AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1422830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422830 MtrunA17_Chr3g0135001 89.858 424 22 7 1 409 1 418 0.0 684
Msa1422830 MtrunA17_Chr5g0400951 36.150 426 243 9 3 406 2 420 1.65e-56 192
Msa1422830 MtrunA17_Chr4g0064381 38.182 110 65 2 144 253 129 235 4.09e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1422830 AT1G10720.1 41.995 381 157 11 55 394 51 408 1.72e-66 218
Msa1422830 AT3G49800.1 36.215 428 227 10 3 394 2 419 1.24e-61 205
Msa1422830 AT5G65910.1 34.928 418 210 11 3 394 2 383 2.82e-50 175
Msa1422830 AT2G10950.1 34.975 203 109 7 62 253 25 215 5.83e-25 104
Msa1422830 AT2G10950.2 34.975 203 109 7 62 253 25 215 5.83e-25 104
Msa1422830 AT2G10950.3 34.975 203 109 7 62 253 25 215 5.83e-25 104

Find 115 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGACGATGATTCTGATTT+AGG 0.116038 tig0025489:+51204 Msa1422830:CDS
AAACCCTAACTCGTCAATTT+TGG 0.118472 tig0025489:+47683 Msa1422830:CDS
CTTCCGAAAATTTCAAATTC+AGG 0.205294 tig0025489:-50883 None:intergenic
TTATTTATGGTGGATGTAAT+AGG 0.210532 tig0025489:+51829 Msa1422830:three_prime_UTR
GGAAAATCCAACCAGGTTTC+AGG 0.211999 tig0025489:-47946 None:intergenic
GAAATATGAGCATCTATTTC+AGG 0.220511 tig0025489:+51711 Msa1422830:three_prime_UTR
GCATTATTATTATTGTTTCT+AGG 0.244863 tig0025489:-47577 None:intergenic
TATACATTCTTGCACCTATA+TGG 0.263855 tig0025489:-51754 None:intergenic
AGCTTCTCAAATTATGATTC+AGG 0.278846 tig0025489:+51152 Msa1422830:CDS
TCCTGTTCTCCTTCCGAATT+CGG 0.293303 tig0025489:-47847 None:intergenic
CAGACGATGATTCTGATTTA+GGG 0.320175 tig0025489:+51205 Msa1422830:CDS
GTTGACACACCAAGGCAATT+AGG 0.324414 tig0025489:-51887 None:intergenic
ATATGAGTGAAAGTTACTTT+TGG 0.337115 tig0025489:+48292 Msa1422830:CDS
ATATCTTCTTCATTCACAAT+AGG 0.340594 tig0025489:-51249 None:intergenic
AATTATTGAAATAATCACTA+TGG 0.344835 tig0025489:-51922 None:intergenic
TATTTATGGTGGATGTAATA+GGG 0.355629 tig0025489:+51830 Msa1422830:three_prime_UTR
TGGTGGATGTAATAGGGTTC+GGG 0.359587 tig0025489:+51836 Msa1422830:three_prime_UTR
TACCCCAAAATTGACGAGTT+AGG 0.366692 tig0025489:-47687 None:intergenic
CACCAAGGCAATTAGGATTC+AGG 0.370842 tig0025489:-51880 None:intergenic
GATCTCGAGGATGATGATTA+TGG 0.375938 tig0025489:+51282 Msa1422830:CDS
AAGTACACAATTGAAAGTTC+TGG 0.380859 tig0025489:+51051 Msa1422830:CDS
AAAGAGAATTGCCAGATGTT+TGG 0.381680 tig0025489:+51413 Msa1422830:three_prime_UTR
TTATCATCTTCCTCGTCAAT+TGG 0.385268 tig0025489:-47967 None:intergenic
ATGGTGGATGTAATAGGGTT+CGG 0.385725 tig0025489:+51835 Msa1422830:three_prime_UTR
TTCAAATCAAAATTCTGAAA+TGG 0.387588 tig0025489:+47792 Msa1422830:CDS
AGGTGAGGTGGTTGGAGATT+CGG 0.393384 tig0025489:-47557 None:intergenic
ACCCCAAAATTGACGAGTTA+GGG 0.399070 tig0025489:-47686 None:intergenic
ATAGTTGATGGAGGAGGAGG+AGG 0.401782 tig0025489:-47727 None:intergenic
TATCTTCTTCATTCACAATA+GGG 0.403821 tig0025489:-51248 None:intergenic
AAAACATCAAACATGGATAC+TGG 0.409853 tig0025489:+51438 Msa1422830:three_prime_UTR
GAGAGAAGAGGTTAAAAGTT+GGG 0.412323 tig0025489:-47379 None:intergenic
ATCAGGTGGGTGTTGCATTA+CGG 0.415921 tig0025489:-47356 None:intergenic
GGATGATCCTCAACCGAATT+CGG 0.422197 tig0025489:+47834 Msa1422830:CDS
GACATGCCTCATCGGACATT+CGG 0.431916 tig0025489:+50982 Msa1422830:CDS
TGAGAGAAGAGGTTAAAAGT+TGG 0.433249 tig0025489:-47380 None:intergenic
ACCGAATTCGGAAGGAGAAC+AGG 0.434653 tig0025489:+47846 Msa1422830:CDS
TGAGATTGAGAAATAGTTGA+TGG 0.437383 tig0025489:-47739 None:intergenic
ATCAGATAAGTCGGTTATTG+AGG 0.438020 tig0025489:+51083 Msa1422830:CDS
GTATTTCAAAACAACTCAAA+TGG 0.451191 tig0025489:+51609 Msa1422830:three_prime_UTR
AGAGGTTAAAAGTTGGGATC+AGG 0.455029 tig0025489:-47373 None:intergenic
CTCCTGAATCCTAATTGCCT+TGG 0.461505 tig0025489:+51878 Msa1422830:three_prime_UTR
TCTCCTTCCGAATTCGGTTG+AGG 0.463205 tig0025489:-47841 None:intergenic
ATAGGTGTCATCTGATAAGC+TGG 0.468819 tig0025489:-50953 None:intergenic
GATATCGAAAACATGGTTGT+GGG 0.472505 tig0025489:+51686 Msa1422830:three_prime_UTR
AGATATCGAAAACATGGTTG+TGG 0.473074 tig0025489:+51685 Msa1422830:three_prime_UTR
GAAATAGTTGATGGAGGAGG+AGG 0.481125 tig0025489:-47730 None:intergenic
TGAGAAATAGTTGATGGAGG+AGG 0.481171 tig0025489:-47733 None:intergenic
TTCCTGCATCCACATTGATC+TGG 0.490551 tig0025489:-50842 None:intergenic
TGGAACAAGGTGTGTTTCGT+GGG 0.498516 tig0025489:+47812 Msa1422830:CDS
ATGAGGCATGTCATCAGAAT+AGG 0.499437 tig0025489:-50971 None:intergenic
AGCCAGATCAATGTGGATGC+AGG 0.502125 tig0025489:+50840 Msa1422830:CDS
AAATATGAGCATCTATTTCA+GGG 0.503499 tig0025489:+51712 Msa1422830:three_prime_UTR
AACAACTTCTTTGTCTGTGA+TGG 0.504969 tig0025489:+51011 Msa1422830:CDS
ATTATTATTGTTTCTAGGTG+AGG 0.514535 tig0025489:-47572 None:intergenic
ATTCTTAGCGCAGCTAATCT+CGG 0.515912 tig0025489:-48252 None:intergenic
ATTATTGTTTCTAGGTGAGG+TGG 0.517111 tig0025489:-47569 None:intergenic
TTCGGAAGGAGAACAGGAAA+GGG 0.519132 tig0025489:+47852 Msa1422830:CDS
TAACTTCGCTCACCATTATG+TGG 0.525605 tig0025489:-51484 None:intergenic
TTTGTTGTTATTGAGAGAAG+AGG 0.526195 tig0025489:-47391 None:intergenic
ATGACGACGGTGATGATGAT+TGG 0.533375 tig0025489:+51181 Msa1422830:CDS
GATTGAGAAATAGTTGATGG+AGG 0.533882 tig0025489:-47736 None:intergenic
CCTAAATCAGAATCATCGTC+TGG 0.535306 tig0025489:-51204 None:intergenic
TTGATTTCTTGTTCCGTGTG+AGG 0.537835 tig0025489:-51390 None:intergenic
CGATTCGGAGAGAGTTTGCA+AGG 0.544073 tig0025489:-47492 None:intergenic
TAGGGTTCGGGTTTCTACCC+CGG 0.547800 tig0025489:+51848 Msa1422830:three_prime_UTR
AGCATGATCTCGTTGGTCCT+CGG 0.550779 tig0025489:-48208 None:intergenic
TTTGATATACAATGCGCGGT+TGG 0.551967 tig0025489:+47877 Msa1422830:CDS
GCAAGGCTAGGTGGGTTTGA+AGG 0.553989 tig0025489:+51578 Msa1422830:three_prime_UTR
TTGTTTCTAGGTGAGGTGGT+TGG 0.556311 tig0025489:-47565 None:intergenic
GGTTAAAAGTTGGGATCAGG+TGG 0.557489 tig0025489:-47370 None:intergenic
ATCACATTTATCAGATAAGT+CGG 0.557852 tig0025489:+51074 Msa1422830:CDS
TAGTAGCAATTCAGATTCAA+AGG 0.559727 tig0025489:+51317 Msa1422830:CDS
GCTTAATAAACAAGATTCTG+AGG 0.560595 tig0025489:+48344 Msa1422830:CDS
AGGGGCACTGGAACCTCACA+CGG 0.560694 tig0025489:+51377 Msa1422830:three_prime_UTR
AAATGCTGTGATGATATTTG+AGG 0.563683 tig0025489:+51510 Msa1422830:three_prime_UTR
TCGCTATGCATCCTGAAACC+TGG 0.573694 tig0025489:+47935 Msa1422830:CDS
CGCGGTTGGAATTACTGAGG+AGG 0.575478 tig0025489:+47891 Msa1422830:CDS
ATGGAACAAGGTGTGTTTCG+TGG 0.577001 tig0025489:+47811 Msa1422830:CDS
CAAAATTCTGAAATGGAACA+AGG 0.577149 tig0025489:+47799 Msa1422830:CDS
AATAATGATGAAACGTTGCA+AGG 0.577943 tig0025489:+47625 Msa1422830:CDS
ATTCGGAAGGAGAACAGGAA+AGG 0.580219 tig0025489:+47851 Msa1422830:CDS
ATTCTGATGACATGCCTCAT+CGG 0.584652 tig0025489:+50974 Msa1422830:CDS
ATCATGCTATGGTTGTTGAA+AGG 0.587242 tig0025489:+48223 Msa1422830:CDS
CAAACACAGTTGACACACCA+AGG 0.593634 tig0025489:-51895 None:intergenic
GATGAAACGTTGCAAGGTCG+TGG 0.598947 tig0025489:+47631 Msa1422830:CDS
AGGATTCAGGAGAACAACAC+CGG 0.602635 tig0025489:-51867 None:intergenic
TATATCTTTCAGCGATCTCG+AGG 0.605970 tig0025489:+51269 Msa1422830:CDS
AGACGATGATTCTGATTTAG+GGG 0.611211 tig0025489:+51206 Msa1422830:CDS
TTGATATTTGATGACAAACA+AGG 0.613012 tig0025489:-51784 None:intergenic
ACAAACAATAAACCATTCGA+AGG 0.617726 tig0025489:+47409 Msa1422830:five_prime_UTR
CAACCATAGCATGATCTCGT+TGG 0.618660 tig0025489:-48215 None:intergenic
GGAATTTGATATACAATGCG+CGG 0.621961 tig0025489:+47873 Msa1422830:CDS
GATCCTCAACCGAATTCGGA+AGG 0.622984 tig0025489:+47838 Msa1422830:CDS
GGATTCAGGAGAACAACACC+GGG 0.625463 tig0025489:-51866 None:intergenic
GACGATGATTCTGATTTAGG+GGG 0.629733 tig0025489:+51207 Msa1422830:CDS
TATGCATCCTGAAACCTGGT+TGG 0.632143 tig0025489:+47939 Msa1422830:CDS
GTCAATTGGAAAATCCAACC+AGG 0.642583 tig0025489:-47953 None:intergenic
GTTAAAAGTTGGGATCAGGT+GGG 0.652987 tig0025489:-47369 None:intergenic
TAACTTTCACTCATATGACA+AGG 0.653724 tig0025489:-48285 None:intergenic
GGACCAACGAGATCATGCTA+TGG 0.655051 tig0025489:+48212 Msa1422830:CDS
GGGTTTGTTTGATTTCGTCG+AGG 0.657504 tig0025489:-47666 None:intergenic
TAGGTGTCATCTGATAAGCT+GGG 0.666888 tig0025489:-50952 None:intergenic
AGGTGGGTGTTGCATTACGG+TGG 0.672727 tig0025489:-47353 None:intergenic
AACTTTCACTCATATGACAA+GGG 0.678075 tig0025489:-48284 None:intergenic
TAGCAATTCAGATTCAAAGG+TGG 0.680098 tig0025489:+51320 Msa1422830:CDS
TTCAAACCCACCTAGCCTTG+CGG 0.682308 tig0025489:-51576 None:intergenic
GATTCGGAGAGAGTTTGCAA+GGG 0.683544 tig0025489:-47491 None:intergenic
CTATATCCGAATGTCCGATG+AGG 0.695034 tig0025489:-50988 None:intergenic
TCATGGTAGCCAGATCAATG+TGG 0.707205 tig0025489:+50833 Msa1422830:CDS
ATTCAGGACTATGATGACGA+CGG 0.722996 tig0025489:+51168 Msa1422830:CDS
GGAACAAGGTGTGTTTCGTG+GGG 0.730599 tig0025489:+47813 Msa1422830:CDS
GACGAGGAAGATGATAACGA+CGG 0.733347 tig0025489:+47973 Msa1422830:CDS
ATGCGCGGTTGGAATTACTG+AGG 0.743287 tig0025489:+47888 Msa1422830:CDS
AACTTCAGATGACACGACTG+AGG 0.758277 tig0025489:+51347 Msa1422830:exon
GATTCAGGAGAACAACACCG+GGG 0.849144 tig0025489:-51865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATCAGAAA+TGG - tig0025489:48089-48108 None:intergenic 10.0%
!!! ATATTTTTAATTTTACCATT+AGG + tig0025489:49474-49493 Msa1422830:intron 10.0%
!!! TATTTTTAATTTTACCATTA+GGG + tig0025489:49475-49494 Msa1422830:intron 10.0%
!!! TGATTTTTTTCATTTATTTA+TGG + tig0025489:51816-51835 Msa1422830:three_prime_UTR 10.0%
!!! ATTTTGATTTGAAATTACAT+CGG - tig0025489:47785-47804 None:intergenic 15.0%
!! TTTATGTATTTATAATTGCT+AGG + tig0025489:48480-48499 Msa1422830:intron 15.0%
!! AAAAAAAAATTCCTGATTAT+TGG + tig0025489:48887-48906 Msa1422830:intron 15.0%
!! ATTAAAACTCAAAATCTAAA+TGG + tig0025489:49120-49139 Msa1422830:intron 15.0%
!!! ATTTTTAATTTTACCATTAG+GGG + tig0025489:49476-49495 Msa1422830:intron 15.0%
!!! TTTTTTTCATTTATTTATGG+TGG + tig0025489:51819-51838 Msa1422830:three_prime_UTR 15.0%
!! AATTATTGAAATAATCACTA+TGG - tig0025489:51925-51944 None:intergenic 15.0%
!! AAAAACAAAAAATGTCATCA+TGG + tig0025489:47458-47477 Msa1422830:exon 20.0%
!!! GCATTATTATTATTGTTTCT+AGG - tig0025489:47580-47599 None:intergenic 20.0%
!!! TTCAAATCAAAATTCTGAAA+TGG + tig0025489:47792-47811 Msa1422830:CDS 20.0%
!! ATAATAATGTGCTAGATTAT+TGG + tig0025489:48104-48123 Msa1422830:intron 20.0%
!! TTGCTTGTAAATTATAAACT+AGG + tig0025489:48656-48675 Msa1422830:intron 20.0%
!! TTAATGATCTGCTATTAATT+GGG - tig0025489:48940-48959 None:intergenic 20.0%
!! TTTAATGATCTGCTATTAAT+TGG - tig0025489:48941-48960 None:intergenic 20.0%
!!! ATTCACTTTTAATTTGTTTC+TGG - tig0025489:49102-49121 None:intergenic 20.0%
!! GAAATAAAATAATGTTGAGT+CGG - tig0025489:49417-49436 None:intergenic 20.0%
!!! TTTTTAATTTTACCATTAGG+GGG + tig0025489:49477-49496 Msa1422830:intron 20.0%
!! ATTTAAATTTCTACTTCAGT+TGG + tig0025489:49743-49762 Msa1422830:intron 20.0%
!! TTTAAATTTCTACTTCAGTT+GGG + tig0025489:49744-49763 Msa1422830:intron 20.0%
!! GAATTAGAAGAAATCTTAAA+AGG - tig0025489:49905-49924 None:intergenic 20.0%
!! TAATCGTGTGTATTATAATT+TGG - tig0025489:50083-50102 None:intergenic 20.0%
!!! TTAAAAACTTATAACTTGTG+AGG - tig0025489:50393-50412 None:intergenic 20.0%
!! TAAAGTGAAAGATTTGTAAT+TGG + tig0025489:50544-50563 Msa1422830:intron 20.0%
!! AAAGTGAAAGATTTGTAATT+GGG + tig0025489:50545-50564 Msa1422830:intron 20.0%
!!! TATTTTAAAGCTACGATAAT+GGG + tig0025489:50769-50788 Msa1422830:intron 20.0%
!!! TTGTTTTCAGTTTTATTACT+TGG - tig0025489:51114-51133 None:intergenic 20.0%
!!! TTTTTTAGATATCGAAAACA+TGG + tig0025489:51679-51698 Msa1422830:three_prime_UTR 20.0%
!!! ATTATTATTGTTTCTAGGTG+AGG - tig0025489:47575-47594 None:intergenic 25.0%
!!! ATATGAGTGAAAGTTACTTT+TGG + tig0025489:48292-48311 Msa1422830:CDS 25.0%
!! ATTTTGTACTTTTGCATTCA+AGG + tig0025489:48322-48341 Msa1422830:CDS 25.0%
! TTGCTATCTAATAGAAATAC+TGG - tig0025489:48540-48559 None:intergenic 25.0%
! TTGTAAATTATAAACTAGGC+AGG + tig0025489:48660-48679 Msa1422830:intron 25.0%
! TGTAAATTATAAACTAGGCA+GGG + tig0025489:48661-48680 Msa1422830:intron 25.0%
! AATTAAGCATCATGCTTTAT+CGG - tig0025489:49058-49077 None:intergenic 25.0%
! AGTTCAAAACAACTAATTAC+TGG + tig0025489:49144-49163 Msa1422830:intron 25.0%
! TGAAGATAATGATTATGTTG+TGG - tig0025489:49221-49240 None:intergenic 25.0%
!!! ATCTTCATTTTTAGATAGTG+AGG + tig0025489:49234-49253 Msa1422830:intron 25.0%
!! TTTTTCCATATTTGTGATAG+CGG - tig0025489:49546-49565 None:intergenic 25.0%
! ACTATTACATATTGGGATTT+GGG - tig0025489:49633-49652 None:intergenic 25.0%
! CTATACCACTATTACATATT+GGG - tig0025489:49640-49659 None:intergenic 25.0%
! AATATGTAATAGTGGTATAG+CGG + tig0025489:49640-49659 Msa1422830:intron 25.0%
! GATAACAAAAACATTTAGAG+AGG - tig0025489:49687-49706 None:intergenic 25.0%
! GGCAAAAGAAATTTAGAAAA+TGG - tig0025489:49884-49903 None:intergenic 25.0%
!!! TTCCAGATTTTGATTGTTAT+TGG + tig0025489:49964-49983 Msa1422830:intron 25.0%
! TTCCAATAACAATCAAAATC+TGG - tig0025489:49969-49988 None:intergenic 25.0%
! AATCCAAGAATAGAGATTAT+TGG + tig0025489:49987-50006 Msa1422830:intron 25.0%
! TTTCCAATAATCTCTATTCT+TGG - tig0025489:49993-50012 None:intergenic 25.0%
! TCATATGTTAATGCCTAATA+CGG + tig0025489:50123-50142 Msa1422830:intron 25.0%
! ATATGTTTGGATTGATGAAA+AGG + tig0025489:50146-50165 Msa1422830:intron 25.0%
! TATGTTTGGATTGATGAAAA+GGG + tig0025489:50147-50166 Msa1422830:intron 25.0%
! TCGTTAAACATTCTATTGTT+TGG + tig0025489:50184-50203 Msa1422830:intron 25.0%
! AATAAAGCAAATATTCTCCA+TGG - tig0025489:50601-50620 None:intergenic 25.0%
!!! TATTTGCTTTATTTGAAGAG+AGG + tig0025489:50608-50627 Msa1422830:intron 25.0%
!! AAATGTTCCTTTTCTTAGTT+TGG + tig0025489:50673-50692 Msa1422830:intron 25.0%
!!! GTATTTTAAAGCTACGATAA+TGG + tig0025489:50768-50787 Msa1422830:intron 25.0%
!!! ATCTTAGTTTTAACTTTTGC+AGG + tig0025489:50810-50829 Msa1422830:intron 25.0%
!!! AAGCCTGAATTTGAAATTTT+CGG + tig0025489:50880-50899 Msa1422830:CDS 25.0%
! ATCACATTTATCAGATAAGT+CGG + tig0025489:51074-51093 Msa1422830:CDS 25.0%
! GAAAACAAAGATCTAAAAAG+TGG + tig0025489:51126-51145 Msa1422830:CDS 25.0%
! TATCTTCTTCATTCACAATA+GGG - tig0025489:51251-51270 None:intergenic 25.0%
! ATATCTTCTTCATTCACAAT+AGG - tig0025489:51252-51271 None:intergenic 25.0%
! TTTGGTAAAAACATCAAACA+TGG + tig0025489:51431-51450 Msa1422830:three_prime_UTR 25.0%
!!! TATCTTTTTTGTCCACATAA+TGG + tig0025489:51472-51491 Msa1422830:three_prime_UTR 25.0%
! GTATTTCAAAACAACTCAAA+TGG + tig0025489:51609-51628 Msa1422830:three_prime_UTR 25.0%
! AAATATGAGCATCTATTTCA+GGG + tig0025489:51712-51731 Msa1422830:three_prime_UTR 25.0%
!!! TTTGTTTTAAGACACCATAT+AGG + tig0025489:51740-51759 Msa1422830:three_prime_UTR 25.0%
!! TTGATATTTGATGACAAACA+AGG - tig0025489:51787-51806 None:intergenic 25.0%
!!! TTATTTATGGTGGATGTAAT+AGG + tig0025489:51829-51848 Msa1422830:three_prime_UTR 25.0%
!!! TATTTATGGTGGATGTAATA+GGG + tig0025489:51830-51849 Msa1422830:three_prime_UTR 25.0%
!! TTTGTTGTTATTGAGAGAAG+AGG - tig0025489:47394-47413 None:intergenic 30.0%
ACAAACAATAAACCATTCGA+AGG + tig0025489:47409-47428 Msa1422830:five_prime_UTR 30.0%
AATAATGATGAAACGTTGCA+AGG + tig0025489:47625-47644 Msa1422830:CDS 30.0%
TGAGATTGAGAAATAGTTGA+TGG - tig0025489:47742-47761 None:intergenic 30.0%
!! CAAAATTCTGAAATGGAACA+AGG + tig0025489:47799-47818 Msa1422830:CDS 30.0%
TTCATTCATAGCTACAGAAA+TGG - tig0025489:48149-48168 None:intergenic 30.0%
AACTTTCACTCATATGACAA+GGG - tig0025489:48287-48306 None:intergenic 30.0%
TAACTTTCACTCATATGACA+AGG - tig0025489:48288-48307 None:intergenic 30.0%
GCTTAATAAACAAGATTCTG+AGG + tig0025489:48344-48363 Msa1422830:CDS 30.0%
AAGGAATAAATGCAACAGTA+AGG - tig0025489:48715-48734 None:intergenic 30.0%
TTCCTTTAATTCATGTTGCT+TGG + tig0025489:48729-48748 Msa1422830:intron 30.0%
TAAGCCACAATATACAAAGA+GGG - tig0025489:48755-48774 None:intergenic 30.0%
TTAAGCCACAATATACAAAG+AGG - tig0025489:48756-48775 None:intergenic 30.0%
TTCTCAGAGGTTTGAATTTA+TGG + tig0025489:48821-48840 Msa1422830:intron 30.0%
AATGAGTTCTACCAATAATC+AGG - tig0025489:48901-48920 None:intergenic 30.0%
AAATCCGCTATAAGAAATAG+CGG + tig0025489:48960-48979 Msa1422830:intron 30.0%
!! TTATCCGCTATTTCTTATAG+CGG - tig0025489:48967-48986 None:intergenic 30.0%
TAATGATTATGTTGTGGAAG+AGG - tig0025489:49215-49234 None:intergenic 30.0%
!! GGATTCATTTTAGAAGTTGA+AGG - tig0025489:49265-49284 None:intergenic 30.0%
TATGAAATGAAGAGAGAAGA+CGG + tig0025489:49314-49333 Msa1422830:intron 30.0%
AATAACCGCTATCACAAATA+TGG + tig0025489:49538-49557 Msa1422830:intron 30.0%
CTATTACATATTGGGATTTG+GGG - tig0025489:49632-49651 None:intergenic 30.0%
CACTATTACATATTGGGATT+TGG - tig0025489:49634-49653 None:intergenic 30.0%
CAAATCCCAATATGTAATAG+TGG + tig0025489:49632-49651 Msa1422830:intron 30.0%
GCTATACCACTATTACATAT+TGG - tig0025489:49641-49660 None:intergenic 30.0%
!! TTAGAGAGGTGTTAAATAAC+CGG - tig0025489:49673-49692 None:intergenic 30.0%
! AAGCAATTTTAGATACAGAC+TGG + tig0025489:49938-49957 Msa1422830:intron 30.0%
ATTGTTATAGTCTTTCTTCC+TGG + tig0025489:50025-50044 Msa1422830:intron 30.0%
AATCCAAACATATCCGTATT+AGG - tig0025489:50139-50158 None:intergenic 30.0%
GATTGATGAAAAGGGATAAA+TGG + tig0025489:50155-50174 Msa1422830:intron 30.0%
ATGAAAAGGGATAAATGGAT+GGG + tig0025489:50160-50179 Msa1422830:intron 30.0%
TTGTTTGGATTGTTCAGAAT+AGG + tig0025489:50199-50218 Msa1422830:intron 30.0%
AAGAATGCAACATGATTTCA+TGG + tig0025489:50228-50247 Msa1422830:intron 30.0%
TTAGGACTTAGGATATCTAA+TGG - tig0025489:50365-50384 None:intergenic 30.0%
!! GATCTATCATTGTTTTACCA+TGG + tig0025489:50581-50600 Msa1422830:intron 30.0%
!! AAGTGTTTCTCATTTTTCCT+CGG + tig0025489:50638-50657 Msa1422830:intron 30.0%
CAATGAACCAAACTAAGAAA+AGG - tig0025489:50683-50702 None:intergenic 30.0%
CTTCCGAAAATTTCAAATTC+AGG - tig0025489:50886-50905 None:intergenic 30.0%
AAGTACACAATTGAAAGTTC+TGG + tig0025489:51051-51070 Msa1422830:CDS 30.0%
AGCTTCTCAAATTATGATTC+AGG + tig0025489:51152-51171 Msa1422830:CDS 30.0%
TAGTAGCAATTCAGATTCAA+AGG + tig0025489:51317-51336 Msa1422830:CDS 30.0%
!! TGATGTTTTTACCAAACATC+TGG - tig0025489:51427-51446 None:intergenic 30.0%
AAAACATCAAACATGGATAC+TGG + tig0025489:51438-51457 Msa1422830:three_prime_UTR 30.0%
AAATGCTGTGATGATATTTG+AGG + tig0025489:51510-51529 Msa1422830:three_prime_UTR 30.0%
GCAAAAAATTGTAGGGAAAA+AGG - tig0025489:51557-51576 None:intergenic 30.0%
!! AAACATCAGATTGCTTTTCT+TGG - tig0025489:51651-51670 None:intergenic 30.0%
GAAATATGAGCATCTATTTC+AGG + tig0025489:51711-51730 Msa1422830:three_prime_UTR 30.0%
TATACATTCTTGCACCTATA+TGG - tig0025489:51757-51776 None:intergenic 30.0%
GAGAGAAGAGGTTAAAAGTT+GGG - tig0025489:47382-47401 None:intergenic 35.0%
TGAGAGAAGAGGTTAAAAGT+TGG - tig0025489:47383-47402 None:intergenic 35.0%
! CATCATCATCATCATCGATT+CGG - tig0025489:47510-47529 None:intergenic 35.0%
! ATCGATGATGATGATGATGA+TGG + tig0025489:47511-47530 Msa1422830:CDS 35.0%
!! ATTATTGTTTCTAGGTGAGG+TGG - tig0025489:47572-47591 None:intergenic 35.0%
! AAACCCTAACTCGTCAATTT+TGG + tig0025489:47683-47702 Msa1422830:CDS 35.0%
! AACCCTAACTCGTCAATTTT+GGG + tig0025489:47684-47703 Msa1422830:CDS 35.0%
!! GATTGAGAAATAGTTGATGG+AGG - tig0025489:47739-47758 None:intergenic 35.0%
GGAATTTGATATACAATGCG+CGG + tig0025489:47873-47892 Msa1422830:CDS 35.0%
TTATCATCTTCCTCGTCAAT+TGG - tig0025489:47970-47989 None:intergenic 35.0%
!!! TGTAGATTTTGAAATGTCCG+AGG + tig0025489:48191-48210 Msa1422830:intron 35.0%
ATCATGCTATGGTTGTTGAA+AGG + tig0025489:48223-48242 Msa1422830:CDS 35.0%
AACTGCGAAATAACAAACCT+GGG - tig0025489:48382-48401 None:intergenic 35.0%
AAACTGCGAAATAACAAACC+TGG - tig0025489:48383-48402 None:intergenic 35.0%
AGCAATCCAAGCTTGAAATT+TGG + tig0025489:48555-48574 Msa1422830:intron 35.0%
CTACTTCCAAATTTCAAGCT+TGG - tig0025489:48564-48583 None:intergenic 35.0%
CAAGCTTGAAATTTGGAAGT+AGG + tig0025489:48562-48581 Msa1422830:intron 35.0%
! TGGTTTTCAATGCCATCTTT+TGG + tig0025489:48585-48604 Msa1422830:intron 35.0%
! GGTTTTCAATGCCATCTTTT+GGG + tig0025489:48586-48605 Msa1422830:intron 35.0%
!!! CATCTTTTGGGACTTTACTA+GGG + tig0025489:48598-48617 Msa1422830:intron 35.0%
! ACTTTTGCATCCTTATCAGT+CGG - tig0025489:48690-48709 None:intergenic 35.0%
!! ATAAGAAATAGCGGATAACG+TGG + tig0025489:48969-48988 Msa1422830:intron 35.0%
! TTTTATGCTTTTCCCCCTAA+TGG - tig0025489:49492-49511 None:intergenic 35.0%
! AGCGGTTATTGATTACATAG+CGG - tig0025489:49528-49547 None:intergenic 35.0%
! TTTCTTCCTGGTGTGAATTT+TGG + tig0025489:50037-50056 Msa1422830:intron 35.0%
ATGCCTAATACGGATATGTT+TGG + tig0025489:50133-50152 Msa1422830:intron 35.0%
GATGAAAAGGGATAAATGGA+TGG + tig0025489:50159-50178 Msa1422830:intron 35.0%
ATATCTAATGGAGAGTAGAG+TGG - tig0025489:50353-50372 None:intergenic 35.0%
! ATAACTTGTGAGGCTATGTT+AGG - tig0025489:50383-50402 None:intergenic 35.0%
!!! GCTGTAGTTGTTTCTTCTTT+TGG + tig0025489:50491-50510 Msa1422830:intron 35.0%
!!! GTTTTAACTTTTGCAGGTCA+TGG + tig0025489:50816-50835 Msa1422830:intron 35.0%
AACAACTTCTTTGTCTGTGA+TGG + tig0025489:51011-51030 Msa1422830:CDS 35.0%
ATCAGATAAGTCGGTTATTG+AGG + tig0025489:51083-51102 Msa1422830:CDS 35.0%
CAGACGATGATTCTGATTTA+GGG + tig0025489:51205-51224 Msa1422830:CDS 35.0%
AGACGATGATTCTGATTTAG+GGG + tig0025489:51206-51225 Msa1422830:CDS 35.0%
TAGCAATTCAGATTCAAAGG+TGG + tig0025489:51320-51339 Msa1422830:CDS 35.0%
AAAGAGAATTGCCAGATGTT+TGG + tig0025489:51413-51432 Msa1422830:three_prime_UTR 35.0%
AGATATCGAAAACATGGTTG+TGG + tig0025489:51685-51704 Msa1422830:three_prime_UTR 35.0%
GATATCGAAAACATGGTTGT+GGG + tig0025489:51686-51705 Msa1422830:three_prime_UTR 35.0%
GTTAAAAGTTGGGATCAGGT+GGG - tig0025489:47372-47391 None:intergenic 40.0%
AGAGGTTAAAAGTTGGGATC+AGG - tig0025489:47376-47395 None:intergenic 40.0%
ACAAAAAAGCGACCTTCGAA+TGG - tig0025489:47424-47443 None:intergenic 40.0%
! ACCCTAACTCGTCAATTTTG+GGG + tig0025489:47685-47704 Msa1422830:CDS 40.0%
ACCCCAAAATTGACGAGTTA+GGG - tig0025489:47689-47708 None:intergenic 40.0%
TACCCCAAAATTGACGAGTT+AGG - tig0025489:47690-47709 None:intergenic 40.0%
!!! AACTCGTCAATTTTGGGGTA+TGG + tig0025489:47690-47709 Msa1422830:CDS 40.0%
!! TGAGAAATAGTTGATGGAGG+AGG - tig0025489:47736-47755 None:intergenic 40.0%
TTTGATATACAATGCGCGGT+TGG + tig0025489:47877-47896 Msa1422830:CDS 40.0%
GTCAATTGGAAAATCCAACC+AGG - tig0025489:47956-47975 None:intergenic 40.0%
! GTTGGATTTTCCAATTGACG+AGG + tig0025489:47957-47976 Msa1422830:CDS 40.0%
ATTCTTAGCGCAGCTAATCT+CGG - tig0025489:48255-48274 None:intergenic 40.0%
ACTGCGAAATAACAAACCTG+GGG - tig0025489:48381-48400 None:intergenic 40.0%
GATAACAAGAGCAGTGTGAA+AGG - tig0025489:48412-48431 None:intergenic 40.0%
! ACACTGCTCTTGTTATCTCT+TGG + tig0025489:48415-48434 Msa1422830:intron 40.0%
GCTTGAAATTTGGAAGTAGG+TGG + tig0025489:48565-48584 Msa1422830:intron 40.0%
CCTAGTAAAGTCCCAAAAGA+TGG - tig0025489:48600-48619 None:intergenic 40.0%
!!! CCATCTTTTGGGACTTTACT+AGG + tig0025489:48597-48616 Msa1422830:intron 40.0%
GGCCAAGCAACATGAATTAA+AGG - tig0025489:48734-48753 None:intergenic 40.0%
TTGGCCCTCTTTGTATATTG+TGG + tig0025489:48748-48767 Msa1422830:intron 40.0%
! CAATCTGAAGTTCTTCTCAG+AGG + tig0025489:48808-48827 Msa1422830:intron 40.0%
ATAACGTGGCAGGAAAATAG+CGG + tig0025489:48983-49002 Msa1422830:intron 40.0%
TTAGTGATGAGAGGTTGCTT+AGG + tig0025489:49352-49371 Msa1422830:intron 40.0%
AAATATCACATGAGCTGCAC+AGG - tig0025489:49460-49479 None:intergenic 40.0%
GGAAAAAACCACCACTATTG+CGG + tig0025489:49559-49578 Msa1422830:intron 40.0%
GTCAGTGTCTCAATACTCAA+TGG + tig0025489:49707-49726 Msa1422830:intron 40.0%
GAGCACACAAGAATATACAG+GGG - tig0025489:49862-49881 None:intergenic 40.0%
GGAGCACACAAGAATATACA+GGG - tig0025489:49863-49882 None:intergenic 40.0%
TGGAGCACACAAGAATATAC+AGG - tig0025489:49864-49883 None:intergenic 40.0%
GTGAGATATTGGATGGAATG+GGG - tig0025489:50260-50279 None:intergenic 40.0%
GGTGAGATATTGGATGGAAT+GGG - tig0025489:50261-50280 None:intergenic 40.0%
ATTCTGCTCAAAATCCAAGG+GGG - tig0025489:50288-50307 None:intergenic 40.0%
CATTCTGCTCAAAATCCAAG+GGG - tig0025489:50289-50308 None:intergenic 40.0%
CCATTCTGCTCAAAATCCAA+GGG - tig0025489:50290-50309 None:intergenic 40.0%
! CCTTGGATTTTGAGCAGAAT+GGG + tig0025489:50288-50307 Msa1422830:intron 40.0%
GAGTTGGCTAATAATCGAGT+TGG + tig0025489:50466-50485 Msa1422830:intron 40.0%
CATTTCAACACTACTTTCCG+AGG - tig0025489:50658-50677 None:intergenic 40.0%
! TAGGTGTCATCTGATAAGCT+GGG - tig0025489:50955-50974 None:intergenic 40.0%
! ATAGGTGTCATCTGATAAGC+TGG - tig0025489:50956-50975 None:intergenic 40.0%
ATGAGGCATGTCATCAGAAT+AGG - tig0025489:50974-50993 None:intergenic 40.0%
ATTCTGATGACATGCCTCAT+CGG + tig0025489:50974-50993 Msa1422830:CDS 40.0%
! ATTCAGGACTATGATGACGA+CGG + tig0025489:51168-51187 Msa1422830:CDS 40.0%
CCTAAATCAGAATCATCGTC+TGG - tig0025489:51207-51226 None:intergenic 40.0%
CCAGACGATGATTCTGATTT+AGG + tig0025489:51204-51223 Msa1422830:CDS 40.0%
GACGATGATTCTGATTTAGG+GGG + tig0025489:51207-51226 Msa1422830:CDS 40.0%
TATATCTTTCAGCGATCTCG+AGG + tig0025489:51269-51288 Msa1422830:CDS 40.0%
GATCTCGAGGATGATGATTA+TGG + tig0025489:51282-51301 Msa1422830:CDS 40.0%
! ACACGACTGAGGTGATTTTA+GGG + tig0025489:51358-51377 Msa1422830:three_prime_UTR 40.0%
TTGATTTCTTGTTCCGTGTG+AGG - tig0025489:51393-51412 None:intergenic 40.0%
TAACTTCGCTCACCATTATG+TGG - tig0025489:51487-51506 None:intergenic 40.0%
CCTTGCGGCAAAAAATTGTA+GGG - tig0025489:51564-51583 None:intergenic 40.0%
!! ATGGTGGATGTAATAGGGTT+CGG + tig0025489:51835-51854 Msa1422830:three_prime_UTR 40.0%
! ATCAGGTGGGTGTTGCATTA+CGG - tig0025489:47359-47378 None:intergenic 45.0%
GGTTAAAAGTTGGGATCAGG+TGG - tig0025489:47373-47392 None:intergenic 45.0%
GATTCGGAGAGAGTTTGCAA+GGG - tig0025489:47494-47513 None:intergenic 45.0%
!! TTGTTTCTAGGTGAGGTGGT+TGG - tig0025489:47568-47587 None:intergenic 45.0%
! GGGTTTGTTTGATTTCGTCG+AGG - tig0025489:47669-47688 None:intergenic 45.0%
!! GAAATAGTTGATGGAGGAGG+AGG - tig0025489:47733-47752 None:intergenic 45.0%
ATGGAACAAGGTGTGTTTCG+TGG + tig0025489:47811-47830 Msa1422830:CDS 45.0%
TGGAACAAGGTGTGTTTCGT+GGG + tig0025489:47812-47831 Msa1422830:CDS 45.0%
GGATGATCCTCAACCGAATT+CGG + tig0025489:47834-47853 Msa1422830:CDS 45.0%
TCCTGTTCTCCTTCCGAATT+CGG - tig0025489:47850-47869 None:intergenic 45.0%
ATTCGGAAGGAGAACAGGAA+AGG + tig0025489:47851-47870 Msa1422830:CDS 45.0%
TTCGGAAGGAGAACAGGAAA+GGG + tig0025489:47852-47871 Msa1422830:CDS 45.0%
TATGCATCCTGAAACCTGGT+TGG + tig0025489:47939-47958 Msa1422830:CDS 45.0%
GGAAAATCCAACCAGGTTTC+AGG - tig0025489:47949-47968 None:intergenic 45.0%
! GACGAGGAAGATGATAACGA+CGG + tig0025489:47973-47992 Msa1422830:CDS 45.0%
CAACCATAGCATGATCTCGT+TGG - tig0025489:48218-48237 None:intergenic 45.0%
AAGAGCAGTGTGAAAGGCAA+AGG - tig0025489:48406-48425 None:intergenic 45.0%
! AAATAGCGGAAGCTGCAAAG+TGG + tig0025489:48997-49016 Msa1422830:intron 45.0%
CCTTCAAGACATTGATCACG+AGG - tig0025489:49286-49305 None:intergenic 45.0%
CCTCGTGATCAATGTCTTGA+AGG + tig0025489:49283-49302 Msa1422830:intron 45.0%
AATGAAGAGAGAAGACGGAG+AGG + tig0025489:49319-49338 Msa1422830:intron 45.0%
AGAGGCAGTTTAGTGATGAG+AGG + tig0025489:49343-49362 Msa1422830:intron 45.0%
AAAAACCACCACTATTGCGG+TGG + tig0025489:49562-49581 Msa1422830:intron 45.0%
AGCGGAATTGCAATAGCGTA+TGG + tig0025489:49590-49609 Msa1422830:intron 45.0%
GCGGAATTGCAATAGCGTAT+GGG + tig0025489:49591-49610 Msa1422830:intron 45.0%
! ATTTGGGGCAACTGTGATGA+AGG - tig0025489:49617-49636 None:intergenic 45.0%
! CTTCCTGGTGTGAATTTTGG+TGG + tig0025489:50040-50059 Msa1422830:intron 45.0%
GGGTGAGATATTGGATGGAA+TGG - tig0025489:50262-50281 None:intergenic 45.0%
! CCCTTGGATTTTGAGCAGAA+TGG + tig0025489:50287-50306 Msa1422830:intron 45.0%
CCCATTCTGCTCAAAATCCA+AGG - tig0025489:50291-50310 None:intergenic 45.0%
! GGATTTTGAGCAGAATGGGA+TGG + tig0025489:50292-50311 Msa1422830:intron 45.0%
GTGAGGCTATGTTAGGACTT+AGG - tig0025489:50376-50395 None:intergenic 45.0%
AGCCAACTCATCAAAGTGCA+CGG - tig0025489:50455-50474 None:intergenic 45.0%
TCATGGTAGCCAGATCAATG+TGG + tig0025489:50833-50852 Msa1422830:CDS 45.0%
TTCCTGCATCCACATTGATC+TGG - tig0025489:50845-50864 None:intergenic 45.0%
CTATATCCGAATGTCCGATG+AGG - tig0025489:50991-51010 None:intergenic 45.0%
! ATGACGACGGTGATGATGAT+TGG + tig0025489:51181-51200 Msa1422830:CDS 45.0%
TCTGATTTAGGGGGATATCG+TGG + tig0025489:51216-51235 Msa1422830:CDS 45.0%
AACTTCAGATGACACGACTG+AGG + tig0025489:51347-51366 Msa1422830:exon 45.0%
! GACACGACTGAGGTGATTTT+AGG + tig0025489:51357-51376 Msa1422830:three_prime_UTR 45.0%
! CACGACTGAGGTGATTTTAG+GGG + tig0025489:51359-51378 Msa1422830:three_prime_UTR 45.0%
!!! CCCTACAATTTTTTGCCGCA+AGG + tig0025489:51561-51580 Msa1422830:three_prime_UTR 45.0%
GCCTTGCGGCAAAAAATTGT+AGG - tig0025489:51565-51584 None:intergenic 45.0%
!!! CAATTTTTTGCCGCAAGGCT+AGG + tig0025489:51566-51585 Msa1422830:three_prime_UTR 45.0%
! TGGTGGATGTAATAGGGTTC+GGG + tig0025489:51836-51855 Msa1422830:three_prime_UTR 45.0%
AGGATTCAGGAGAACAACAC+CGG - tig0025489:51870-51889 None:intergenic 45.0%
CTCCTGAATCCTAATTGCCT+TGG + tig0025489:51878-51897 Msa1422830:three_prime_UTR 45.0%
CACCAAGGCAATTAGGATTC+AGG - tig0025489:51883-51902 None:intergenic 45.0%
GTTGACACACCAAGGCAATT+AGG - tig0025489:51890-51909 None:intergenic 45.0%
CAAACACAGTTGACACACCA+AGG - tig0025489:51898-51917 None:intergenic 45.0%
! CGATTCGGAGAGAGTTTGCA+AGG - tig0025489:47495-47514 None:intergenic 50.0%
AGGTGAGGTGGTTGGAGATT+CGG - tig0025489:47560-47579 None:intergenic 50.0%
GATGAAACGTTGCAAGGTCG+TGG + tig0025489:47631-47650 Msa1422830:CDS 50.0%
!! ATAGTTGATGGAGGAGGAGG+AGG - tig0025489:47730-47749 None:intergenic 50.0%
GGAACAAGGTGTGTTTCGTG+GGG + tig0025489:47813-47832 Msa1422830:CDS 50.0%
GATCCTCAACCGAATTCGGA+AGG + tig0025489:47838-47857 Msa1422830:CDS 50.0%
TCTCCTTCCGAATTCGGTTG+AGG - tig0025489:47844-47863 None:intergenic 50.0%
ACCGAATTCGGAAGGAGAAC+AGG + tig0025489:47846-47865 Msa1422830:CDS 50.0%
ATGCGCGGTTGGAATTACTG+AGG + tig0025489:47888-47907 Msa1422830:CDS 50.0%
TCGCTATGCATCCTGAAACC+TGG + tig0025489:47935-47954 Msa1422830:CDS 50.0%
AGCATGATCTCGTTGGTCCT+CGG - tig0025489:48211-48230 None:intergenic 50.0%
GGACCAACGAGATCATGCTA+TGG + tig0025489:48212-48231 Msa1422830:CDS 50.0%
!! TGAGGTTTTGTCTACACCCC+AGG + tig0025489:48362-48381 Msa1422830:CDS 50.0%
CACACGAGAGAGAACTACAG+AGG - tig0025489:48633-48652 None:intergenic 50.0%
!! GAAATAGCGGATAACGTGGC+AGG + tig0025489:48973-48992 Msa1422830:intron 50.0%
ATGAGAGGTTGCTTAGGTCG+TGG + tig0025489:49358-49377 Msa1422830:intron 50.0%
TGAGAGGTTGCTTAGGTCGT+GGG + tig0025489:49359-49378 Msa1422830:intron 50.0%
GTTGAGTCGGTGATGACATG+AGG - tig0025489:49404-49423 None:intergenic 50.0%
ACTATTGCGGTGGTAGGTAG+CGG + tig0025489:49572-49591 Msa1422830:intron 50.0%
GTGGTATAGCGGCGTTATAC+CGG + tig0025489:49651-49670 Msa1422830:intron 50.0%
GAGCCACCAAAATTCACACC+AGG - tig0025489:50046-50065 None:intergenic 50.0%
TGCTCAAAATCCAAGGGGGT+GGG - tig0025489:50284-50303 None:intergenic 50.0%
GACCGTGCACTTTGATGAGT+TGG + tig0025489:50450-50469 Msa1422830:intron 50.0%
AGCCAGATCAATGTGGATGC+AGG + tig0025489:50840-50859 Msa1422830:CDS 50.0%
GACATGCCTCATCGGACATT+CGG + tig0025489:50982-51001 Msa1422830:CDS 50.0%
!! TGAGGTGATTTTAGGGGCAC+TGG + tig0025489:51365-51384 Msa1422830:three_prime_UTR 50.0%
!!! TTTTTTGCCGCAAGGCTAGG+TGG + tig0025489:51569-51588 Msa1422830:three_prime_UTR 50.0%
! TTTTTGCCGCAAGGCTAGGT+GGG + tig0025489:51570-51589 Msa1422830:three_prime_UTR 50.0%
!! TTCAAACCCACCTAGCCTTG+CGG - tig0025489:51579-51598 None:intergenic 50.0%
GATTCAGGAGAACAACACCG+GGG - tig0025489:51868-51887 None:intergenic 50.0%
GGATTCAGGAGAACAACACC+GGG - tig0025489:51869-51888 None:intergenic 50.0%
! AGGTGGGTGTTGCATTACGG+TGG - tig0025489:47356-47375 None:intergenic 55.0%
CGCGGTTGGAATTACTGAGG+AGG + tig0025489:47891-47910 Msa1422830:CDS 55.0%
GAGAGGTTGCTTAGGTCGTG+GGG + tig0025489:49360-49379 Msa1422830:intron 55.0%
TTGCTTAGGTCGTGGGGTTG+AGG + tig0025489:49366-49385 Msa1422830:intron 55.0%
TGCTTAGGTCGTGGGGTTGA+GGG + tig0025489:49367-49386 Msa1422830:intron 55.0%
ACCACCACTATTGCGGTGGT+AGG + tig0025489:49566-49585 Msa1422830:intron 55.0%
ACCTACCACCGCAATAGTGG+TGG - tig0025489:49570-49589 None:intergenic 55.0%
GCTACCTACCACCGCAATAG+TGG - tig0025489:49573-49592 None:intergenic 55.0%
GGTGGGGGTGAGATATTGGA+TGG - tig0025489:50267-50286 None:intergenic 55.0%
CTCAAAATCCAAGGGGGTGG+GGG - tig0025489:50282-50301 None:intergenic 55.0%
GCTCAAAATCCAAGGGGGTG+GGG - tig0025489:50283-50302 None:intergenic 55.0%
CTGCTCAAAATCCAAGGGGG+TGG - tig0025489:50285-50304 None:intergenic 55.0%
! GCAAGGCTAGGTGGGTTTGA+AGG + tig0025489:51578-51597 Msa1422830:three_prime_UTR 55.0%
! TAGGGTTCGGGTTTCTACCC+CGG + tig0025489:51848-51867 Msa1422830:three_prime_UTR 55.0%
GGCAGGGTGACCGACTGATA+AGG + tig0025489:48677-48696 Msa1422830:intron 60.0%
GAGAGAAGACGGAGAGGCAG+AGG + tig0025489:49325-49344 Msa1422830:intron 60.0%
AGGGGGTGGGGGTGAGATAT+TGG - tig0025489:50271-50290 None:intergenic 60.0%
ATATCTCACCCCCACCCCCT+TGG + tig0025489:50271-50290 Msa1422830:intron 60.0%
!! AGGGGCACTGGAACCTCACA+CGG + tig0025489:51377-51396 Msa1422830:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
tig0025489 gene 47332 51945 47332 ID=Msa1422830;Name=Msa1422830
tig0025489 mRNA 47332 51945 47332 ID=Msa1422830-mRNA-1;Parent=Msa1422830;Name=Msa1422830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|3|598|409
tig0025489 exon 47332 47994 47332 ID=Msa1422830-mRNA-1:exon:2860;Parent=Msa1422830-mRNA-1
tig0025489 exon 48196 48383 48196 ID=Msa1422830-mRNA-1:exon:2861;Parent=Msa1422830-mRNA-1
tig0025489 exon 50832 51945 50832 ID=Msa1422830-mRNA-1:exon:2862;Parent=Msa1422830-mRNA-1
tig0025489 five_prime_UTR 47332 47468 47332 ID=Msa1422830-mRNA-1:five_prime_utr;Parent=Msa1422830-mRNA-1
tig0025489 CDS 47469 47994 47469 ID=Msa1422830-mRNA-1:cds;Parent=Msa1422830-mRNA-1
tig0025489 CDS 48196 48383 48196 ID=Msa1422830-mRNA-1:cds;Parent=Msa1422830-mRNA-1
tig0025489 CDS 50832 51347 50832 ID=Msa1422830-mRNA-1:cds;Parent=Msa1422830-mRNA-1
tig0025489 three_prime_UTR 51348 51945 51348 ID=Msa1422830-mRNA-1:three_prime_utr;Parent=Msa1422830-mRNA-1
Gene Sequence

>Msa1422830

ATGTCATCATGGTTTGCTCGTTCCCTTGCAAACTCTCTCCGAATCGATGATGATGATGATGATGGTGACATTCAAAACGACGTCGTAACCGAATCTCCAACCACCTCACCTAGAAACAATAATAATAATGCAGATGAATCAGAAGAACAAGAAGAAAATAATGATGAAACGTTGCAAGGTCGTGGTGTTAAAGAAGACCTCGACGAAATCAAACAAACCCTAACTCGTCAATTTTGGGGTATGGCTTCTTTTCTCGCTCCTCCTCCTCCTCCATCAACTATTTCTCAATCTCAACAACAACAGCAAGTTGATGCCGATGTAATTTCAAATCAAAATTCTGAAATGGAACAAGGTGTGTTTCGTGGGGATGATCCTCAACCGAATTCGGAAGGAGAACAGGAAAGGGAATTTGATATACAATGCGCGGTTGGAATTACTGAGGAGGTTTTGACTTTTGCATTGAATATCGCTATGCATCCTGAAACCTGGTTGGATTTTCCAATTGACGAGGAAGATGATAACGACGATTTTGAAATGTCCGAGGACCAACGAGATCATGCTATGGTTGTTGAAAGGCTTGCTCCGAGATTAGCTGCGCTAAGAATTGAATTGTGCCCTTGTCATATGAGTGAAAGTTACTTTTGGAAAGTCTATTTTGTACTTTTGCATTCAAGGCTTAATAAACAAGATTCTGAGGTTTTGTCTACACCCCAGGTCATGGTAGCCAGATCAATGTGGATGCAGGAATTGCAGAAACAAACAAAGCCTGAATTTGAAATTTTCGGAAGAAGTGATCTCTACTCAAGAGACAATGCTCAGCATCATGATTCTACTCCCAGCTTATCAGATGACACCTATTCTGATGACATGCCTCATCGGACATTCGGATATAGAACAACTTCTTTGTCTGTGATGGCAGATAATGAGTCTGAAAAGTACACAATTGAAAGTTCTGGATCACATTTATCAGATAAGTCGGTTATTGAGGAAAATCCAAGTAATAAAACTGAAAACAAAGATCTAAAAAGTGGTCGAGCTTCTCAAATTATGATTCAGGACTATGATGACGACGGTGATGATGATTGGCCAGACGATGATTCTGATTTAGGGGGATATCGTGGAACAGCGCTCCCTATTGTGAATGAAGAAGATATATCTTTCAGCGATCTCGAGGATGATGATTATGGCATTAAACATGTTAGTAGCAATTCAGATTCAAAGGTGGTGTGA
Protein sequence

>Msa1422830

MSSWFARSLANSLRIDDDDDDGDIQNDVVTESPTTSPRNNNNNADESEEQEENNDETLQGRGVKEDLDEIKQTLTRQFWGMASFLAPPPPPSTISQSQQQQQVDADVISNQNSEMEQGVFRGDDPQPNSEGEQEREFDIQCAVGITEEVLTFALNIAMHPETWLDFPIDEEDDNDDFEMSEDQRDHAMVVERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKQDSEVLSTPQVMVARSMWMQELQKQTKPEFEIFGRSDLYSRDNAQHHDSTPSLSDDTYSDDMPHRTFGYRTTSLSVMADNESEKYTIESSGSHLSDKSVIEENPSNKTENKDLKSGRASQIMIQDYDDDGDDDWPDDDSDLGGYRGTALPIVNEEDISFSDLEDDDYGIKHVSSNSDSKVV*