Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424600 | sp|Q68CP4|HGNAT_HUMAN | 29.477 | 363 | 165 | 12 | 21 | 327 | 266 | 593 | 6.03e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424600 | A0A396J3S6 | 86.874 | 419 | 14 | 3 | 1 | 381 | 1 | 416 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422650 | Msa1424600 | 0.800216 | 1.599461e-48 | -8.615850e-47 |
| Msa0524310 | Msa1424600 | 0.926011 | 8.415781e-91 | -8.615850e-47 |
| Msa0524420 | Msa1424600 | 0.925709 | 1.270553e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424600 | MtrunA17_Chr3g0145661 | 86.874 | 419 | 14 | 3 | 1 | 381 | 1 | 416 | 0.0 | 713 |
| Msa1424600 | MtrunA17_Chr7g0214801 | 42.748 | 393 | 180 | 4 | 22 | 374 | 66 | 453 | 3.07e-113 | 338 |
| Msa1424600 | MtrunA17_Chr1g0195051 | 43.750 | 400 | 181 | 4 | 22 | 380 | 44 | 440 | 1.09e-110 | 332 |
| Msa1424600 | MtrunA17_Chr7g0272261 | 40.887 | 406 | 191 | 6 | 14 | 374 | 22 | 423 | 5.10e-101 | 307 |
| Msa1424600 | MtrunA17_Chr1g0180411 | 38.670 | 406 | 198 | 6 | 13 | 374 | 55 | 453 | 8.41e-96 | 294 |
| Msa1424600 | MtrunA17_Chr7g0264851 | 34.353 | 425 | 189 | 9 | 17 | 374 | 57 | 458 | 3.07e-72 | 234 |
| Msa1424600 | MtrunA17_Chr7g0264821 | 41.909 | 241 | 123 | 5 | 141 | 374 | 5 | 235 | 1.28e-60 | 197 |
| Msa1424600 | MtrunA17_Chr7g0264831 | 35.606 | 132 | 43 | 2 | 3 | 98 | 48 | 173 | 2.63e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424600 | AT5G47900.9 | 45.694 | 418 | 176 | 5 | 2 | 374 | 25 | 436 | 8.56e-119 | 352 |
| Msa1424600 | AT5G47900.1 | 45.694 | 418 | 176 | 5 | 2 | 374 | 25 | 436 | 8.56e-119 | 352 |
| Msa1424600 | AT5G47900.10 | 46.736 | 383 | 153 | 5 | 37 | 374 | 1 | 377 | 1.65e-111 | 331 |
| Msa1424600 | AT5G47900.6 | 49.515 | 309 | 141 | 4 | 75 | 374 | 34 | 336 | 2.51e-99 | 298 |
| Msa1424600 | AT5G27730.1 | 40.955 | 398 | 187 | 5 | 21 | 374 | 35 | 428 | 1.60e-97 | 298 |
| Msa1424600 | AT5G47900.8 | 44.414 | 367 | 153 | 5 | 2 | 323 | 25 | 385 | 9.00e-97 | 294 |
| Msa1424600 | AT5G47900.4 | 39.578 | 427 | 190 | 8 | 2 | 374 | 19 | 431 | 4.48e-96 | 293 |
| Msa1424600 | AT5G47900.7 | 40.594 | 404 | 152 | 6 | 2 | 323 | 25 | 422 | 1.64e-89 | 276 |
| Msa1424600 | AT5G27730.3 | 43.516 | 347 | 148 | 5 | 21 | 323 | 35 | 377 | 1.27e-87 | 270 |
| Msa1424600 | AT5G47900.11 | 50.000 | 256 | 115 | 3 | 126 | 374 | 3 | 252 | 4.50e-82 | 251 |
| Msa1424600 | AT5G27730.4 | 43.960 | 298 | 120 | 4 | 21 | 275 | 35 | 328 | 7.55e-81 | 252 |
| Msa1424600 | AT5G47900.2 | 42.718 | 309 | 126 | 5 | 2 | 265 | 25 | 327 | 1.07e-78 | 246 |
| Msa1424600 | AT5G27730.2 | 41.083 | 314 | 173 | 4 | 69 | 374 | 38 | 347 | 1.52e-76 | 242 |
| Msa1424600 | AT5G27730.5 | 44.487 | 263 | 134 | 4 | 69 | 323 | 38 | 296 | 1.75e-66 | 213 |
| Msa1424600 | AT5G47900.3 | 41.897 | 253 | 101 | 4 | 2 | 214 | 25 | 271 | 1.40e-57 | 190 |
| Msa1424600 | AT5G47900.5 | 41.406 | 256 | 101 | 4 | 2 | 214 | 25 | 274 | 3.76e-57 | 189 |
Find 103 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCCGGTTTCACATTTA+TGG | 0.131675 | tig0025770:-48815 | Msa1424600:CDS |
| GACTTATTGAATTGTATTAT+TGG | 0.160430 | tig0025770:-48185 | Msa1424600:three_prime_UTR |
| TGCATTATTGGACTTCAATA+TGG | 0.179392 | tig0025770:-49361 | Msa1424600:CDS |
| GCTGCAGTTTCATGCATTAT+TGG | 0.191483 | tig0025770:-49373 | Msa1424600:CDS |
| CTTATGATATTTGTCGATTA+TGG | 0.223955 | tig0025770:-51489 | Msa1424600:CDS |
| TCCCGTTGGAATGCTGTAAT+TGG | 0.226963 | tig0025770:-48333 | Msa1424600:three_prime_UTR |
| CCTTTCTTTCTCTTCCTTGT+TGG | 0.247561 | tig0025770:-51399 | Msa1424600:intron |
| CTGCTTAGCTCTGCAGCTTC+CGG | 0.284725 | tig0025770:-48829 | Msa1424600:CDS |
| GTTCAAACTATACGCTTCTT+TGG | 0.296079 | tig0025770:-51216 | Msa1424600:CDS |
| ACGTTACATGGAAAGACTTT+AGG | 0.299486 | tig0025770:+48051 | None:intergenic |
| GGGTGGTTCCTTGCGTTAAT+AGG | 0.300918 | tig0025770:-49079 | Msa1424600:intron |
| ATGATTGATCGCTATATTCT+TGG | 0.323341 | tig0025770:-50597 | Msa1424600:CDS |
| GGTTACCTTAAAATGCCTTC+TGG | 0.328597 | tig0025770:+50363 | None:intergenic |
| AATACAATTCAATAAGTCTT+AGG | 0.333014 | tig0025770:+48190 | None:intergenic |
| TTTGAAGAAACTCGGATGTT+TGG | 0.338485 | tig0025770:+51122 | None:intergenic |
| ATTTATGGCTTTATATATTC+TGG | 0.342580 | tig0025770:-48800 | Msa1424600:intron |
| GTGTACAGAGATTTATTTAG+AGG | 0.350332 | tig0025770:+48865 | None:intergenic |
| GCACATTCTTGCCAACTTAG+AGG | 0.363831 | tig0025770:-49338 | Msa1424600:intron |
| TAAACATTGGCGCCTTGAAT+TGG | 0.371732 | tig0025770:+50890 | None:intergenic |
| TCTTCTTTGCCTCCAATTCA+AGG | 0.372683 | tig0025770:-50902 | Msa1424600:CDS |
| ACTCTGCAGGTAGATGTTTA+CGG | 0.374686 | tig0025770:-48617 | Msa1424600:intron |
| ACCTTAAGATTTCTGAAAAC+AGG | 0.377103 | tig0025770:+50552 | None:intergenic |
| AATCATTCCAGCAGAATTGC+AGG | 0.385868 | tig0025770:+50614 | None:intergenic |
| CTCTGCAGGTAGATGTTTAC+GGG | 0.398068 | tig0025770:-48616 | Msa1424600:intron |
| GCATTATTGGACTTCAATAT+GGG | 0.409722 | tig0025770:-49360 | Msa1424600:CDS |
| TGTTCAGTGAGAGGTGATCT+TGG | 0.410959 | tig0025770:-50642 | Msa1424600:CDS |
| GATGCATCGAAGTGCCAATC+TGG | 0.416971 | tig0025770:+50935 | None:intergenic |
| GGAGTATAATATACGTAAGT+AGG | 0.425257 | tig0025770:-51763 | Msa1424600:five_prime_UTR |
| GACATCAACGGAGGCAACTC+GGG | 0.437406 | tig0025770:+51635 | None:intergenic |
| ATTTACTCCGGATTGTTGTA+TGG | 0.438927 | tig0025770:-50968 | Msa1424600:CDS |
| TCCAATTACAGCATTCCAAC+GGG | 0.448756 | tig0025770:+48332 | None:intergenic |
| GACAAGTGTGTTGGAGTGGA+TGG | 0.450359 | tig0025770:-48582 | Msa1424600:CDS |
| CCATGGAGCATGAGAAATGA+TGG | 0.451821 | tig0025770:+51452 | None:intergenic |
| TGTTCTTGTATCTTCAAACT+TGG | 0.454466 | tig0025770:-48537 | Msa1424600:CDS |
| TAAAGCCATAAATGTGAAAC+CGG | 0.454471 | tig0025770:+48810 | None:intergenic |
| GGACCTGCCTGCAATTCTGC+TGG | 0.460227 | tig0025770:-50621 | Msa1424600:CDS |
| GTTAAAGAAAGAAGATGAGA+GGG | 0.460535 | tig0025770:-51785 | Msa1424600:five_prime_UTR |
| CAATATGTCCTATTCTAATA+CGG | 0.463441 | tig0025770:+48120 | None:intergenic |
| ATTCAAAATTAGACGTTACA+TGG | 0.464007 | tig0025770:+48039 | None:intergenic |
| AAAATGCCTTCTGGATCAAA+AGG | 0.469212 | tig0025770:+50372 | None:intergenic |
| GGCATCAATTCCTTCACATA+TGG | 0.470691 | tig0025770:-51246 | Msa1424600:CDS |
| GTTTCTAGCAGCAATATTGT+TGG | 0.471022 | tig0025770:-50993 | Msa1424600:CDS |
| TCAAAACTTATTACTCCCAT+TGG | 0.476105 | tig0025770:-51104 | Msa1424600:intron |
| TTGGCCGTGATTGCAATTCA+AGG | 0.479960 | tig0025770:-48518 | Msa1424600:CDS |
| ACATTGGCGCCTTGAATTGG+AGG | 0.491113 | tig0025770:+50893 | None:intergenic |
| AGACATCAACGGAGGCAACT+CGG | 0.491228 | tig0025770:+51634 | None:intergenic |
| AAGAAACTCGGATGTTTGGA+TGG | 0.491252 | tig0025770:+51126 | None:intergenic |
| ATGAGAAATGATGGGGAAGA+TGG | 0.492402 | tig0025770:+51461 | None:intergenic |
| TTAGGAGTAGATAAGTTATG+AGG | 0.493354 | tig0025770:+48208 | None:intergenic |
| ATGGTCTATATGTTCCAGAT+TGG | 0.496797 | tig0025770:-50949 | Msa1424600:CDS |
| CCATCATTTCTCATGCTCCA+TGG | 0.501869 | tig0025770:-51452 | Msa1424600:CDS |
| GTTTGGATGGGAGAGTCGGA+AGG | 0.507351 | tig0025770:+51139 | None:intergenic |
| AGTGATTTAGGCGCCCTTTG+TGG | 0.507807 | tig0025770:+49134 | None:intergenic |
| AAACAAAACCGTCATATTCG+TGG | 0.509244 | tig0025770:-48235 | Msa1424600:three_prime_UTR |
| CCAACAAGGAAGAGAAAGAA+AGG | 0.513124 | tig0025770:+51399 | None:intergenic |
| ATTTCTCATGCTCCATGGAA+TGG | 0.517246 | tig0025770:-51447 | Msa1424600:CDS |
| AGATTTCAACACAAATAACT+TGG | 0.518079 | tig0025770:-48361 | Msa1424600:exon |
| ACATGATCTCACCTCTAAGT+TGG | 0.518261 | tig0025770:+49327 | None:intergenic |
| ACAAAGGGCGCCTAAATCAC+TGG | 0.519041 | tig0025770:-49132 | Msa1424600:CDS |
| CAATACTGTAGGACCACAAA+GGG | 0.522623 | tig0025770:-49147 | Msa1424600:intron |
| TTTCTTACTCGCAGATACAC+TGG | 0.523759 | tig0025770:-48393 | Msa1424600:intron |
| GGGCGCCTAAATCACTGGCT+TGG | 0.529127 | tig0025770:-49127 | Msa1424600:CDS |
| ATCTATCTATCAAAGAAGAA+TGG | 0.529884 | tig0025770:-51715 | Msa1424600:exon |
| ACGGTGAACTATCTGAAACT+TGG | 0.530146 | tig0025770:+50409 | None:intergenic |
| ATGATATTTGTCGATTATGG+TGG | 0.535720 | tig0025770:-51486 | Msa1424600:CDS |
| AGTTAAAGAAAGAAGATGAG+AGG | 0.540378 | tig0025770:-51786 | Msa1424600:five_prime_UTR |
| ATATTGTTGGCAATTTACTC+CGG | 0.555052 | tig0025770:-50980 | Msa1424600:CDS |
| CAGACGTTTGACAAGTGTGT+TGG | 0.557488 | tig0025770:-48591 | Msa1424600:CDS |
| ACAAGTGTGTTGGAGTGGAT+GGG | 0.559908 | tig0025770:-48581 | Msa1424600:CDS |
| AAATCCTTGAATTGCAATCA+CGG | 0.562969 | tig0025770:+48514 | None:intergenic |
| GAGTGCAATATGTCTAGCAC+TGG | 0.569204 | tig0025770:-50432 | Msa1424600:CDS |
| CATGGAGCATGAGAAATGAT+GGG | 0.571546 | tig0025770:+51453 | None:intergenic |
| TTTCAGATAGTTCACCGTCA+TGG | 0.572351 | tig0025770:-50404 | Msa1424600:CDS |
| GCAAGGTGAAGACCATTCCA+TGG | 0.582375 | tig0025770:+51435 | None:intergenic |
| AGAAACTCGGATGTTTGGAT+GGG | 0.586314 | tig0025770:+51127 | None:intergenic |
| ATAACTTGGTCTAGTCCCGT+TGG | 0.587653 | tig0025770:-48347 | Msa1424600:exon |
| ATCCAATTACAGCATTCCAA+CGG | 0.588026 | tig0025770:+48331 | None:intergenic |
| GCCTCCGTTGATGTCTTCCG+TGG | 0.591050 | tig0025770:-51627 | Msa1424600:CDS |
| TATTCTCACGGTGTAAACAT+TGG | 0.593312 | tig0025770:+50877 | None:intergenic |
| GGATGTTTGGATGGGAGAGT+CGG | 0.594308 | tig0025770:+51135 | None:intergenic |
| TTTGGATGGGAGAGTCGGAA+GGG | 0.596451 | tig0025770:+51140 | None:intergenic |
| ATATAGACCATACAACAATC+CGG | 0.597198 | tig0025770:+50961 | None:intergenic |
| AACACAAACCTATTAACGCA+AGG | 0.613812 | tig0025770:+49071 | None:intergenic |
| TTCAGCAGCAGCAACGCTCG+TGG | 0.615336 | tig0025770:+51687 | None:intergenic |
| CAGGTGAATTGTTCAGTGAG+AGG | 0.616782 | tig0025770:-50651 | Msa1424600:CDS |
| AACGTCAAGACCATATGTGA+AGG | 0.617892 | tig0025770:+51236 | None:intergenic |
| TAATATACGTAAGTAGGTAG+CGG | 0.618417 | tig0025770:-51757 | Msa1424600:five_prime_UTR |
| GAGGAGAACCACGAATATGA+CGG | 0.625274 | tig0025770:+48227 | None:intergenic |
| ATTCCAGCAGAATTGCAGGC+AGG | 0.625616 | tig0025770:+50618 | None:intergenic |
| TTAAAGAAAGAAGATGAGAG+GGG | 0.630173 | tig0025770:-51784 | Msa1424600:five_prime_UTR |
| ACATCAACGGAGGCAACTCG+GGG | 0.631918 | tig0025770:+51636 | None:intergenic |
| GTTTGACAAGTGTGTTGGAG+TGG | 0.639516 | tig0025770:-48586 | Msa1424600:CDS |
| ACAATACTGTAGGACCACAA+AGG | 0.644164 | tig0025770:-49148 | Msa1424600:intron |
| TTGAATTGGAGGCAAAGAAG+AGG | 0.646002 | tig0025770:+50904 | None:intergenic |
| TCTAAATAAATCTCTGTACA+CGG | 0.654333 | tig0025770:-48863 | Msa1424600:CDS |
| GAGGCCACGGAAGACATCAA+CGG | 0.666744 | tig0025770:+51623 | None:intergenic |
| ATGGAGCATGAGAAATGATG+GGG | 0.677643 | tig0025770:+51454 | None:intergenic |
| AAAGGAGCGTGACACCATGA+CGG | 0.685895 | tig0025770:+50390 | None:intergenic |
| AAGGCATGACGAAATCAGCA+AGG | 0.697375 | tig0025770:+51418 | None:intergenic |
| GCCACGGAAGACATCAACGG+AGG | 0.698738 | tig0025770:+51626 | None:intergenic |
| AGGACATATTGATACTTACG+AGG | 0.716429 | tig0025770:-48108 | Msa1424600:three_prime_UTR |
| GTGCAAGAGAGATACCAACA+AGG | 0.751478 | tig0025770:+51385 | None:intergenic |
| CATCAACGGAGGCAACTCGG+GGG | 0.763652 | tig0025770:+51637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGATAATACTAATAAAA+TGG | + | tig0025770:50231-50250 | None:intergenic | 10.0% |
| !!! | TAATTTAGTTTTTAACTTAA+TGG | - | tig0025770:50580-50599 | Msa1424600:CDS | 10.0% |
| !! | AACAAAAATTATATATAACA+TGG | + | tig0025770:51201-51220 | None:intergenic | 10.0% |
| !!! | TTTCTTTTAAACATAATAAC+AGG | - | tig0025770:49170-49189 | Msa1424600:intron | 15.0% |
| !!! | GTTATAAAATTTTGTAATCA+AGG | + | tig0025770:49382-49401 | None:intergenic | 15.0% |
| !!! | TATCTATTGTAATTTGTAAA+AGG | - | tig0025770:50243-50262 | Msa1424600:intron | 15.0% |
| !! | TATATATAACATGGTTAAAT+AGG | + | tig0025770:51192-51211 | None:intergenic | 15.0% |
| !! | AATATAGTTAATTGTTTGTT+GGG | + | tig0025770:51414-51433 | None:intergenic | 15.0% |
| !! | AAACAATTAACTATATTGTT+TGG | - | tig0025770:51417-51436 | Msa1424600:CDS | 15.0% |
| !!! | TAATAAGTTTTGAAGAAACT+CGG | + | tig0025770:48729-48748 | None:intergenic | 20.0% |
| !! | AATCATAAACAAAAATCACA+AGG | + | tig0025770:49148-49167 | None:intergenic | 20.0% |
| !!! | TACAAAATTTTATAACTTCC+AGG | - | tig0025770:49386-49405 | Msa1424600:CDS | 20.0% |
| !! | CAATTCACTATTTACTAATA+TGG | - | tig0025770:49733-49752 | Msa1424600:intron | 20.0% |
| !! | GTTTAAAAGAAAAATCAATC+AGG | + | tig0025770:49910-49929 | None:intergenic | 20.0% |
| !! | AGTAAGTTAATTAAGTATGA+TGG | + | tig0025770:50022-50041 | None:intergenic | 20.0% |
| !!! | AGAATAAAAAAAGTGTAAAG+GGG | + | tig0025770:50319-50338 | None:intergenic | 20.0% |
| !!! | GAGAATAAAAAAAGTGTAAA+GGG | + | tig0025770:50320-50339 | None:intergenic | 20.0% |
| !!! | AGAGAATAAAAAAAGTGTAA+AGG | + | tig0025770:50321-50340 | None:intergenic | 20.0% |
| !! | TTAAACCGAAAATTATATGA+TGG | - | tig0025770:50365-50384 | Msa1424600:intron | 20.0% |
| !!! | TACAACCATCATATAATTTT+CGG | + | tig0025770:50373-50392 | None:intergenic | 20.0% |
| !!! | ATTTATGGCTTTATATATTC+TGG | - | tig0025770:51040-51059 | Msa1424600:intron | 20.0% |
| !!! | AAATCTTACAATGTTGTTTT+CGG | + | tig0025770:51365-51384 | None:intergenic | 20.0% |
| !! | CAATATAGTTAATTGTTTGT+TGG | + | tig0025770:51415-51434 | None:intergenic | 20.0% |
| !! | AATACAATTCAATAAGTCTT+AGG | + | tig0025770:51653-51672 | None:intergenic | 20.0% |
| !! | GACTTATTGAATTGTATTAT+TGG | - | tig0025770:51655-51674 | Msa1424600:CDS | 20.0% |
| !! | AAAAAAAATGGAAAGACTTT+AGG | + | tig0025770:51759-51778 | None:intergenic | 20.0% |
| ! | ATCTATCTATCAAAGAAGAA+TGG | - | tig0025770:48125-48144 | Msa1424600:three_prime_UTR | 25.0% |
| !! | CTTATGATATTTGTCGATTA+TGG | - | tig0025770:48351-48370 | Msa1424600:exon | 25.0% |
| ! | TAACTAACTAACTAACCAAT+GGG | + | tig0025770:48754-48773 | None:intergenic | 25.0% |
| ! | GAAATTCAAAACCCTTAAAA+CGG | + | tig0025770:49064-49083 | None:intergenic | 25.0% |
| !! | AAACAGGCTTTTTGTATAAA+TGG | + | tig0025770:49275-49294 | None:intergenic | 25.0% |
| ! | AAGAAATGGGATCATTTATA+AGG | + | tig0025770:49315-49334 | None:intergenic | 25.0% |
| ! | AAACCATTGAACAAAGAAAT+GGG | + | tig0025770:49328-49347 | None:intergenic | 25.0% |
| ! | TAAACCATTGAACAAAGAAA+TGG | + | tig0025770:49329-49348 | None:intergenic | 25.0% |
| ! | TTATAAATGACAAGGATTGA+GGG | - | tig0025770:49594-49613 | Msa1424600:intron | 25.0% |
| !!! | TTTTCTACTTTTGAAAAGAC+TGG | - | tig0025770:50087-50106 | Msa1424600:intron | 25.0% |
| !!! | TTTCTACTTTTGAAAAGACT+GGG | - | tig0025770:50088-50107 | Msa1424600:intron | 25.0% |
| ! | TTGTTATCTACTATGCATAA+TGG | - | tig0025770:50154-50173 | Msa1424600:intron | 25.0% |
| !! | GAATAAAAAAAGTGTAAAGG+GGG | + | tig0025770:50318-50337 | None:intergenic | 25.0% |
| ! | ACAGTATTGTAGAAAAGTAA+AGG | + | tig0025770:50682-50701 | None:intergenic | 25.0% |
| !!! | TTACTTTTCTACAATACTGT+AGG | - | tig0025770:50682-50701 | Msa1424600:intron | 25.0% |
| !!! | TGGTTTTTCAGTTTCATTTT+TGG | - | tig0025770:50733-50752 | Msa1424600:intron | 25.0% |
| !!! | ATCAGTTGGTAACTTATATT+AGG | + | tig0025770:50840-50859 | None:intergenic | 25.0% |
| ! | ATACTTGAATCATTATCAGT+TGG | + | tig0025770:50854-50873 | None:intergenic | 25.0% |
| !! | GTATTTTCTCTTCATTATCA+TGG | - | tig0025770:50870-50889 | Msa1424600:intron | 25.0% |
| !!! | TTTTTTTGCTTTTTGTTTCC+AGG | - | tig0025770:50948-50967 | Msa1424600:CDS | 25.0% |
| ! | TCTAAATAAATCTCTGTACA+CGG | - | tig0025770:50977-50996 | Msa1424600:CDS | 25.0% |
| ! | TGTGACAATAGAAAATTATC+TGG | - | tig0025770:51077-51096 | Msa1424600:intron | 25.0% |
| ! | ATCAAAAGATGCAAAGTATA+AGG | + | tig0025770:51119-51138 | None:intergenic | 25.0% |
| !!! | AATCTTACAATGTTGTTTTC+GGG | + | tig0025770:51364-51383 | None:intergenic | 25.0% |
| ! | AGATTTCAACACAAATAACT+TGG | - | tig0025770:51479-51498 | Msa1424600:CDS | 25.0% |
| !! | TTTTCAATCCGTATTAGAAT+AGG | - | tig0025770:51712-51731 | Msa1424600:exon | 25.0% |
| ! | CAATATGTCCTATTCTAATA+CGG | + | tig0025770:51723-51742 | None:intergenic | 25.0% |
| ! | GGTTCTCTCAAAAAAAAAAA+TGG | + | tig0025770:51771-51790 | None:intergenic | 25.0% |
| AGTTAAAGAAAGAAGATGAG+AGG | - | tig0025770:48054-48073 | Msa1424600:three_prime_UTR | 30.0% | |
| GTTAAAGAAAGAAGATGAGA+GGG | - | tig0025770:48055-48074 | Msa1424600:three_prime_UTR | 30.0% | |
| TTAAAGAAAGAAGATGAGAG+GGG | - | tig0025770:48056-48075 | Msa1424600:three_prime_UTR | 30.0% | |
| GGAGTATAATATACGTAAGT+AGG | - | tig0025770:48077-48096 | Msa1424600:three_prime_UTR | 30.0% | |
| TAATATACGTAAGTAGGTAG+CGG | - | tig0025770:48083-48102 | Msa1424600:three_prime_UTR | 30.0% | |
| AGTTACATACAAAAACAGAG+AGG | + | tig0025770:48239-48258 | None:intergenic | 30.0% | |
| ! | ATGATATTTGTCGATTATGG+TGG | - | tig0025770:48354-48373 | Msa1424600:exon | 30.0% |
| AGTTGGAATGATCTAAGTAA+TGG | + | tig0025770:48534-48553 | None:intergenic | 30.0% | |
| TCATTCCAACTCTTTATTCT+TGG | - | tig0025770:48543-48562 | Msa1424600:CDS | 30.0% | |
| ! | GTTTTACAGAGGATTTCTAT+TGG | - | tig0025770:48648-48667 | Msa1424600:intron | 30.0% |
| TCAAAACTTATTACTCCCAT+TGG | - | tig0025770:48736-48755 | Msa1424600:intron | 30.0% | |
| CTAACTAACTAACTAACCAA+TGG | + | tig0025770:48755-48774 | None:intergenic | 30.0% | |
| ATATTGTTGGCAATTTACTC+CGG | - | tig0025770:48860-48879 | Msa1424600:CDS | 30.0% | |
| ATATAGACCATACAACAATC+CGG | + | tig0025770:48882-48901 | None:intergenic | 30.0% | |
| ! | AAATCACAAGGTCAACATTT+TGG | + | tig0025770:49136-49155 | None:intergenic | 30.0% |
| ATGATTGATCGCTATATTCT+TGG | - | tig0025770:49243-49262 | Msa1424600:intron | 30.0% | |
| ! | ACCTTAAGATTTCTGAAAAC+AGG | + | tig0025770:49291-49310 | None:intergenic | 30.0% |
| TTCTCAACACTTAACAAGAT+TGG | + | tig0025770:49528-49547 | None:intergenic | 30.0% | |
| GTTATAAATGACAAGGATTG+AGG | - | tig0025770:49593-49612 | Msa1424600:intron | 30.0% | |
| TAGTGAATTGAGTGATGAAA+AGG | + | tig0025770:49723-49742 | None:intergenic | 30.0% | |
| TATTAAGCCTAAATCCAACA+AGG | + | tig0025770:49953-49972 | None:intergenic | 30.0% | |
| AAACAAATATGAAGTCAGTC+AGG | + | tig0025770:50136-50155 | None:intergenic | 30.0% | |
| TCATAGAAGAAATGAATGCA+AGG | + | tig0025770:50197-50216 | None:intergenic | 30.0% | |
| AAAATCTGCAACTTATTCAG+TGG | + | tig0025770:50277-50296 | None:intergenic | 30.0% | |
| ! | CTGAATAAGTTGCAGATTTT+TGG | - | tig0025770:50277-50296 | Msa1424600:intron | 30.0% |
| !! | AATAAGTTGCAGATTTTTGG+TGG | - | tig0025770:50280-50299 | Msa1424600:intron | 30.0% |
| TGTATGCTTTATCTGTTGAT+TGG | - | tig0025770:50389-50408 | Msa1424600:CDS | 30.0% | |
| TGCATTATTGGACTTCAATA+TGG | - | tig0025770:50479-50498 | Msa1424600:intron | 30.0% | |
| GCATTATTGGACTTCAATAT+GGG | - | tig0025770:50480-50499 | Msa1424600:intron | 30.0% | |
| ! | TTTTTACTGTAAACTGTCCA+CGG | - | tig0025770:50790-50809 | Msa1424600:intron | 30.0% |
| AACTTATATTAGGTTCTCCA+CGG | + | tig0025770:50830-50849 | None:intergenic | 30.0% | |
| GATTTATTTAGAGGAATTCC+TGG | + | tig0025770:50969-50988 | None:intergenic | 30.0% | |
| GTGTACAGAGATTTATTTAG+AGG | + | tig0025770:50978-50997 | None:intergenic | 30.0% | |
| TAAAGCCATAAATGTGAAAC+CGG | + | tig0025770:51033-51052 | None:intergenic | 30.0% | |
| GATTTAAGCATCAGTCTTTA+AGG | - | tig0025770:51136-51155 | Msa1424600:CDS | 30.0% | |
| TGTTCTTGTATCTTCAAACT+TGG | - | tig0025770:51303-51322 | Msa1424600:intron | 30.0% | |
| AAATCCTTGAATTGCAATCA+CGG | + | tig0025770:51329-51348 | None:intergenic | 30.0% | |
| ! | ATAGTTAATTGTTTGTTGGG+AGG | + | tig0025770:51411-51430 | None:intergenic | 30.0% |
| TTAGGAGTAGATAAGTTATG+AGG | + | tig0025770:51635-51654 | None:intergenic | 30.0% | |
| TTCCAAGTAGTAGATTGTGT+TGG | + | tig0025770:48510-48529 | None:intergenic | 35.0% | |
| GAAAATAACCACCTTGAAGA+AGG | + | tig0025770:48572-48591 | None:intergenic | 35.0% | |
| !! | CTTCAAGGTGGTTATTTTCA+CGG | - | tig0025770:48573-48592 | Msa1424600:CDS | 35.0% |
| GTTCAAACTATACGCTTCTT+TGG | - | tig0025770:48624-48643 | Msa1424600:intron | 35.0% | |
| TTTGAAGAAACTCGGATGTT+TGG | + | tig0025770:48721-48740 | None:intergenic | 35.0% | |
| ! | CACATCACACATTTTTATGC+AGG | - | tig0025770:48825-48844 | Msa1424600:CDS | 35.0% |
| !! | GTTTCTAGCAGCAATATTGT+TGG | - | tig0025770:48847-48866 | Msa1424600:CDS | 35.0% |
| ATTTACTCCGGATTGTTGTA+TGG | - | tig0025770:48872-48891 | Msa1424600:CDS | 35.0% | |
| ATGGTCTATATGTTCCAGAT+TGG | - | tig0025770:48891-48910 | Msa1424600:intron | 35.0% | |
| TATTCTCACGGTGTAAACAT+TGG | + | tig0025770:48966-48985 | None:intergenic | 35.0% | |
| ACCAAGTTTCACTTTGTAGA+TGG | - | tig0025770:49085-49104 | Msa1424600:CDS | 35.0% | |
| ACCATCTACAAAGTGAAACT+TGG | + | tig0025770:49089-49108 | None:intergenic | 35.0% | |
| GGCTAAATAATAGTGTGCAT+TGG | + | tig0025770:49115-49134 | None:intergenic | 35.0% | |
| ! | GCCTGTTTTCAGAAATCTTA+AGG | - | tig0025770:49287-49306 | Msa1424600:intron | 35.0% |
| GATCCCATTTCTTTGTTCAA+TGG | - | tig0025770:49322-49341 | Msa1424600:intron | 35.0% | |
| AAAATGCCTTCTGGATCAAA+AGG | + | tig0025770:49471-49490 | None:intergenic | 35.0% | |
| !!! | TTGATCCAGAAGGCATTTTA+AGG | - | tig0025770:49472-49491 | Msa1424600:intron | 35.0% |
| CAACACTTAACAAGATTGGA+GGG | + | tig0025770:49524-49543 | None:intergenic | 35.0% | |
| TCAACACTTAACAAGATTGG+AGG | + | tig0025770:49525-49544 | None:intergenic | 35.0% | |
| TTTGAAAGTTGTCTCCTATC+TGG | - | tig0025770:49565-49584 | Msa1424600:intron | 35.0% | |
| ATTTATAACGCTGTCCAGAT+AGG | + | tig0025770:49582-49601 | None:intergenic | 35.0% | |
| ATTGCTAAAGATCTCCTCTT+TGG | + | tig0025770:49625-49644 | None:intergenic | 35.0% | |
| AAGAGGAGATCTTTAGCAAT+AGG | - | tig0025770:49625-49644 | Msa1424600:intron | 35.0% | |
| GAGATCACTGTGTTAGAAAT+AGG | + | tig0025770:49778-49797 | None:intergenic | 35.0% | |
| CATAGAGAATAATAGCATGC+TGG | - | tig0025770:49797-49816 | Msa1424600:intron | 35.0% | |
| TAACGGAATACTTTGCTCAA+AGG | + | tig0025770:49838-49857 | None:intergenic | 35.0% | |
| ATTGTCTCAATAACCGGTAA+CGG | + | tig0025770:49855-49874 | None:intergenic | 35.0% | |
| TGTTGCATTGTCTCAATAAC+CGG | + | tig0025770:49861-49880 | None:intergenic | 35.0% | |
| GTTATTGAGACAATGCAACA+AGG | - | tig0025770:49861-49880 | Msa1424600:intron | 35.0% | |
| AAGGAGTTTACTGCGTTATT+AGG | + | tig0025770:49934-49953 | None:intergenic | 35.0% | |
| GTAAACTCCTTGTTGGATTT+AGG | - | tig0025770:49943-49962 | Msa1424600:intron | 35.0% | |
| AATAACTTCACTGAACTCTG+AGG | - | tig0025770:49972-49991 | Msa1424600:intron | 35.0% | |
| AATATGAAGTCAGTCAGGTA+AGG | + | tig0025770:50131-50150 | None:intergenic | 35.0% | |
| ATCTACTATGCATAATGGTG+CGG | - | tig0025770:50159-50178 | Msa1424600:intron | 35.0% | |
| ! | ATGCTTTATCTGTTGATTGG+TGG | - | tig0025770:50392-50411 | Msa1424600:CDS | 35.0% |
| TAATACAACAACCAAGCTAC+AGG | + | tig0025770:50562-50581 | None:intergenic | 35.0% | |
| AAAAACCAAGCCAGTGATTT+AGG | + | tig0025770:50721-50740 | None:intergenic | 35.0% | |
| !!! | TCAGTTTCATTTTTGGCTCT+AGG | - | tig0025770:50740-50759 | Msa1424600:intron | 35.0% |
| !!! | CAGTTTCATTTTTGGCTCTA+GGG | - | tig0025770:50741-50760 | Msa1424600:intron | 35.0% |
| AACACAAACCTATTAACGCA+AGG | + | tig0025770:50772-50791 | None:intergenic | 35.0% | |
| ! | TTTTACTGTAAACTGTCCAC+GGG | - | tig0025770:50791-50810 | Msa1424600:intron | 35.0% |
| ! | TAATTTTTGTTCCACTCTGC+AGG | - | tig0025770:51210-51229 | Msa1424600:CDS | 35.0% |
| !!! | TACAATGTTGTTTTCGGGTT+TGG | + | tig0025770:51359-51378 | None:intergenic | 35.0% |
| !! | TGCTGTTGCTTATGTTTTCA+TGG | - | tig0025770:51384-51403 | Msa1424600:intron | 35.0% |
| ATCCAATTACAGCATTCCAA+CGG | + | tig0025770:51512-51531 | None:intergenic | 35.0% | |
| AAACAAAACCGTCATATTCG+TGG | - | tig0025770:51605-51624 | Msa1424600:intron | 35.0% | |
| AGGACATATTGATACTTACG+AGG | - | tig0025770:51732-51751 | Msa1424600:five_prime_UTR | 35.0% | |
| ACGTTACATGGAAAGACTTT+AGG | + | tig0025770:51792-51811 | None:intergenic | 35.0% | |
| ATACAAAAACAGAGAGGCCA+CGG | + | tig0025770:48233-48252 | None:intergenic | 40.0% | |
| TAACTCTCTCTTTCTTCCTC+TGG | - | tig0025770:48265-48284 | Msa1424600:three_prime_UTR | 40.0% | |
| ! | ATGAGAAATGATGGGGAAGA+TGG | + | tig0025770:48382-48401 | None:intergenic | 40.0% |
| ATGGAGCATGAGAAATGATG+GGG | + | tig0025770:48389-48408 | None:intergenic | 40.0% | |
| CATGGAGCATGAGAAATGAT+GGG | + | tig0025770:48390-48409 | None:intergenic | 40.0% | |
| ATTTCTCATGCTCCATGGAA+TGG | - | tig0025770:48393-48412 | Msa1424600:intron | 40.0% | |
| CCAACAAGGAAGAGAAAGAA+AGG | + | tig0025770:48444-48463 | None:intergenic | 40.0% | |
| CCTTTCTTTCTCTTCCTTGT+TGG | - | tig0025770:48441-48460 | Msa1424600:intron | 40.0% | |
| AGCCAACACAATCTACTACT+TGG | - | tig0025770:48505-48524 | Msa1424600:CDS | 40.0% | |
| GGATGCCAAGAATAAAGAGT+TGG | + | tig0025770:48551-48570 | None:intergenic | 40.0% | |
| ATTCTTGGCATCCTTCTTCA+AGG | - | tig0025770:48558-48577 | Msa1424600:CDS | 40.0% | |
| GGCATCAATTCCTTCACATA+TGG | - | tig0025770:48594-48613 | Msa1424600:CDS | 40.0% | |
| AACGTCAAGACCATATGTGA+AGG | + | tig0025770:48607-48626 | None:intergenic | 40.0% | |
| AGAAACTCGGATGTTTGGAT+GGG | + | tig0025770:48716-48735 | None:intergenic | 40.0% | |
| AAGAAACTCGGATGTTTGGA+TGG | + | tig0025770:48717-48736 | None:intergenic | 40.0% | |
| TTGAATTGGAGGCAAAGAAG+AGG | + | tig0025770:48939-48958 | None:intergenic | 40.0% | |
| TCTTCTTTGCCTCCAATTCA+AGG | - | tig0025770:48938-48957 | Msa1424600:intron | 40.0% | |
| TAAACATTGGCGCCTTGAAT+TGG | + | tig0025770:48953-48972 | None:intergenic | 40.0% | |
| CACAGGACAGAATATTCTCA+CGG | + | tig0025770:48978-48997 | None:intergenic | 40.0% | |
| GAAAACAAAAGTTGCAGCAC+AGG | + | tig0025770:48995-49014 | None:intergenic | 40.0% | |
| ! | AGCCTAAGATCTCCGTTTTA+AGG | - | tig0025770:49049-49068 | Msa1424600:intron | 40.0% |
| ! | GCCTAAGATCTCCGTTTTAA+GGG | - | tig0025770:49050-49069 | Msa1424600:intron | 40.0% |
| ACCCTTAAAACGGAGATCTT+AGG | + | tig0025770:49054-49073 | None:intergenic | 40.0% | |
| AATCATTCCAGCAGAATTGC+AGG | + | tig0025770:49229-49248 | None:intergenic | 40.0% | |
| ! | ACGGTGAACTATCTGAAACT+TGG | + | tig0025770:49434-49453 | None:intergenic | 40.0% |
| TTTCAGATAGTTCACCGTCA+TGG | - | tig0025770:49436-49455 | Msa1424600:intron | 40.0% | |
| GGTTACCTTAAAATGCCTTC+TGG | + | tig0025770:49480-49499 | None:intergenic | 40.0% | |
| !! | AAGTGTTGAGAAACACAAGC+TGG | - | tig0025770:49536-49555 | Msa1424600:intron | 40.0% |
| ! | AGTGTTGAGAAACACAAGCT+GGG | - | tig0025770:49537-49556 | Msa1424600:intron | 40.0% |
| GGACAGCGTTATAAATGACA+AGG | - | tig0025770:49586-49605 | Msa1424600:intron | 40.0% | |
| ! | AATAGGCTGAAGTGTCATAG+AGG | - | tig0025770:49642-49661 | Msa1424600:intron | 40.0% |
| ! | ATAGGCTGAAGTGTCATAGA+GGG | - | tig0025770:49643-49662 | Msa1424600:intron | 40.0% |
| ! | TGAGCAAAGTATTCCGTTAC+CGG | - | tig0025770:49839-49858 | Msa1424600:intron | 40.0% |
| TAACGCAGTAAACTCCTTGT+TGG | - | tig0025770:49936-49955 | Msa1424600:intron | 40.0% | |
| GCTGCAGTTTCATGCATTAT+TGG | - | tig0025770:50467-50486 | Msa1424600:intron | 40.0% | |
| ACATGATCTCACCTCTAAGT+TGG | + | tig0025770:50516-50535 | None:intergenic | 40.0% | |
| AATCTTGTATGCCTGTAGCT+TGG | - | tig0025770:50548-50567 | Msa1424600:intron | 40.0% | |
| CTTCCCTCTGTAACATAGTT+TGG | - | tig0025770:50615-50634 | Msa1424600:CDS | 40.0% | |
| GTGCCAAACTATGTTACAGA+GGG | + | tig0025770:50621-50640 | None:intergenic | 40.0% | |
| AGTGCCAAACTATGTTACAG+AGG | + | tig0025770:50622-50641 | None:intergenic | 40.0% | |
| AAAGTAAAGGTCAGCTGAGT+CGG | + | tig0025770:50669-50688 | None:intergenic | 40.0% | |
| ACAATACTGTAGGACCACAA+AGG | - | tig0025770:50692-50711 | Msa1424600:intron | 40.0% | |
| CAATACTGTAGGACCACAAA+GGG | - | tig0025770:50693-50712 | Msa1424600:intron | 40.0% | |
| !!! | TTTCATTTTTGGCTCTAGGG+TGG | - | tig0025770:50744-50763 | Msa1424600:intron | 40.0% |
| AGCTTCCGGTTTCACATTTA+TGG | - | tig0025770:51025-51044 | Msa1424600:intron | 40.0% | |
| ACTCTGCAGGTAGATGTTTA+CGG | - | tig0025770:51223-51242 | Msa1424600:CDS | 40.0% | |
| TTTCTTACTCGCAGATACAC+TGG | - | tig0025770:51447-51466 | Msa1424600:CDS | 40.0% | |
| TCCAATTACAGCATTCCAAC+GGG | + | tig0025770:51511-51530 | None:intergenic | 40.0% | |
| !! | ATGATAGTAGCGTTGACCAG+AGG | + | tig0025770:48284-48303 | None:intergenic | 45.0% |
| CCATGGAGCATGAGAAATGA+TGG | + | tig0025770:48391-48410 | None:intergenic | 45.0% | |
| CCATCATTTCTCATGCTCCA+TGG | - | tig0025770:48388-48407 | Msa1424600:intron | 45.0% | |
| AAGGCATGACGAAATCAGCA+AGG | + | tig0025770:48425-48444 | None:intergenic | 45.0% | |
| GTGCAAGAGAGATACCAACA+AGG | + | tig0025770:48458-48477 | None:intergenic | 45.0% | |
| ! | GCTTCTTTGGCGTTTTACAG+AGG | - | tig0025770:48637-48656 | Msa1424600:intron | 45.0% |
| ATGTGTGATGTGAGCTGAGA+AGG | + | tig0025770:48817-48836 | None:intergenic | 45.0% | |
| CAGGTGAATTGTTCAGTGAG+AGG | - | tig0025770:49189-49208 | Msa1424600:intron | 45.0% | |
| TGTTCAGTGAGAGGTGATCT+TGG | - | tig0025770:49198-49217 | Msa1424600:intron | 45.0% | |
| TGCTAGACATATTGCACTCC+TGG | + | tig0025770:49407-49426 | None:intergenic | 45.0% | |
| GAGTGCAATATGTCTAGCAC+TGG | - | tig0025770:49408-49427 | Msa1424600:intron | 45.0% | |
| AAACGCTGCATGAAGTAGAC+TGG | + | tig0025770:49501-49520 | None:intergenic | 45.0% | |
| GAGACAATGCAACAAGGTCA+TGG | - | tig0025770:49867-49886 | Msa1424600:intron | 45.0% | |
| GTTGAACCTTTCCCAACACA+GGG | + | tig0025770:50000-50019 | None:intergenic | 45.0% | |
| GCACATTCTTGCCAACTTAG+AGG | - | tig0025770:50502-50521 | Msa1424600:intron | 45.0% | |
| GTAAACATCTACCTGCAGAG+TGG | + | tig0025770:51224-51243 | None:intergenic | 45.0% | |
| CTCTGCAGGTAGATGTTTAC+GGG | - | tig0025770:51224-51243 | Msa1424600:CDS | 45.0% | |
| CAGACGTTTGACAAGTGTGT+TGG | - | tig0025770:51249-51268 | Msa1424600:CDS | 45.0% | |
| GTTTGACAAGTGTGTTGGAG+TGG | - | tig0025770:51254-51273 | Msa1424600:CDS | 45.0% | |
| ACAAGTGTGTTGGAGTGGAT+GGG | - | tig0025770:51259-51278 | Msa1424600:CDS | 45.0% | |
| TTGGCCGTGATTGCAATTCA+AGG | - | tig0025770:51322-51341 | Msa1424600:intron | 45.0% | |
| ATAACTTGGTCTAGTCCCGT+TGG | - | tig0025770:51493-51512 | Msa1424600:intron | 45.0% | |
| TCCCGTTGGAATGCTGTAAT+TGG | - | tig0025770:51507-51526 | Msa1424600:intron | 45.0% | |
| GAGGAGAACCACGAATATGA+CGG | + | tig0025770:51616-51635 | None:intergenic | 45.0% | |
| AGACATCAACGGAGGCAACT+CGG | + | tig0025770:48209-48228 | None:intergenic | 50.0% | |
| GCAAGGTGAAGACCATTCCA+TGG | + | tig0025770:48408-48427 | None:intergenic | 50.0% | |
| CTTGGCATCCTTCTTCAAGG+TGG | - | tig0025770:48561-48580 | Msa1424600:CDS | 50.0% | |
| TTTGGATGGGAGAGTCGGAA+GGG | + | tig0025770:48703-48722 | None:intergenic | 50.0% | |
| GGATGTTTGGATGGGAGAGT+CGG | + | tig0025770:48708-48727 | None:intergenic | 50.0% | |
| ! | GATGCATCGAAGTGCCAATC+TGG | + | tig0025770:48908-48927 | None:intergenic | 50.0% |
| ACATTGGCGCCTTGAATTGG+AGG | + | tig0025770:48950-48969 | None:intergenic | 50.0% | |
| ATTCCAGCAGAATTGCAGGC+AGG | + | tig0025770:49225-49244 | None:intergenic | 50.0% | |
| ! | AAAGGAGCGTGACACCATGA+CGG | + | tig0025770:49453-49472 | None:intergenic | 50.0% |
| ! | CACGCTCCTTTTGATCCAGA+AGG | - | tig0025770:49462-49481 | Msa1424600:intron | 50.0% |
| GATTGAGGGAGAGTCCAAAG+AGG | - | tig0025770:49608-49627 | Msa1424600:intron | 50.0% | |
| GGTTGAACCTTTCCCAACAC+AGG | + | tig0025770:50001-50020 | None:intergenic | 50.0% | |
| CACTGCGTCCTTTGATTGTG+TGG | - | tig0025770:50638-50657 | Msa1424600:CDS | 50.0% | |
| CGGCTGTACCACACAATCAA+AGG | + | tig0025770:50649-50668 | None:intergenic | 50.0% | |
| AGTGATTTAGGCGCCCTTTG+TGG | + | tig0025770:50709-50728 | None:intergenic | 50.0% | |
| !! | ACAAAGGGCGCCTAAATCAC+TGG | - | tig0025770:50708-50727 | Msa1424600:intron | 50.0% |
| GGGTGGTTCCTTGCGTTAAT+AGG | - | tig0025770:50761-50780 | Msa1424600:intron | 50.0% | |
| GACAAGTGTGTTGGAGTGGA+TGG | - | tig0025770:51258-51277 | Msa1424600:CDS | 50.0% | |
| ACATCAACGGAGGCAACTCG+GGG | + | tig0025770:48207-48226 | None:intergenic | 55.0% | |
| GACATCAACGGAGGCAACTC+GGG | + | tig0025770:48208-48227 | None:intergenic | 55.0% | |
| GAGGCCACGGAAGACATCAA+CGG | + | tig0025770:48220-48239 | None:intergenic | 55.0% | |
| GTTTGGATGGGAGAGTCGGA+AGG | + | tig0025770:48704-48723 | None:intergenic | 55.0% | |
| !! | AACTCTGAGGTGCCCTGTGT+TGG | - | tig0025770:49985-50004 | Msa1424600:intron | 55.0% |
| !! | ACTCTGAGGTGCCCTGTGTT+GGG | - | tig0025770:49986-50005 | Msa1424600:intron | 55.0% |
| CGGACTGATGAATACACCCG+TGG | + | tig0025770:50810-50829 | None:intergenic | 55.0% | |
| CGGGTGTATTCATCAGTCCG+TGG | - | tig0025770:50810-50829 | Msa1424600:intron | 55.0% | |
| !! | CTGCTTAGCTCTGCAGCTTC+CGG | - | tig0025770:51011-51030 | Msa1424600:intron | 55.0% |
| TTCAGCAGCAGCAACGCTCG+TGG | + | tig0025770:48156-48175 | None:intergenic | 60.0% | |
| CATCAACGGAGGCAACTCGG+GGG | + | tig0025770:48206-48225 | None:intergenic | 60.0% | |
| GCCTCCGTTGATGTCTTCCG+TGG | - | tig0025770:48213-48232 | Msa1424600:three_prime_UTR | 60.0% | |
| GCCACGGAAGACATCAACGG+AGG | + | tig0025770:48217-48236 | None:intergenic | 60.0% | |
| GGACCTGCCTGCAATTCTGC+TGG | - | tig0025770:49219-49238 | Msa1424600:intron | 60.0% | |
| ! | GAGGTGCCCTGTGTTGGGAA+AGG | - | tig0025770:49991-50010 | Msa1424600:intron | 60.0% |
| ! | GGGCGCCTAAATCACTGGCT+TGG | - | tig0025770:50713-50732 | Msa1424600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025770 | gene | 48050 | 51812 | 48050 | ID=Msa1424600;Name=Msa1424600 |
| tig0025770 | mRNA | 48050 | 51812 | 48050 | ID=Msa1424600-mRNA-1;Parent=Msa1424600;Name=Msa1424600-mRNA-1;_AED=0.26;_eAED=0.26;_QI=94|0.9|0.81|1|0.8|0.63|11|316|381 |
| tig0025770 | exon | 48050 | 48401 | 48050 | ID=Msa1424600-mRNA-1:exon:3882;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 48487 | 48630 | 48487 | ID=Msa1424600-mRNA-1:exon:3881;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 48801 | 48892 | 48801 | ID=Msa1424600-mRNA-1:exon:3880;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 49080 | 49158 | 49080 | ID=Msa1424600-mRNA-1:exon:3879;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 49339 | 49405 | 49339 | ID=Msa1424600-mRNA-1:exon:3878;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 50369 | 50454 | 50369 | ID=Msa1424600-mRNA-1:exon:3877;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 50554 | 50670 | 50554 | ID=Msa1424600-mRNA-1:exon:3876;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 50886 | 51015 | 50886 | ID=Msa1424600-mRNA-1:exon:3875;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 51105 | 51282 | 51105 | ID=Msa1424600-mRNA-1:exon:3874;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 51400 | 51511 | 51400 | ID=Msa1424600-mRNA-1:exon:3873;Parent=Msa1424600-mRNA-1 |
| tig0025770 | exon | 51614 | 51812 | 51614 | ID=Msa1424600-mRNA-1:exon:3872;Parent=Msa1424600-mRNA-1 |
| tig0025770 | five_prime_UTR | 51719 | 51812 | 51719 | ID=Msa1424600-mRNA-1:five_prime_utr;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 51614 | 51718 | 51614 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 51400 | 51511 | 51400 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 51105 | 51282 | 51105 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 50886 | 51015 | 50886 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 50554 | 50670 | 50554 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 50369 | 50454 | 50369 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 49339 | 49405 | 49339 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 49080 | 49158 | 49080 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 48801 | 48892 | 48801 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 48487 | 48630 | 48487 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | CDS | 48366 | 48401 | 48366 | ID=Msa1424600-mRNA-1:cds;Parent=Msa1424600-mRNA-1 |
| tig0025770 | three_prime_UTR | 48050 | 48365 | 48050 | ID=Msa1424600-mRNA-1:three_prime_utr;Parent=Msa1424600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
