Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524310 | RHN71384.1 | 86.364 | 418 | 17 | 2 | 1 | 380 | 1 | 416 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524310 | sp|Q68CP4|HGNAT_HUMAN | 29.477 | 363 | 165 | 12 | 20 | 326 | 266 | 593 | 7.21e-27 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524310 | A0A396J3S6 | 86.364 | 418 | 17 | 2 | 1 | 380 | 1 | 416 | 0.0 | 714 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422650 | Msa0524310 | 0.829221 | 5.810105e-55 | -8.615850e-47 |
| Msa0422740 | Msa0524310 | 0.821238 | 4.490826e-53 | -8.615850e-47 |
| Msa0422960 | Msa0524310 | 0.825325 | 4.986159e-54 | -8.615850e-47 |
| Msa0468940 | Msa0524310 | 0.804401 | 2.198546e-49 | -8.615850e-47 |
| Msa0514750 | Msa0524310 | 0.822755 | 1.998602e-53 | -8.615850e-47 |
| Msa0524310 | Msa0524420 | 0.942081 | 1.348892e-101 | -8.615850e-47 |
| Msa0524310 | Msa1424600 | 0.926011 | 8.415781e-91 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524310 | MtrunA17_Chr3g0145661 | 86.364 | 418 | 17 | 2 | 1 | 380 | 1 | 416 | 0.0 | 714 |
| Msa0524310 | MtrunA17_Chr7g0214801 | 42.748 | 393 | 180 | 4 | 21 | 373 | 66 | 453 | 4.47e-113 | 337 |
| Msa0524310 | MtrunA17_Chr1g0195051 | 42.721 | 419 | 189 | 5 | 9 | 379 | 25 | 440 | 2.18e-111 | 333 |
| Msa0524310 | MtrunA17_Chr7g0272261 | 40.547 | 402 | 190 | 5 | 17 | 373 | 26 | 423 | 2.96e-100 | 305 |
| Msa0524310 | MtrunA17_Chr1g0180411 | 38.575 | 407 | 199 | 6 | 11 | 373 | 54 | 453 | 1.03e-94 | 291 |
| Msa0524310 | MtrunA17_Chr7g0264851 | 34.353 | 425 | 189 | 9 | 16 | 373 | 57 | 458 | 1.06e-71 | 232 |
| Msa0524310 | MtrunA17_Chr7g0264821 | 41.909 | 241 | 123 | 5 | 140 | 373 | 5 | 235 | 1.26e-60 | 197 |
| Msa0524310 | MtrunA17_Chr7g0264831 | 35.878 | 131 | 43 | 2 | 3 | 97 | 48 | 173 | 3.20e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524310 | AT5G47900.9 | 46.247 | 413 | 171 | 5 | 6 | 373 | 30 | 436 | 9.72e-119 | 352 |
| Msa0524310 | AT5G47900.1 | 46.247 | 413 | 171 | 5 | 6 | 373 | 30 | 436 | 9.72e-119 | 352 |
| Msa0524310 | AT5G47900.10 | 46.736 | 383 | 153 | 5 | 36 | 373 | 1 | 377 | 1.63e-111 | 331 |
| Msa0524310 | AT5G47900.6 | 49.515 | 309 | 141 | 4 | 74 | 373 | 34 | 336 | 3.99e-99 | 298 |
| Msa0524310 | AT5G27730.1 | 40.955 | 398 | 187 | 5 | 20 | 373 | 35 | 428 | 1.94e-97 | 298 |
| Msa0524310 | AT5G47900.8 | 45.028 | 362 | 148 | 5 | 6 | 322 | 30 | 385 | 9.70e-97 | 294 |
| Msa0524310 | AT5G47900.4 | 40.047 | 422 | 185 | 8 | 6 | 373 | 24 | 431 | 2.78e-96 | 294 |
| Msa0524310 | AT5G47900.7 | 41.103 | 399 | 147 | 6 | 6 | 322 | 30 | 422 | 1.64e-89 | 276 |
| Msa0524310 | AT5G27730.3 | 43.516 | 347 | 148 | 5 | 20 | 322 | 35 | 377 | 1.51e-87 | 270 |
| Msa0524310 | AT5G47900.11 | 50.000 | 256 | 115 | 3 | 125 | 373 | 3 | 252 | 5.66e-82 | 251 |
| Msa0524310 | AT5G27730.4 | 43.960 | 298 | 120 | 4 | 20 | 274 | 35 | 328 | 1.37e-80 | 251 |
| Msa0524310 | AT5G47900.2 | 43.421 | 304 | 121 | 5 | 6 | 264 | 30 | 327 | 1.08e-78 | 246 |
| Msa0524310 | AT5G27730.2 | 41.083 | 314 | 173 | 4 | 68 | 373 | 38 | 347 | 2.40e-76 | 241 |
| Msa0524310 | AT5G27730.5 | 44.487 | 263 | 134 | 4 | 68 | 322 | 38 | 296 | 2.88e-66 | 213 |
| Msa0524310 | AT5G47900.3 | 42.742 | 248 | 96 | 4 | 6 | 213 | 30 | 271 | 7.92e-58 | 190 |
| Msa0524310 | AT5G47900.5 | 42.231 | 251 | 96 | 4 | 6 | 213 | 30 | 274 | 2.03e-57 | 189 |
Find 102 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCCGGTTTCACATTTA+TGG | 0.131675 | 3_4:+77797415 | Msa0524310:CDS |
| GACTTATTGAATTGTATTAT+TGG | 0.160430 | 3_4:+77798045 | Msa0524310:three_prime_UTR |
| TGCATTATTGGACTTCAATA+TGG | 0.179392 | 3_4:+77796869 | Msa0524310:CDS |
| GCTGCAGTTTCATGCATTAT+TGG | 0.191483 | 3_4:+77796857 | Msa0524310:CDS |
| CTTATGATATTTGTCGATTA+TGG | 0.223955 | 3_4:+77794717 | Msa0524310:CDS |
| TCCCGTTGGAATGCTGTAAT+TGG | 0.226963 | 3_4:+77797897 | Msa0524310:three_prime_UTR |
| CCTTTCTTTCTCTTCCTTGT+TGG | 0.247561 | 3_4:+77794807 | Msa0524310:CDS |
| CTGCTTAGCTCTGCAGCTTC+CGG | 0.284725 | 3_4:+77797401 | Msa0524310:CDS |
| GTTCAAACTATACGCTTCTT+TGG | 0.296079 | 3_4:+77794984 | Msa0524310:CDS |
| ACGTTACATGGAAAGACTTT+AGG | 0.299486 | 3_4:-77798179 | None:intergenic |
| GGGTGGTTCCTTGCGTTAAT+AGG | 0.300918 | 3_4:+77797151 | Msa0524310:CDS |
| ATGATTGATCGCTATATTCT+TGG | 0.323341 | 3_4:+77795633 | Msa0524310:CDS |
| GGTTACCTTAAAATGCCTTC+TGG | 0.328597 | 3_4:-77795867 | None:intergenic |
| AATACAATTCAATAAGTCTT+AGG | 0.333014 | 3_4:-77798040 | None:intergenic |
| TTTGAAGAAACTCGGATGTT+TGG | 0.338485 | 3_4:-77795078 | None:intergenic |
| ATTTATGGCTTTATATATTC+TGG | 0.342580 | 3_4:+77797430 | Msa0524310:CDS |
| GTGTACAGAGATTTATTTAG+AGG | 0.350332 | 3_4:-77797365 | None:intergenic |
| GCACATTCTTGCCAACTTAG+AGG | 0.363831 | 3_4:+77796892 | Msa0524310:CDS |
| TAAACATTGGCGCCTTGAAT+TGG | 0.371732 | 3_4:-77795309 | None:intergenic |
| TCTTCTTTGCCTCCAATTCA+AGG | 0.372683 | 3_4:+77795297 | Msa0524310:CDS |
| ACTCTGCAGGTAGATGTTTA+CGG | 0.374686 | 3_4:+77797613 | Msa0524310:intron |
| ACCTTAAGATTTCTGAAAAC+AGG | 0.377103 | 3_4:-77795678 | None:intergenic |
| AATCATTCCAGCAGAATTGC+AGG | 0.385868 | 3_4:-77795616 | None:intergenic |
| CTCTGCAGGTAGATGTTTAC+GGG | 0.398068 | 3_4:+77797614 | Msa0524310:intron |
| GCATTATTGGACTTCAATAT+GGG | 0.409722 | 3_4:+77796870 | Msa0524310:CDS |
| TGTTCAGTGAGAGGTGATCT+TGG | 0.410959 | 3_4:+77795588 | Msa0524310:CDS |
| GATGCATCGAAGTGCCAATC+TGG | 0.416971 | 3_4:-77795264 | None:intergenic |
| GGAGTATAATATACGTAAGT+AGG | 0.425257 | 3_4:+77794460 | Msa0524310:five_prime_UTR |
| GACATCAACGGAGGCAACTC+GGG | 0.437406 | 3_4:-77794593 | None:intergenic |
| ATTTACTCCGGATTGTTGTA+TGG | 0.438927 | 3_4:+77795231 | Msa0524310:CDS |
| TCCAATTACAGCATTCCAAC+GGG | 0.448756 | 3_4:-77797898 | None:intergenic |
| GACAAGTGTGTTGGAGTGGA+TGG | 0.450359 | 3_4:+77797648 | Msa0524310:CDS |
| CCATGGAGCATGAGAAATGA+TGG | 0.451821 | 3_4:-77794754 | None:intergenic |
| TGTTCTTGTATCTTCAAACT+TGG | 0.454466 | 3_4:+77797693 | Msa0524310:CDS |
| TAAAGCCATAAATGTGAAAC+CGG | 0.454471 | 3_4:-77797420 | None:intergenic |
| GGACCTGCCTGCAATTCTGC+TGG | 0.460227 | 3_4:+77795609 | Msa0524310:CDS |
| GTTAAAGAAAGAAGATGAGA+GGG | 0.460535 | 3_4:+77794438 | Msa0524310:five_prime_UTR |
| CAATATGTCCTATTCTAATA+CGG | 0.463441 | 3_4:-77798110 | None:intergenic |
| ATTCAAAATTAGACGTTACA+TGG | 0.464007 | 3_4:-77798191 | None:intergenic |
| AAAATGCCTTCTGGATCAAA+AGG | 0.469212 | 3_4:-77795858 | None:intergenic |
| GGCATCAATTCCTTCACATA+TGG | 0.470691 | 3_4:+77794954 | Msa0524310:CDS |
| GTTTCTAGCAGCAATATTGT+TGG | 0.471022 | 3_4:+77795206 | Msa0524310:CDS |
| TCAAAACTTATTACTCCCAT+TGG | 0.476105 | 3_4:+77795096 | Msa0524310:CDS |
| TTGGCCGTGATTGCAATTCA+AGG | 0.479960 | 3_4:+77797712 | Msa0524310:CDS |
| ACATTGGCGCCTTGAATTGG+AGG | 0.491113 | 3_4:-77795306 | None:intergenic |
| AGACATCAACGGAGGCAACT+CGG | 0.491228 | 3_4:-77794594 | None:intergenic |
| AAGAAACTCGGATGTTTGGA+TGG | 0.491252 | 3_4:-77795074 | None:intergenic |
| ATGAGAAATGATGGGGAAGA+TGG | 0.492402 | 3_4:-77794745 | None:intergenic |
| TTAGGAGTAGATAAGTTATG+AGG | 0.493354 | 3_4:-77798022 | None:intergenic |
| ATGGTCTATATGTTCCAGAT+TGG | 0.496797 | 3_4:+77795250 | Msa0524310:CDS |
| ATCTATCTGTCAAAGAAGAA+TGG | 0.497946 | 3_4:+77794516 | Msa0524310:exon |
| CCATCATTTCTCATGCTCCA+TGG | 0.501869 | 3_4:+77794754 | Msa0524310:CDS |
| AGTGATTTAGGCGCCCTTTG+TGG | 0.507807 | 3_4:-77797096 | None:intergenic |
| AAACAAAACCGTCATATTCG+TGG | 0.509244 | 3_4:+77797995 | Msa0524310:three_prime_UTR |
| CCAACAAGGAAGAGAAAGAA+AGG | 0.513124 | 3_4:-77794807 | None:intergenic |
| ATTTCTCATGCTCCATGGAA+TGG | 0.517246 | 3_4:+77794759 | Msa0524310:CDS |
| AGATTTCAACACAAATAACT+TGG | 0.518079 | 3_4:+77797869 | Msa0524310:exon |
| ACATGATCTCACCTCTAAGT+TGG | 0.518261 | 3_4:-77796903 | None:intergenic |
| ACAAAGGGCGCCTAAATCAC+TGG | 0.519041 | 3_4:+77797098 | Msa0524310:CDS |
| CAATACTGTAGGACCACAAA+GGG | 0.522623 | 3_4:+77797083 | Msa0524310:intron |
| TTTCTTACTCGCAGATACAC+TGG | 0.523759 | 3_4:+77797837 | Msa0524310:intron |
| GGGCGCCTAAATCACTGGCT+TGG | 0.529127 | 3_4:+77797103 | Msa0524310:CDS |
| ACGGTGAACTATCTGAAACT+TGG | 0.530146 | 3_4:-77795821 | None:intergenic |
| ATGATATTTGTCGATTATGG+TGG | 0.535720 | 3_4:+77794720 | Msa0524310:CDS |
| AGTTAAAGAAAGAAGATGAG+AGG | 0.540378 | 3_4:+77794437 | Msa0524310:five_prime_UTR |
| ATATTGTTGGCAATTTACTC+CGG | 0.555052 | 3_4:+77795219 | Msa0524310:CDS |
| CAGACGTTTGACAAGTGTGT+TGG | 0.557488 | 3_4:+77797639 | Msa0524310:CDS |
| ACAAGTGTGTTGGAGTGGAT+GGG | 0.559908 | 3_4:+77797649 | Msa0524310:CDS |
| AAATCCTTGAATTGCAATCA+CGG | 0.562969 | 3_4:-77797716 | None:intergenic |
| GAGTGCAATATGTCTAGCAC+TGG | 0.569204 | 3_4:+77795798 | Msa0524310:CDS |
| CATGGAGCATGAGAAATGAT+GGG | 0.571546 | 3_4:-77794753 | None:intergenic |
| TTTCAGATAGTTCACCGTCA+TGG | 0.572351 | 3_4:+77795826 | Msa0524310:CDS |
| GCAAGGTGAAGACCATTCCA+TGG | 0.582375 | 3_4:-77794771 | None:intergenic |
| AGAAACTCGGATGTTTGGAT+GGG | 0.586314 | 3_4:-77795073 | None:intergenic |
| ATAACTTGGTCTAGTCCCGT+TGG | 0.587653 | 3_4:+77797883 | Msa0524310:exon |
| ATCCAATTACAGCATTCCAA+CGG | 0.588026 | 3_4:-77797899 | None:intergenic |
| GCCTCCGTTGATGTCTTCCG+TGG | 0.591050 | 3_4:+77794601 | Msa0524310:CDS |
| GGATGTTTGGATGGGAGAGT+CGG | 0.594308 | 3_4:-77795065 | None:intergenic |
| TATTCTCACGGTGTAAACAT+TGG | 0.594566 | 3_4:-77795322 | None:intergenic |
| ATATAGACCATACAACAATC+CGG | 0.597198 | 3_4:-77795238 | None:intergenic |
| AACACAAACCTATTAACGCA+AGG | 0.613812 | 3_4:-77797159 | None:intergenic |
| TTCAGCAGCAGCAACGCTCG+TGG | 0.615336 | 3_4:-77794544 | None:intergenic |
| CAGGTGAATTGTTCAGTGAG+AGG | 0.616782 | 3_4:+77795579 | Msa0524310:intron |
| AACGTCAAGACCATATGTGA+AGG | 0.617892 | 3_4:-77794964 | None:intergenic |
| TAATATACGTAAGTAGGTAG+CGG | 0.618417 | 3_4:+77794466 | Msa0524310:five_prime_UTR |
| GAGGAGAACCACGAATATGA+CGG | 0.625274 | 3_4:-77798003 | None:intergenic |
| ATTCCAGCAGAATTGCAGGC+AGG | 0.625616 | 3_4:-77795612 | None:intergenic |
| GTTTGGATGGGAGAGTCGGA+AGG | 0.629743 | 3_4:-77795061 | None:intergenic |
| TTAAAGAAAGAAGATGAGAG+GGG | 0.630173 | 3_4:+77794439 | Msa0524310:five_prime_UTR |
| ACATCAACGGAGGCAACTCG+GGG | 0.631918 | 3_4:-77794592 | None:intergenic |
| GTTTGACAAGTGTGTTGGAG+TGG | 0.639516 | 3_4:+77797644 | Msa0524310:CDS |
| ACAATACTGTAGGACCACAA+AGG | 0.644164 | 3_4:+77797082 | Msa0524310:intron |
| TTGAATTGGAGGCAAAGAAG+AGG | 0.646002 | 3_4:-77795295 | None:intergenic |
| TCTAAATAAATCTCTGTACA+CGG | 0.654333 | 3_4:+77797367 | Msa0524310:CDS |
| GAGGCCACGGAAGACATCAA+CGG | 0.666744 | 3_4:-77794605 | None:intergenic |
| ATGGAGCATGAGAAATGATG+GGG | 0.677643 | 3_4:-77794752 | None:intergenic |
| AAAGGAGCGTGACACCATGA+CGG | 0.685895 | 3_4:-77795840 | None:intergenic |
| AAGGCATGACGAAATCAGCA+AGG | 0.697375 | 3_4:-77794788 | None:intergenic |
| GCCACGGAAGACATCAACGG+AGG | 0.698738 | 3_4:-77794602 | None:intergenic |
| AGGACATATTGATACTTACG+AGG | 0.716429 | 3_4:+77798122 | Msa0524310:three_prime_UTR |
| GTGCAAGAGAGATACCAACA+AGG | 0.751478 | 3_4:-77794821 | None:intergenic |
| CATCAACGGAGGCAACTCGG+GGG | 0.763652 | 3_4:-77794591 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGATAATACTAATAAAA+TGG | - | chr3_4:77796621-77796640 | None:intergenic | 10.0% |
| !!! | TAATTTAGTTTTTAACTTAA+TGG | + | chr3_4:77796970-77796989 | Msa0524310:intron | 10.0% |
| !! | AACAAAAATTATATATAACA+TGG | - | chr3_4:77797591-77797610 | None:intergenic | 10.0% |
| !!! | TTTCTTTTAAACATAATAAC+AGG | + | chr3_4:77795560-77795579 | Msa0524310:intron | 15.0% |
| !!! | GTTATAAAATTTTGTAATCA+AGG | - | chr3_4:77795772-77795791 | None:intergenic | 15.0% |
| !!! | TATCTATTGTAATTTGTAAA+AGG | + | chr3_4:77796633-77796652 | Msa0524310:intron | 15.0% |
| !! | TATATATAACATGGTTAAAT+AGG | - | chr3_4:77797582-77797601 | None:intergenic | 15.0% |
| !! | AATATAGTTAATTGTTTGTT+GGG | - | chr3_4:77797804-77797823 | None:intergenic | 15.0% |
| !! | AAACAATTAACTATATTGTT+TGG | + | chr3_4:77797807-77797826 | Msa0524310:intron | 15.0% |
| !!! | TAATAAGTTTTGAAGAAACT+CGG | - | chr3_4:77795089-77795108 | None:intergenic | 20.0% |
| !! | AAATAAATAATAGTGTGCAT+TGG | - | chr3_4:77795502-77795521 | None:intergenic | 20.0% |
| !! | AATCATAAACAAAAATCACA+AGG | - | chr3_4:77795538-77795557 | None:intergenic | 20.0% |
| !!! | TACAAAATTTTATAACTTCC+AGG | + | chr3_4:77795776-77795795 | Msa0524310:intron | 20.0% |
| !! | CAATTCACTATTTACTAATA+TGG | + | chr3_4:77796123-77796142 | Msa0524310:intron | 20.0% |
| !! | GTTTAAAAGAAAAATCAATC+AGG | - | chr3_4:77796300-77796319 | None:intergenic | 20.0% |
| !! | AGTAAGTTAATTAAGTATGA+TGG | - | chr3_4:77796412-77796431 | None:intergenic | 20.0% |
| !!! | AGAATAAAAAAAGTGTAAAG+GGG | - | chr3_4:77796709-77796728 | None:intergenic | 20.0% |
| !!! | GAGAATAAAAAAAGTGTAAA+GGG | - | chr3_4:77796710-77796729 | None:intergenic | 20.0% |
| !!! | AGAGAATAAAAAAAGTGTAA+AGG | - | chr3_4:77796711-77796730 | None:intergenic | 20.0% |
| !! | TTAAACCGAAAATTATATGA+TGG | + | chr3_4:77796755-77796774 | Msa0524310:intron | 20.0% |
| !!! | TACAACCATCATATAATTTT+CGG | - | chr3_4:77796763-77796782 | None:intergenic | 20.0% |
| !!! | ATTTATGGCTTTATATATTC+TGG | + | chr3_4:77797430-77797449 | Msa0524310:CDS | 20.0% |
| !!! | AAATCTTACAATGTTGTTTT+CGG | - | chr3_4:77797755-77797774 | None:intergenic | 20.0% |
| !! | CAATATAGTTAATTGTTTGT+TGG | - | chr3_4:77797805-77797824 | None:intergenic | 20.0% |
| !! | AATACAATTCAATAAGTCTT+AGG | - | chr3_4:77798043-77798062 | None:intergenic | 20.0% |
| !! | GACTTATTGAATTGTATTAT+TGG | + | chr3_4:77798045-77798064 | Msa0524310:three_prime_UTR | 20.0% |
| !! | AAAAAAAATGGAAAGACTTT+AGG | - | chr3_4:77798149-77798168 | None:intergenic | 20.0% |
| !! | CTTATGATATTTGTCGATTA+TGG | + | chr3_4:77794717-77794736 | Msa0524310:CDS | 25.0% |
| ! | TAACTAACTAACTAACCAAT+GGG | - | chr3_4:77795114-77795133 | None:intergenic | 25.0% |
| ! | AATGTGTGATATTACTAAGA+AGG | - | chr3_4:77795177-77795196 | None:intergenic | 25.0% |
| !! | AATATCACACATTTTTATGC+AGG | + | chr3_4:77795184-77795203 | Msa0524310:intron | 25.0% |
| ! | GAAATTCAAAACCCTTAAAA+CGG | - | chr3_4:77795451-77795470 | None:intergenic | 25.0% |
| !! | AAACAGGCTTTTTGTATAAA+TGG | - | chr3_4:77795665-77795684 | None:intergenic | 25.0% |
| ! | AAGAAATGGGATCATTTATA+AGG | - | chr3_4:77795705-77795724 | None:intergenic | 25.0% |
| ! | AAACCATTGAACAAAGAAAT+GGG | - | chr3_4:77795718-77795737 | None:intergenic | 25.0% |
| ! | TAAACCATTGAACAAAGAAA+TGG | - | chr3_4:77795719-77795738 | None:intergenic | 25.0% |
| ! | TTATAAATGACAAGGATTGA+GGG | + | chr3_4:77795984-77796003 | Msa0524310:intron | 25.0% |
| !!! | TTTTCTACTTTTGAAAAGAC+TGG | + | chr3_4:77796477-77796496 | Msa0524310:intron | 25.0% |
| !!! | TTTCTACTTTTGAAAAGACT+GGG | + | chr3_4:77796478-77796497 | Msa0524310:intron | 25.0% |
| ! | TTGTTATCTACTATGCATAA+TGG | + | chr3_4:77796544-77796563 | Msa0524310:intron | 25.0% |
| !! | GAATAAAAAAAGTGTAAAGG+GGG | - | chr3_4:77796708-77796727 | None:intergenic | 25.0% |
| ! | ACAGTATTGTAGAAAAGTAA+AGG | - | chr3_4:77797072-77797091 | None:intergenic | 25.0% |
| !!! | TTACTTTTCTACAATACTGT+AGG | + | chr3_4:77797072-77797091 | Msa0524310:intron | 25.0% |
| !!! | TGGTTTTTCAGTTTCATTTT+TGG | + | chr3_4:77797123-77797142 | Msa0524310:CDS | 25.0% |
| !!! | ATCAGTTGGTAACTTATATT+AGG | - | chr3_4:77797230-77797249 | None:intergenic | 25.0% |
| ! | ATACTTGAATCATTATCAGT+TGG | - | chr3_4:77797244-77797263 | None:intergenic | 25.0% |
| !! | GTATTTTCTCTTCATTATCA+TGG | + | chr3_4:77797260-77797279 | Msa0524310:intron | 25.0% |
| !!! | TTTTTTTGCTTTTTGTTTCC+AGG | + | chr3_4:77797338-77797357 | Msa0524310:intron | 25.0% |
| ! | TCTAAATAAATCTCTGTACA+CGG | + | chr3_4:77797367-77797386 | Msa0524310:CDS | 25.0% |
| ! | TGTGACAATAGAAAATTATC+TGG | + | chr3_4:77797467-77797486 | Msa0524310:intron | 25.0% |
| ! | ATCAAAAGATGCAAAGTATA+AGG | - | chr3_4:77797509-77797528 | None:intergenic | 25.0% |
| !!! | AATCTTACAATGTTGTTTTC+GGG | - | chr3_4:77797754-77797773 | None:intergenic | 25.0% |
| ! | AGATTTCAACACAAATAACT+TGG | + | chr3_4:77797869-77797888 | Msa0524310:exon | 25.0% |
| !! | TTTTCAATCCGTATTAGAAT+AGG | + | chr3_4:77798102-77798121 | Msa0524310:three_prime_UTR | 25.0% |
| ! | CAATATGTCCTATTCTAATA+CGG | - | chr3_4:77798113-77798132 | None:intergenic | 25.0% |
| ! | GGTTCTCTCAAAAAAAAAAA+TGG | - | chr3_4:77798161-77798180 | None:intergenic | 25.0% |
| AGTTAAAGAAAGAAGATGAG+AGG | + | chr3_4:77794437-77794456 | Msa0524310:five_prime_UTR | 30.0% | |
| GTTAAAGAAAGAAGATGAGA+GGG | + | chr3_4:77794438-77794457 | Msa0524310:five_prime_UTR | 30.0% | |
| TTAAAGAAAGAAGATGAGAG+GGG | + | chr3_4:77794439-77794458 | Msa0524310:five_prime_UTR | 30.0% | |
| GGAGTATAATATACGTAAGT+AGG | + | chr3_4:77794460-77794479 | Msa0524310:five_prime_UTR | 30.0% | |
| TAATATACGTAAGTAGGTAG+CGG | + | chr3_4:77794466-77794485 | Msa0524310:five_prime_UTR | 30.0% | |
| ATCTATCTGTCAAAGAAGAA+TGG | + | chr3_4:77794516-77794535 | Msa0524310:exon | 30.0% | |
| ! | ATGATATTTGTCGATTATGG+TGG | + | chr3_4:77794720-77794739 | Msa0524310:CDS | 30.0% |
| AGTTGGAATGATCTAAGTAA+TGG | - | chr3_4:77794894-77794913 | None:intergenic | 30.0% | |
| TCATTCCAACTCTTTATTCT+TGG | + | chr3_4:77794903-77794922 | Msa0524310:intron | 30.0% | |
| ! | GTTTTACAGAGGATTTCTAT+TGG | + | chr3_4:77795008-77795027 | Msa0524310:CDS | 30.0% |
| TCAAAACTTATTACTCCCAT+TGG | + | chr3_4:77795096-77795115 | Msa0524310:CDS | 30.0% | |
| CTAACTAACTAACTAACCAA+TGG | - | chr3_4:77795115-77795134 | None:intergenic | 30.0% | |
| ATATTGTTGGCAATTTACTC+CGG | + | chr3_4:77795219-77795238 | Msa0524310:CDS | 30.0% | |
| ATATAGACCATACAACAATC+CGG | - | chr3_4:77795241-77795260 | None:intergenic | 30.0% | |
| ACAGAATAAATAGCTAAGTG+GGG | - | chr3_4:77795359-77795378 | None:intergenic | 30.0% | |
| GACAGAATAAATAGCTAAGT+GGG | - | chr3_4:77795360-77795379 | None:intergenic | 30.0% | |
| ! | AAATCACAAGGTCAACATTT+TGG | - | chr3_4:77795526-77795545 | None:intergenic | 30.0% |
| ATGATTGATCGCTATATTCT+TGG | + | chr3_4:77795633-77795652 | Msa0524310:CDS | 30.0% | |
| ! | ACCTTAAGATTTCTGAAAAC+AGG | - | chr3_4:77795681-77795700 | None:intergenic | 30.0% |
| TTCTCAACACTTAACAAGAT+TGG | - | chr3_4:77795918-77795937 | None:intergenic | 30.0% | |
| GTTATAAATGACAAGGATTG+AGG | + | chr3_4:77795983-77796002 | Msa0524310:intron | 30.0% | |
| TAGTGAATTGAGTGATGAAA+AGG | - | chr3_4:77796113-77796132 | None:intergenic | 30.0% | |
| TATTAAGCCTAAATCCAACA+AGG | - | chr3_4:77796343-77796362 | None:intergenic | 30.0% | |
| AAACAAATATGAAGTCAGTC+AGG | - | chr3_4:77796526-77796545 | None:intergenic | 30.0% | |
| TCATAGAAGAAATGAATGCA+AGG | - | chr3_4:77796587-77796606 | None:intergenic | 30.0% | |
| AAAATCTGCAACTTATTCAG+TGG | - | chr3_4:77796667-77796686 | None:intergenic | 30.0% | |
| ! | CTGAATAAGTTGCAGATTTT+TGG | + | chr3_4:77796667-77796686 | Msa0524310:intron | 30.0% |
| !! | AATAAGTTGCAGATTTTTGG+TGG | + | chr3_4:77796670-77796689 | Msa0524310:intron | 30.0% |
| TGTATGCTTTATCTGTTGAT+TGG | + | chr3_4:77796779-77796798 | Msa0524310:intron | 30.0% | |
| TGCATTATTGGACTTCAATA+TGG | + | chr3_4:77796869-77796888 | Msa0524310:CDS | 30.0% | |
| GCATTATTGGACTTCAATAT+GGG | + | chr3_4:77796870-77796889 | Msa0524310:CDS | 30.0% | |
| ! | TTTTTACTGTAAACTGTCCA+CGG | + | chr3_4:77797180-77797199 | Msa0524310:intron | 30.0% |
| AACTTATATTAGGTTCTCCA+CGG | - | chr3_4:77797220-77797239 | None:intergenic | 30.0% | |
| GATTTATTTAGAGGAATTCC+TGG | - | chr3_4:77797359-77797378 | None:intergenic | 30.0% | |
| GTGTACAGAGATTTATTTAG+AGG | - | chr3_4:77797368-77797387 | None:intergenic | 30.0% | |
| TAAAGCCATAAATGTGAAAC+CGG | - | chr3_4:77797423-77797442 | None:intergenic | 30.0% | |
| GATTTAAGCATCAGTCTTTA+AGG | + | chr3_4:77797526-77797545 | Msa0524310:intron | 30.0% | |
| TGTTCTTGTATCTTCAAACT+TGG | + | chr3_4:77797693-77797712 | Msa0524310:CDS | 30.0% | |
| AAATCCTTGAATTGCAATCA+CGG | - | chr3_4:77797719-77797738 | None:intergenic | 30.0% | |
| ! | ATAGTTAATTGTTTGTTGGG+AGG | - | chr3_4:77797801-77797820 | None:intergenic | 30.0% |
| TTAGGAGTAGATAAGTTATG+AGG | - | chr3_4:77798025-77798044 | None:intergenic | 30.0% | |
| GAGTACATACAAAAACAGAG+AGG | - | chr3_4:77794627-77794646 | None:intergenic | 35.0% | |
| TTCCAAGTAGTAGATTGTGT+TGG | - | chr3_4:77794870-77794889 | None:intergenic | 35.0% | |
| GAAAATAACCACCTTGAAGA+AGG | - | chr3_4:77794932-77794951 | None:intergenic | 35.0% | |
| !! | CTTCAAGGTGGTTATTTTCA+CGG | + | chr3_4:77794933-77794952 | Msa0524310:intron | 35.0% |
| GTTCAAACTATACGCTTCTT+TGG | + | chr3_4:77794984-77795003 | Msa0524310:CDS | 35.0% | |
| TTTGAAGAAACTCGGATGTT+TGG | - | chr3_4:77795081-77795100 | None:intergenic | 35.0% | |
| !! | GTTTCTAGCAGCAATATTGT+TGG | + | chr3_4:77795206-77795225 | Msa0524310:CDS | 35.0% |
| ATTTACTCCGGATTGTTGTA+TGG | + | chr3_4:77795231-77795250 | Msa0524310:CDS | 35.0% | |
| ATGGTCTATATGTTCCAGAT+TGG | + | chr3_4:77795250-77795269 | Msa0524310:CDS | 35.0% | |
| TATTCTCACGGTGTAAACAT+TGG | - | chr3_4:77795325-77795344 | None:intergenic | 35.0% | |
| AATGTTTACACCGTGAGAAT+AGG | + | chr3_4:77795324-77795343 | Msa0524310:intron | 35.0% | |
| AGAATAAATAGCTAAGTGGG+GGG | - | chr3_4:77795357-77795376 | None:intergenic | 35.0% | |
| CAGAATAAATAGCTAAGTGG+GGG | - | chr3_4:77795358-77795377 | None:intergenic | 35.0% | |
| GGACAGAATAAATAGCTAAG+TGG | - | chr3_4:77795361-77795380 | None:intergenic | 35.0% | |
| ACCAAGTTTCACTTTGTAGA+TGG | + | chr3_4:77795472-77795491 | Msa0524310:intron | 35.0% | |
| ACCATCTACAAAGTGAAACT+TGG | - | chr3_4:77795476-77795495 | None:intergenic | 35.0% | |
| ! | GCCTGTTTTCAGAAATCTTA+AGG | + | chr3_4:77795677-77795696 | Msa0524310:CDS | 35.0% |
| GATCCCATTTCTTTGTTCAA+TGG | + | chr3_4:77795712-77795731 | Msa0524310:intron | 35.0% | |
| AAAATGCCTTCTGGATCAAA+AGG | - | chr3_4:77795861-77795880 | None:intergenic | 35.0% | |
| !!! | TTGATCCAGAAGGCATTTTA+AGG | + | chr3_4:77795862-77795881 | Msa0524310:CDS | 35.0% |
| CAACACTTAACAAGATTGGA+GGG | - | chr3_4:77795914-77795933 | None:intergenic | 35.0% | |
| TCAACACTTAACAAGATTGG+AGG | - | chr3_4:77795915-77795934 | None:intergenic | 35.0% | |
| TTTGAAAGTTGTCTCCTATC+TGG | + | chr3_4:77795955-77795974 | Msa0524310:intron | 35.0% | |
| ATTTATAACGCTGTCCAGAT+AGG | - | chr3_4:77795972-77795991 | None:intergenic | 35.0% | |
| ATTGCTAAAGATCTCCTCTT+TGG | - | chr3_4:77796015-77796034 | None:intergenic | 35.0% | |
| AAGAGGAGATCTTTAGCAAT+AGG | + | chr3_4:77796015-77796034 | Msa0524310:intron | 35.0% | |
| GAGATCACTGTGTTAGAAAT+AGG | - | chr3_4:77796168-77796187 | None:intergenic | 35.0% | |
| CATAGAGAATAATAGCATGC+TGG | + | chr3_4:77796187-77796206 | Msa0524310:intron | 35.0% | |
| TAACGGAATACTTTGCTCAA+AGG | - | chr3_4:77796228-77796247 | None:intergenic | 35.0% | |
| ATTGTCTCAATAACCGGTAA+CGG | - | chr3_4:77796245-77796264 | None:intergenic | 35.0% | |
| TGTTGCATTGTCTCAATAAC+CGG | - | chr3_4:77796251-77796270 | None:intergenic | 35.0% | |
| GTTATTGAGACAATGCAACA+AGG | + | chr3_4:77796251-77796270 | Msa0524310:intron | 35.0% | |
| AAGGAGTTTACTGCGTTATT+AGG | - | chr3_4:77796324-77796343 | None:intergenic | 35.0% | |
| GTAAACTCCTTGTTGGATTT+AGG | + | chr3_4:77796333-77796352 | Msa0524310:intron | 35.0% | |
| AATAACTTCACTGAACTCTG+AGG | + | chr3_4:77796362-77796381 | Msa0524310:intron | 35.0% | |
| AATATGAAGTCAGTCAGGTA+AGG | - | chr3_4:77796521-77796540 | None:intergenic | 35.0% | |
| ATCTACTATGCATAATGGTG+CGG | + | chr3_4:77796549-77796568 | Msa0524310:intron | 35.0% | |
| ! | ATGCTTTATCTGTTGATTGG+TGG | + | chr3_4:77796782-77796801 | Msa0524310:intron | 35.0% |
| TAATACAACAACCAAGCTAC+AGG | - | chr3_4:77796952-77796971 | None:intergenic | 35.0% | |
| AAAAACCAAGCCAGTGATTT+AGG | - | chr3_4:77797111-77797130 | None:intergenic | 35.0% | |
| !!! | TCAGTTTCATTTTTGGCTCT+AGG | + | chr3_4:77797130-77797149 | Msa0524310:CDS | 35.0% |
| !!! | CAGTTTCATTTTTGGCTCTA+GGG | + | chr3_4:77797131-77797150 | Msa0524310:CDS | 35.0% |
| AACACAAACCTATTAACGCA+AGG | - | chr3_4:77797162-77797181 | None:intergenic | 35.0% | |
| ! | TTTTACTGTAAACTGTCCAC+GGG | + | chr3_4:77797181-77797200 | Msa0524310:intron | 35.0% |
| ! | TAATTTTTGTTCCACTCTGC+AGG | + | chr3_4:77797600-77797619 | Msa0524310:intron | 35.0% |
| !!! | TACAATGTTGTTTTCGGGTT+TGG | - | chr3_4:77797749-77797768 | None:intergenic | 35.0% |
| !! | TGCTGTTGCTTATGTTTTCA+TGG | + | chr3_4:77797774-77797793 | Msa0524310:intron | 35.0% |
| ATCCAATTACAGCATTCCAA+CGG | - | chr3_4:77797902-77797921 | None:intergenic | 35.0% | |
| AAACAAAACCGTCATATTCG+TGG | + | chr3_4:77797995-77798014 | Msa0524310:three_prime_UTR | 35.0% | |
| AGGACATATTGATACTTACG+AGG | + | chr3_4:77798122-77798141 | Msa0524310:three_prime_UTR | 35.0% | |
| ACGTTACATGGAAAGACTTT+AGG | - | chr3_4:77798182-77798201 | None:intergenic | 35.0% | |
| ATACAAAAACAGAGAGGCCA+CGG | - | chr3_4:77794621-77794640 | None:intergenic | 40.0% | |
| ! | ATGAGAAATGATGGGGAAGA+TGG | - | chr3_4:77794748-77794767 | None:intergenic | 40.0% |
| ATGGAGCATGAGAAATGATG+GGG | - | chr3_4:77794755-77794774 | None:intergenic | 40.0% | |
| CATGGAGCATGAGAAATGAT+GGG | - | chr3_4:77794756-77794775 | None:intergenic | 40.0% | |
| ATTTCTCATGCTCCATGGAA+TGG | + | chr3_4:77794759-77794778 | Msa0524310:CDS | 40.0% | |
| CCAACAAGGAAGAGAAAGAA+AGG | - | chr3_4:77794810-77794829 | None:intergenic | 40.0% | |
| CCTTTCTTTCTCTTCCTTGT+TGG | + | chr3_4:77794807-77794826 | Msa0524310:CDS | 40.0% | |
| AGCCAACACAATCTACTACT+TGG | + | chr3_4:77794865-77794884 | Msa0524310:intron | 40.0% | |
| GGATGCCAAGAATAAAGAGT+TGG | - | chr3_4:77794911-77794930 | None:intergenic | 40.0% | |
| ATTCTTGGCATCCTTCTTCA+AGG | + | chr3_4:77794918-77794937 | Msa0524310:intron | 40.0% | |
| GGCATCAATTCCTTCACATA+TGG | + | chr3_4:77794954-77794973 | Msa0524310:CDS | 40.0% | |
| AACGTCAAGACCATATGTGA+AGG | - | chr3_4:77794967-77794986 | None:intergenic | 40.0% | |
| AGAAACTCGGATGTTTGGAT+GGG | - | chr3_4:77795076-77795095 | None:intergenic | 40.0% | |
| AAGAAACTCGGATGTTTGGA+TGG | - | chr3_4:77795077-77795096 | None:intergenic | 40.0% | |
| TTGAATTGGAGGCAAAGAAG+AGG | - | chr3_4:77795298-77795317 | None:intergenic | 40.0% | |
| TCTTCTTTGCCTCCAATTCA+AGG | + | chr3_4:77795297-77795316 | Msa0524310:CDS | 40.0% | |
| TAAACATTGGCGCCTTGAAT+TGG | - | chr3_4:77795312-77795331 | None:intergenic | 40.0% | |
| GAAAACAAAAGTTGCAGCAC+AGG | - | chr3_4:77795382-77795401 | None:intergenic | 40.0% | |
| ! | AGCCTAAGATCTCCGTTTTA+AGG | + | chr3_4:77795436-77795455 | Msa0524310:intron | 40.0% |
| ! | GCCTAAGATCTCCGTTTTAA+GGG | + | chr3_4:77795437-77795456 | Msa0524310:intron | 40.0% |
| ACCCTTAAAACGGAGATCTT+AGG | - | chr3_4:77795441-77795460 | None:intergenic | 40.0% | |
| AATCATTCCAGCAGAATTGC+AGG | - | chr3_4:77795619-77795638 | None:intergenic | 40.0% | |
| ! | ACGGTGAACTATCTGAAACT+TGG | - | chr3_4:77795824-77795843 | None:intergenic | 40.0% |
| TTTCAGATAGTTCACCGTCA+TGG | + | chr3_4:77795826-77795845 | Msa0524310:CDS | 40.0% | |
| GGTTACCTTAAAATGCCTTC+TGG | - | chr3_4:77795870-77795889 | None:intergenic | 40.0% | |
| !! | AAGTGTTGAGAAACACAAGC+TGG | + | chr3_4:77795926-77795945 | Msa0524310:intron | 40.0% |
| ! | AGTGTTGAGAAACACAAGCT+GGG | + | chr3_4:77795927-77795946 | Msa0524310:intron | 40.0% |
| GGACAGCGTTATAAATGACA+AGG | + | chr3_4:77795976-77795995 | Msa0524310:intron | 40.0% | |
| ! | AATAGGCTGAAGTGTCATAG+AGG | + | chr3_4:77796032-77796051 | Msa0524310:intron | 40.0% |
| ! | ATAGGCTGAAGTGTCATAGA+GGG | + | chr3_4:77796033-77796052 | Msa0524310:intron | 40.0% |
| ! | TGAGCAAAGTATTCCGTTAC+CGG | + | chr3_4:77796229-77796248 | Msa0524310:intron | 40.0% |
| TAACGCAGTAAACTCCTTGT+TGG | + | chr3_4:77796326-77796345 | Msa0524310:intron | 40.0% | |
| GCTGCAGTTTCATGCATTAT+TGG | + | chr3_4:77796857-77796876 | Msa0524310:CDS | 40.0% | |
| ACATGATCTCACCTCTAAGT+TGG | - | chr3_4:77796906-77796925 | None:intergenic | 40.0% | |
| AATCTTGTATGCCTGTAGCT+TGG | + | chr3_4:77796938-77796957 | Msa0524310:intron | 40.0% | |
| CTTCCCTCTGTAACATAGTT+TGG | + | chr3_4:77797005-77797024 | Msa0524310:intron | 40.0% | |
| GTGCCAAACTATGTTACAGA+GGG | - | chr3_4:77797011-77797030 | None:intergenic | 40.0% | |
| AGTGCCAAACTATGTTACAG+AGG | - | chr3_4:77797012-77797031 | None:intergenic | 40.0% | |
| AAAGTAAAGGTCAGCTGAGT+CGG | - | chr3_4:77797059-77797078 | None:intergenic | 40.0% | |
| ACAATACTGTAGGACCACAA+AGG | + | chr3_4:77797082-77797101 | Msa0524310:intron | 40.0% | |
| CAATACTGTAGGACCACAAA+GGG | + | chr3_4:77797083-77797102 | Msa0524310:intron | 40.0% | |
| !!! | TTTCATTTTTGGCTCTAGGG+TGG | + | chr3_4:77797134-77797153 | Msa0524310:CDS | 40.0% |
| AGCTTCCGGTTTCACATTTA+TGG | + | chr3_4:77797415-77797434 | Msa0524310:CDS | 40.0% | |
| ACTCTGCAGGTAGATGTTTA+CGG | + | chr3_4:77797613-77797632 | Msa0524310:intron | 40.0% | |
| TTTCTTACTCGCAGATACAC+TGG | + | chr3_4:77797837-77797856 | Msa0524310:intron | 40.0% | |
| TCCAATTACAGCATTCCAAC+GGG | - | chr3_4:77797901-77797920 | None:intergenic | 40.0% | |
| GTACTCTCTCTTTCTTCCTC+TGG | + | chr3_4:77794641-77794660 | Msa0524310:intron | 45.0% | |
| !! | ATGATAGTAGCGTTGACCAG+AGG | - | chr3_4:77794660-77794679 | None:intergenic | 45.0% |
| CCATGGAGCATGAGAAATGA+TGG | - | chr3_4:77794757-77794776 | None:intergenic | 45.0% | |
| CCATCATTTCTCATGCTCCA+TGG | + | chr3_4:77794754-77794773 | Msa0524310:CDS | 45.0% | |
| AAGGCATGACGAAATCAGCA+AGG | - | chr3_4:77794791-77794810 | None:intergenic | 45.0% | |
| GTGCAAGAGAGATACCAACA+AGG | - | chr3_4:77794824-77794843 | None:intergenic | 45.0% | |
| ! | GCTTCTTTGGCGTTTTACAG+AGG | + | chr3_4:77794997-77795016 | Msa0524310:CDS | 45.0% |
| CAGGTGAATTGTTCAGTGAG+AGG | + | chr3_4:77795579-77795598 | Msa0524310:intron | 45.0% | |
| TGTTCAGTGAGAGGTGATCT+TGG | + | chr3_4:77795588-77795607 | Msa0524310:CDS | 45.0% | |
| TGCTAGACATATTGCACTCC+TGG | - | chr3_4:77795797-77795816 | None:intergenic | 45.0% | |
| GAGTGCAATATGTCTAGCAC+TGG | + | chr3_4:77795798-77795817 | Msa0524310:CDS | 45.0% | |
| AAACGCTGCATGAAGTAGAC+TGG | - | chr3_4:77795891-77795910 | None:intergenic | 45.0% | |
| GAGACAATGCAACAAGGTCA+TGG | + | chr3_4:77796257-77796276 | Msa0524310:intron | 45.0% | |
| GTTGAACCTTTCCCAACACA+GGG | - | chr3_4:77796390-77796409 | None:intergenic | 45.0% | |
| GCACATTCTTGCCAACTTAG+AGG | + | chr3_4:77796892-77796911 | Msa0524310:CDS | 45.0% | |
| GTAAACATCTACCTGCAGAG+TGG | - | chr3_4:77797614-77797633 | None:intergenic | 45.0% | |
| CTCTGCAGGTAGATGTTTAC+GGG | + | chr3_4:77797614-77797633 | Msa0524310:intron | 45.0% | |
| CAGACGTTTGACAAGTGTGT+TGG | + | chr3_4:77797639-77797658 | Msa0524310:CDS | 45.0% | |
| GTTTGACAAGTGTGTTGGAG+TGG | + | chr3_4:77797644-77797663 | Msa0524310:CDS | 45.0% | |
| ACAAGTGTGTTGGAGTGGAT+GGG | + | chr3_4:77797649-77797668 | Msa0524310:CDS | 45.0% | |
| TTGGCCGTGATTGCAATTCA+AGG | + | chr3_4:77797712-77797731 | Msa0524310:CDS | 45.0% | |
| ATAACTTGGTCTAGTCCCGT+TGG | + | chr3_4:77797883-77797902 | Msa0524310:exon | 45.0% | |
| TCCCGTTGGAATGCTGTAAT+TGG | + | chr3_4:77797897-77797916 | Msa0524310:three_prime_UTR | 45.0% | |
| GAGGAGAACCACGAATATGA+CGG | - | chr3_4:77798006-77798025 | None:intergenic | 45.0% | |
| AGACATCAACGGAGGCAACT+CGG | - | chr3_4:77794597-77794616 | None:intergenic | 50.0% | |
| GCAAGGTGAAGACCATTCCA+TGG | - | chr3_4:77794774-77794793 | None:intergenic | 50.0% | |
| CTTGGCATCCTTCTTCAAGG+TGG | + | chr3_4:77794921-77794940 | Msa0524310:intron | 50.0% | |
| GGATGTTTGGATGGGAGAGT+CGG | - | chr3_4:77795068-77795087 | None:intergenic | 50.0% | |
| ! | GATGCATCGAAGTGCCAATC+TGG | - | chr3_4:77795267-77795286 | None:intergenic | 50.0% |
| ACATTGGCGCCTTGAATTGG+AGG | - | chr3_4:77795309-77795328 | None:intergenic | 50.0% | |
| GGGAGTGAAGCCTATTCTCA+CGG | - | chr3_4:77795337-77795356 | None:intergenic | 50.0% | |
| ATTCCAGCAGAATTGCAGGC+AGG | - | chr3_4:77795615-77795634 | None:intergenic | 50.0% | |
| ! | AAAGGAGCGTGACACCATGA+CGG | - | chr3_4:77795843-77795862 | None:intergenic | 50.0% |
| ! | CACGCTCCTTTTGATCCAGA+AGG | + | chr3_4:77795852-77795871 | Msa0524310:CDS | 50.0% |
| GATTGAGGGAGAGTCCAAAG+AGG | + | chr3_4:77795998-77796017 | Msa0524310:intron | 50.0% | |
| GGTTGAACCTTTCCCAACAC+AGG | - | chr3_4:77796391-77796410 | None:intergenic | 50.0% | |
| CACTGCGTCCTTTGATTGTG+TGG | + | chr3_4:77797028-77797047 | Msa0524310:intron | 50.0% | |
| CGGCTGTACCACACAATCAA+AGG | - | chr3_4:77797039-77797058 | None:intergenic | 50.0% | |
| AGTGATTTAGGCGCCCTTTG+TGG | - | chr3_4:77797099-77797118 | None:intergenic | 50.0% | |
| !! | ACAAAGGGCGCCTAAATCAC+TGG | + | chr3_4:77797098-77797117 | Msa0524310:CDS | 50.0% |
| GGGTGGTTCCTTGCGTTAAT+AGG | + | chr3_4:77797151-77797170 | Msa0524310:CDS | 50.0% | |
| GACAAGTGTGTTGGAGTGGA+TGG | + | chr3_4:77797648-77797667 | Msa0524310:CDS | 50.0% | |
| ACATCAACGGAGGCAACTCG+GGG | - | chr3_4:77794595-77794614 | None:intergenic | 55.0% | |
| GACATCAACGGAGGCAACTC+GGG | - | chr3_4:77794596-77794615 | None:intergenic | 55.0% | |
| GAGGCCACGGAAGACATCAA+CGG | - | chr3_4:77794608-77794627 | None:intergenic | 55.0% | |
| GTTTGGATGGGAGAGTCGGA+AGG | - | chr3_4:77795064-77795083 | None:intergenic | 55.0% | |
| !! | AACTCTGAGGTGCCCTGTGT+TGG | + | chr3_4:77796375-77796394 | Msa0524310:intron | 55.0% |
| !! | ACTCTGAGGTGCCCTGTGTT+GGG | + | chr3_4:77796376-77796395 | Msa0524310:intron | 55.0% |
| CGGACTGATGAATACACCCG+TGG | - | chr3_4:77797200-77797219 | None:intergenic | 55.0% | |
| CGGGTGTATTCATCAGTCCG+TGG | + | chr3_4:77797200-77797219 | Msa0524310:intron | 55.0% | |
| !! | CTGCTTAGCTCTGCAGCTTC+CGG | + | chr3_4:77797401-77797420 | Msa0524310:CDS | 55.0% |
| TTCAGCAGCAGCAACGCTCG+TGG | - | chr3_4:77794547-77794566 | None:intergenic | 60.0% | |
| CATCAACGGAGGCAACTCGG+GGG | - | chr3_4:77794594-77794613 | None:intergenic | 60.0% | |
| GCCTCCGTTGATGTCTTCCG+TGG | + | chr3_4:77794601-77794620 | Msa0524310:CDS | 60.0% | |
| GCCACGGAAGACATCAACGG+AGG | - | chr3_4:77794605-77794624 | None:intergenic | 60.0% | |
| GGACCTGCCTGCAATTCTGC+TGG | + | chr3_4:77795609-77795628 | Msa0524310:CDS | 60.0% | |
| ! | GAGGTGCCCTGTGTTGGGAA+AGG | + | chr3_4:77796381-77796400 | Msa0524310:intron | 60.0% |
| ! | GGGCGCCTAAATCACTGGCT+TGG | + | chr3_4:77797103-77797122 | Msa0524310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77794433 | 77798202 | 77794433 | ID=Msa0524310;Name=Msa0524310 |
| chr3_4 | mRNA | 77794433 | 77798202 | 77794433 | ID=Msa0524310-mRNA-1;Parent=Msa0524310;Name=Msa0524310-mRNA-1;_AED=0.25;_eAED=0.25;_QI=102|0.9|0.81|1|0.8|0.63|11|316|380 |
| chr3_4 | exon | 77794433 | 77794636 | 77794433 | ID=Msa0524310-mRNA-1:exon:22870;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77794717 | 77794828 | 77794717 | ID=Msa0524310-mRNA-1:exon:22871;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77794940 | 77795117 | 77794940 | ID=Msa0524310-mRNA-1:exon:22872;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77795206 | 77795335 | 77795206 | ID=Msa0524310-mRNA-1:exon:22873;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77795582 | 77795698 | 77795582 | ID=Msa0524310-mRNA-1:exon:22874;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77795798 | 77795883 | 77795798 | ID=Msa0524310-mRNA-1:exon:22875;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77796847 | 77796913 | 77796847 | ID=Msa0524310-mRNA-1:exon:22876;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77797094 | 77797172 | 77797094 | ID=Msa0524310-mRNA-1:exon:22877;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77797360 | 77797451 | 77797360 | ID=Msa0524310-mRNA-1:exon:22878;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77797622 | 77797765 | 77797622 | ID=Msa0524310-mRNA-1:exon:22879;Parent=Msa0524310-mRNA-1 |
| chr3_4 | exon | 77797851 | 77798202 | 77797851 | ID=Msa0524310-mRNA-1:exon:22880;Parent=Msa0524310-mRNA-1 |
| chr3_4 | five_prime_UTR | 77794433 | 77794534 | 77794433 | ID=Msa0524310-mRNA-1:five_prime_utr;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77794535 | 77794636 | 77794535 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77794717 | 77794828 | 77794717 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77794940 | 77795117 | 77794940 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77795206 | 77795335 | 77795206 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77795582 | 77795698 | 77795582 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77795798 | 77795883 | 77795798 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77796847 | 77796913 | 77796847 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77797094 | 77797172 | 77797094 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77797360 | 77797451 | 77797360 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77797622 | 77797765 | 77797622 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | CDS | 77797851 | 77797886 | 77797851 | ID=Msa0524310-mRNA-1:cds;Parent=Msa0524310-mRNA-1 |
| chr3_4 | three_prime_UTR | 77797887 | 77798202 | 77797887 | ID=Msa0524310-mRNA-1:three_prime_utr;Parent=Msa0524310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
