Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524420 | RHN71384.1 | 87.112 | 419 | 13 | 3 | 1 | 381 | 1 | 416 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524420 | sp|Q68CP4|HGNAT_HUMAN | 29.477 | 363 | 165 | 12 | 21 | 327 | 266 | 593 | 4.68e-27 | 116 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524420 | A0A396J3S6 | 87.112 | 419 | 13 | 3 | 1 | 381 | 1 | 416 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0422650 | Msa0524420 | 0.812092 | 5.045863e-51 | -8.615850e-47 |
| Msa0422740 | Msa0524420 | 0.800639 | 1.311280e-48 | -8.615850e-47 |
| Msa0422960 | Msa0524420 | 0.807688 | 4.472166e-50 | -8.615850e-47 |
| Msa0514750 | Msa0524420 | 0.804002 | 2.662202e-49 | -8.615850e-47 |
| Msa0524310 | Msa0524420 | 0.942081 | 1.348892e-101 | -8.615850e-47 |
| Msa0524420 | Msa1424600 | 0.925709 | 1.270553e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524420 | MtrunA17_Chr3g0145661 | 87.112 | 419 | 13 | 3 | 1 | 381 | 1 | 416 | 0.0 | 716 |
| Msa0524420 | MtrunA17_Chr7g0214801 | 42.748 | 393 | 180 | 4 | 22 | 374 | 66 | 453 | 4.84e-113 | 337 |
| Msa0524420 | MtrunA17_Chr1g0195051 | 43.750 | 400 | 181 | 4 | 22 | 380 | 44 | 440 | 1.24e-110 | 332 |
| Msa0524420 | MtrunA17_Chr7g0272261 | 40.394 | 406 | 193 | 5 | 14 | 374 | 22 | 423 | 6.90e-101 | 306 |
| Msa0524420 | MtrunA17_Chr1g0180411 | 38.670 | 406 | 198 | 6 | 13 | 374 | 55 | 453 | 2.58e-95 | 293 |
| Msa0524420 | MtrunA17_Chr7g0264851 | 34.353 | 425 | 189 | 9 | 17 | 374 | 57 | 458 | 9.59e-72 | 232 |
| Msa0524420 | MtrunA17_Chr7g0264821 | 41.909 | 241 | 123 | 5 | 141 | 374 | 5 | 235 | 1.18e-60 | 197 |
| Msa0524420 | MtrunA17_Chr7g0264831 | 35.606 | 132 | 43 | 2 | 3 | 98 | 48 | 173 | 3.36e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524420 | AT5G47900.9 | 45.694 | 418 | 176 | 5 | 2 | 374 | 25 | 436 | 9.64e-119 | 352 |
| Msa0524420 | AT5G47900.1 | 45.694 | 418 | 176 | 5 | 2 | 374 | 25 | 436 | 9.64e-119 | 352 |
| Msa0524420 | AT5G47900.10 | 46.736 | 383 | 153 | 5 | 37 | 374 | 1 | 377 | 2.14e-111 | 331 |
| Msa0524420 | AT5G47900.6 | 49.515 | 309 | 141 | 4 | 75 | 374 | 34 | 336 | 4.09e-99 | 298 |
| Msa0524420 | AT5G27730.1 | 40.955 | 398 | 187 | 5 | 21 | 374 | 35 | 428 | 2.12e-97 | 298 |
| Msa0524420 | AT5G47900.8 | 44.414 | 367 | 153 | 5 | 2 | 323 | 25 | 385 | 1.14e-96 | 294 |
| Msa0524420 | AT5G47900.4 | 39.578 | 427 | 190 | 8 | 2 | 374 | 19 | 431 | 4.15e-96 | 293 |
| Msa0524420 | AT5G47900.7 | 40.594 | 404 | 152 | 6 | 2 | 323 | 25 | 422 | 1.95e-89 | 276 |
| Msa0524420 | AT5G27730.3 | 43.516 | 347 | 148 | 5 | 21 | 323 | 35 | 377 | 1.89e-87 | 270 |
| Msa0524420 | AT5G47900.11 | 50.000 | 256 | 115 | 3 | 126 | 374 | 3 | 252 | 5.84e-82 | 251 |
| Msa0524420 | AT5G27730.4 | 43.960 | 298 | 120 | 4 | 21 | 275 | 35 | 328 | 1.19e-80 | 251 |
| Msa0524420 | AT5G47900.2 | 42.718 | 309 | 126 | 5 | 2 | 265 | 25 | 327 | 1.92e-78 | 246 |
| Msa0524420 | AT5G27730.2 | 41.083 | 314 | 173 | 4 | 69 | 374 | 38 | 347 | 2.50e-76 | 241 |
| Msa0524420 | AT5G27730.5 | 44.487 | 263 | 134 | 4 | 69 | 323 | 38 | 296 | 3.03e-66 | 213 |
| Msa0524420 | AT5G47900.3 | 41.897 | 253 | 101 | 4 | 2 | 214 | 25 | 271 | 8.50e-58 | 190 |
| Msa0524420 | AT5G47900.5 | 41.406 | 256 | 101 | 4 | 2 | 214 | 25 | 274 | 2.91e-57 | 189 |
Find 102 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCCGGTTTCACATTTA+TGG | 0.131675 | 3_4:+77886167 | Msa0524420:CDS |
| GACTTATTGAATTGTATTAT+TGG | 0.160430 | 3_4:+77886797 | Msa0524420:three_prime_UTR |
| TGCATTATTGGACTTCAATA+TGG | 0.179392 | 3_4:+77885621 | Msa0524420:CDS |
| GCTGCAGTTTCATGCATTAT+TGG | 0.191483 | 3_4:+77885609 | Msa0524420:CDS |
| CTTATGATATTTGTCGATTA+TGG | 0.223955 | 3_4:+77883465 | Msa0524420:CDS |
| TCCCGTTGGAATGCTGTAAT+TGG | 0.226963 | 3_4:+77886649 | Msa0524420:three_prime_UTR |
| CCTTTCTTTCTCTTCCTTGT+TGG | 0.247561 | 3_4:+77883555 | Msa0524420:CDS |
| CTGCTTAGCTCTGCAGCTTC+CGG | 0.284725 | 3_4:+77886153 | Msa0524420:CDS |
| GTTCAAACTATACGCTTCTT+TGG | 0.296079 | 3_4:+77883738 | Msa0524420:CDS |
| ACGTTACATGGAAAGACTTT+AGG | 0.299486 | 3_4:-77886931 | None:intergenic |
| GGGTGGTTCCTTGCGTTAAT+AGG | 0.300918 | 3_4:+77885903 | Msa0524420:CDS |
| ATGATTGATCGCTATATTCT+TGG | 0.323341 | 3_4:+77884385 | Msa0524420:CDS |
| GGTTACCTTAAAATGCCTTC+TGG | 0.328597 | 3_4:-77884619 | None:intergenic |
| AATACAATTCAATAAGTCTT+AGG | 0.333014 | 3_4:-77886792 | None:intergenic |
| TTTGAAGAAACTCGGATGTT+TGG | 0.338485 | 3_4:-77883832 | None:intergenic |
| ATTTATGGCTTTATATATTC+TGG | 0.342580 | 3_4:+77886182 | Msa0524420:CDS |
| GTGTACAGAGATTTATTTAG+AGG | 0.350332 | 3_4:-77886117 | None:intergenic |
| GCACATTCTTGCCAACTTAG+AGG | 0.363831 | 3_4:+77885644 | Msa0524420:CDS |
| TAAACATTGGCGCCTTGAAT+TGG | 0.371732 | 3_4:-77884064 | None:intergenic |
| TCTTCTTTGCCTCCAATTCA+AGG | 0.372683 | 3_4:+77884052 | Msa0524420:CDS |
| ACTCTGCAGGTAGATGTTTA+CGG | 0.374686 | 3_4:+77886365 | Msa0524420:intron |
| ACCTTAAGATTTCTGAAAAC+AGG | 0.377103 | 3_4:-77884430 | None:intergenic |
| AATCATTCCAGCAGAATTGC+AGG | 0.385868 | 3_4:-77884368 | None:intergenic |
| CTCTGCAGGTAGATGTTTAC+GGG | 0.398068 | 3_4:+77886366 | Msa0524420:intron |
| GCATTATTGGACTTCAATAT+GGG | 0.409722 | 3_4:+77885622 | Msa0524420:CDS |
| TGTTCAGTGAGAGGTGATCT+TGG | 0.410959 | 3_4:+77884340 | Msa0524420:CDS |
| GATGCATCGAAGTGCCAATC+TGG | 0.416971 | 3_4:-77884019 | None:intergenic |
| GGAGTATAATATACGTAAGT+AGG | 0.425257 | 3_4:+77883183 | Msa0524420:five_prime_UTR |
| GACATCAACGGAGGCAACTC+GGG | 0.437406 | 3_4:-77883319 | None:intergenic |
| ATTTACTCCGGATTGTTGTA+TGG | 0.438927 | 3_4:+77883986 | Msa0524420:CDS |
| TCCAATTACAGCATTCCAAC+GGG | 0.448756 | 3_4:-77886650 | None:intergenic |
| GACAAGTGTGTTGGAGTGGA+TGG | 0.450359 | 3_4:+77886400 | Msa0524420:CDS |
| CCATGGAGCATGAGAAATGA+TGG | 0.451821 | 3_4:-77883502 | None:intergenic |
| TGTTCTTGTATCTTCAAACT+TGG | 0.454466 | 3_4:+77886445 | Msa0524420:CDS |
| TAAAGCCATAAATGTGAAAC+CGG | 0.454471 | 3_4:-77886172 | None:intergenic |
| GGACCTGCCTGCAATTCTGC+TGG | 0.460227 | 3_4:+77884361 | Msa0524420:CDS |
| GTTAAAGAAAGAAGATGAGA+GGG | 0.460535 | 3_4:+77883161 | Msa0524420:five_prime_UTR |
| CAATATGTCCTATTCTAATA+CGG | 0.463441 | 3_4:-77886862 | None:intergenic |
| ATTCAAAATTAGACGTTACA+TGG | 0.464007 | 3_4:-77886943 | None:intergenic |
| AAAATGCCTTCTGGATCAAA+AGG | 0.469212 | 3_4:-77884610 | None:intergenic |
| GGCATCAATTCCTTCACATA+TGG | 0.470691 | 3_4:+77883708 | Msa0524420:CDS |
| GTTTCTAGCAGCAATATTGT+TGG | 0.471022 | 3_4:+77883961 | Msa0524420:CDS |
| TCAAAACTTATTACTCCCAT+TGG | 0.476105 | 3_4:+77883850 | Msa0524420:CDS |
| TTGGCCGTGATTGCAATTCA+AGG | 0.479960 | 3_4:+77886464 | Msa0524420:CDS |
| ACATTGGCGCCTTGAATTGG+AGG | 0.491113 | 3_4:-77884061 | None:intergenic |
| AGACATCAACGGAGGCAACT+CGG | 0.491228 | 3_4:-77883320 | None:intergenic |
| AAGAAACTCGGATGTTTGGA+TGG | 0.491252 | 3_4:-77883828 | None:intergenic |
| ATGAGAAATGATGGGGAAGA+TGG | 0.492402 | 3_4:-77883493 | None:intergenic |
| TTAGGAGTAGATAAGTTATG+AGG | 0.493354 | 3_4:-77886774 | None:intergenic |
| ATGGTCTATATGTTCCAGAT+TGG | 0.496797 | 3_4:+77884005 | Msa0524420:CDS |
| ATCTATCTGTCAAAGAAGAA+TGG | 0.497946 | 3_4:+77883239 | Msa0524420:exon |
| CCATCATTTCTCATGCTCCA+TGG | 0.501869 | 3_4:+77883502 | Msa0524420:CDS |
| AGTGATTTAGGCGCCCTTTG+TGG | 0.507807 | 3_4:-77885848 | None:intergenic |
| AAACAAAACCGTCATATTCG+TGG | 0.509244 | 3_4:+77886747 | Msa0524420:three_prime_UTR |
| CCAACAAGGAAGAGAAAGAA+AGG | 0.513124 | 3_4:-77883555 | None:intergenic |
| ATTTCTCATGCTCCATGGAA+TGG | 0.517246 | 3_4:+77883507 | Msa0524420:CDS |
| AGATTTCAACACAAATAACT+TGG | 0.518079 | 3_4:+77886621 | Msa0524420:exon |
| ACATGATCTCACCTCTAAGT+TGG | 0.518261 | 3_4:-77885655 | None:intergenic |
| ACAAAGGGCGCCTAAATCAC+TGG | 0.519041 | 3_4:+77885850 | Msa0524420:CDS |
| CAATACTGTAGGACCACAAA+GGG | 0.522623 | 3_4:+77885835 | Msa0524420:intron |
| TTTCTTACTCGCAGATACAC+TGG | 0.523759 | 3_4:+77886589 | Msa0524420:intron |
| GGGCGCCTAAATCACTGGCT+TGG | 0.529127 | 3_4:+77885855 | Msa0524420:CDS |
| ACGGTGAACTATCTGAAACT+TGG | 0.530146 | 3_4:-77884573 | None:intergenic |
| ATGATATTTGTCGATTATGG+TGG | 0.535720 | 3_4:+77883468 | Msa0524420:CDS |
| AGTTAAAGAAAGAAGATGAG+AGG | 0.540378 | 3_4:+77883160 | Msa0524420:five_prime_UTR |
| ATATTGTTGGCAATTTACTC+CGG | 0.555052 | 3_4:+77883974 | Msa0524420:CDS |
| CAGACGTTTGACAAGTGTGT+TGG | 0.557488 | 3_4:+77886391 | Msa0524420:CDS |
| ACAAGTGTGTTGGAGTGGAT+GGG | 0.559908 | 3_4:+77886401 | Msa0524420:CDS |
| AAATCCTTGAATTGCAATCA+CGG | 0.562969 | 3_4:-77886468 | None:intergenic |
| GAGTGCAATATGTCTAGCAC+TGG | 0.569204 | 3_4:+77884550 | Msa0524420:CDS |
| CATGGAGCATGAGAAATGAT+GGG | 0.571546 | 3_4:-77883501 | None:intergenic |
| TTTCAGATAGTTCACCGTCA+TGG | 0.572351 | 3_4:+77884578 | Msa0524420:CDS |
| GCAAGGTGAAGACCATTCCA+TGG | 0.582375 | 3_4:-77883519 | None:intergenic |
| AGAAACTCGGATGTTTGGAT+GGG | 0.586314 | 3_4:-77883827 | None:intergenic |
| ATAACTTGGTCTAGTCCCGT+TGG | 0.587653 | 3_4:+77886635 | Msa0524420:exon |
| ATCCAATTACAGCATTCCAA+CGG | 0.588026 | 3_4:-77886651 | None:intergenic |
| GCCTCCGTTGATGTCTTCCG+TGG | 0.591050 | 3_4:+77883327 | Msa0524420:CDS |
| GGATGTTTGGATGGGAGAGT+CGG | 0.594308 | 3_4:-77883819 | None:intergenic |
| TATTCTCACGGTGTAAACAT+TGG | 0.594566 | 3_4:-77884077 | None:intergenic |
| ATATAGACCATACAACAATC+CGG | 0.597198 | 3_4:-77883993 | None:intergenic |
| AACACAAACCTATTAACGCA+AGG | 0.613812 | 3_4:-77885911 | None:intergenic |
| TTCAGCAGCAGCAACGCTCG+TGG | 0.615336 | 3_4:-77883267 | None:intergenic |
| CAGGTGAATTGTTCAGTGAG+AGG | 0.616782 | 3_4:+77884331 | Msa0524420:intron |
| AACGTCAAGACCATATGTGA+AGG | 0.617892 | 3_4:-77883718 | None:intergenic |
| TAATATACGTAAGTAGGTAG+CGG | 0.618417 | 3_4:+77883189 | Msa0524420:five_prime_UTR |
| GAGGAGAACCACGAATATGA+CGG | 0.625274 | 3_4:-77886755 | None:intergenic |
| ATTCCAGCAGAATTGCAGGC+AGG | 0.625616 | 3_4:-77884364 | None:intergenic |
| GTTTGGATGGGAGAGTCGGA+AGG | 0.629743 | 3_4:-77883815 | None:intergenic |
| TTAAAGAAAGAAGATGAGAG+GGG | 0.630173 | 3_4:+77883162 | Msa0524420:five_prime_UTR |
| ACATCAACGGAGGCAACTCG+GGG | 0.631918 | 3_4:-77883318 | None:intergenic |
| GTTTGACAAGTGTGTTGGAG+TGG | 0.639516 | 3_4:+77886396 | Msa0524420:CDS |
| ACAATACTGTAGGACCACAA+AGG | 0.644164 | 3_4:+77885834 | Msa0524420:intron |
| TTGAATTGGAGGCAAAGAAG+AGG | 0.646002 | 3_4:-77884050 | None:intergenic |
| TCTAAATAAATCTCTGTACA+CGG | 0.654333 | 3_4:+77886119 | Msa0524420:CDS |
| GAGGCCACGGAAGACATCAA+CGG | 0.666744 | 3_4:-77883331 | None:intergenic |
| ATGGAGCATGAGAAATGATG+GGG | 0.677643 | 3_4:-77883500 | None:intergenic |
| AAAGGAGCGTGACACCATGA+CGG | 0.685895 | 3_4:-77884592 | None:intergenic |
| AAGGCATGACGAAATCAGCA+AGG | 0.697375 | 3_4:-77883536 | None:intergenic |
| GCCACGGAAGACATCAACGG+AGG | 0.698738 | 3_4:-77883328 | None:intergenic |
| AGGACATATTGATACTTACG+AGG | 0.716429 | 3_4:+77886874 | Msa0524420:three_prime_UTR |
| GTGCAAGAGAGATACCAACA+AGG | 0.751478 | 3_4:-77883569 | None:intergenic |
| CATCAACGGAGGCAACTCGG+GGG | 0.763652 | 3_4:-77883317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGATAATACTAATAAAA+TGG | - | chr3_4:77885373-77885392 | None:intergenic | 10.0% |
| !!! | TAATTTAGTTTTTAACTTAA+TGG | + | chr3_4:77885722-77885741 | Msa0524420:intron | 10.0% |
| !! | AACAAAAATTATATATAACA+TGG | - | chr3_4:77886343-77886362 | None:intergenic | 10.0% |
| !!! | TTTCTTTTAAACATAATAAC+AGG | + | chr3_4:77884312-77884331 | Msa0524420:intron | 15.0% |
| !!! | GTTATAAAATTTTGTAATCA+AGG | - | chr3_4:77884524-77884543 | None:intergenic | 15.0% |
| !!! | TATCTATTGTAATTTGTAAA+AGG | + | chr3_4:77885385-77885404 | Msa0524420:intron | 15.0% |
| !! | TATATATAACATGGTTAAAT+AGG | - | chr3_4:77886334-77886353 | None:intergenic | 15.0% |
| !! | AATATAGTTAATTGTTTGTT+GGG | - | chr3_4:77886556-77886575 | None:intergenic | 15.0% |
| !! | AAACAATTAACTATATTGTT+TGG | + | chr3_4:77886559-77886578 | Msa0524420:intron | 15.0% |
| !!! | TAATAAGTTTTGAAGAAACT+CGG | - | chr3_4:77883843-77883862 | None:intergenic | 20.0% |
| !! | AATCATAAACAAAAATCACA+AGG | - | chr3_4:77884290-77884309 | None:intergenic | 20.0% |
| !!! | TACAAAATTTTATAACTTCC+AGG | + | chr3_4:77884528-77884547 | Msa0524420:intron | 20.0% |
| !! | CAATTCACTATTTACTAATA+TGG | + | chr3_4:77884875-77884894 | Msa0524420:intron | 20.0% |
| !! | GTTTAAAAGAAAAATCAATC+AGG | - | chr3_4:77885052-77885071 | None:intergenic | 20.0% |
| !! | AGTAAGTTAATTAAGTATGA+TGG | - | chr3_4:77885164-77885183 | None:intergenic | 20.0% |
| !!! | AGAATAAAAAAAGTGTAAAG+GGG | - | chr3_4:77885461-77885480 | None:intergenic | 20.0% |
| !!! | GAGAATAAAAAAAGTGTAAA+GGG | - | chr3_4:77885462-77885481 | None:intergenic | 20.0% |
| !!! | AGAGAATAAAAAAAGTGTAA+AGG | - | chr3_4:77885463-77885482 | None:intergenic | 20.0% |
| !! | TTAAACCGAAAATTATATGA+TGG | + | chr3_4:77885507-77885526 | Msa0524420:intron | 20.0% |
| !!! | TACAACCATCATATAATTTT+CGG | - | chr3_4:77885515-77885534 | None:intergenic | 20.0% |
| !!! | ATTTATGGCTTTATATATTC+TGG | + | chr3_4:77886182-77886201 | Msa0524420:CDS | 20.0% |
| !!! | AAATCTTACAATGTTGTTTT+CGG | - | chr3_4:77886507-77886526 | None:intergenic | 20.0% |
| !! | CAATATAGTTAATTGTTTGT+TGG | - | chr3_4:77886557-77886576 | None:intergenic | 20.0% |
| !! | AATACAATTCAATAAGTCTT+AGG | - | chr3_4:77886795-77886814 | None:intergenic | 20.0% |
| !! | GACTTATTGAATTGTATTAT+TGG | + | chr3_4:77886797-77886816 | Msa0524420:three_prime_UTR | 20.0% |
| !! | AAAAAAAATGGAAAGACTTT+AGG | - | chr3_4:77886901-77886920 | None:intergenic | 20.0% |
| !! | CTTATGATATTTGTCGATTA+TGG | + | chr3_4:77883465-77883484 | Msa0524420:CDS | 25.0% |
| ! | TAACTAACTAACTAACCAAT+GGG | - | chr3_4:77883868-77883887 | None:intergenic | 25.0% |
| ! | GAAATTCAAAACCCTTAAAA+CGG | - | chr3_4:77884206-77884225 | None:intergenic | 25.0% |
| !! | AAACAGGCTTTTTGTATAAA+TGG | - | chr3_4:77884417-77884436 | None:intergenic | 25.0% |
| ! | AAGAAATGGGATCATTTATA+AGG | - | chr3_4:77884457-77884476 | None:intergenic | 25.0% |
| ! | AAACCATTGAACAAAGAAAT+GGG | - | chr3_4:77884470-77884489 | None:intergenic | 25.0% |
| ! | TAAACCATTGAACAAAGAAA+TGG | - | chr3_4:77884471-77884490 | None:intergenic | 25.0% |
| ! | TTATAAATGACAAGGATTGA+GGG | + | chr3_4:77884736-77884755 | Msa0524420:intron | 25.0% |
| !!! | TTTTCTACTTTTGAAAAGAC+TGG | + | chr3_4:77885229-77885248 | Msa0524420:intron | 25.0% |
| !!! | TTTCTACTTTTGAAAAGACT+GGG | + | chr3_4:77885230-77885249 | Msa0524420:intron | 25.0% |
| ! | TTGTTATCTACTATGCATAA+TGG | + | chr3_4:77885296-77885315 | Msa0524420:intron | 25.0% |
| !! | GAATAAAAAAAGTGTAAAGG+GGG | - | chr3_4:77885460-77885479 | None:intergenic | 25.0% |
| ! | ACAGTATTGTAGAAAAGTAA+AGG | - | chr3_4:77885824-77885843 | None:intergenic | 25.0% |
| !!! | TTACTTTTCTACAATACTGT+AGG | + | chr3_4:77885824-77885843 | Msa0524420:intron | 25.0% |
| !!! | TGGTTTTTCAGTTTCATTTT+TGG | + | chr3_4:77885875-77885894 | Msa0524420:CDS | 25.0% |
| !!! | ATCAGTTGGTAACTTATATT+AGG | - | chr3_4:77885982-77886001 | None:intergenic | 25.0% |
| ! | ATACTTGAATCATTATCAGT+TGG | - | chr3_4:77885996-77886015 | None:intergenic | 25.0% |
| !! | GTATTTTCTCTTCATTATCA+TGG | + | chr3_4:77886012-77886031 | Msa0524420:intron | 25.0% |
| !!! | TTTTTTTGCTTTTTGTTTCC+AGG | + | chr3_4:77886090-77886109 | Msa0524420:intron | 25.0% |
| ! | TCTAAATAAATCTCTGTACA+CGG | + | chr3_4:77886119-77886138 | Msa0524420:CDS | 25.0% |
| ! | TGTGACAATAGAAAATTATC+TGG | + | chr3_4:77886219-77886238 | Msa0524420:intron | 25.0% |
| ! | ATCAAAAGATGCAAAGTATA+AGG | - | chr3_4:77886261-77886280 | None:intergenic | 25.0% |
| !!! | AATCTTACAATGTTGTTTTC+GGG | - | chr3_4:77886506-77886525 | None:intergenic | 25.0% |
| ! | AGATTTCAACACAAATAACT+TGG | + | chr3_4:77886621-77886640 | Msa0524420:exon | 25.0% |
| !! | TTTTCAATCCGTATTAGAAT+AGG | + | chr3_4:77886854-77886873 | Msa0524420:three_prime_UTR | 25.0% |
| ! | CAATATGTCCTATTCTAATA+CGG | - | chr3_4:77886865-77886884 | None:intergenic | 25.0% |
| ! | GGTTCTCTCAAAAAAAAAAA+TGG | - | chr3_4:77886913-77886932 | None:intergenic | 25.0% |
| AGTTAAAGAAAGAAGATGAG+AGG | + | chr3_4:77883160-77883179 | Msa0524420:five_prime_UTR | 30.0% | |
| GTTAAAGAAAGAAGATGAGA+GGG | + | chr3_4:77883161-77883180 | Msa0524420:five_prime_UTR | 30.0% | |
| TTAAAGAAAGAAGATGAGAG+GGG | + | chr3_4:77883162-77883181 | Msa0524420:five_prime_UTR | 30.0% | |
| GGAGTATAATATACGTAAGT+AGG | + | chr3_4:77883183-77883202 | Msa0524420:five_prime_UTR | 30.0% | |
| TAATATACGTAAGTAGGTAG+CGG | + | chr3_4:77883189-77883208 | Msa0524420:five_prime_UTR | 30.0% | |
| ATCTATCTGTCAAAGAAGAA+TGG | + | chr3_4:77883239-77883258 | Msa0524420:exon | 30.0% | |
| AGTTACATACAAAAACAGAG+AGG | - | chr3_4:77883353-77883372 | None:intergenic | 30.0% | |
| ! | ATGATATTTGTCGATTATGG+TGG | + | chr3_4:77883468-77883487 | Msa0524420:CDS | 30.0% |
| AGTTGGAATGATCTAAGTAA+TGG | - | chr3_4:77883648-77883667 | None:intergenic | 30.0% | |
| TCATTCCAACTCTTTATTCT+TGG | + | chr3_4:77883657-77883676 | Msa0524420:intron | 30.0% | |
| ! | GTTTTACAGAGGATTTCTAT+TGG | + | chr3_4:77883762-77883781 | Msa0524420:CDS | 30.0% |
| TCAAAACTTATTACTCCCAT+TGG | + | chr3_4:77883850-77883869 | Msa0524420:CDS | 30.0% | |
| CTAACTAACTAACTAACCAA+TGG | - | chr3_4:77883869-77883888 | None:intergenic | 30.0% | |
| ATATTGTTGGCAATTTACTC+CGG | + | chr3_4:77883974-77883993 | Msa0524420:CDS | 30.0% | |
| ATATAGACCATACAACAATC+CGG | - | chr3_4:77883996-77884015 | None:intergenic | 30.0% | |
| ACAGAATAAATAGCTAAGTG+GGG | - | chr3_4:77884114-77884133 | None:intergenic | 30.0% | |
| GACAGAATAAATAGCTAAGT+GGG | - | chr3_4:77884115-77884134 | None:intergenic | 30.0% | |
| ! | AAATCACAAGGTCAACATTT+TGG | - | chr3_4:77884278-77884297 | None:intergenic | 30.0% |
| ATGATTGATCGCTATATTCT+TGG | + | chr3_4:77884385-77884404 | Msa0524420:CDS | 30.0% | |
| ! | ACCTTAAGATTTCTGAAAAC+AGG | - | chr3_4:77884433-77884452 | None:intergenic | 30.0% |
| TTCTCAACACTTAACAAGAT+TGG | - | chr3_4:77884670-77884689 | None:intergenic | 30.0% | |
| GTTATAAATGACAAGGATTG+AGG | + | chr3_4:77884735-77884754 | Msa0524420:intron | 30.0% | |
| TAGTGAATTGAGTGATGAAA+AGG | - | chr3_4:77884865-77884884 | None:intergenic | 30.0% | |
| TATTAAGCCTAAATCCAACA+AGG | - | chr3_4:77885095-77885114 | None:intergenic | 30.0% | |
| AAACAAATATGAAGTCAGTC+AGG | - | chr3_4:77885278-77885297 | None:intergenic | 30.0% | |
| TCATAGAAGAAATGAATGCA+AGG | - | chr3_4:77885339-77885358 | None:intergenic | 30.0% | |
| AAAATCTGCAACTTATTCAG+TGG | - | chr3_4:77885419-77885438 | None:intergenic | 30.0% | |
| ! | CTGAATAAGTTGCAGATTTT+TGG | + | chr3_4:77885419-77885438 | Msa0524420:intron | 30.0% |
| !! | AATAAGTTGCAGATTTTTGG+TGG | + | chr3_4:77885422-77885441 | Msa0524420:intron | 30.0% |
| TGTATGCTTTATCTGTTGAT+TGG | + | chr3_4:77885531-77885550 | Msa0524420:intron | 30.0% | |
| TGCATTATTGGACTTCAATA+TGG | + | chr3_4:77885621-77885640 | Msa0524420:CDS | 30.0% | |
| GCATTATTGGACTTCAATAT+GGG | + | chr3_4:77885622-77885641 | Msa0524420:CDS | 30.0% | |
| ! | TTTTTACTGTAAACTGTCCA+CGG | + | chr3_4:77885932-77885951 | Msa0524420:intron | 30.0% |
| AACTTATATTAGGTTCTCCA+CGG | - | chr3_4:77885972-77885991 | None:intergenic | 30.0% | |
| GATTTATTTAGAGGAATTCC+TGG | - | chr3_4:77886111-77886130 | None:intergenic | 30.0% | |
| GTGTACAGAGATTTATTTAG+AGG | - | chr3_4:77886120-77886139 | None:intergenic | 30.0% | |
| TAAAGCCATAAATGTGAAAC+CGG | - | chr3_4:77886175-77886194 | None:intergenic | 30.0% | |
| GATTTAAGCATCAGTCTTTA+AGG | + | chr3_4:77886278-77886297 | Msa0524420:intron | 30.0% | |
| TGTTCTTGTATCTTCAAACT+TGG | + | chr3_4:77886445-77886464 | Msa0524420:CDS | 30.0% | |
| AAATCCTTGAATTGCAATCA+CGG | - | chr3_4:77886471-77886490 | None:intergenic | 30.0% | |
| ! | ATAGTTAATTGTTTGTTGGG+AGG | - | chr3_4:77886553-77886572 | None:intergenic | 30.0% |
| TTAGGAGTAGATAAGTTATG+AGG | - | chr3_4:77886777-77886796 | None:intergenic | 30.0% | |
| TTCCAAGTAGTAGATTGTGT+TGG | - | chr3_4:77883624-77883643 | None:intergenic | 35.0% | |
| GAAAATAACCACCTTGAAGA+AGG | - | chr3_4:77883686-77883705 | None:intergenic | 35.0% | |
| !! | CTTCAAGGTGGTTATTTTCA+CGG | + | chr3_4:77883687-77883706 | Msa0524420:intron | 35.0% |
| GTTCAAACTATACGCTTCTT+TGG | + | chr3_4:77883738-77883757 | Msa0524420:CDS | 35.0% | |
| TTTGAAGAAACTCGGATGTT+TGG | - | chr3_4:77883835-77883854 | None:intergenic | 35.0% | |
| ! | CACATCACACATTTTTATGC+AGG | + | chr3_4:77883939-77883958 | Msa0524420:intron | 35.0% |
| !! | GTTTCTAGCAGCAATATTGT+TGG | + | chr3_4:77883961-77883980 | Msa0524420:CDS | 35.0% |
| ATTTACTCCGGATTGTTGTA+TGG | + | chr3_4:77883986-77884005 | Msa0524420:CDS | 35.0% | |
| ATGGTCTATATGTTCCAGAT+TGG | + | chr3_4:77884005-77884024 | Msa0524420:CDS | 35.0% | |
| TATTCTCACGGTGTAAACAT+TGG | - | chr3_4:77884080-77884099 | None:intergenic | 35.0% | |
| AATGTTTACACCGTGAGAAT+AGG | + | chr3_4:77884079-77884098 | Msa0524420:intron | 35.0% | |
| AGAATAAATAGCTAAGTGGG+GGG | - | chr3_4:77884112-77884131 | None:intergenic | 35.0% | |
| CAGAATAAATAGCTAAGTGG+GGG | - | chr3_4:77884113-77884132 | None:intergenic | 35.0% | |
| GGACAGAATAAATAGCTAAG+TGG | - | chr3_4:77884116-77884135 | None:intergenic | 35.0% | |
| ACCAAGTTTCACTTTGTAGA+TGG | + | chr3_4:77884227-77884246 | Msa0524420:intron | 35.0% | |
| ACCATCTACAAAGTGAAACT+TGG | - | chr3_4:77884231-77884250 | None:intergenic | 35.0% | |
| GGCTAAATAATAGTGTGCAT+TGG | - | chr3_4:77884257-77884276 | None:intergenic | 35.0% | |
| ! | GCCTGTTTTCAGAAATCTTA+AGG | + | chr3_4:77884429-77884448 | Msa0524420:CDS | 35.0% |
| GATCCCATTTCTTTGTTCAA+TGG | + | chr3_4:77884464-77884483 | Msa0524420:intron | 35.0% | |
| AAAATGCCTTCTGGATCAAA+AGG | - | chr3_4:77884613-77884632 | None:intergenic | 35.0% | |
| !!! | TTGATCCAGAAGGCATTTTA+AGG | + | chr3_4:77884614-77884633 | Msa0524420:CDS | 35.0% |
| CAACACTTAACAAGATTGGA+GGG | - | chr3_4:77884666-77884685 | None:intergenic | 35.0% | |
| TCAACACTTAACAAGATTGG+AGG | - | chr3_4:77884667-77884686 | None:intergenic | 35.0% | |
| TTTGAAAGTTGTCTCCTATC+TGG | + | chr3_4:77884707-77884726 | Msa0524420:intron | 35.0% | |
| ATTTATAACGCTGTCCAGAT+AGG | - | chr3_4:77884724-77884743 | None:intergenic | 35.0% | |
| ATTGCTAAAGATCTCCTCTT+TGG | - | chr3_4:77884767-77884786 | None:intergenic | 35.0% | |
| AAGAGGAGATCTTTAGCAAT+AGG | + | chr3_4:77884767-77884786 | Msa0524420:intron | 35.0% | |
| GAGATCACTGTGTTAGAAAT+AGG | - | chr3_4:77884920-77884939 | None:intergenic | 35.0% | |
| CATAGAGAATAATAGCATGC+TGG | + | chr3_4:77884939-77884958 | Msa0524420:intron | 35.0% | |
| TAACGGAATACTTTGCTCAA+AGG | - | chr3_4:77884980-77884999 | None:intergenic | 35.0% | |
| ATTGTCTCAATAACCGGTAA+CGG | - | chr3_4:77884997-77885016 | None:intergenic | 35.0% | |
| TGTTGCATTGTCTCAATAAC+CGG | - | chr3_4:77885003-77885022 | None:intergenic | 35.0% | |
| GTTATTGAGACAATGCAACA+AGG | + | chr3_4:77885003-77885022 | Msa0524420:intron | 35.0% | |
| AAGGAGTTTACTGCGTTATT+AGG | - | chr3_4:77885076-77885095 | None:intergenic | 35.0% | |
| GTAAACTCCTTGTTGGATTT+AGG | + | chr3_4:77885085-77885104 | Msa0524420:intron | 35.0% | |
| AATAACTTCACTGAACTCTG+AGG | + | chr3_4:77885114-77885133 | Msa0524420:intron | 35.0% | |
| AATATGAAGTCAGTCAGGTA+AGG | - | chr3_4:77885273-77885292 | None:intergenic | 35.0% | |
| ATCTACTATGCATAATGGTG+CGG | + | chr3_4:77885301-77885320 | Msa0524420:intron | 35.0% | |
| ! | ATGCTTTATCTGTTGATTGG+TGG | + | chr3_4:77885534-77885553 | Msa0524420:intron | 35.0% |
| TAATACAACAACCAAGCTAC+AGG | - | chr3_4:77885704-77885723 | None:intergenic | 35.0% | |
| AAAAACCAAGCCAGTGATTT+AGG | - | chr3_4:77885863-77885882 | None:intergenic | 35.0% | |
| !!! | TCAGTTTCATTTTTGGCTCT+AGG | + | chr3_4:77885882-77885901 | Msa0524420:CDS | 35.0% |
| !!! | CAGTTTCATTTTTGGCTCTA+GGG | + | chr3_4:77885883-77885902 | Msa0524420:CDS | 35.0% |
| AACACAAACCTATTAACGCA+AGG | - | chr3_4:77885914-77885933 | None:intergenic | 35.0% | |
| ! | TTTTACTGTAAACTGTCCAC+GGG | + | chr3_4:77885933-77885952 | Msa0524420:intron | 35.0% |
| ! | TAATTTTTGTTCCACTCTGC+AGG | + | chr3_4:77886352-77886371 | Msa0524420:intron | 35.0% |
| !!! | TACAATGTTGTTTTCGGGTT+TGG | - | chr3_4:77886501-77886520 | None:intergenic | 35.0% |
| !! | TGCTGTTGCTTATGTTTTCA+TGG | + | chr3_4:77886526-77886545 | Msa0524420:intron | 35.0% |
| ATCCAATTACAGCATTCCAA+CGG | - | chr3_4:77886654-77886673 | None:intergenic | 35.0% | |
| AAACAAAACCGTCATATTCG+TGG | + | chr3_4:77886747-77886766 | Msa0524420:three_prime_UTR | 35.0% | |
| AGGACATATTGATACTTACG+AGG | + | chr3_4:77886874-77886893 | Msa0524420:three_prime_UTR | 35.0% | |
| ACGTTACATGGAAAGACTTT+AGG | - | chr3_4:77886934-77886953 | None:intergenic | 35.0% | |
| ATACAAAAACAGAGAGGCCA+CGG | - | chr3_4:77883347-77883366 | None:intergenic | 40.0% | |
| TAACTCTCTCTTTCTTCCTC+TGG | + | chr3_4:77883379-77883398 | Msa0524420:intron | 40.0% | |
| ! | ATGAGAAATGATGGGGAAGA+TGG | - | chr3_4:77883496-77883515 | None:intergenic | 40.0% |
| ATGGAGCATGAGAAATGATG+GGG | - | chr3_4:77883503-77883522 | None:intergenic | 40.0% | |
| CATGGAGCATGAGAAATGAT+GGG | - | chr3_4:77883504-77883523 | None:intergenic | 40.0% | |
| ATTTCTCATGCTCCATGGAA+TGG | + | chr3_4:77883507-77883526 | Msa0524420:CDS | 40.0% | |
| CCAACAAGGAAGAGAAAGAA+AGG | - | chr3_4:77883558-77883577 | None:intergenic | 40.0% | |
| CCTTTCTTTCTCTTCCTTGT+TGG | + | chr3_4:77883555-77883574 | Msa0524420:CDS | 40.0% | |
| AGCCAACACAATCTACTACT+TGG | + | chr3_4:77883619-77883638 | Msa0524420:intron | 40.0% | |
| GGATGCCAAGAATAAAGAGT+TGG | - | chr3_4:77883665-77883684 | None:intergenic | 40.0% | |
| ATTCTTGGCATCCTTCTTCA+AGG | + | chr3_4:77883672-77883691 | Msa0524420:intron | 40.0% | |
| GGCATCAATTCCTTCACATA+TGG | + | chr3_4:77883708-77883727 | Msa0524420:CDS | 40.0% | |
| AACGTCAAGACCATATGTGA+AGG | - | chr3_4:77883721-77883740 | None:intergenic | 40.0% | |
| AGAAACTCGGATGTTTGGAT+GGG | - | chr3_4:77883830-77883849 | None:intergenic | 40.0% | |
| AAGAAACTCGGATGTTTGGA+TGG | - | chr3_4:77883831-77883850 | None:intergenic | 40.0% | |
| TTGAATTGGAGGCAAAGAAG+AGG | - | chr3_4:77884053-77884072 | None:intergenic | 40.0% | |
| TCTTCTTTGCCTCCAATTCA+AGG | + | chr3_4:77884052-77884071 | Msa0524420:CDS | 40.0% | |
| TAAACATTGGCGCCTTGAAT+TGG | - | chr3_4:77884067-77884086 | None:intergenic | 40.0% | |
| GAAAACAAAAGTTGCAGCAC+AGG | - | chr3_4:77884137-77884156 | None:intergenic | 40.0% | |
| ! | AGCCTAAGATCTCCGTTTTA+AGG | + | chr3_4:77884191-77884210 | Msa0524420:intron | 40.0% |
| ! | GCCTAAGATCTCCGTTTTAA+GGG | + | chr3_4:77884192-77884211 | Msa0524420:intron | 40.0% |
| ACCCTTAAAACGGAGATCTT+AGG | - | chr3_4:77884196-77884215 | None:intergenic | 40.0% | |
| AATCATTCCAGCAGAATTGC+AGG | - | chr3_4:77884371-77884390 | None:intergenic | 40.0% | |
| ! | ACGGTGAACTATCTGAAACT+TGG | - | chr3_4:77884576-77884595 | None:intergenic | 40.0% |
| TTTCAGATAGTTCACCGTCA+TGG | + | chr3_4:77884578-77884597 | Msa0524420:CDS | 40.0% | |
| GGTTACCTTAAAATGCCTTC+TGG | - | chr3_4:77884622-77884641 | None:intergenic | 40.0% | |
| !! | AAGTGTTGAGAAACACAAGC+TGG | + | chr3_4:77884678-77884697 | Msa0524420:intron | 40.0% |
| ! | AGTGTTGAGAAACACAAGCT+GGG | + | chr3_4:77884679-77884698 | Msa0524420:intron | 40.0% |
| GGACAGCGTTATAAATGACA+AGG | + | chr3_4:77884728-77884747 | Msa0524420:intron | 40.0% | |
| ! | AATAGGCTGAAGTGTCATAG+AGG | + | chr3_4:77884784-77884803 | Msa0524420:intron | 40.0% |
| ! | ATAGGCTGAAGTGTCATAGA+GGG | + | chr3_4:77884785-77884804 | Msa0524420:intron | 40.0% |
| ! | TGAGCAAAGTATTCCGTTAC+CGG | + | chr3_4:77884981-77885000 | Msa0524420:intron | 40.0% |
| TAACGCAGTAAACTCCTTGT+TGG | + | chr3_4:77885078-77885097 | Msa0524420:intron | 40.0% | |
| GCTGCAGTTTCATGCATTAT+TGG | + | chr3_4:77885609-77885628 | Msa0524420:CDS | 40.0% | |
| ACATGATCTCACCTCTAAGT+TGG | - | chr3_4:77885658-77885677 | None:intergenic | 40.0% | |
| AATCTTGTATGCCTGTAGCT+TGG | + | chr3_4:77885690-77885709 | Msa0524420:intron | 40.0% | |
| CTTCCCTCTGTAACATAGTT+TGG | + | chr3_4:77885757-77885776 | Msa0524420:intron | 40.0% | |
| GTGCCAAACTATGTTACAGA+GGG | - | chr3_4:77885763-77885782 | None:intergenic | 40.0% | |
| AGTGCCAAACTATGTTACAG+AGG | - | chr3_4:77885764-77885783 | None:intergenic | 40.0% | |
| AAAGTAAAGGTCAGCTGAGT+CGG | - | chr3_4:77885811-77885830 | None:intergenic | 40.0% | |
| ACAATACTGTAGGACCACAA+AGG | + | chr3_4:77885834-77885853 | Msa0524420:intron | 40.0% | |
| CAATACTGTAGGACCACAAA+GGG | + | chr3_4:77885835-77885854 | Msa0524420:intron | 40.0% | |
| !!! | TTTCATTTTTGGCTCTAGGG+TGG | + | chr3_4:77885886-77885905 | Msa0524420:CDS | 40.0% |
| AGCTTCCGGTTTCACATTTA+TGG | + | chr3_4:77886167-77886186 | Msa0524420:CDS | 40.0% | |
| ACTCTGCAGGTAGATGTTTA+CGG | + | chr3_4:77886365-77886384 | Msa0524420:intron | 40.0% | |
| TTTCTTACTCGCAGATACAC+TGG | + | chr3_4:77886589-77886608 | Msa0524420:intron | 40.0% | |
| TCCAATTACAGCATTCCAAC+GGG | - | chr3_4:77886653-77886672 | None:intergenic | 40.0% | |
| !! | ATGATAGTAGCGTTGACCAG+AGG | - | chr3_4:77883398-77883417 | None:intergenic | 45.0% |
| CCATGGAGCATGAGAAATGA+TGG | - | chr3_4:77883505-77883524 | None:intergenic | 45.0% | |
| CCATCATTTCTCATGCTCCA+TGG | + | chr3_4:77883502-77883521 | Msa0524420:CDS | 45.0% | |
| AAGGCATGACGAAATCAGCA+AGG | - | chr3_4:77883539-77883558 | None:intergenic | 45.0% | |
| GTGCAAGAGAGATACCAACA+AGG | - | chr3_4:77883572-77883591 | None:intergenic | 45.0% | |
| ! | GCTTCTTTGGCGTTTTACAG+AGG | + | chr3_4:77883751-77883770 | Msa0524420:CDS | 45.0% |
| ATGTGTGATGTGAGCTGAGA+AGG | - | chr3_4:77883931-77883950 | None:intergenic | 45.0% | |
| CAGGTGAATTGTTCAGTGAG+AGG | + | chr3_4:77884331-77884350 | Msa0524420:intron | 45.0% | |
| TGTTCAGTGAGAGGTGATCT+TGG | + | chr3_4:77884340-77884359 | Msa0524420:CDS | 45.0% | |
| TGCTAGACATATTGCACTCC+TGG | - | chr3_4:77884549-77884568 | None:intergenic | 45.0% | |
| GAGTGCAATATGTCTAGCAC+TGG | + | chr3_4:77884550-77884569 | Msa0524420:CDS | 45.0% | |
| AAACGCTGCATGAAGTAGAC+TGG | - | chr3_4:77884643-77884662 | None:intergenic | 45.0% | |
| GAGACAATGCAACAAGGTCA+TGG | + | chr3_4:77885009-77885028 | Msa0524420:intron | 45.0% | |
| GTTGAACCTTTCCCAACACA+GGG | - | chr3_4:77885142-77885161 | None:intergenic | 45.0% | |
| GCACATTCTTGCCAACTTAG+AGG | + | chr3_4:77885644-77885663 | Msa0524420:CDS | 45.0% | |
| GTAAACATCTACCTGCAGAG+TGG | - | chr3_4:77886366-77886385 | None:intergenic | 45.0% | |
| CTCTGCAGGTAGATGTTTAC+GGG | + | chr3_4:77886366-77886385 | Msa0524420:intron | 45.0% | |
| CAGACGTTTGACAAGTGTGT+TGG | + | chr3_4:77886391-77886410 | Msa0524420:CDS | 45.0% | |
| GTTTGACAAGTGTGTTGGAG+TGG | + | chr3_4:77886396-77886415 | Msa0524420:CDS | 45.0% | |
| ACAAGTGTGTTGGAGTGGAT+GGG | + | chr3_4:77886401-77886420 | Msa0524420:CDS | 45.0% | |
| TTGGCCGTGATTGCAATTCA+AGG | + | chr3_4:77886464-77886483 | Msa0524420:CDS | 45.0% | |
| ATAACTTGGTCTAGTCCCGT+TGG | + | chr3_4:77886635-77886654 | Msa0524420:exon | 45.0% | |
| TCCCGTTGGAATGCTGTAAT+TGG | + | chr3_4:77886649-77886668 | Msa0524420:three_prime_UTR | 45.0% | |
| GAGGAGAACCACGAATATGA+CGG | - | chr3_4:77886758-77886777 | None:intergenic | 45.0% | |
| AGACATCAACGGAGGCAACT+CGG | - | chr3_4:77883323-77883342 | None:intergenic | 50.0% | |
| GCAAGGTGAAGACCATTCCA+TGG | - | chr3_4:77883522-77883541 | None:intergenic | 50.0% | |
| CTTGGCATCCTTCTTCAAGG+TGG | + | chr3_4:77883675-77883694 | Msa0524420:intron | 50.0% | |
| GGATGTTTGGATGGGAGAGT+CGG | - | chr3_4:77883822-77883841 | None:intergenic | 50.0% | |
| ! | GATGCATCGAAGTGCCAATC+TGG | - | chr3_4:77884022-77884041 | None:intergenic | 50.0% |
| ACATTGGCGCCTTGAATTGG+AGG | - | chr3_4:77884064-77884083 | None:intergenic | 50.0% | |
| GGGAGTGAAGCCTATTCTCA+CGG | - | chr3_4:77884092-77884111 | None:intergenic | 50.0% | |
| ATTCCAGCAGAATTGCAGGC+AGG | - | chr3_4:77884367-77884386 | None:intergenic | 50.0% | |
| ! | AAAGGAGCGTGACACCATGA+CGG | - | chr3_4:77884595-77884614 | None:intergenic | 50.0% |
| ! | CACGCTCCTTTTGATCCAGA+AGG | + | chr3_4:77884604-77884623 | Msa0524420:CDS | 50.0% |
| GATTGAGGGAGAGTCCAAAG+AGG | + | chr3_4:77884750-77884769 | Msa0524420:intron | 50.0% | |
| GGTTGAACCTTTCCCAACAC+AGG | - | chr3_4:77885143-77885162 | None:intergenic | 50.0% | |
| CACTGCGTCCTTTGATTGTG+TGG | + | chr3_4:77885780-77885799 | Msa0524420:intron | 50.0% | |
| CGGCTGTACCACACAATCAA+AGG | - | chr3_4:77885791-77885810 | None:intergenic | 50.0% | |
| AGTGATTTAGGCGCCCTTTG+TGG | - | chr3_4:77885851-77885870 | None:intergenic | 50.0% | |
| !! | ACAAAGGGCGCCTAAATCAC+TGG | + | chr3_4:77885850-77885869 | Msa0524420:CDS | 50.0% |
| GGGTGGTTCCTTGCGTTAAT+AGG | + | chr3_4:77885903-77885922 | Msa0524420:CDS | 50.0% | |
| GACAAGTGTGTTGGAGTGGA+TGG | + | chr3_4:77886400-77886419 | Msa0524420:CDS | 50.0% | |
| ACATCAACGGAGGCAACTCG+GGG | - | chr3_4:77883321-77883340 | None:intergenic | 55.0% | |
| GACATCAACGGAGGCAACTC+GGG | - | chr3_4:77883322-77883341 | None:intergenic | 55.0% | |
| GAGGCCACGGAAGACATCAA+CGG | - | chr3_4:77883334-77883353 | None:intergenic | 55.0% | |
| GTTTGGATGGGAGAGTCGGA+AGG | - | chr3_4:77883818-77883837 | None:intergenic | 55.0% | |
| !! | AACTCTGAGGTGCCCTGTGT+TGG | + | chr3_4:77885127-77885146 | Msa0524420:intron | 55.0% |
| !! | ACTCTGAGGTGCCCTGTGTT+GGG | + | chr3_4:77885128-77885147 | Msa0524420:intron | 55.0% |
| CGGACTGATGAATACACCCG+TGG | - | chr3_4:77885952-77885971 | None:intergenic | 55.0% | |
| CGGGTGTATTCATCAGTCCG+TGG | + | chr3_4:77885952-77885971 | Msa0524420:intron | 55.0% | |
| !! | CTGCTTAGCTCTGCAGCTTC+CGG | + | chr3_4:77886153-77886172 | Msa0524420:CDS | 55.0% |
| TTCAGCAGCAGCAACGCTCG+TGG | - | chr3_4:77883270-77883289 | None:intergenic | 60.0% | |
| CATCAACGGAGGCAACTCGG+GGG | - | chr3_4:77883320-77883339 | None:intergenic | 60.0% | |
| GCCTCCGTTGATGTCTTCCG+TGG | + | chr3_4:77883327-77883346 | Msa0524420:CDS | 60.0% | |
| GCCACGGAAGACATCAACGG+AGG | - | chr3_4:77883331-77883350 | None:intergenic | 60.0% | |
| GGACCTGCCTGCAATTCTGC+TGG | + | chr3_4:77884361-77884380 | Msa0524420:CDS | 60.0% | |
| ! | GAGGTGCCCTGTGTTGGGAA+AGG | + | chr3_4:77885133-77885152 | Msa0524420:intron | 60.0% |
| ! | GGGCGCCTAAATCACTGGCT+TGG | + | chr3_4:77885855-77885874 | Msa0524420:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77883156 | 77886954 | 77883156 | ID=Msa0524420;Name=Msa0524420 |
| chr3_4 | mRNA | 77883156 | 77886954 | 77883156 | ID=Msa0524420-mRNA-1;Parent=Msa0524420;Name=Msa0524420-mRNA-1;_AED=0.26;_eAED=0.26;_QI=102|0.9|0.81|1|0.8|0.63|11|316|381 |
| chr3_4 | exon | 77883156 | 77883362 | 77883156 | ID=Msa0524420-mRNA-1:exon:22881;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77883465 | 77883576 | 77883465 | ID=Msa0524420-mRNA-1:exon:22882;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77883694 | 77883871 | 77883694 | ID=Msa0524420-mRNA-1:exon:22883;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77883961 | 77884090 | 77883961 | ID=Msa0524420-mRNA-1:exon:22884;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77884334 | 77884450 | 77884334 | ID=Msa0524420-mRNA-1:exon:22885;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77884550 | 77884635 | 77884550 | ID=Msa0524420-mRNA-1:exon:22886;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77885599 | 77885665 | 77885599 | ID=Msa0524420-mRNA-1:exon:22887;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77885846 | 77885924 | 77885846 | ID=Msa0524420-mRNA-1:exon:22888;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77886112 | 77886203 | 77886112 | ID=Msa0524420-mRNA-1:exon:22889;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77886374 | 77886517 | 77886374 | ID=Msa0524420-mRNA-1:exon:22890;Parent=Msa0524420-mRNA-1 |
| chr3_4 | exon | 77886603 | 77886954 | 77886603 | ID=Msa0524420-mRNA-1:exon:22891;Parent=Msa0524420-mRNA-1 |
| chr3_4 | five_prime_UTR | 77883156 | 77883257 | 77883156 | ID=Msa0524420-mRNA-1:five_prime_utr;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77883258 | 77883362 | 77883258 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77883465 | 77883576 | 77883465 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77883694 | 77883871 | 77883694 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77883961 | 77884090 | 77883961 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77884334 | 77884450 | 77884334 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77884550 | 77884635 | 77884550 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77885599 | 77885665 | 77885599 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77885846 | 77885924 | 77885846 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77886112 | 77886203 | 77886112 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77886374 | 77886517 | 77886374 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | CDS | 77886603 | 77886638 | 77886603 | ID=Msa0524420-mRNA-1:cds;Parent=Msa0524420-mRNA-1 |
| chr3_4 | three_prime_UTR | 77886639 | 77886954 | 77886639 | ID=Msa0524420-mRNA-1:three_prime_utr;Parent=Msa0524420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
