAAGATGAGAATGGAGTATA+TGG | - | tig0025415:73186-73205 | None:intergenic | 30.0% | |
| !! | AATATGTGTAATTTTAGGGG+AGG | + | tig0025415:73445-73464 | Msa1422560:intron | 30.0% |
| !! | ATATGTGTAATTTTAGGGGA+GGG | + | tig0025415:73446-73465 | Msa1422560:intron | 30.0% |
| AAAGTGGTTGAAGAAGAAGT+GGG | - | tig0025415:72295-72314 | None:intergenic | 35.0% | |
| AAAAGTGGTTGAAGAAGAAG+TGG | - | tig0025415:72296-72315 | None:intergenic | 35.0% | |
| !! | TTGACTTTTTGAAGGAAGGA+AGG | - | tig0025415:72374-72393 | None:intergenic | 35.0% |
| ! | AAAACCAATGAGTTGAACCA+TGG | + | tig0025415:72398-72417 | Msa1422560:exon | 35.0% |
| ! | AAACCAATGAGTTGAACCAT+GGG | + | tig0025415:72399-72418 | Msa1422560:exon | 35.0% |
| ! | AAAATACAGTCAGCTTTTCG+TGG | + | tig0025415:72768-72787 | Msa1422560:CDS | 35.0% |
| ! | GGTCAAATACTTTTCAACAG+TGG | + | tig0025415:72964-72983 | Msa1422560:intron | 35.0% |
| ATTTGATGAGATGTACTGTG+TGG | - | tig0025415:73083-73102 | None:intergenic | 35.0% | |
| AAAGTGGTTGAAGAAGAAGT+GGG | - | tig0025415:72295-72314 | None:intergenic | 35.0% | |
| AAAAGTGGTTGAAGAAGAAG+TGG | - | tig0025415:72296-72315 | None:intergenic | 35.0% | |
| !! | TTGACTTTTTGAAGGAAGGA+AGG | - | tig0025415:72374-72393 | None:intergenic | 35.0% |
| ! | AAAACCAATGAGTTGAACCA+TGG | + | tig0025415:72398-72417 | Msa1422560:exon | 35.0% |
| ! | AAACCAATGAGTTGAACCAT+GGG | + | tig0025415:72399-72418 | Msa1422560:exon | 35.0% |
| ! | AAAATACAGTCAGCTTTTCG+TGG | + | tig0025415:72768-72787 | Msa1422560:CDS | 35.0% |
| ! | GGTCAAATACTTTTCAACAG+TGG | + | tig0025415:72964-72983 | Msa1422560:intron | 35.0% |
| ATTTGATGAGATGTACTGTG+TGG | - | tig0025415:73083-73102 | None:intergenic | 35.0% | |
| AAACCCATGGTTCAACTCAT+TGG | - | tig0025415:72405-72424 | None:intergenic | 40.0% | |
| ! | AGATTTTGTACCCGATCCAT+CGG | - | tig0025415:72469-72488 | None:intergenic | 40.0% |
| AAGACAACAACAAGAGACGA+TGG | + | tig0025415:72493-72512 | Msa1422560:CDS | 40.0% | |
| GGAATCAAATTGGTTGAAGG+CGG | - | tig0025415:72565-72584 | None:intergenic | 40.0% | |
| GGAGGAATCAAATTGGTTGA+AGG | - | tig0025415:72568-72587 | None:intergenic | 40.0% | |
| ! | GCATGTTTGTTGCGTTCTAA+GGG | - | tig0025415:72594-72613 | None:intergenic | 40.0% |
| ! | TGCATGTTTGTTGCGTTCTA+AGG | - | tig0025415:72595-72614 | None:intergenic | 40.0% |
| !!! | AGCTGACTGTATTTTAACGG+CGG | - | tig0025415:72763-72782 | None:intergenic | 40.0% |
| ! | GTCAGCTTTTCGTGGTTATT+TGG | + | tig0025415:72776-72795 | Msa1422560:CDS | 40.0% |
| ATGAGATGTACTGTGTGGAA+GGG | - | tig0025415:73078-73097 | None:intergenic | 40.0% | |
| !! | TAATTTTAGGGGAGGGACAA+TGG | + | tig0025415:73453-73472 | Msa1422560:intron | 40.0% |
| AAACCCATGGTTCAACTCAT+TGG | - | tig0025415:72405-72424 | None:intergenic | 40.0% | |
| ! | AGATTTTGTACCCGATCCAT+CGG | - | tig0025415:72469-72488 | None:intergenic | 40.0% |
| AAGACAACAACAAGAGACGA+TGG | + | tig0025415:72493-72512 | Msa1422560:CDS | 40.0% | |
| GGAATCAAATTGGTTGAAGG+CGG | - | tig0025415:72565-72584 | None:intergenic | 40.0% | |
| GGAGGAATCAAATTGGTTGA+AGG | - | tig0025415:72568-72587 | None:intergenic | 40.0% | |
| ! | GCATGTTTGTTGCGTTCTAA+GGG | - | tig0025415:72594-72613 | None:intergenic | 40.0% |
| ! | TGCATGTTTGTTGCGTTCTA+AGG | - | tig0025415:72595-72614 | None:intergenic | 40.0% |
| !!! | AGCTGACTGTATTTTAACGG+CGG | - | tig0025415:72763-72782 | None:intergenic | 40.0% |
| ! | GTCAGCTTTTCGTGGTTATT+TGG | + | tig0025415:72776-72795 | Msa1422560:CDS | 40.0% |
| ATGAGATGTACTGTGTGGAA+GGG | - | tig0025415:73078-73097 | None:intergenic | 40.0% | |
| !! | TAATTTTAGGGGAGGGACAA+TGG | + | tig0025415:73453-73472 | Msa1422560:intron | 40.0% |
| TCGGAGACTAGAATTGGTCA+TGG | - | tig0025415:72231-72250 | None:intergenic | 45.0% | |
| !! | AGAGTGTCGGAGACTAGAAT+TGG | - | tig0025415:72237-72256 | None:intergenic | 45.0% |
| GAAGAAGAAGTGGGAACACT+TGG | - | tig0025415:72286-72305 | None:intergenic | 45.0% | |
| ! | GTTGAACCATGGGTTTTCTC+CGG | + | tig0025415:72409-72428 | Msa1422560:exon | 45.0% |
| ACTCTTTGGCGCCAAAAAAC+CGG | + | tig0025415:72434-72453 | Msa1422560:CDS | 45.0% | |
| AACAAGAGACGATGGAGCTT+CGG | + | tig0025415:72501-72520 | Msa1422560:CDS | 45.0% | |
| TCAAATTGGTTGAAGGCGGA+GGG | - | tig0025415:72561-72580 | None:intergenic | 45.0% | |
| ATCAAATTGGTTGAAGGCGG+AGG | - | tig0025415:72562-72581 | None:intergenic | 45.0% | |
| AGGGAGTGGAGGAATCAAAT+TGG | - | tig0025415:72575-72594 | None:intergenic | 45.0% | |
| !! | TTTGTTGCGTTCTAAGGGAG+TGG | - | tig0025415:72589-72608 | None:intergenic | 45.0% |
| ! | GTAACAAAGCGCGTGGATTA+CGG | + | tig0025415:72721-72740 | Msa1422560:CDS | 45.0% |
| GATGAGATGTACTGTGTGGA+AGG | - | tig0025415:73079-73098 | None:intergenic | 45.0% | |
| TCGGAGACTAGAATTGGTCA+TGG | - | tig0025415:72231-72250 | None:intergenic | 45.0% | |
| !! | AGAGTGTCGGAGACTAGAAT+TGG | - | tig0025415:72237-72256 | None:intergenic | 45.0% |
| GAAGAAGAAGTGGGAACACT+TGG | - | tig0025415:72286-72305 | None:intergenic | 45.0% | |
| ! | GTTGAACCATGGGTTTTCTC+CGG | + | tig0025415:72409-72428 | Msa1422560:exon | 45.0% |
| ACTCTTTGGCGCCAAAAAAC+CGG | + | tig0025415:72434-72453 | Msa1422560:CDS | 45.0% | |
| AACAAGAGACGATGGAGCTT+CGG | + | tig0025415:72501-72520 | Msa1422560:CDS | 45.0% | |
| TCAAATTGGTTGAAGGCGGA+GGG | - | tig0025415:72561-72580 | None:intergenic | 45.0% | |
| ATCAAATTGGTTGAAGGCGG+AGG | - | tig0025415:72562-72581 | None:intergenic | 45.0% | |
| AGGGAGTGGAGGAATCAAAT+TGG | - | tig0025415:72575-72594 | None:intergenic | 45.0% | |
| !! | TTTGTTGCGTTCTAAGGGAG+TGG | - | tig0025415:72589-72608 | None:intergenic | 45.0% |
| ! | GTAACAAAGCGCGTGGATTA+CGG | + | tig0025415:72721-72740 | Msa1422560:CDS | 45.0% |
| GATGAGATGTACTGTGTGGA+AGG | - | tig0025415:73079-73098 | None:intergenic | 45.0% | |
| !! | TAAAATTAACATATATTTAT+TGG | + | tig0025415:73325-73344 | Msa1422560:intron | 5.0% |
| !! | TAAAATTAACATATATTTAT+TGG | + | tig0025415:73325-73344 | Msa1422560:intron | 5.0% |
| CTCTTTGGCGCCAAAAAACC+GGG | + | tig0025415:72435-72454 | Msa1422560:CDS | 50.0% | |
| !!! | GGAGGATGAACCCGGTTTTT+TGG | - | tig0025415:72448-72467 | None:intergenic | 50.0% |
| ! | TTTTGTACCCGATCCATCGG+AGG | - | tig0025415:72466-72485 | None:intergenic | 50.0% |
| GGAAGTAGTAACAAAGCGCG+TGG | + | tig0025415:72714-72733 | Msa1422560:CDS | 50.0% | |
| AGTGAAAGCGAACTGTTCCG+TGG | + | tig0025415:73033-73052 | Msa1422560:intron | 50.0% | |
| CAACACAACACCGATGTCCA+CGG | - | tig0025415:73053-73072 | None:intergenic | 50.0% | |
| CTCTTTGGCGCCAAAAAACC+GGG | + | tig0025415:72435-72454 | Msa1422560:CDS | 50.0% | |
| !!! | GGAGGATGAACCCGGTTTTT+TGG | - | tig0025415:72448-72467 | None:intergenic | 50.0% |
| ! | TTTTGTACCCGATCCATCGG+AGG | - | tig0025415:72466-72485 | None:intergenic | 50.0% |
| GGAAGTAGTAACAAAGCGCG+TGG | + | tig0025415:72714-72733 | Msa1422560:CDS | 50.0% | |
| AGTGAAAGCGAACTGTTCCG+TGG | + | tig0025415:73033-73052 | Msa1422560:intron | 50.0% | |
| CAACACAACACCGATGTCCA+CGG | - | tig0025415:73053-73072 | None:intergenic | 50.0% | |
| TGCGCGTGGGGTTGAAACTT+TGG | + | tig0025415:72188-72207 | Msa1422560:five_prime_UTR | 55.0% | |
| ! | GGTTTTCTCCGGCGACTCTT+TGG | + | tig0025415:72420-72439 | Msa1422560:CDS | 55.0% |
| ! | TTTTGGCGCCAAAGAGTCGC+CGG | - | tig0025415:72431-72450 | None:intergenic | 55.0% |
| AAACCGGGTTCATCCTCCGA+TGG | + | tig0025415:72450-72469 | Msa1422560:CDS | 55.0% | |
| GATCCATCGGAGGATGAACC+CGG | - | tig0025415:72456-72475 | None:intergenic | 55.0% | |
| GGGTTCATCCTCCGATGGAT+CGG | + | tig0025415:72455-72474 | Msa1422560:CDS | 55.0% | |
| GGTTCATCCTCCGATGGATC+GGG | + | tig0025415:72456-72475 | Msa1422560:CDS | 55.0% | |
| AATTGGTTGAAGGCGGAGGG+TGG | - | tig0025415:72558-72577 | None:intergenic | 55.0% | |
| !! | GTTGCGTTCTAAGGGAGTGG+AGG | - | tig0025415:72586-72605 | None:intergenic | 55.0% |
| ACATGCAATCGCCGTTGCTG+CGG | + | tig0025415:72608-72627 | Msa1422560:CDS | 55.0% | |
| GCGAACTGTTCCGTGGACAT+CGG | + | tig0025415:73040-73059 | Msa1422560:intron | 55.0% | |
| !! | CGTGGACATCGGTGTTGTGT+TGG | + | tig0025415:73051-73070 | Msa1422560:intron | 55.0% |
| TGCGCGTGGGGTTGAAACTT+TGG | + | tig0025415:72188-72207 | Msa1422560:five_prime_UTR | 55.0% | |
| ! | GGTTTTCTCCGGCGACTCTT+TGG | + | tig0025415:72420-72439 | Msa1422560:CDS | 55.0% |
| ! | TTTTGGCGCCAAAGAGTCGC+CGG | - | tig0025415:72431-72450 | None:intergenic | 55.0% |
| AAACCGGGTTCATCCTCCGA+TGG | + | tig0025415:72450-72469 | Msa1422560:CDS | 55.0% | |
| GATCCATCGGAGGATGAACC+CGG | - | tig0025415:72456-72475 | None:intergenic | 55.0% | |
| GGGTTCATCCTCCGATGGAT+CGG | + | tig0025415:72455-72474 | Msa1422560:CDS | 55.0% | |
| GGTTCATCCTCCGATGGATC+GGG | + | tig0025415:72456-72475 | Msa1422560:CDS | 55.0% | |
| AATTGGTTGAAGGCGGAGGG+TGG | - | tig0025415:72558-72577 | None:intergenic | 55.0% | |
| !! | GTTGCGTTCTAAGGGAGTGG+AGG | - | tig0025415:72586-72605 | None:intergenic | 55.0% |
| ACATGCAATCGCCGTTGCTG+CGG | + | tig0025415:72608-72627 | Msa1422560:CDS | 55.0% | |
| GCGAACTGTTCCGTGGACAT+CGG | + | tig0025415:73040-73059 | Msa1422560:intron | 55.0% | |
| !! | CGTGGACATCGGTGTTGTGT+TGG | + | tig0025415:73051-73070 | Msa1422560:intron | 55.0% |
| GAGTCGCCGGAGAAAACCCA+TGG | - | tig0025415:72418-72437 | None:intergenic | 60.0% | |
| TGCTGCTGTTGCCGCAGCAA+CGG | - | tig0025415:72622-72641 | None:intergenic | 60.0% | |
| GGCATGTGCTGCAGCTAGAG+CGG | - | tig0025415:72655-72674 | None:intergenic | 60.0% | |
| GTGGTCAGGCTCACAAGCAG+TGG | + | tig0025415:72684-72703 | Msa1422560:CDS | 60.0% | |
| ! | AGCGCGTGGATTACGGTTGC+CGG | + | tig0025415:72728-72747 | Msa1422560:CDS | 60.0% |
| TTAACGGCGGCGATCTCCTC+CGG | - | tig0025415:72750-72769 | None:intergenic | 60.0% | |
| GAGTCGCCGGAGAAAACCCA+TGG | - | tig0025415:72418-72437 | None:intergenic | 60.0% | |
| TGCTGCTGTTGCCGCAGCAA+CGG | - | tig0025415:72622-72641 | None:intergenic | 60.0% | |
| GGCATGTGCTGCAGCTAGAG+CGG | - | tig0025415:72655-72674 | None:intergenic | 60.0% | |
| GTGGTCAGGCTCACAAGCAG+TGG | + | tig0025415:72684-72703 | Msa1422560:CDS | 60.0% | |
| ! | AGCGCGTGGATTACGGTTGC+CGG | + | tig0025415:72728-72747 | Msa1422560:CDS | 60.0% |
| TTAACGGCGGCGATCTCCTC+CGG | - | tig0025415:72750-72769 | None:intergenic | 60.0% | |
| TGGTTGAAGGCGGAGGGTGG+TGG | - | tig0025415:72555-72574 | None:intergenic | 65.0% | |
| GGCAACAGCAGCAGTCGCTG+AGG | + | tig0025415:72629-72648 | Msa1422560:CDS | 65.0% | |
| TGCAGCACATGCCGCTGCTG+AGG | + | tig0025415:72662-72681 | Msa1422560:CDS | 65.0% | |
| AGCACATGCCGCTGCTGAGG+TGG | + | tig0025415:72665-72684 | Msa1422560:CDS | 65.0% | |
| ATGCCGCTGCTGAGGTGGTC+AGG | + | tig0025415:72670-72689 | Msa1422560:CDS | 65.0% | |
| GAGCCTGACCACCTCAGCAG+CGG | - | tig0025415:72676-72695 | None:intergenic | 65.0% | |
| CAGGCTCACAAGCAGTGGCG+TGG | + | tig0025415:72689-72708 | Msa1422560:CDS | 65.0% | |
| GCTCACAAGCAGTGGCGTGG+CGG | + | tig0025415:72692-72711 | Msa1422560:CDS | 65.0% | |
| CTCACAAGCAGTGGCGTGGC+GGG | + | tig0025415:72693-72712 | Msa1422560:CDS | 65.0% | |
| ! | GCGTGGATTACGGTTGCCGG+AGG | + | tig0025415:72731-72750 | Msa1422560:CDS | 65.0% |
| TGGTTGAAGGCGGAGGGTGG+TGG | - | tig0025415:72555-72574 | None:intergenic | 65.0% | |
| GGCAACAGCAGCAGTCGCTG+AGG | + | tig0025415:72629-72648 | Msa1422560:CDS | 65.0% | |
| TGCAGCACATGCCGCTGCTG+AGG | + | tig0025415:72662-72681 | Msa1422560:CDS | 65.0% | |
| AGCACATGCCGCTGCTGAGG+TGG | + | tig0025415:72665-72684 | Msa1422560:CDS | 65.0% | |
| ATGCCGCTGCTGAGGTGGTC+AGG | + | tig0025415:72670-72689 | Msa1422560:CDS | 65.0% | |
| GAGCCTGACCACCTCAGCAG+CGG | - | tig0025415:72676-72695 | None:intergenic | 65.0% | |
| CAGGCTCACAAGCAGTGGCG+TGG | + | tig0025415:72689-72708 | Msa1422560:CDS | 65.0% | |
| GCTCACAAGCAGTGGCGTGG+CGG | + | tig0025415:72692-72711 | Msa1422560:CDS | 65.0% | |
| CTCACAAGCAGTGGCGTGGC+GGG | + | tig0025415:72693-72712 | Msa1422560:CDS | 65.0% | |
| ! | GCGTGGATTACGGTTGCCGG+AGG | + | tig0025415:72731-72750 | Msa1422560:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025415 | gene | 72188 | 73580 | 72188 | ID=Msa1422560;Name=Msa1422560 |
| tig0025415 | mRNA | 72188 | 73580 | 72188 | ID=Msa1422560-mRNA-1;Parent=Msa1422560;Name=Msa1422560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=229|1|1|1|0|0.5|2|0|142 |
| tig0025415 | exon | 72188 | 72797 | 72188 | ID=Msa1422560-mRNA-1:exon:2622;Parent=Msa1422560-mRNA-1 |
| tig0025415 | exon | 73536 | 73580 | 73536 | ID=Msa1422560-mRNA-1:exon:2623;Parent=Msa1422560-mRNA-1 |
| tig0025415 | five_prime_UTR | 72188 | 72416 | 72188 | ID=Msa1422560-mRNA-1:five_prime_utr;Parent=Msa1422560-mRNA-1 |
| tig0025415 | CDS | 72417 | 72797 | 72417 | ID=Msa1422560-mRNA-1:cds;Parent=Msa1422560-mRNA-1 |
| tig0025415 | CDS | 73536 | 73580 | 73536 | ID=Msa1422560-mRNA-1:cds;Parent=Msa1422560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
