AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381360 MtrunA17_Chr3g0135001 89.573 422 23 7 1 405 1 418 0.0 681
Msa0381360 MtrunA17_Chr5g0400951 36.321 424 241 8 3 402 2 420 2.03e-58 197
Msa0381360 MtrunA17_Chr4g0064381 37.600 125 74 3 126 249 114 235 2.53e-21 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381360 AT1G10720.1 41.995 381 155 11 53 390 51 408 3.18e-67 219
Msa0381360 AT3G49800.1 36.385 426 225 9 3 390 2 419 4.15e-63 209
Msa0381360 AT5G65910.1 35.629 421 199 12 3 390 2 383 4.59e-52 180
Msa0381360 AT2G10950.1 34.975 203 107 7 60 249 25 215 4.25e-24 102
Msa0381360 AT2G10950.2 34.975 203 107 7 60 249 25 215 4.25e-24 102
Msa0381360 AT2G10950.3 34.975 203 107 7 60 249 25 215 4.25e-24 102

Find 118 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGACGATGATTCTGATTT+AGG 0.116038 3_1:-83434098 Msa0381360:CDS
AAACCCTAACTCGTCAATTT+TGG 0.118472 3_1:-83437610 Msa0381360:CDS
CTTCCGAAAATTTCAAATTC+AGG 0.205294 3_1:+83434419 None:intergenic
TTATTTATGGTGGATGTAAT+AGG 0.210532 3_1:-83433473 Msa0381360:three_prime_UTR
GGAAAATCCAACCAGGTTTC+AGG 0.211999 3_1:+83437353 None:intergenic
GAAATATGAGCATCTATTTC+AGG 0.220511 3_1:-83433591 Msa0381360:three_prime_UTR
GATTCGGTTACGACGTCTTT+TGG 0.234651 3_1:+83437752 None:intergenic
GCATTATTATTATTGTTTCT+AGG 0.244863 3_1:+83437716 None:intergenic
TATACATTCTTGCACCTATA+TGG 0.263855 3_1:+83433548 None:intergenic
AGCTTCTCAAATTATGATTC+AGG 0.278846 3_1:-83434150 Msa0381360:CDS
TCCTGTTCTCCTTCCGAATT+CGG 0.293303 3_1:+83437452 None:intergenic
CAGACGATGATTCTGATTTA+GGG 0.320175 3_1:-83434097 Msa0381360:CDS
GTTGACACACCAAGGCAATT+AGG 0.324414 3_1:+83433415 None:intergenic
ATATGAGTGAAAGTTACTTT+TGG 0.337115 3_1:-83437010 Msa0381360:CDS
ATATCTTCTTCATTCACAAT+AGG 0.340594 3_1:+83434053 None:intergenic
AATTATTGAAATAATCACTA+TGG 0.344835 3_1:+83433380 None:intergenic
TATTTATGGTGGATGTAATA+GGG 0.355629 3_1:-83433472 Msa0381360:three_prime_UTR
TGGTGGATGTAATAGGGTTC+GGG 0.359587 3_1:-83433466 Msa0381360:three_prime_UTR
TACCCCAAAATTGACGAGTT+AGG 0.366692 3_1:+83437606 None:intergenic
CACCAAGGCAATTAGGATTC+AGG 0.370842 3_1:+83433422 None:intergenic
GATCTCGAGGATGATGATTA+TGG 0.375938 3_1:-83434020 Msa0381360:CDS
AAGTACACAATTGAAAGTTC+TGG 0.380859 3_1:-83434251 Msa0381360:CDS
AAAGAGAATTGCCAGATGTT+TGG 0.381680 3_1:-83433889 Msa0381360:three_prime_UTR
TTATCATCTTCCTCGTCAAT+TGG 0.385268 3_1:+83437332 None:intergenic
ATGGTGGATGTAATAGGGTT+CGG 0.385725 3_1:-83433467 Msa0381360:three_prime_UTR
TTCAAATCAAAATTCTGAAA+TGG 0.387588 3_1:-83437507 Msa0381360:CDS
AGGTGAGGTGGTTGGAGATT+CGG 0.393384 3_1:+83437736 None:intergenic
ACCCCAAAATTGACGAGTTA+GGG 0.399070 3_1:+83437607 None:intergenic
TATCTTCTTCATTCACAATA+GGG 0.403821 3_1:+83434054 None:intergenic
AAAACATCAAACATGGATAC+TGG 0.409853 3_1:-83433864 Msa0381360:three_prime_UTR
GAGAGAAGAGGTTAAAAGTT+GGG 0.412323 3_1:+83437908 None:intergenic
ATCAGGTGGGTGTTGCATTA+CGG 0.415921 3_1:+83437931 None:intergenic
GGATGATCCTCAACCGAATT+CGG 0.422197 3_1:-83437465 Msa0381360:CDS
CAACAACAACAGCAAGTTGA+TGG 0.425576 3_1:-83437539 Msa0381360:CDS
GACATGCCTCATCGGACATT+CGG 0.431916 3_1:-83434320 Msa0381360:CDS
TGAGAGAAGAGGTTAAAAGT+TGG 0.433249 3_1:+83437907 None:intergenic
ACCGAATTCGGAAGGAGAAC+AGG 0.434653 3_1:-83437453 Msa0381360:CDS
ATCAGATAAGTCGGTTATTG+AGG 0.438020 3_1:-83434219 Msa0381360:CDS
GTATTTCAAAACAACTCAAA+TGG 0.451191 3_1:-83433693 Msa0381360:three_prime_UTR
AGAGGTTAAAAGTTGGGATC+AGG 0.455029 3_1:+83437914 None:intergenic
TGAGATTGAGAAATAGTTGA+TGG 0.458566 3_1:+83437560 None:intergenic
CTCCTGAATCCTAATTGCCT+TGG 0.461505 3_1:-83433424 Msa0381360:three_prime_UTR
CACCATCATCATCATCGATT+CGG 0.461884 3_1:+83437780 None:intergenic
TCTCCTTCCGAATTCGGTTG+AGG 0.463205 3_1:+83437458 None:intergenic
ATAGGTGTCATCTGATAAGC+TGG 0.468819 3_1:+83434349 None:intergenic
GATATCGAAAACATGGTTGT+GGG 0.472505 3_1:-83433616 Msa0381360:three_prime_UTR
AGATATCGAAAACATGGTTG+TGG 0.473074 3_1:-83433617 Msa0381360:three_prime_UTR
TTCCTGCATCCACATTGATC+TGG 0.490551 3_1:+83434460 None:intergenic
TGGAACAAGGTGTGTTTCGT+GGG 0.498516 3_1:-83437487 Msa0381360:CDS
ATGAGGCATGTCATCAGAAT+AGG 0.499437 3_1:+83434331 None:intergenic
AGCCAGATCAATGTGGATGC+AGG 0.502125 3_1:-83434462 Msa0381360:CDS
AAATATGAGCATCTATTTCA+GGG 0.503499 3_1:-83433590 Msa0381360:three_prime_UTR
AACAACTTCTTTGTCTGTGA+TGG 0.504969 3_1:-83434291 Msa0381360:CDS
ATTATTATTGTTTCTAGGTG+AGG 0.514535 3_1:+83437721 None:intergenic
ATTCTTAGCGCAGCTAATCT+CGG 0.515912 3_1:+83437050 None:intergenic
ATTATTGTTTCTAGGTGAGG+TGG 0.517111 3_1:+83437724 None:intergenic
TTCGGAAGGAGAACAGGAAA+GGG 0.519132 3_1:-83437447 Msa0381360:CDS
TAACTTCGCTCACCATTATG+TGG 0.525605 3_1:+83433818 None:intergenic
TTTGTTGTTATTGAGAGAAG+AGG 0.526195 3_1:+83437896 None:intergenic
GAGATTGAGAAATAGTTGAT+GGG 0.532967 3_1:+83437561 None:intergenic
ATGACGACGGTGATGATGAT+TGG 0.533375 3_1:-83434121 Msa0381360:CDS
CCTAAATCAGAATCATCGTC+TGG 0.535306 3_1:+83434098 None:intergenic
TTGATTTCTTGTTCCGTGTG+AGG 0.537835 3_1:+83433912 None:intergenic
CTCCGAATCGATGATGATGA+TGG 0.541603 3_1:-83437782 Msa0381360:CDS
CGATTCGGAGAGAGTTTGCA+AGG 0.544073 3_1:+83437795 None:intergenic
AGATTGAGAAATAGTTGATG+GGG 0.544797 3_1:+83437562 None:intergenic
TAGGGTTCGGGTTTCTACCC+CGG 0.547800 3_1:-83433454 Msa0381360:three_prime_UTR
AGCATGATCTCGTTGGTCCT+CGG 0.550779 3_1:+83437094 None:intergenic
TTTGATATACAATGCGCGGT+TGG 0.551967 3_1:-83437422 Msa0381360:CDS
GCAAGGCTAGGTGGGTTTGA+AGG 0.553989 3_1:-83433724 Msa0381360:three_prime_UTR
TTGTTTCTAGGTGAGGTGGT+TGG 0.556311 3_1:+83437728 None:intergenic
GGTTAAAAGTTGGGATCAGG+TGG 0.557489 3_1:+83437917 None:intergenic
ATCACATTTATCAGATAAGT+CGG 0.557852 3_1:-83434228 Msa0381360:CDS
TAGTAGCAATTCAGATTCAA+AGG 0.559727 3_1:-83433985 Msa0381360:CDS
GCTTAATAAACAAGATTCTG+AGG 0.560595 3_1:-83436958 Msa0381360:CDS
AGGGGCACTGGAACCTCACA+CGG 0.560694 3_1:-83433925 Msa0381360:three_prime_UTR
AAATGCTGTGATGATATTTG+AGG 0.563683 3_1:-83433792 Msa0381360:three_prime_UTR
TCGCTATGCATCCTGAAACC+TGG 0.573694 3_1:-83437364 Msa0381360:CDS
CGCGGTTGGAATTACTGAGG+AGG 0.575478 3_1:-83437408 Msa0381360:CDS
ATGGAACAAGGTGTGTTTCG+TGG 0.577001 3_1:-83437488 Msa0381360:CDS
CAAAATTCTGAAATGGAACA+AGG 0.577149 3_1:-83437500 Msa0381360:CDS
AATAATGATGAAACGTTGCA+AGG 0.577943 3_1:-83437668 Msa0381360:CDS
ATTCGGAAGGAGAACAGGAA+AGG 0.580219 3_1:-83437448 Msa0381360:CDS
ATTCTGATGACATGCCTCAT+CGG 0.584652 3_1:-83434328 Msa0381360:CDS
ATCATGCTATGGTTGTTGAA+AGG 0.587242 3_1:-83437079 Msa0381360:CDS
GATTGAGAAATAGTTGATGG+GGG 0.587582 3_1:+83437563 None:intergenic
CAAACACAGTTGACACACCA+AGG 0.593634 3_1:+83433407 None:intergenic
GATGAAACGTTGCAAGGTCG+TGG 0.598947 3_1:-83437662 Msa0381360:CDS
AGGATTCAGGAGAACAACAC+CGG 0.602635 3_1:+83433435 None:intergenic
TATATCTTTCAGCGATCTCG+AGG 0.605970 3_1:-83434033 Msa0381360:CDS
AGACGATGATTCTGATTTAG+GGG 0.611211 3_1:-83434096 Msa0381360:CDS
TTGATATTTGATGACAAACA+AGG 0.613012 3_1:+83433518 None:intergenic
ACAAACAATAAACCATTCGA+AGG 0.617726 3_1:-83437878 Msa0381360:five_prime_UTR
CAACCATAGCATGATCTCGT+TGG 0.618660 3_1:+83437087 None:intergenic
GGAATTTGATATACAATGCG+CGG 0.621961 3_1:-83437426 Msa0381360:CDS
GATCCTCAACCGAATTCGGA+AGG 0.622984 3_1:-83437461 Msa0381360:CDS
GGATTCAGGAGAACAACACC+GGG 0.625463 3_1:+83433436 None:intergenic
GACGATGATTCTGATTTAGG+GGG 0.629733 3_1:-83434095 Msa0381360:CDS
TATGCATCCTGAAACCTGGT+TGG 0.632143 3_1:-83437360 Msa0381360:CDS
GTCAATTGGAAAATCCAACC+AGG 0.642583 3_1:+83437346 None:intergenic
GTTAAAAGTTGGGATCAGGT+GGG 0.652987 3_1:+83437918 None:intergenic
TAACTTTCACTCATATGACA+AGG 0.653724 3_1:+83437017 None:intergenic
GGACCAACGAGATCATGCTA+TGG 0.655051 3_1:-83437090 Msa0381360:CDS
GGGTTTGTTTGATTTCGTCG+AGG 0.657504 3_1:+83437627 None:intergenic
TAGGTGTCATCTGATAAGCT+GGG 0.666888 3_1:+83434350 None:intergenic
AGGTGGGTGTTGCATTACGG+TGG 0.672727 3_1:+83437934 None:intergenic
AACTTTCACTCATATGACAA+GGG 0.678075 3_1:+83437018 None:intergenic
TAGCAATTCAGATTCAAAGG+TGG 0.680098 3_1:-83433982 Msa0381360:CDS
TTCAAACCCACCTAGCCTTG+CGG 0.682308 3_1:+83433726 None:intergenic
GATTCGGAGAGAGTTTGCAA+GGG 0.683544 3_1:+83437796 None:intergenic
CTATATCCGAATGTCCGATG+AGG 0.695034 3_1:+83434314 None:intergenic
TCATGGTAGCCAGATCAATG+TGG 0.707205 3_1:-83434469 Msa0381360:CDS
ATTCAGGACTATGATGACGA+CGG 0.722996 3_1:-83434134 Msa0381360:CDS
GGAACAAGGTGTGTTTCGTG+GGG 0.730599 3_1:-83437486 Msa0381360:CDS
GACGAGGAAGATGATAACGA+CGG 0.733347 3_1:-83437326 Msa0381360:intron
ATGCGCGGTTGGAATTACTG+AGG 0.743287 3_1:-83437411 Msa0381360:CDS
AACTTCAGATGACACGACTG+AGG 0.758277 3_1:-83433955 Msa0381360:three_prime_UTR
GATTCAGGAGAACAACACCG+GGG 0.849144 3_1:+83433437 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATCAGAAA+TGG + chr3_1:83434124-83434143 None:intergenic 10.0%
!!! ATATTTTTAATTTTACCATT+AGG - chr3_1:83435506-83435525 Msa0381360:intron 10.0%
!!! TATTTTTAATTTTACCATTA+GGG - chr3_1:83435507-83435526 Msa0381360:intron 10.0%
!!! TGATTTTTTTCATTTATTTA+TGG - chr3_1:83437848-83437867 Msa0381360:five_prime_UTR 10.0%
!! TTTATGTATTTATAATTGCT+AGG - chr3_1:83434512-83434531 Msa0381360:intron 15.0%
!! AAAAAAAAATTCCTGATTAT+TGG - chr3_1:83434919-83434938 Msa0381360:intron 15.0%
!! ATTAAAACTCAAAATCTAAA+TGG - chr3_1:83435152-83435171 Msa0381360:intron 15.0%
!!! ATTTTTAATTTTACCATTAG+GGG - chr3_1:83435508-83435527 Msa0381360:intron 15.0%
!!! TTTTTTTCATTTATTTATGG+TGG - chr3_1:83437851-83437870 Msa0381360:five_prime_UTR 15.0%
!! AATTATTGAAATAATCACTA+TGG + chr3_1:83437957-83437976 None:intergenic 15.0%
!! AAAAACAAAAAATGTCATCA+TGG - chr3_1:83433505-83433524 Msa0381360:three_prime_UTR 20.0%
!!! GCATTATTATTATTGTTTCT+AGG + chr3_1:83433621-83433640 None:intergenic 20.0%
!!! TTCAAATCAAAATTCTGAAA+TGG - chr3_1:83433827-83433846 Msa0381360:three_prime_UTR 20.0%
!! ATAATAATGTGCTAGATTAT+TGG - chr3_1:83434136-83434155 Msa0381360:CDS 20.0%
!! TTGCTTGTAAATTATAAACT+AGG - chr3_1:83434688-83434707 Msa0381360:intron 20.0%
!! TTAATGATCTGCTATTAATT+GGG + chr3_1:83434972-83434991 None:intergenic 20.0%
!! TTTAATGATCTGCTATTAAT+TGG + chr3_1:83434973-83434992 None:intergenic 20.0%
!!! ATTCACTTTTAATTTGTTTC+TGG + chr3_1:83435134-83435153 None:intergenic 20.0%
!! GAAATAAAATAATGTTGAGT+CGG + chr3_1:83435449-83435468 None:intergenic 20.0%
!!! TTTTTAATTTTACCATTAGG+GGG - chr3_1:83435509-83435528 Msa0381360:intron 20.0%
!! ATTTAAATTTCTACTTCAGT+TGG - chr3_1:83435775-83435794 Msa0381360:intron 20.0%
!! TTTAAATTTCTACTTCAGTT+GGG - chr3_1:83435776-83435795 Msa0381360:intron 20.0%
!! GAATTAGAAGAAATCTTAAA+AGG + chr3_1:83435937-83435956 None:intergenic 20.0%
!! TAATCGTGTGTATTATAATT+TGG + chr3_1:83436115-83436134 None:intergenic 20.0%
!!! TTAAAAACTTATAACTTGTG+AGG + chr3_1:83436425-83436444 None:intergenic 20.0%
!! TAAAGTGAAAGATTTGTAAT+TGG - chr3_1:83436576-83436595 Msa0381360:intron 20.0%
!! AAAGTGAAAGATTTGTAATT+GGG - chr3_1:83436577-83436596 Msa0381360:intron 20.0%
!!! TATTTTAAAGCTACGATAAT+GGG - chr3_1:83436801-83436820 Msa0381360:intron 20.0%
!!! TTGTTTTCAGTTTTATTACT+TGG + chr3_1:83437146-83437165 None:intergenic 20.0%
!!! TTTTTTAGATATCGAAAACA+TGG - chr3_1:83437711-83437730 Msa0381360:CDS 20.0%
!!! ATTATTATTGTTTCTAGGTG+AGG + chr3_1:83433616-83433635 None:intergenic 25.0%
!!! ATATGAGTGAAAGTTACTTT+TGG - chr3_1:83434324-83434343 Msa0381360:CDS 25.0%
!! ATTTTGTACTTTTGCATTCA+AGG - chr3_1:83434354-83434373 Msa0381360:CDS 25.0%
! TTGCTATCTAATAGAAATAC+TGG + chr3_1:83434572-83434591 None:intergenic 25.0%
! TTGTAAATTATAAACTAGGC+AGG - chr3_1:83434692-83434711 Msa0381360:intron 25.0%
! TGTAAATTATAAACTAGGCA+GGG - chr3_1:83434693-83434712 Msa0381360:intron 25.0%
! AATTAAGCATCATGCTTTAT+CGG + chr3_1:83435090-83435109 None:intergenic 25.0%
! AGTTCAAAACAACTAATTAC+TGG - chr3_1:83435176-83435195 Msa0381360:intron 25.0%
! TGAAGATAATGATTATGTTG+TGG + chr3_1:83435253-83435272 None:intergenic 25.0%
!!! ATCTTCATTTTTAGATAGTG+AGG - chr3_1:83435266-83435285 Msa0381360:intron 25.0%
!! TTTTTCCATATTTGTGATAG+CGG + chr3_1:83435578-83435597 None:intergenic 25.0%
! ACTATTACATATTGGGATTT+GGG + chr3_1:83435665-83435684 None:intergenic 25.0%
! CTATACCACTATTACATATT+GGG + chr3_1:83435672-83435691 None:intergenic 25.0%
! AATATGTAATAGTGGTATAG+CGG - chr3_1:83435672-83435691 Msa0381360:intron 25.0%
! GATAACAAAAACATTTAGAG+AGG + chr3_1:83435719-83435738 None:intergenic 25.0%
! GGCAAAAGAAATTTAGAAAA+TGG + chr3_1:83435916-83435935 None:intergenic 25.0%
!!! TTCCAGATTTTGATTGTTAT+TGG - chr3_1:83435996-83436015 Msa0381360:intron 25.0%
! TTCCAATAACAATCAAAATC+TGG + chr3_1:83436001-83436020 None:intergenic 25.0%
! AATCCAAGAATAGAGATTAT+TGG - chr3_1:83436019-83436038 Msa0381360:intron 25.0%
! TTTCCAATAATCTCTATTCT+TGG + chr3_1:83436025-83436044 None:intergenic 25.0%
! TCATATGTTAATGCCTAATA+CGG - chr3_1:83436155-83436174 Msa0381360:intron 25.0%
! ATATGTTTGGATTGATGAAA+AGG - chr3_1:83436178-83436197 Msa0381360:intron 25.0%
! TATGTTTGGATTGATGAAAA+GGG - chr3_1:83436179-83436198 Msa0381360:intron 25.0%
! TCGTTAAACATTCTATTGTT+TGG - chr3_1:83436216-83436235 Msa0381360:intron 25.0%
! AATAAAGCAAATATTCTCCA+TGG + chr3_1:83436633-83436652 None:intergenic 25.0%
!!! TATTTGCTTTATTTGAAGAG+AGG - chr3_1:83436640-83436659 Msa0381360:intron 25.0%
!! AAATGTTCCTTTTCTTAGTT+TGG - chr3_1:83436705-83436724 Msa0381360:intron 25.0%
!!! GTATTTTAAAGCTACGATAA+TGG - chr3_1:83436800-83436819 Msa0381360:intron 25.0%
!!! ATCTTAGTTTTAACTTTTGC+AGG - chr3_1:83436842-83436861 Msa0381360:intron 25.0%
!!! AAGCCTGAATTTGAAATTTT+CGG - chr3_1:83436912-83436931 Msa0381360:intron 25.0%
! ATCACATTTATCAGATAAGT+CGG - chr3_1:83437106-83437125 Msa0381360:CDS 25.0%
! GAAAACAAAGATCTAAAAAG+TGG - chr3_1:83437158-83437177 Msa0381360:intron 25.0%
! TATCTTCTTCATTCACAATA+GGG + chr3_1:83437283-83437302 None:intergenic 25.0%
! ATATCTTCTTCATTCACAAT+AGG + chr3_1:83437284-83437303 None:intergenic 25.0%
! TTTGGTAAAAACATCAAACA+TGG - chr3_1:83437463-83437482 Msa0381360:CDS 25.0%
!!! TATCTTTTTTGTCCACATAA+TGG - chr3_1:83437504-83437523 Msa0381360:CDS 25.0%
! GTATTTCAAAACAACTCAAA+TGG - chr3_1:83437641-83437660 Msa0381360:CDS 25.0%
! AAATATGAGCATCTATTTCA+GGG - chr3_1:83437744-83437763 Msa0381360:CDS 25.0%
!!! TTTGTTTTAAGACACCATAT+AGG - chr3_1:83437772-83437791 Msa0381360:CDS 25.0%
!! TTGATATTTGATGACAAACA+AGG + chr3_1:83437819-83437838 None:intergenic 25.0%
!!! TTATTTATGGTGGATGTAAT+AGG - chr3_1:83437861-83437880 Msa0381360:five_prime_UTR 25.0%
!!! TATTTATGGTGGATGTAATA+GGG - chr3_1:83437862-83437881 Msa0381360:five_prime_UTR 25.0%
!! TTTGTTGTTATTGAGAGAAG+AGG + chr3_1:83433441-83433460 None:intergenic 30.0%
ACAAACAATAAACCATTCGA+AGG - chr3_1:83433456-83433475 Msa0381360:three_prime_UTR 30.0%
AATAATGATGAAACGTTGCA+AGG - chr3_1:83433666-83433685 Msa0381360:three_prime_UTR 30.0%
! AGATTGAGAAATAGTTGATG+GGG + chr3_1:83433775-83433794 None:intergenic 30.0%
GAGATTGAGAAATAGTTGAT+GGG + chr3_1:83433776-83433795 None:intergenic 30.0%
TGAGATTGAGAAATAGTTGA+TGG + chr3_1:83433777-83433796 None:intergenic 30.0%
!! CAAAATTCTGAAATGGAACA+AGG - chr3_1:83433834-83433853 Msa0381360:three_prime_UTR 30.0%
TTCATTCATAGCTACAGAAA+TGG + chr3_1:83434181-83434200 None:intergenic 30.0%
AACTTTCACTCATATGACAA+GGG + chr3_1:83434319-83434338 None:intergenic 30.0%
TAACTTTCACTCATATGACA+AGG + chr3_1:83434320-83434339 None:intergenic 30.0%
GCTTAATAAACAAGATTCTG+AGG - chr3_1:83434376-83434395 Msa0381360:CDS 30.0%
AAGGAATAAATGCAACAGTA+AGG + chr3_1:83434747-83434766 None:intergenic 30.0%
TTCCTTTAATTCATGTTGCT+TGG - chr3_1:83434761-83434780 Msa0381360:intron 30.0%
TAAGCCACAATATACAAAGA+GGG + chr3_1:83434787-83434806 None:intergenic 30.0%
TTAAGCCACAATATACAAAG+AGG + chr3_1:83434788-83434807 None:intergenic 30.0%
TTCTCAGAGGTTTGAATTTA+TGG - chr3_1:83434853-83434872 Msa0381360:intron 30.0%
AATGAGTTCTACCAATAATC+AGG + chr3_1:83434933-83434952 None:intergenic 30.0%
AAATCCGCTATAAGAAATAG+CGG - chr3_1:83434992-83435011 Msa0381360:intron 30.0%
!! TTATCCGCTATTTCTTATAG+CGG + chr3_1:83434999-83435018 None:intergenic 30.0%
TAATGATTATGTTGTGGAAG+AGG + chr3_1:83435247-83435266 None:intergenic 30.0%
!! GGATTCATTTTAGAAGTTGA+AGG + chr3_1:83435297-83435316 None:intergenic 30.0%
TATGAAATGAAGAGAGAAGA+CGG - chr3_1:83435346-83435365 Msa0381360:intron 30.0%
AATAACCGCTATCACAAATA+TGG - chr3_1:83435570-83435589 Msa0381360:intron 30.0%
CTATTACATATTGGGATTTG+GGG + chr3_1:83435664-83435683 None:intergenic 30.0%
CACTATTACATATTGGGATT+TGG + chr3_1:83435666-83435685 None:intergenic 30.0%
CAAATCCCAATATGTAATAG+TGG - chr3_1:83435664-83435683 Msa0381360:intron 30.0%
GCTATACCACTATTACATAT+TGG + chr3_1:83435673-83435692 None:intergenic 30.0%
!! TTAGAGAGGTGTTAAATAAC+CGG + chr3_1:83435705-83435724 None:intergenic 30.0%
! AAGCAATTTTAGATACAGAC+TGG - chr3_1:83435970-83435989 Msa0381360:intron 30.0%
ATTGTTATAGTCTTTCTTCC+TGG - chr3_1:83436057-83436076 Msa0381360:intron 30.0%
AATCCAAACATATCCGTATT+AGG + chr3_1:83436171-83436190 None:intergenic 30.0%
GATTGATGAAAAGGGATAAA+TGG - chr3_1:83436187-83436206 Msa0381360:intron 30.0%
ATGAAAAGGGATAAATGGAT+GGG - chr3_1:83436192-83436211 Msa0381360:intron 30.0%
TTGTTTGGATTGTTCAGAAT+AGG - chr3_1:83436231-83436250 Msa0381360:intron 30.0%
AAGAATGCAACATGATTTCA+TGG - chr3_1:83436260-83436279 Msa0381360:intron 30.0%
TTAGGACTTAGGATATCTAA+TGG + chr3_1:83436397-83436416 None:intergenic 30.0%
!! GATCTATCATTGTTTTACCA+TGG - chr3_1:83436613-83436632 Msa0381360:intron 30.0%
!! AAGTGTTTCTCATTTTTCCT+CGG - chr3_1:83436670-83436689 Msa0381360:intron 30.0%
CAATGAACCAAACTAAGAAA+AGG + chr3_1:83436715-83436734 None:intergenic 30.0%
CTTCCGAAAATTTCAAATTC+AGG + chr3_1:83436918-83436937 None:intergenic 30.0%
AAGTACACAATTGAAAGTTC+TGG - chr3_1:83437083-83437102 Msa0381360:CDS 30.0%
AGCTTCTCAAATTATGATTC+AGG - chr3_1:83437184-83437203 Msa0381360:intron 30.0%
TAGTAGCAATTCAGATTCAA+AGG - chr3_1:83437349-83437368 Msa0381360:CDS 30.0%
!! TGATGTTTTTACCAAACATC+TGG + chr3_1:83437459-83437478 None:intergenic 30.0%
AAAACATCAAACATGGATAC+TGG - chr3_1:83437470-83437489 Msa0381360:CDS 30.0%
AAATGCTGTGATGATATTTG+AGG - chr3_1:83437542-83437561 Msa0381360:CDS 30.0%
GCAAAAAATTGTAGGGAAAA+AGG + chr3_1:83437589-83437608 None:intergenic 30.0%
!! AAACATCAGATTGCTTTTCT+TGG + chr3_1:83437683-83437702 None:intergenic 30.0%
GAAATATGAGCATCTATTTC+AGG - chr3_1:83437743-83437762 Msa0381360:CDS 30.0%
TATACATTCTTGCACCTATA+TGG + chr3_1:83437789-83437808 None:intergenic 30.0%
GAGAGAAGAGGTTAAAAGTT+GGG + chr3_1:83433429-83433448 None:intergenic 35.0%
TGAGAGAAGAGGTTAAAAGT+TGG + chr3_1:83433430-83433449 None:intergenic 35.0%
!! ATTATTGTTTCTAGGTGAGG+TGG + chr3_1:83433613-83433632 None:intergenic 35.0%
! AAACCCTAACTCGTCAATTT+TGG - chr3_1:83433724-83433743 Msa0381360:three_prime_UTR 35.0%
! AACCCTAACTCGTCAATTTT+GGG - chr3_1:83433725-83433744 Msa0381360:three_prime_UTR 35.0%
!! GATTGAGAAATAGTTGATGG+GGG + chr3_1:83433774-83433793 None:intergenic 35.0%
GGAATTTGATATACAATGCG+CGG - chr3_1:83433908-83433927 Msa0381360:three_prime_UTR 35.0%
TTATCATCTTCCTCGTCAAT+TGG + chr3_1:83434005-83434024 None:intergenic 35.0%
!!! TGTAGATTTTGAAATGTCCG+AGG - chr3_1:83434223-83434242 Msa0381360:CDS 35.0%
ATCATGCTATGGTTGTTGAA+AGG - chr3_1:83434255-83434274 Msa0381360:CDS 35.0%
AACTGCGAAATAACAAACCT+GGG + chr3_1:83434414-83434433 None:intergenic 35.0%
AAACTGCGAAATAACAAACC+TGG + chr3_1:83434415-83434434 None:intergenic 35.0%
AGCAATCCAAGCTTGAAATT+TGG - chr3_1:83434587-83434606 Msa0381360:intron 35.0%
CTACTTCCAAATTTCAAGCT+TGG + chr3_1:83434596-83434615 None:intergenic 35.0%
CAAGCTTGAAATTTGGAAGT+AGG - chr3_1:83434594-83434613 Msa0381360:intron 35.0%
! TGGTTTTCAATGCCATCTTT+TGG - chr3_1:83434617-83434636 Msa0381360:intron 35.0%
! GGTTTTCAATGCCATCTTTT+GGG - chr3_1:83434618-83434637 Msa0381360:intron 35.0%
!!! CATCTTTTGGGACTTTACTA+GGG - chr3_1:83434630-83434649 Msa0381360:intron 35.0%
! ACTTTTGCATCCTTATCAGT+CGG + chr3_1:83434722-83434741 None:intergenic 35.0%
!! ATAAGAAATAGCGGATAACG+TGG - chr3_1:83435001-83435020 Msa0381360:intron 35.0%
! TTTTATGCTTTTCCCCCTAA+TGG + chr3_1:83435524-83435543 None:intergenic 35.0%
! AGCGGTTATTGATTACATAG+CGG + chr3_1:83435560-83435579 None:intergenic 35.0%
! TTTCTTCCTGGTGTGAATTT+TGG - chr3_1:83436069-83436088 Msa0381360:intron 35.0%
ATGCCTAATACGGATATGTT+TGG - chr3_1:83436165-83436184 Msa0381360:intron 35.0%
GATGAAAAGGGATAAATGGA+TGG - chr3_1:83436191-83436210 Msa0381360:intron 35.0%
ATATCTAATGGAGAGTAGAG+TGG + chr3_1:83436385-83436404 None:intergenic 35.0%
! ATAACTTGTGAGGCTATGTT+AGG + chr3_1:83436415-83436434 None:intergenic 35.0%
!!! GCTGTAGTTGTTTCTTCTTT+TGG - chr3_1:83436523-83436542 Msa0381360:intron 35.0%
!!! GTTTTAACTTTTGCAGGTCA+TGG - chr3_1:83436848-83436867 Msa0381360:intron 35.0%
AACAACTTCTTTGTCTGTGA+TGG - chr3_1:83437043-83437062 Msa0381360:CDS 35.0%
ATCAGATAAGTCGGTTATTG+AGG - chr3_1:83437115-83437134 Msa0381360:intron 35.0%
CAGACGATGATTCTGATTTA+GGG - chr3_1:83437237-83437256 Msa0381360:intron 35.0%
AGACGATGATTCTGATTTAG+GGG - chr3_1:83437238-83437257 Msa0381360:intron 35.0%
TAGCAATTCAGATTCAAAGG+TGG - chr3_1:83437352-83437371 Msa0381360:CDS 35.0%
AAAGAGAATTGCCAGATGTT+TGG - chr3_1:83437445-83437464 Msa0381360:CDS 35.0%
AGATATCGAAAACATGGTTG+TGG - chr3_1:83437717-83437736 Msa0381360:CDS 35.0%
GATATCGAAAACATGGTTGT+GGG - chr3_1:83437718-83437737 Msa0381360:CDS 35.0%
GTTAAAAGTTGGGATCAGGT+GGG + chr3_1:83433419-83433438 None:intergenic 40.0%
AGAGGTTAAAAGTTGGGATC+AGG + chr3_1:83433423-83433442 None:intergenic 40.0%
ACAAAAAAGCGACCTTCGAA+TGG + chr3_1:83433471-83433490 None:intergenic 40.0%
! CACCATCATCATCATCGATT+CGG + chr3_1:83433557-83433576 None:intergenic 40.0%
! ACCCTAACTCGTCAATTTTG+GGG - chr3_1:83433726-83433745 Msa0381360:three_prime_UTR 40.0%
ACCCCAAAATTGACGAGTTA+GGG + chr3_1:83433730-83433749 None:intergenic 40.0%
TACCCCAAAATTGACGAGTT+AGG + chr3_1:83433731-83433750 None:intergenic 40.0%
!!! AACTCGTCAATTTTGGGGTA+TGG - chr3_1:83433731-83433750 Msa0381360:three_prime_UTR 40.0%
! CAACAACAACAGCAAGTTGA+TGG - chr3_1:83433795-83433814 Msa0381360:three_prime_UTR 40.0%
TTTGATATACAATGCGCGGT+TGG - chr3_1:83433912-83433931 Msa0381360:three_prime_UTR 40.0%
GTCAATTGGAAAATCCAACC+AGG + chr3_1:83433991-83434010 None:intergenic 40.0%
! GTTGGATTTTCCAATTGACG+AGG - chr3_1:83433992-83434011 Msa0381360:CDS 40.0%
ATTCTTAGCGCAGCTAATCT+CGG + chr3_1:83434287-83434306 None:intergenic 40.0%
ACTGCGAAATAACAAACCTG+GGG + chr3_1:83434413-83434432 None:intergenic 40.0%
GATAACAAGAGCAGTGTGAA+AGG + chr3_1:83434444-83434463 None:intergenic 40.0%
! ACACTGCTCTTGTTATCTCT+TGG - chr3_1:83434447-83434466 Msa0381360:CDS 40.0%
GCTTGAAATTTGGAAGTAGG+TGG - chr3_1:83434597-83434616 Msa0381360:intron 40.0%
CCTAGTAAAGTCCCAAAAGA+TGG + chr3_1:83434632-83434651 None:intergenic 40.0%
!!! CCATCTTTTGGGACTTTACT+AGG - chr3_1:83434629-83434648 Msa0381360:intron 40.0%
GGCCAAGCAACATGAATTAA+AGG + chr3_1:83434766-83434785 None:intergenic 40.0%
TTGGCCCTCTTTGTATATTG+TGG - chr3_1:83434780-83434799 Msa0381360:intron 40.0%
! CAATCTGAAGTTCTTCTCAG+AGG - chr3_1:83434840-83434859 Msa0381360:intron 40.0%
ATAACGTGGCAGGAAAATAG+CGG - chr3_1:83435015-83435034 Msa0381360:intron 40.0%
TTAGTGATGAGAGGTTGCTT+AGG - chr3_1:83435384-83435403 Msa0381360:intron 40.0%
AAATATCACATGAGCTGCAC+AGG + chr3_1:83435492-83435511 None:intergenic 40.0%
GGAAAAAACCACCACTATTG+CGG - chr3_1:83435591-83435610 Msa0381360:intron 40.0%
GTCAGTGTCTCAATACTCAA+TGG - chr3_1:83435739-83435758 Msa0381360:intron 40.0%
GAGCACACAAGAATATACAG+GGG + chr3_1:83435894-83435913 None:intergenic 40.0%
GGAGCACACAAGAATATACA+GGG + chr3_1:83435895-83435914 None:intergenic 40.0%
TGGAGCACACAAGAATATAC+AGG + chr3_1:83435896-83435915 None:intergenic 40.0%
GTGAGATATTGGATGGAATG+GGG + chr3_1:83436292-83436311 None:intergenic 40.0%
GGTGAGATATTGGATGGAAT+GGG + chr3_1:83436293-83436312 None:intergenic 40.0%
ATTCTGCTCAAAATCCAAGG+GGG + chr3_1:83436320-83436339 None:intergenic 40.0%
CATTCTGCTCAAAATCCAAG+GGG + chr3_1:83436321-83436340 None:intergenic 40.0%
CCATTCTGCTCAAAATCCAA+GGG + chr3_1:83436322-83436341 None:intergenic 40.0%
! CCTTGGATTTTGAGCAGAAT+GGG - chr3_1:83436320-83436339 Msa0381360:intron 40.0%
GAGTTGGCTAATAATCGAGT+TGG - chr3_1:83436498-83436517 Msa0381360:intron 40.0%
CATTTCAACACTACTTTCCG+AGG + chr3_1:83436690-83436709 None:intergenic 40.0%
! TAGGTGTCATCTGATAAGCT+GGG + chr3_1:83436987-83437006 None:intergenic 40.0%
! ATAGGTGTCATCTGATAAGC+TGG + chr3_1:83436988-83437007 None:intergenic 40.0%
ATGAGGCATGTCATCAGAAT+AGG + chr3_1:83437006-83437025 None:intergenic 40.0%
ATTCTGATGACATGCCTCAT+CGG - chr3_1:83437006-83437025 Msa0381360:CDS 40.0%
! ATTCAGGACTATGATGACGA+CGG - chr3_1:83437200-83437219 Msa0381360:intron 40.0%
CCTAAATCAGAATCATCGTC+TGG + chr3_1:83437239-83437258 None:intergenic 40.0%
CCAGACGATGATTCTGATTT+AGG - chr3_1:83437236-83437255 Msa0381360:intron 40.0%
GACGATGATTCTGATTTAGG+GGG - chr3_1:83437239-83437258 Msa0381360:intron 40.0%
TATATCTTTCAGCGATCTCG+AGG - chr3_1:83437301-83437320 Msa0381360:intron 40.0%
GATCTCGAGGATGATGATTA+TGG - chr3_1:83437314-83437333 Msa0381360:intron 40.0%
! ACACGACTGAGGTGATTTTA+GGG - chr3_1:83437390-83437409 Msa0381360:CDS 40.0%
TTGATTTCTTGTTCCGTGTG+AGG + chr3_1:83437425-83437444 None:intergenic 40.0%
TAACTTCGCTCACCATTATG+TGG + chr3_1:83437519-83437538 None:intergenic 40.0%
CCTTGCGGCAAAAAATTGTA+GGG + chr3_1:83437596-83437615 None:intergenic 40.0%
!! ATGGTGGATGTAATAGGGTT+CGG - chr3_1:83437867-83437886 Msa0381360:five_prime_UTR 40.0%
! ATCAGGTGGGTGTTGCATTA+CGG + chr3_1:83433406-83433425 None:intergenic 45.0%
GGTTAAAAGTTGGGATCAGG+TGG + chr3_1:83433420-83433439 None:intergenic 45.0%
GATTCGGAGAGAGTTTGCAA+GGG + chr3_1:83433541-83433560 None:intergenic 45.0%
! CTCCGAATCGATGATGATGA+TGG - chr3_1:83433552-83433571 Msa0381360:three_prime_UTR 45.0%
!! GATTCGGTTACGACGTCTTT+TGG + chr3_1:83433585-83433604 None:intergenic 45.0%
!! TTGTTTCTAGGTGAGGTGGT+TGG + chr3_1:83433609-83433628 None:intergenic 45.0%
! GGGTTTGTTTGATTTCGTCG+AGG + chr3_1:83433710-83433729 None:intergenic 45.0%
!! TGAGAAATAGTTGATGGGGG+AGG + chr3_1:83433771-83433790 None:intergenic 45.0%
ATGGAACAAGGTGTGTTTCG+TGG - chr3_1:83433846-83433865 Msa0381360:three_prime_UTR 45.0%
TGGAACAAGGTGTGTTTCGT+GGG - chr3_1:83433847-83433866 Msa0381360:three_prime_UTR 45.0%
GGATGATCCTCAACCGAATT+CGG - chr3_1:83433869-83433888 Msa0381360:three_prime_UTR 45.0%
TCCTGTTCTCCTTCCGAATT+CGG + chr3_1:83433885-83433904 None:intergenic 45.0%
ATTCGGAAGGAGAACAGGAA+AGG - chr3_1:83433886-83433905 Msa0381360:three_prime_UTR 45.0%
TTCGGAAGGAGAACAGGAAA+GGG - chr3_1:83433887-83433906 Msa0381360:three_prime_UTR 45.0%
TATGCATCCTGAAACCTGGT+TGG - chr3_1:83433974-83433993 Msa0381360:exon 45.0%
GGAAAATCCAACCAGGTTTC+AGG + chr3_1:83433984-83434003 None:intergenic 45.0%
! GACGAGGAAGATGATAACGA+CGG - chr3_1:83434008-83434027 Msa0381360:CDS 45.0%
CAACCATAGCATGATCTCGT+TGG + chr3_1:83434250-83434269 None:intergenic 45.0%
AAGAGCAGTGTGAAAGGCAA+AGG + chr3_1:83434438-83434457 None:intergenic 45.0%
! AAATAGCGGAAGCTGCAAAG+TGG - chr3_1:83435029-83435048 Msa0381360:intron 45.0%
CCTTCAAGACATTGATCACG+AGG + chr3_1:83435318-83435337 None:intergenic 45.0%
CCTCGTGATCAATGTCTTGA+AGG - chr3_1:83435315-83435334 Msa0381360:intron 45.0%
AATGAAGAGAGAAGACGGAG+AGG - chr3_1:83435351-83435370 Msa0381360:intron 45.0%
AGAGGCAGTTTAGTGATGAG+AGG - chr3_1:83435375-83435394 Msa0381360:intron 45.0%
AAAAACCACCACTATTGCGG+TGG - chr3_1:83435594-83435613 Msa0381360:intron 45.0%
AGCGGAATTGCAATAGCGTA+TGG - chr3_1:83435622-83435641 Msa0381360:intron 45.0%
GCGGAATTGCAATAGCGTAT+GGG - chr3_1:83435623-83435642 Msa0381360:intron 45.0%
! ATTTGGGGCAACTGTGATGA+AGG + chr3_1:83435649-83435668 None:intergenic 45.0%
! CTTCCTGGTGTGAATTTTGG+TGG - chr3_1:83436072-83436091 Msa0381360:intron 45.0%
GGGTGAGATATTGGATGGAA+TGG + chr3_1:83436294-83436313 None:intergenic 45.0%
! CCCTTGGATTTTGAGCAGAA+TGG - chr3_1:83436319-83436338 Msa0381360:intron 45.0%
CCCATTCTGCTCAAAATCCA+AGG + chr3_1:83436323-83436342 None:intergenic 45.0%
! GGATTTTGAGCAGAATGGGA+TGG - chr3_1:83436324-83436343 Msa0381360:intron 45.0%
GTGAGGCTATGTTAGGACTT+AGG + chr3_1:83436408-83436427 None:intergenic 45.0%
AGCCAACTCATCAAAGTGCA+CGG + chr3_1:83436487-83436506 None:intergenic 45.0%
TCATGGTAGCCAGATCAATG+TGG - chr3_1:83436865-83436884 Msa0381360:intron 45.0%
TTCCTGCATCCACATTGATC+TGG + chr3_1:83436877-83436896 None:intergenic 45.0%
CTATATCCGAATGTCCGATG+AGG + chr3_1:83437023-83437042 None:intergenic 45.0%
! ATGACGACGGTGATGATGAT+TGG - chr3_1:83437213-83437232 Msa0381360:intron 45.0%
TCTGATTTAGGGGGATATCG+TGG - chr3_1:83437248-83437267 Msa0381360:intron 45.0%
AACTTCAGATGACACGACTG+AGG - chr3_1:83437379-83437398 Msa0381360:CDS 45.0%
! GACACGACTGAGGTGATTTT+AGG - chr3_1:83437389-83437408 Msa0381360:CDS 45.0%
! CACGACTGAGGTGATTTTAG+GGG - chr3_1:83437391-83437410 Msa0381360:CDS 45.0%
!!! CCCTACAATTTTTTGCCGCA+AGG - chr3_1:83437593-83437612 Msa0381360:CDS 45.0%
GCCTTGCGGCAAAAAATTGT+AGG + chr3_1:83437597-83437616 None:intergenic 45.0%
!!! CAATTTTTTGCCGCAAGGCT+AGG - chr3_1:83437598-83437617 Msa0381360:CDS 45.0%
! TGGTGGATGTAATAGGGTTC+GGG - chr3_1:83437868-83437887 Msa0381360:five_prime_UTR 45.0%
AGGATTCAGGAGAACAACAC+CGG + chr3_1:83437902-83437921 None:intergenic 45.0%
CTCCTGAATCCTAATTGCCT+TGG - chr3_1:83437910-83437929 Msa0381360:five_prime_UTR 45.0%
CACCAAGGCAATTAGGATTC+AGG + chr3_1:83437915-83437934 None:intergenic 45.0%
GTTGACACACCAAGGCAATT+AGG + chr3_1:83437922-83437941 None:intergenic 45.0%
CAAACACAGTTGACACACCA+AGG + chr3_1:83437930-83437949 None:intergenic 45.0%
! CGATTCGGAGAGAGTTTGCA+AGG + chr3_1:83433542-83433561 None:intergenic 50.0%
AGGTGAGGTGGTTGGAGATT+CGG + chr3_1:83433601-83433620 None:intergenic 50.0%
GATGAAACGTTGCAAGGTCG+TGG - chr3_1:83433672-83433691 Msa0381360:three_prime_UTR 50.0%
GGAACAAGGTGTGTTTCGTG+GGG - chr3_1:83433848-83433867 Msa0381360:three_prime_UTR 50.0%
GATCCTCAACCGAATTCGGA+AGG - chr3_1:83433873-83433892 Msa0381360:three_prime_UTR 50.0%
TCTCCTTCCGAATTCGGTTG+AGG + chr3_1:83433879-83433898 None:intergenic 50.0%
ACCGAATTCGGAAGGAGAAC+AGG - chr3_1:83433881-83433900 Msa0381360:three_prime_UTR 50.0%
ATGCGCGGTTGGAATTACTG+AGG - chr3_1:83433923-83433942 Msa0381360:three_prime_UTR 50.0%
TCGCTATGCATCCTGAAACC+TGG - chr3_1:83433970-83433989 Msa0381360:exon 50.0%
AGCATGATCTCGTTGGTCCT+CGG + chr3_1:83434243-83434262 None:intergenic 50.0%
GGACCAACGAGATCATGCTA+TGG - chr3_1:83434244-83434263 Msa0381360:CDS 50.0%
!! TGAGGTTTTGTCTACACCCC+AGG - chr3_1:83434394-83434413 Msa0381360:CDS 50.0%
CACACGAGAGAGAACTACAG+AGG + chr3_1:83434665-83434684 None:intergenic 50.0%
!! GAAATAGCGGATAACGTGGC+AGG - chr3_1:83435005-83435024 Msa0381360:intron 50.0%
ATGAGAGGTTGCTTAGGTCG+TGG - chr3_1:83435390-83435409 Msa0381360:intron 50.0%
TGAGAGGTTGCTTAGGTCGT+GGG - chr3_1:83435391-83435410 Msa0381360:intron 50.0%
GTTGAGTCGGTGATGACATG+AGG + chr3_1:83435436-83435455 None:intergenic 50.0%
ACTATTGCGGTGGTAGGTAG+CGG - chr3_1:83435604-83435623 Msa0381360:intron 50.0%
GTGGTATAGCGGCGTTATAC+CGG - chr3_1:83435683-83435702 Msa0381360:intron 50.0%
GAGCCACCAAAATTCACACC+AGG + chr3_1:83436078-83436097 None:intergenic 50.0%
TGCTCAAAATCCAAGGGGGT+GGG + chr3_1:83436316-83436335 None:intergenic 50.0%
GACCGTGCACTTTGATGAGT+TGG - chr3_1:83436482-83436501 Msa0381360:intron 50.0%
AGCCAGATCAATGTGGATGC+AGG - chr3_1:83436872-83436891 Msa0381360:intron 50.0%
GACATGCCTCATCGGACATT+CGG - chr3_1:83437014-83437033 Msa0381360:CDS 50.0%
!! TGAGGTGATTTTAGGGGCAC+TGG - chr3_1:83437397-83437416 Msa0381360:CDS 50.0%
!!! TTTTTTGCCGCAAGGCTAGG+TGG - chr3_1:83437601-83437620 Msa0381360:CDS 50.0%
! TTTTTGCCGCAAGGCTAGGT+GGG - chr3_1:83437602-83437621 Msa0381360:CDS 50.0%
!! TTCAAACCCACCTAGCCTTG+CGG + chr3_1:83437611-83437630 None:intergenic 50.0%
GATTCAGGAGAACAACACCG+GGG + chr3_1:83437900-83437919 None:intergenic 50.0%
GGATTCAGGAGAACAACACC+GGG + chr3_1:83437901-83437920 None:intergenic 50.0%
! AGGTGGGTGTTGCATTACGG+TGG + chr3_1:83433403-83433422 None:intergenic 55.0%
CGCGGTTGGAATTACTGAGG+AGG - chr3_1:83433926-83433945 Msa0381360:three_prime_UTR 55.0%
GAGAGGTTGCTTAGGTCGTG+GGG - chr3_1:83435392-83435411 Msa0381360:intron 55.0%
TTGCTTAGGTCGTGGGGTTG+AGG - chr3_1:83435398-83435417 Msa0381360:intron 55.0%
TGCTTAGGTCGTGGGGTTGA+GGG - chr3_1:83435399-83435418 Msa0381360:intron 55.0%
ACCACCACTATTGCGGTGGT+AGG - chr3_1:83435598-83435617 Msa0381360:intron 55.0%
ACCTACCACCGCAATAGTGG+TGG + chr3_1:83435602-83435621 None:intergenic 55.0%
GCTACCTACCACCGCAATAG+TGG + chr3_1:83435605-83435624 None:intergenic 55.0%
GGTGGGGGTGAGATATTGGA+TGG + chr3_1:83436299-83436318 None:intergenic 55.0%
CTCAAAATCCAAGGGGGTGG+GGG + chr3_1:83436314-83436333 None:intergenic 55.0%
GCTCAAAATCCAAGGGGGTG+GGG + chr3_1:83436315-83436334 None:intergenic 55.0%
CTGCTCAAAATCCAAGGGGG+TGG + chr3_1:83436317-83436336 None:intergenic 55.0%
! GCAAGGCTAGGTGGGTTTGA+AGG - chr3_1:83437610-83437629 Msa0381360:CDS 55.0%
! TAGGGTTCGGGTTTCTACCC+CGG - chr3_1:83437880-83437899 Msa0381360:five_prime_UTR 55.0%
GGCAGGGTGACCGACTGATA+AGG - chr3_1:83434709-83434728 Msa0381360:intron 60.0%
GAGAGAAGACGGAGAGGCAG+AGG - chr3_1:83435357-83435376 Msa0381360:intron 60.0%
AGGGGGTGGGGGTGAGATAT+TGG + chr3_1:83436303-83436322 None:intergenic 60.0%
ATATCTCACCCCCACCCCCT+TGG - chr3_1:83436303-83436322 Msa0381360:intron 60.0%
!! AGGGGCACTGGAACCTCACA+CGG - chr3_1:83437409-83437428 Msa0381360:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83433379 83437977 83433379 ID=Msa0381360;Name=Msa0381360
chr3_1 mRNA 83433379 83437977 83433379 ID=Msa0381360-mRNA-1;Parent=Msa0381360;Name=Msa0381360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|3|598|405
chr3_1 exon 83433379 83434492 83433379 ID=Msa0381360-mRNA-1:exon:21469;Parent=Msa0381360-mRNA-1
chr3_1 exon 83436941 83437128 83436941 ID=Msa0381360-mRNA-1:exon:21468;Parent=Msa0381360-mRNA-1
chr3_1 exon 83437327 83437977 83437327 ID=Msa0381360-mRNA-1:exon:21467;Parent=Msa0381360-mRNA-1
chr3_1 five_prime_UTR 83437841 83437977 83437841 ID=Msa0381360-mRNA-1:five_prime_utr;Parent=Msa0381360-mRNA-1
chr3_1 CDS 83437327 83437840 83437327 ID=Msa0381360-mRNA-1:cds;Parent=Msa0381360-mRNA-1
chr3_1 CDS 83436941 83437128 83436941 ID=Msa0381360-mRNA-1:cds;Parent=Msa0381360-mRNA-1
chr3_1 CDS 83433977 83434492 83433977 ID=Msa0381360-mRNA-1:cds;Parent=Msa0381360-mRNA-1
chr3_1 three_prime_UTR 83433379 83433976 83433379 ID=Msa0381360-mRNA-1:three_prime_utr;Parent=Msa0381360-mRNA-1
Gene Sequence

>Msa0381360

ATGTCATCATGGTTTGCTCGTTCCCTTGCAAACTCTCTCCGAATCGATGATGATGATGGTGACATTCCAAAAGACGTCGTAACCGAATCTCCAACCACCTCACCTAGAAACAATAATAATAATGCAGATGAATCAGAAGAACAAGAAGAAAATAATGATGAAACGTTGCAAGGTCGTGGTGTTAAAGAAGACCTCGACGAAATCAAACAAACCCTAACTCGTCAATTTTGGGGTATGGCTTCTTTTCTCGCTCCTCCCCCATCAACTATTTCTCAATCTCAACAACAACAGCAAGTTGATGGCGATGTAATTTCAAATCAAAATTCTGAAATGGAACAAGGTGTGTTTCGTGGGGATGATCCTCAACCGAATTCGGAAGGAGAACAGGAAAGGGAATTTGATATACAATGCGCGGTTGGAATTACTGAGGAGGTTTTGACTTTTGCAATGAATATCGCTATGCATCCTGAAACCTGGTTGGATTTTCCAATTGACGAGGAAGATGATAACGACGATTTTGAAATGTCCGAGGACCAACGAGATCATGCTATGGTTGTTGAAAGGCTTGCTCCGAGATTAGCTGCGCTAAGAATTGAATTGTGCCCTTGTCATATGAGTGAAAGTTACTTTTGGAAAGTCTATTTTGTACTTTTGCATTCAAGGCTTAATAAACAAGATTCTGAGGTTTTGTCTACACCCCAGGTCATGGTAGCCAGATCAATGTGGATGCAGGAATTGCAGAAACAAACAAAGCCTGAATTTGAAATTTTCGGAAGAAGTGATCTCTACTCAAGAGACAATGCTCAGCATCATGATTCTACTCCCAGCTTATCAGATGACACCTATTCTGATGACATGCCTCATCGGACATTCGGATATAGAACAACTTCTTTGTCTGTGATGGCAGATAATGAGTCTGAAAAGTACACAATTGAAAGTTCTGGATCACATTTATCAGATAAGTCGGTTATTGAGGAAAATCCAAGTAATAAAACTGAAAACAAAGATCTAAAAAGTGGTCGAGCTTCTCAAATTATGATTCAGGACTATGATGACGACGGTGATGATGATTGGCCAGACGATGATTCTGATTTAGGGGGATATCGTGGAACAGCGCTCCCTATTGTGAATGAAGAAGATATATCTTTCAGCGATCTCGAGGATGATGATTATGGCATTAAACATGTTAGTAGCAATTCAGATTCAAAGGTGGTGTGA
Protein sequence

>Msa0381360

MSSWFARSLANSLRIDDDDGDIPKDVVTESPTTSPRNNNNNADESEEQEENNDETLQGRGVKEDLDEIKQTLTRQFWGMASFLAPPPSTISQSQQQQQVDGDVISNQNSEMEQGVFRGDDPQPNSEGEQEREFDIQCAVGITEEVLTFAMNIAMHPETWLDFPIDEEDDNDDFEMSEDQRDHAMVVERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKQDSEVLSTPQVMVARSMWMQELQKQTKPEFEIFGRSDLYSRDNAQHHDSTPSLSDDTYSDDMPHRTFGYRTTSLSVMADNESEKYTIESSGSHLSDKSVIEENPSNKTENKDLKSGRASQIMIQDYDDDGDDDWPDDDSDLGGYRGTALPIVNEEDISFSDLEDDDYGIKHVSSNSDSKVV*