Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425770 | XP_003608957.2 | 93.863 | 554 | 18 | 2 | 22 | 566 | 1 | 547 | 0.0 | 1055 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425770 | sp|C0SVV6|CB60A_ARATH | 47.081 | 531 | 208 | 14 | 46 | 559 | 13 | 487 | 2.72e-146 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425770 | G7JNV1 | 93.863 | 554 | 18 | 2 | 22 | 566 | 1 | 547 | 0.0 | 1055 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1396730 | Msa1425770 | 0.888165 | 7.516745e-73 | -8.615850e-47 |
| Msa1162060 | Msa1425770 | 0.800586 | 1.344256e-48 | -8.615850e-47 |
| Msa1210160 | Msa1425770 | 0.805045 | 1.613489e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425770 | MtrunA17_Chr4g0059411 | 93.863 | 554 | 18 | 2 | 22 | 566 | 1 | 547 | 0.0 | 1055 |
| Msa1425770 | MtrunA17_Chr4g0048161 | 49.167 | 360 | 162 | 7 | 25 | 375 | 15 | 362 | 8.26e-110 | 341 |
| Msa1425770 | MtrunA17_Chr2g0281171 | 47.922 | 361 | 165 | 7 | 25 | 375 | 16 | 363 | 3.36e-106 | 332 |
| Msa1425770 | MtrunA17_Chr2g0304831 | 45.856 | 362 | 180 | 6 | 25 | 378 | 11 | 364 | 8.87e-101 | 317 |
| Msa1425770 | MtrunA17_Chr4g0072691 | 47.633 | 338 | 157 | 6 | 46 | 375 | 5 | 330 | 1.73e-98 | 311 |
| Msa1425770 | MtrunA17_Chr8g0391221 | 46.866 | 335 | 156 | 7 | 22 | 342 | 1 | 327 | 3.94e-92 | 291 |
| Msa1425770 | MtrunA17_Chr8g0391211 | 43.855 | 358 | 166 | 9 | 10 | 342 | 51 | 398 | 7.96e-91 | 290 |
| Msa1425770 | MtrunA17_Chr6g0484121 | 46.349 | 315 | 151 | 8 | 30 | 334 | 14 | 320 | 1.29e-83 | 269 |
| Msa1425770 | MtrunA17_Chr6g0484131 | 45.652 | 322 | 143 | 8 | 30 | 334 | 14 | 320 | 1.85e-83 | 268 |
| Msa1425770 | MtrunA17_Chr6g0484111 | 45.397 | 315 | 154 | 8 | 30 | 334 | 14 | 320 | 1.65e-82 | 266 |
| Msa1425770 | MtrunA17_Chr7g0271691 | 40.690 | 290 | 160 | 6 | 79 | 364 | 51 | 332 | 3.57e-60 | 208 |
| Msa1425770 | MtrunA17_Chr7g0271681 | 36.823 | 277 | 167 | 6 | 104 | 376 | 3 | 275 | 5.95e-43 | 160 |
| Msa1425770 | MtrunA17_Chr7g0271671 | 35.577 | 312 | 183 | 10 | 56 | 361 | 51 | 350 | 1.04e-40 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425770 | AT5G62570.1 | 46.558 | 552 | 217 | 15 | 26 | 559 | 11 | 502 | 6.53e-150 | 441 |
| Msa1425770 | AT5G62570.2 | 47.081 | 531 | 208 | 14 | 46 | 559 | 13 | 487 | 2.76e-147 | 434 |
| Msa1425770 | AT5G62570.4 | 57.618 | 361 | 141 | 4 | 26 | 385 | 11 | 360 | 4.53e-143 | 418 |
| Msa1425770 | AT5G62570.3 | 59.516 | 289 | 106 | 3 | 26 | 314 | 11 | 288 | 2.20e-116 | 347 |
| Msa1425770 | AT5G57580.1 | 49.167 | 360 | 162 | 6 | 25 | 375 | 13 | 360 | 4.26e-111 | 345 |
| Msa1425770 | AT4G25800.1 | 50.000 | 354 | 156 | 6 | 32 | 375 | 7 | 349 | 3.31e-110 | 342 |
| Msa1425770 | AT4G25800.2 | 50.000 | 354 | 156 | 6 | 32 | 375 | 7 | 349 | 3.31e-110 | 342 |
| Msa1425770 | AT2G18750.3 | 45.658 | 403 | 179 | 11 | 39 | 416 | 32 | 419 | 4.28e-104 | 327 |
| Msa1425770 | AT2G18750.2 | 45.658 | 403 | 179 | 11 | 39 | 416 | 32 | 419 | 4.28e-104 | 327 |
| Msa1425770 | AT2G18750.1 | 45.658 | 403 | 179 | 11 | 39 | 416 | 32 | 419 | 4.28e-104 | 327 |
| Msa1425770 | AT2G24300.2 | 46.176 | 353 | 175 | 6 | 29 | 375 | 12 | 355 | 4.04e-97 | 308 |
| Msa1425770 | AT2G24300.3 | 46.176 | 353 | 175 | 6 | 29 | 375 | 16 | 359 | 4.58e-97 | 308 |
| Msa1425770 | AT4G31000.1 | 45.954 | 346 | 172 | 5 | 34 | 375 | 21 | 355 | 5.97e-97 | 306 |
| Msa1425770 | AT2G24300.1 | 48.013 | 302 | 150 | 4 | 80 | 375 | 8 | 308 | 7.14e-89 | 285 |
| Msa1425770 | AT1G73805.1 | 40.751 | 346 | 184 | 6 | 43 | 385 | 32 | 359 | 7.33e-81 | 261 |
| Msa1425770 | AT5G26920.3 | 45.342 | 322 | 157 | 6 | 44 | 361 | 25 | 331 | 3.57e-78 | 253 |
| Msa1425770 | AT5G26920.1 | 45.342 | 322 | 157 | 6 | 44 | 361 | 25 | 331 | 8.46e-77 | 253 |
| Msa1425770 | AT4G31000.2 | 43.333 | 300 | 147 | 3 | 80 | 375 | 54 | 334 | 2.27e-76 | 252 |
| Msa1425770 | AT5G26920.2 | 45.342 | 322 | 149 | 7 | 44 | 361 | 25 | 323 | 9.72e-75 | 248 |
Find 150 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGTAGGATGTTTC+TGG | 0.145942 | tig0025890:+26205 | None:intergenic |
| CAAAACCTTACCTATATAAT+TGG | 0.161881 | tig0025890:+22380 | None:intergenic |
| GCACTCAACCTAGGCGATTT+TGG | 0.228829 | tig0025890:-22922 | Msa1425770:CDS |
| AGTCCGAGGCTTTCGAAATT+AGG | 0.235035 | tig0025890:+22676 | None:intergenic |
| AGACAGATTCATTTATTGTT+AGG | 0.241777 | tig0025890:-24121 | Msa1425770:CDS |
| AGTTCCACCAACTGAGTAAA+TGG | 0.274052 | tig0025890:+22723 | None:intergenic |
| CGTTTAGTTGACACCTTAAC+AGG | 0.276122 | tig0025890:-24443 | Msa1425770:CDS |
| ATATCTCTCCCTGTCTTTAC+AGG | 0.292011 | tig0025890:-24506 | Msa1425770:CDS |
| TCCACCTTAGCTGAAGATTC+AGG | 0.298970 | tig0025890:+24401 | None:intergenic |
| CCTTGTCCAACTTGAATTAT+CGG | 0.307129 | tig0025890:+24211 | None:intergenic |
| ATATTGTTCTTGAAATCTTC+AGG | 0.317472 | tig0025890:+24329 | None:intergenic |
| GATTCAATAGTCCATGCTTT+TGG | 0.319325 | tig0025890:-22592 | Msa1425770:CDS |
| CAAGTCTGTCGGATGAAGTT+TGG | 0.348712 | tig0025890:-23601 | Msa1425770:CDS |
| CCTCGGTTCTCGGAGAGCTT+GGG | 0.357039 | tig0025890:+22836 | None:intergenic |
| GACAGATTCATTTATTGTTA+GGG | 0.366738 | tig0025890:-24120 | Msa1425770:CDS |
| GTTTGGTGTAGGATGTTTCT+GGG | 0.373093 | tig0025890:+26206 | None:intergenic |
| GCGCTCGATCCCTCGGTTCT+CGG | 0.373432 | tig0025890:+22826 | None:intergenic |
| GGAGTCGTAGGTTCAGGCTT+GGG | 0.382117 | tig0025890:-24190 | Msa1425770:CDS |
| TCGAAGAAGAAAGTGACATT+TGG | 0.384160 | tig0025890:-24355 | Msa1425770:CDS |
| CCCTTGGTCATAGATGTAGA+AGG | 0.389836 | tig0025890:+22472 | None:intergenic |
| AGTGTGAATAACCATCCATT+AGG | 0.393474 | tig0025890:+22878 | None:intergenic |
| GGCTTTCTACGTTTATCATC+TGG | 0.394435 | tig0025890:+25890 | None:intergenic |
| TTGAAGAGACAAAAGCTTGT+TGG | 0.396712 | tig0025890:+22804 | None:intergenic |
| ACAATCAGTTAGGAATTTGA+TGG | 0.399948 | tig0025890:-25200 | Msa1425770:CDS |
| ACAGTCACTGACCTGCTAAA+AGG | 0.407516 | tig0025890:+25863 | None:intergenic |
| GTATGAACTCTATTATATTA+CGG | 0.411051 | tig0025890:-25146 | Msa1425770:intron |
| GTTGTGTTATGAAGTTTGTT+TGG | 0.413139 | tig0025890:+26189 | None:intergenic |
| GCGAACAAGGGCTCTAGAAT+TGG | 0.417705 | tig0025890:+25175 | None:intergenic |
| TGAAGATGAGGCCTCCCTAA+TGG | 0.417771 | tig0025890:-22893 | Msa1425770:CDS |
| GGTTAGAGAGGAAGTTGAAT+TGG | 0.422677 | tig0025890:-24786 | Msa1425770:CDS |
| CTCTTCATCAACCACAATCA+TGG | 0.424245 | tig0025890:-26265 | Msa1425770:five_prime_UTR |
| TATGTAAATCTGCTTCAATA+TGG | 0.426831 | tig0025890:+22521 | None:intergenic |
| CTTAGATACGATCAACATCT+TGG | 0.427325 | tig0025890:-22655 | Msa1425770:CDS |
| ATCTGGTGTCTTGTTATCAT+CGG | 0.436614 | tig0025890:+25907 | None:intergenic |
| GGACAAGGAGTCGTAGGTTC+AGG | 0.437351 | tig0025890:-24196 | Msa1425770:CDS |
| AAAGAGTTGGTGACTTGGAC+TGG | 0.444825 | tig0025890:+22628 | None:intergenic |
| ACAAACAACCTTCCCTGTTA+AGG | 0.445794 | tig0025890:+24430 | None:intergenic |
| ACTAGTAGCTTGGACGACTA+TGG | 0.446998 | tig0025890:-22703 | Msa1425770:CDS |
| CAACGTTCTGAAATGGTTCA+TGG | 0.453414 | tig0025890:-22419 | Msa1425770:CDS |
| AGAGTTGTGGACAACTTTAA+CGG | 0.453745 | tig0025890:-24164 | Msa1425770:CDS |
| AGGTAGTCAACGTTCTGAAA+TGG | 0.456718 | tig0025890:-22426 | Msa1425770:CDS |
| TTTACAGGAGCTCGAATTGA+AGG | 0.464027 | tig0025890:-24491 | Msa1425770:CDS |
| AGACAGTAAGAATAAAAGAT+AGG | 0.465311 | tig0025890:+26020 | None:intergenic |
| AACAACGAAACCAATTATAT+AGG | 0.467623 | tig0025890:-22390 | Msa1425770:CDS |
| GTGGAAATTGTAGTCCTTGA+GGG | 0.468852 | tig0025890:-24383 | Msa1425770:CDS |
| AGGGAAAAGCTCAGAGGAGA+TGG | 0.469260 | tig0025890:-22453 | Msa1425770:CDS |
| TCTAAAAGACGGGCTTTGTA+TGG | 0.472462 | tig0025890:-24252 | Msa1425770:CDS |
| GTTTGGAGACTGGAAAAGAT+AGG | 0.473930 | tig0025890:-23584 | Msa1425770:CDS |
| GACAGTAAGAATGAAGAAAG+AGG | 0.476292 | tig0025890:+25958 | None:intergenic |
| TGATGAAGTTACAATCAGTT+AGG | 0.476619 | tig0025890:-25210 | Msa1425770:CDS |
| CTTGTTGGCGCTCGATCCCT+CGG | 0.478707 | tig0025890:+22819 | None:intergenic |
| ACAGGGAAGGTTGTTTGTAC+AGG | 0.480385 | tig0025890:-24425 | Msa1425770:CDS |
| TTCATACCACTCGGCGAACA+AGG | 0.481624 | tig0025890:+25162 | None:intergenic |
| CTTACAGTTCGCAGCTTCGC+TGG | 0.484817 | tig0025890:+23479 | None:intergenic |
| CGAAACCAATTATATAGGTA+AGG | 0.485755 | tig0025890:-22385 | Msa1425770:exon |
| GTAAATGGATGGCATGATAT+CGG | 0.486133 | tig0025890:+22738 | None:intergenic |
| CCATCCATTTACTCAGTTGG+TGG | 0.487484 | tig0025890:-22727 | Msa1425770:CDS |
| GTGTGAATAACCATCCATTA+GGG | 0.490508 | tig0025890:+22879 | None:intergenic |
| TTGTGTATAATTGAATCCTC+CGG | 0.491833 | tig0025890:+22777 | None:intergenic |
| ATAAAATTACATCTCCTGTA+AGG | 0.493324 | tig0025890:+24276 | None:intergenic |
| CATATACCGATAATTCAAGT+TGG | 0.493774 | tig0025890:-24217 | Msa1425770:CDS |
| TTGTTAGCAGATGCTTAGTA+AGG | 0.494878 | tig0025890:-22143 | Msa1425770:three_prime_UTR |
| AAGAATGAAGAAAGAGGAGA+AGG | 0.500129 | tig0025890:+25964 | None:intergenic |
| TCTGGTGTCTTGTTATCATC+GGG | 0.501066 | tig0025890:+25908 | None:intergenic |
| CTCGGTTCTCGGAGAGCTTG+GGG | 0.503013 | tig0025890:+22837 | None:intergenic |
| CAAACTTCATCCGACAGACT+TGG | 0.505825 | tig0025890:+23602 | None:intergenic |
| ATTCGAGCTCCTGTAAAGAC+AGG | 0.507114 | tig0025890:+24497 | None:intergenic |
| CTGGAAAAGATAGGCAAAGA+TGG | 0.509701 | tig0025890:-23575 | Msa1425770:CDS |
| ATGCCATCCATTTACTCAGT+TGG | 0.510710 | tig0025890:-22730 | Msa1425770:CDS |
| GTCGGATGAAGTTTGGAGAC+TGG | 0.514983 | tig0025890:-23594 | Msa1425770:CDS |
| TAAATACACCCTCCATGCAT+TGG | 0.516038 | tig0025890:-22275 | Msa1425770:three_prime_UTR |
| AGATTAAAGAGTTGGTGACT+TGG | 0.520779 | tig0025890:+22623 | None:intergenic |
| CATGTCACAGATTAAAGAGT+TGG | 0.522891 | tig0025890:+22615 | None:intergenic |
| AGCTCAGAGGAGATGGAGAA+AGG | 0.523989 | tig0025890:-22446 | Msa1425770:CDS |
| GTCATAGATGTAGAAGGTGC+CGG | 0.524024 | tig0025890:+22478 | None:intergenic |
| AATGCCGTGGGAGAAGTGAC+AGG | 0.524627 | tig0025890:-23119 | Msa1425770:CDS |
| CAAAACAGCTCTTTAACCTC+TGG | 0.534971 | tig0025890:+22239 | None:intergenic |
| CAGGCTTGGGGCAAGAGTTG+TGG | 0.535233 | tig0025890:-24177 | Msa1425770:CDS |
| CTTGGGAATGTGTAGATACT+GGG | 0.536637 | tig0025890:-23260 | Msa1425770:intron |
| TTGCCTAATTTCGAAAGCCT+CGG | 0.538472 | tig0025890:-22679 | Msa1425770:CDS |
| CAAAATTGAAACAAACAACA+TGG | 0.538574 | tig0025890:+25991 | None:intergenic |
| CTTCTTCGAAATCACCCTCA+AGG | 0.540752 | tig0025890:+24369 | None:intergenic |
| AATTACATCTCCTGTAAGGA+GGG | 0.541923 | tig0025890:+24280 | None:intergenic |
| CTTCGACTATGTCGCTCAAG+AGG | 0.542869 | tig0025890:-25934 | Msa1425770:CDS |
| GCAAAGATGGAGCTTTCCAC+AGG | 0.543333 | tig0025890:-23562 | Msa1425770:CDS |
| TTATGAAGTTTGTTTGGTGT+AGG | 0.543871 | tig0025890:+26195 | None:intergenic |
| ACCTGAATCTTCAGCTAAGG+TGG | 0.544995 | tig0025890:-24402 | Msa1425770:CDS |
| AATGTGTAGATACTGGGCAC+TGG | 0.545047 | tig0025890:-23254 | Msa1425770:intron |
| ACTTCATCCGACAGACTTGG+AGG | 0.546619 | tig0025890:+23605 | None:intergenic |
| TTCGACTATGTCGCTCAAGA+GGG | 0.547656 | tig0025890:-25933 | Msa1425770:CDS |
| ACCTTCTACATCTATGACCA+AGG | 0.551606 | tig0025890:-22473 | Msa1425770:CDS |
| CACGTAGTCTTCAATGCCGT+GGG | 0.551747 | tig0025890:-23131 | Msa1425770:CDS |
| AGGAGTCGTAGGTTCAGGCT+TGG | 0.554806 | tig0025890:-24191 | Msa1425770:CDS |
| GCTCGAATTGAAGGAGAAGA+TGG | 0.556383 | tig0025890:-24482 | Msa1425770:CDS |
| TCAGGCTGATGCTCAAATCT+CGG | 0.557953 | tig0025890:-22953 | Msa1425770:intron |
| AAGTAACCGTAGAGCATGCT+CGG | 0.558792 | tig0025890:-23211 | Msa1425770:CDS |
| AAAGACGGGCTTTGTATGGT+AGG | 0.569603 | tig0025890:-24248 | Msa1425770:CDS |
| ACGCGAAAGAAGAGAGTGAA+AGG | 0.569927 | tig0025890:+26309 | None:intergenic |
| CCAAGCTCTCCGAGAACCGA+GGG | 0.570483 | tig0025890:-22835 | Msa1425770:CDS |
| TGCTGTTGATAGCTTCATGC+CGG | 0.571069 | tig0025890:-22497 | Msa1425770:CDS |
| GATCTTCATCGCCAAAAGCA+TGG | 0.571117 | tig0025890:+22581 | None:intergenic |
| CAAGTTGGACAAGGAGTCGT+AGG | 0.571492 | tig0025890:-24202 | Msa1425770:CDS |
| AGAACAATATTGTGAGAGAG+AGG | 0.572757 | tig0025890:-24316 | Msa1425770:CDS |
| GACTTCTTTGCAGGTTAGAG+AGG | 0.574323 | tig0025890:-24798 | Msa1425770:intron |
| AGTTGGTGGAACTAGTAGCT+TGG | 0.575674 | tig0025890:-22713 | Msa1425770:CDS |
| AAAATTGAAACAAACAACAT+GGG | 0.575961 | tig0025890:+25992 | None:intergenic |
| TTCTGAAATGGTTCATGGTG+AGG | 0.576484 | tig0025890:-22414 | Msa1425770:CDS |
| CAACTCTTTAATCTGTGACA+TGG | 0.583895 | tig0025890:-22614 | Msa1425770:CDS |
| TCACGTAGTCTTCAATGCCG+TGG | 0.588166 | tig0025890:-23132 | Msa1425770:CDS |
| AGTTGACACCTTAACAGGGA+AGG | 0.590193 | tig0025890:-24438 | Msa1425770:CDS |
| ATGTGTAGATACTGGGCACT+GGG | 0.592570 | tig0025890:-23253 | Msa1425770:intron |
| GAGTCGTAGGTTCAGGCTTG+GGG | 0.595624 | tig0025890:-24189 | Msa1425770:CDS |
| CCACCAACTGAGTAAATGGA+TGG | 0.596205 | tig0025890:+22727 | None:intergenic |
| GGTGGAAATTGTAGTCCTTG+AGG | 0.597359 | tig0025890:-24384 | Msa1425770:CDS |
| AAATTGAAACAAACAACATG+GGG | 0.598875 | tig0025890:+25993 | None:intergenic |
| AGGACCTGAATCTTCAGCTA+AGG | 0.600320 | tig0025890:-24405 | Msa1425770:CDS |
| CAAAAGAGCCAAAATCGCCT+AGG | 0.600379 | tig0025890:+22914 | None:intergenic |
| CCGATAATTCAAGTTGGACA+AGG | 0.600483 | tig0025890:-24211 | Msa1425770:CDS |
| CTGGGATGTCTGCAAAGATG+TGG | 0.602378 | tig0025890:-23235 | Msa1425770:CDS |
| ACTGACCTGCTAAAAGGAGG+AGG | 0.606678 | tig0025890:+25869 | None:intergenic |
| AAATTACATCTCCTGTAAGG+AGG | 0.606850 | tig0025890:+24279 | None:intergenic |
| CCCAAGCTCTCCGAGAACCG+AGG | 0.613214 | tig0025890:-22836 | Msa1425770:CDS |
| ATTACATCTCCTGTAAGGAG+GGG | 0.613504 | tig0025890:+24281 | None:intergenic |
| GTCATTTCTGCACTCAACCT+AGG | 0.615671 | tig0025890:-22931 | Msa1425770:CDS |
| GATGAGGCCTCCCTAATGGA+TGG | 0.619733 | tig0025890:-22889 | Msa1425770:CDS |
| TTTCACGACTCAAACGCCTG+TGG | 0.621723 | tig0025890:+23546 | None:intergenic |
| AATATTGTGAGAGAGAGGGA+TGG | 0.622113 | tig0025890:-24311 | Msa1425770:CDS |
| GAACAATATTGTGAGAGAGA+GGG | 0.623743 | tig0025890:-24315 | Msa1425770:CDS |
| GAAAAGAATCACCATGATTG+TGG | 0.624396 | tig0025890:+26254 | None:intergenic |
| ACAAGTCCGAGCATGCTCTA+CGG | 0.625641 | tig0025890:+23205 | None:intergenic |
| TTGTCTCTTCAAAAGACCGG+AGG | 0.633128 | tig0025890:-22793 | Msa1425770:CDS |
| TAGAGCCCTTGTTCGCCGAG+TGG | 0.633276 | tig0025890:-25168 | Msa1425770:CDS |
| CAGTCCTGTCACTTCTCCCA+CGG | 0.639148 | tig0025890:+23115 | None:intergenic |
| ACACCACCCTCCAAGTCTGT+CGG | 0.639438 | tig0025890:-23612 | Msa1425770:CDS |
| CTTCATCCGACAGACTTGGA+GGG | 0.640576 | tig0025890:+23606 | None:intergenic |
| ATAATAGAGTTCATACCACT+CGG | 0.645837 | tig0025890:+25153 | None:intergenic |
| AATATTGTAGAGGACTAACA+TGG | 0.650405 | tig0025890:+22032 | None:intergenic |
| TGGGATGTCTGCAAAGATGT+GGG | 0.655279 | tig0025890:-23234 | Msa1425770:CDS |
| TTCGAGCTCCTGTAAAGACA+GGG | 0.660821 | tig0025890:+24498 | None:intergenic |
| GTCACTGACCTGCTAAAAGG+AGG | 0.661563 | tig0025890:+25866 | None:intergenic |
| TCATACCACTCGGCGAACAA+GGG | 0.663802 | tig0025890:+25163 | None:intergenic |
| CCTTCTACATCTATGACCAA+GGG | 0.672898 | tig0025890:-22472 | Msa1425770:CDS |
| TGAATAACCATCCATTAGGG+AGG | 0.673368 | tig0025890:+22882 | None:intergenic |
| GTTGATCGTATCTAAGTCCG+AGG | 0.677735 | tig0025890:+22662 | None:intergenic |
| CATCCGACAGACTTGGAGGG+TGG | 0.690633 | tig0025890:+23609 | None:intergenic |
| GTTTAGTTGACACCTTAACA+GGG | 0.693123 | tig0025890:-24442 | Msa1425770:CDS |
| TGACCAAGGGAAAAGCTCAG+AGG | 0.704879 | tig0025890:-22459 | Msa1425770:CDS |
| ACGGCATTGAAGACTACGTG+AGG | 0.714532 | tig0025890:+23134 | None:intergenic |
| TTTATTGTTAGGGATCACAG+AGG | 0.753319 | tig0025890:-24110 | Msa1425770:CDS |
| AATTGAAACAAACAACATGG+GGG | 0.764016 | tig0025890:+25994 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGCATTTTTATTTAATT+GGG | - | tig0025890:22654-22673 | Msa1425770:CDS | 10.0% |
| !! | TATTATTTAATTATCTGTTT+AGG | - | tig0025890:24906-24925 | Msa1425770:intron | 10.0% |
| !!! | TTATTTTTTAAATACTTTCA+TGG | - | tig0025890:25008-25027 | Msa1425770:intron | 10.0% |
| !!! | TATTTTTTAAATACTTTCAT+GGG | - | tig0025890:25009-25028 | Msa1425770:intron | 10.0% |
| !!! | GAATTGCATTTTTATTTAAT+TGG | - | tig0025890:22653-22672 | Msa1425770:CDS | 15.0% |
| !!! | ATTGCATTTTTATTTAATTG+GGG | - | tig0025890:22655-22674 | Msa1425770:CDS | 15.0% |
| !! | ACAGTTTATTTGATTATTAA+CGG | - | tig0025890:23069-23088 | Msa1425770:intron | 15.0% |
| !!! | ATGTAATATTATATGCTTTT+AGG | - | tig0025890:23296-23315 | Msa1425770:intron | 15.0% |
| !!! | TACCATATATTGATTATTTT+TGG | - | tig0025890:23475-23494 | Msa1425770:intron | 15.0% |
| !!! | GTAATTTTATATCTAAAAGA+CGG | - | tig0025890:24088-24107 | Msa1425770:intron | 15.0% |
| !!! | TAATTTTATATCTAAAAGAC+GGG | - | tig0025890:24089-24108 | Msa1425770:intron | 15.0% |
| !! | AAAATTGAAACAAACAACAT+GGG | + | tig0025890:22362-22381 | None:intergenic | 20.0% |
| !!! | AATTTTGATCTGAAATCAAA+TGG | - | tig0025890:22599-22618 | Msa1425770:CDS | 20.0% |
| !!! | ATTTTGATCTGAAATCAAAT+GGG | - | tig0025890:22600-22619 | Msa1425770:CDS | 20.0% |
| !! | CAGTTTATTTGATTATTAAC+GGG | - | tig0025890:23070-23089 | Msa1425770:intron | 20.0% |
| !! | GTATGAACTCTATTATATTA+CGG | - | tig0025890:23205-23224 | Msa1425770:CDS | 20.0% |
| !!! | TGCTTTTAGGATTTTTATAA+TGG | - | tig0025890:23309-23328 | Msa1425770:intron | 20.0% |
| !! | AATAATCAATATATGGTATC+AGG | + | tig0025890:23473-23492 | None:intergenic | 20.0% |
| !! | CTCCAAAAATAATCAATATA+TGG | + | tig0025890:23480-23499 | None:intergenic | 20.0% |
| !!! | CATATATTGATTATTTTTGG+AGG | - | tig0025890:23478-23497 | Msa1425770:intron | 20.0% |
| !! | GAAGAAAATCAATATGATAA+AGG | + | tig0025890:24549-24568 | None:intergenic | 20.0% |
| !!! | TATCATATTGATTTTCTTCT+TGG | - | tig0025890:24550-24569 | Msa1425770:CDS | 20.0% |
| !!! | TAAGATATTTGTTGTAACTA+AGG | + | tig0025890:24652-24671 | None:intergenic | 20.0% |
| !!! | ATATTTGAGCTTTTAAAACT+TGG | - | tig0025890:24681-24700 | Msa1425770:intron | 20.0% |
| !! | TTTGAGAGAAGAAAAATTAT+GGG | - | tig0025890:26038-26057 | Msa1425770:five_prime_UTR | 20.0% |
| !!! | GTAGTTTCGTTTTTATTTGA+TGG | - | tig0025890:22224-22243 | Msa1425770:three_prime_UTR | 25.0% |
| ! | AGACAGTAAGAATAAAAGAT+AGG | + | tig0025890:22334-22353 | None:intergenic | 25.0% |
| ! | AAATTGAAACAAACAACATG+GGG | + | tig0025890:22361-22380 | None:intergenic | 25.0% |
| ! | CAAAATTGAAACAAACAACA+TGG | + | tig0025890:22363-22382 | None:intergenic | 25.0% |
| !!! | TTTTGATCTGAAATCAAATG+GGG | - | tig0025890:22601-22620 | Msa1425770:CDS | 25.0% |
| ! | ACCTACTTAAATTCGAAAAA+GGG | + | tig0025890:22812-22831 | None:intergenic | 25.0% |
| !!! | ATTTCATGTTCTAAGGAAAA+AGG | - | tig0025890:22835-22854 | Msa1425770:CDS | 25.0% |
| !!! | TTTCATGTTCTAAGGAAAAA+GGG | - | tig0025890:22836-22855 | Msa1425770:CDS | 25.0% |
| ! | CAAGAATAATACACAAACAA+TGG | + | tig0025890:22867-22886 | None:intergenic | 25.0% |
| ! | CATTGTTTGTGTATTATTCT+TGG | - | tig0025890:22865-22884 | Msa1425770:CDS | 25.0% |
| !!! | ACTGTTATAGTTCTAAATTG+TGG | - | tig0025890:22897-22916 | Msa1425770:CDS | 25.0% |
| ! | AATAAACTGTGCATACAAAA+TGG | + | tig0025890:23059-23078 | None:intergenic | 25.0% |
| !!! | TTTGACATTTTGTTTTAGTG+TGG | - | tig0025890:23109-23128 | Msa1425770:CDS | 25.0% |
| ! | CAATTATATACCAGTAAAAG+TGG | + | tig0025890:23524-23543 | None:intergenic | 25.0% |
| !! | AAGAAAAAGCTTTTGCTTAA+TGG | - | tig0025890:23704-23723 | Msa1425770:intron | 25.0% |
| !!! | ATCTTTTTTGCTTTGTTTTC+AGG | - | tig0025890:23759-23778 | Msa1425770:intron | 25.0% |
| ! | ATATTGTTCTTGAAATCTTC+AGG | + | tig0025890:24025-24044 | None:intergenic | 25.0% |
| ! | ATAAAATTACATCTCCTGTA+AGG | + | tig0025890:24078-24097 | None:intergenic | 25.0% |
| ! | AGACAGATTCATTTATTGTT+AGG | - | tig0025890:24230-24249 | Msa1425770:CDS | 25.0% |
| ! | GACAGATTCATTTATTGTTA+GGG | - | tig0025890:24231-24250 | Msa1425770:CDS | 25.0% |
| !!! | ATTTCACTTTTAAGAGAGTA+AGG | - | tig0025890:24392-24411 | Msa1425770:CDS | 25.0% |
| !!! | TGTATTTTCGTTCTTGTTAT+TGG | - | tig0025890:24598-24617 | Msa1425770:intron | 25.0% |
| ! | AAAGTAGAAAGCTAAAAATC+TGG | - | tig0025890:24623-24642 | Msa1425770:intron | 25.0% |
| ! | TTTAGATAAGTACTACTAGT+TGG | - | tig0025890:25036-25055 | Msa1425770:intron | 25.0% |
| ! | GAATGAAAATGTGAAAAGTA+AGG | + | tig0025890:25341-25360 | None:intergenic | 25.0% |
| !!! | AAATTTAATTTTCCACGATC+AGG | - | tig0025890:25380-25399 | Msa1425770:intron | 25.0% |
| ! | TATGTAAATCTGCTTCAATA+TGG | + | tig0025890:25833-25852 | None:intergenic | 25.0% |
| ! | AACAACGAAACCAATTATAT+AGG | - | tig0025890:25961-25980 | Msa1425770:CDS | 25.0% |
| ! | CAAAACCTTACCTATATAAT+TGG | + | tig0025890:25974-25993 | None:intergenic | 25.0% |
| !!! | ACAGCACAATATTATTTTGT+CGG | + | tig0025890:26019-26038 | None:intergenic | 25.0% |
| ! | GTTTGAGAGAAGAAAAATTA+TGG | - | tig0025890:26037-26056 | Msa1425770:five_prime_UTR | 25.0% |
| !!! | ACTTTATCTTTTTTTCAGTC+AGG | - | tig0025890:26172-26191 | Msa1425770:five_prime_UTR | 25.0% |
| !! | TTCAAGATAGACTTTTATTC+TGG | - | tig0025890:26253-26272 | Msa1425770:five_prime_UTR | 25.0% |
| !! | TTATGAAGTTTGTTTGGTGT+AGG | + | tig0025890:22159-22178 | None:intergenic | 30.0% |
| ! | GTTGTGTTATGAAGTTTGTT+TGG | + | tig0025890:22165-22184 | None:intergenic | 30.0% |
| ! | TATCAGTTACTTCCTCTTTT+TGG | - | tig0025890:22257-22276 | Msa1425770:three_prime_UTR | 30.0% |
| AATTGAAACAAACAACATGG+GGG | + | tig0025890:22360-22379 | None:intergenic | 30.0% | |
| !!! | TTGATTGTGTTTTGAGGAAA+TGG | - | tig0025890:22559-22578 | Msa1425770:CDS | 30.0% |
| ATTGTGAAGCGAATTAATGT+TGG | - | tig0025890:22704-22723 | Msa1425770:CDS | 30.0% | |
| TTGTGAAGCGAATTAATGTT+GGG | - | tig0025890:22705-22724 | Msa1425770:CDS | 30.0% | |
| !!! | TCCCTTTTTCGAATTTAAGT+AGG | - | tig0025890:22808-22827 | Msa1425770:CDS | 30.0% |
| CACCTACTTAAATTCGAAAA+AGG | + | tig0025890:22813-22832 | None:intergenic | 30.0% | |
| !! | AAAATGGTTCTAAATTGCAG+TGG | + | tig0025890:23043-23062 | None:intergenic | 30.0% |
| TGATGAAGTTACAATCAGTT+AGG | - | tig0025890:23141-23160 | Msa1425770:CDS | 30.0% | |
| ACAATCAGTTAGGAATTTGA+TGG | - | tig0025890:23151-23170 | Msa1425770:CDS | 30.0% | |
| ATAATAGAGTTCATACCACT+CGG | + | tig0025890:23201-23220 | None:intergenic | 30.0% | |
| GTTGTATTGTATCCACTTTA+TGG | - | tig0025890:23432-23451 | Msa1425770:intron | 30.0% | |
| CAAAAAAGATGCATGAGAAA+CGG | + | tig0025890:23749-23768 | None:intergenic | 30.0% | |
| CATATACCGATAATTCAAGT+TGG | - | tig0025890:24134-24153 | Msa1425770:CDS | 30.0% | |
| ! | TTCGTTTATTATGGTTTGTG+TGG | + | tig0025890:24438-24457 | None:intergenic | 30.0% |
| CTACTGTTCTTCGTTTATTA+TGG | + | tig0025890:24447-24466 | None:intergenic | 30.0% | |
| TGATTCACATGAAAACAGTT+GGG | - | tig0025890:24477-24496 | Msa1425770:CDS | 30.0% | |
| ! | ATATATTTGTTGCCACAAGT+TGG | - | tig0025890:24930-24949 | Msa1425770:intron | 30.0% |
| AAATGACAAAGTTCTTTGCT+TGG | - | tig0025890:25073-25092 | Msa1425770:intron | 30.0% | |
| AATGACAAAGTTCTTTGCTT+GGG | - | tig0025890:25074-25093 | Msa1425770:intron | 30.0% | |
| ! | ATCAGAGATAAATGCCTTTT+CGG | + | tig0025890:25305-25324 | None:intergenic | 30.0% |
| TGAAAAGTAAGGAAATTAGC+GGG | + | tig0025890:25330-25349 | None:intergenic | 30.0% | |
| GTGAAAAGTAAGGAAATTAG+CGG | + | tig0025890:25331-25350 | None:intergenic | 30.0% | |
| TTGTGTATAATTGAATCCTC+CGG | + | tig0025890:25577-25596 | None:intergenic | 30.0% | |
| CGAAACCAATTATATAGGTA+AGG | - | tig0025890:25966-25985 | Msa1425770:CDS | 30.0% | |
| GAAAAGAATCACCATGATTG+TGG | + | tig0025890:22100-22119 | None:intergenic | 35.0% | |
| TATATTGTGACGCCAAAAAG+AGG | + | tig0025890:22272-22291 | None:intergenic | 35.0% | |
| AAGAATGAAGAAAGAGGAGA+AGG | + | tig0025890:22390-22409 | None:intergenic | 35.0% | |
| GACAGTAAGAATGAAGAAAG+AGG | + | tig0025890:22396-22415 | None:intergenic | 35.0% | |
| ! | ATCTGGTGTCTTGTTATCAT+CGG | + | tig0025890:22447-22466 | None:intergenic | 35.0% |
| !! | TGCTGTTTGATTGTGTTTTG+AGG | - | tig0025890:22553-22572 | Msa1425770:CDS | 35.0% |
| !!! | GTGTTTTGAGGAAATGGTAA+TGG | - | tig0025890:22565-22584 | Msa1425770:CDS | 35.0% |
| !! | GAAATCAAATGGGGTGTTTT+TGG | - | tig0025890:22610-22629 | Msa1425770:CDS | 35.0% |
| ATGTACTTATACTGTCGTTG+TGG | - | tig0025890:22737-22756 | Msa1425770:CDS | 35.0% | |
| AGGTGCAATTTCATGTTCTA+AGG | - | tig0025890:22828-22847 | Msa1425770:CDS | 35.0% | |
| GTATTGTATCCACTTTATGG+CGG | - | tig0025890:23435-23454 | Msa1425770:intron | 35.0% | |
| !!! | TTGATTATTTTTGGAGGAGC+TGG | - | tig0025890:23484-23503 | Msa1425770:CDS | 35.0% |
| GTTTAGTTGACACCTTAACA+GGG | - | tig0025890:23909-23928 | Msa1425770:intron | 35.0% | |
| TCGAAGAAGAAAGTGACATT+TGG | - | tig0025890:23996-24015 | Msa1425770:intron | 35.0% | |
| AGAACAATATTGTGAGAGAG+AGG | - | tig0025890:24035-24054 | Msa1425770:intron | 35.0% | |
| GAACAATATTGTGAGAGAGA+GGG | - | tig0025890:24036-24055 | Msa1425770:intron | 35.0% | |
| AATTACATCTCCTGTAAGGA+GGG | + | tig0025890:24074-24093 | None:intergenic | 35.0% | |
| AAATTACATCTCCTGTAAGG+AGG | + | tig0025890:24075-24094 | None:intergenic | 35.0% | |
| CCTTGTCCAACTTGAATTAT+CGG | + | tig0025890:24143-24162 | None:intergenic | 35.0% | |
| AGAGTTGTGGACAACTTTAA+CGG | - | tig0025890:24187-24206 | Msa1425770:CDS | 35.0% | |
| TTTATTGTTAGGGATCACAG+AGG | - | tig0025890:24241-24260 | Msa1425770:CDS | 35.0% | |
| GAGTAAGGTTCTGTTAGAAT+AGG | - | tig0025890:24407-24426 | Msa1425770:CDS | 35.0% | |
| GTGATTCACATGAAAACAGT+TGG | - | tig0025890:24476-24495 | Msa1425770:CDS | 35.0% | |
| ! | TACTAGTTGGTTTCTCTCTT+TGG | - | tig0025890:25049-25068 | Msa1425770:intron | 35.0% |
| !!! | TTTTGGCTCTTTTGAAGATG+AGG | - | tig0025890:25446-25465 | Msa1425770:intron | 35.0% |
| GTGTGAATAACCATCCATTA+GGG | + | tig0025890:25475-25494 | None:intergenic | 35.0% | |
| AGTGTGAATAACCATCCATT+AGG | + | tig0025890:25476-25495 | None:intergenic | 35.0% | |
| TTGAAGAGACAAAAGCTTGT+TGG | + | tig0025890:25550-25569 | None:intergenic | 35.0% | |
| ! | CTTTTGTCTCTTCAAAAGAC+CGG | - | tig0025890:25555-25574 | Msa1425770:intron | 35.0% |
| GTAAATGGATGGCATGATAT+CGG | + | tig0025890:25616-25635 | None:intergenic | 35.0% | |
| CTTAGATACGATCAACATCT+TGG | - | tig0025890:25696-25715 | Msa1425770:intron | 35.0% | |
| !! | AGATTAAAGAGTTGGTGACT+TGG | + | tig0025890:25731-25750 | None:intergenic | 35.0% |
| CATGTCACAGATTAAAGAGT+TGG | + | tig0025890:25739-25758 | None:intergenic | 35.0% | |
| CAACTCTTTAATCTGTGACA+TGG | - | tig0025890:25737-25756 | Msa1425770:intron | 35.0% | |
| ! | GATTCAATAGTCCATGCTTT+TGG | - | tig0025890:25759-25778 | Msa1425770:intron | 35.0% |
| !! | TCATCTGCAATTTTTCGATG+CGG | - | tig0025890:25791-25810 | Msa1425770:intron | 35.0% |
| TACAAAAACCAATGCATGGA+GGG | + | tig0025890:26087-26106 | None:intergenic | 35.0% | |
| AAGCTACAAAAACCAATGCA+TGG | + | tig0025890:26091-26110 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTCAGTCAGGAG+AGG | - | tig0025890:26177-26196 | Msa1425770:five_prime_UTR | 35.0% |
| TTGTTAGCAGATGCTTAGTA+AGG | - | tig0025890:26208-26227 | Msa1425770:five_prime_UTR | 35.0% | |
| CTCTTCATCAACCACAATCA+TGG | - | tig0025890:22086-22105 | Msa1425770:three_prime_UTR | 40.0% | |
| !! | GTTTGGTGTAGGATGTTTCT+GGG | + | tig0025890:22148-22167 | None:intergenic | 40.0% |
| !! | TGTTTGGTGTAGGATGTTTC+TGG | + | tig0025890:22149-22168 | None:intergenic | 40.0% |
| ! | TCTGGTGTCTTGTTATCATC+GGG | + | tig0025890:22446-22465 | None:intergenic | 40.0% |
| GGCTTTCTACGTTTATCATC+TGG | + | tig0025890:22464-22483 | None:intergenic | 40.0% | |
| TGCCAGGGATGAAATGAAAT+GGG | - | tig0025890:22766-22785 | Msa1425770:CDS | 40.0% | |
| TTCCCATTTCATTTCATCCC+TGG | + | tig0025890:22771-22790 | None:intergenic | 40.0% | |
| GTGGTTGCAACTGAAATTGT+TGG | - | tig0025890:22916-22935 | Msa1425770:CDS | 40.0% | |
| GACAAATGCATGCACAATTG+TGG | + | tig0025890:22982-23001 | None:intergenic | 40.0% | |
| TATTTACAGCCCACAAAGCA+TGG | + | tig0025890:23403-23422 | None:intergenic | 40.0% | |
| AAAGAATAGCCGCCATAAAG+TGG | + | tig0025890:23447-23466 | None:intergenic | 40.0% | |
| ! | CTTTATGGCGGCTATTCTTT+TGG | - | tig0025890:23447-23466 | Msa1425770:intron | 40.0% |
| !!! | TATTTTTGGAGGAGCTGGTT+TGG | - | tig0025890:23489-23508 | Msa1425770:CDS | 40.0% |
| !! | ATTTTTGGAGGAGCTGGTTT+GGG | - | tig0025890:23490-23509 | Msa1425770:CDS | 40.0% |
| !!! | GGTTTTGGTTCCACTTTTAC+TGG | - | tig0025890:23511-23530 | Msa1425770:CDS | 40.0% |
| ATGCTATGTGACTTCTTTGC+AGG | - | tig0025890:23544-23563 | Msa1425770:CDS | 40.0% | |
| GGTTAGAGAGGAAGTTGAAT+TGG | - | tig0025890:23565-23584 | Msa1425770:CDS | 40.0% | |
| CATACGCAACTCGATAAATG+AGG | + | tig0025890:23661-23680 | None:intergenic | 40.0% | |
| !! | GAAGCAAAGGGAATGGATTA+TGG | - | tig0025890:23680-23699 | Msa1425770:intron | 40.0% |
| !!! | TGCTTTGTTTTCAGGACTTG+TGG | - | tig0025890:23767-23786 | Msa1425770:intron | 40.0% |
| !! | TGTTTTCAGGACTTGTGGAA+AGG | - | tig0025890:23772-23791 | Msa1425770:intron | 40.0% |
| ATATCTCTCCCTGTCTTTAC+AGG | - | tig0025890:23845-23864 | Msa1425770:intron | 40.0% | |
| TTTACAGGAGCTCGAATTGA+AGG | - | tig0025890:23860-23879 | Msa1425770:intron | 40.0% | |
| CGTTTAGTTGACACCTTAAC+AGG | - | tig0025890:23908-23927 | Msa1425770:intron | 40.0% | |
| ACAAACAACCTTCCCTGTTA+AGG | + | tig0025890:23924-23943 | None:intergenic | 40.0% | |
| GTGGAAATTGTAGTCCTTGA+GGG | - | tig0025890:23968-23987 | Msa1425770:intron | 40.0% | |
| AATATTGTGAGAGAGAGGGA+TGG | - | tig0025890:24040-24059 | Msa1425770:intron | 40.0% | |
| ATTACATCTCCTGTAAGGAG+GGG | + | tig0025890:24073-24092 | None:intergenic | 40.0% | |
| ! | TCTAAAAGACGGGCTTTGTA+TGG | - | tig0025890:24099-24118 | Msa1425770:intron | 40.0% |
| !! | CCGATAATTCAAGTTGGACA+AGG | - | tig0025890:24140-24159 | Msa1425770:CDS | 40.0% |
| GTTTGGAGACTGGAAAAGAT+AGG | - | tig0025890:24767-24786 | Msa1425770:CDS | 40.0% | |
| CTGGAAAAGATAGGCAAAGA+TGG | - | tig0025890:24776-24795 | Msa1425770:CDS | 40.0% | |
| TTGACATGCTTACCAACTTG+TGG | + | tig0025890:24945-24964 | None:intergenic | 40.0% | |
| CTTGGGAATGTGTAGATACT+GGG | - | tig0025890:25091-25110 | Msa1425770:intron | 40.0% | |
| ! | TAAGCTGTCTGAAACCGAAA+AGG | - | tig0025890:25288-25307 | Msa1425770:intron | 40.0% |
| TGAATAACCATCCATTAGGG+AGG | + | tig0025890:25472-25491 | None:intergenic | 40.0% | |
| ATGCCATCCATTTACTCAGT+TGG | - | tig0025890:25621-25640 | Msa1425770:intron | 40.0% | |
| AGTTCCACCAACTGAGTAAA+TGG | + | tig0025890:25631-25650 | None:intergenic | 40.0% | |
| TTGCCTAATTTCGAAAGCCT+CGG | - | tig0025890:25672-25691 | Msa1425770:intron | 40.0% | |
| ACCTTCTACATCTATGACCA+AGG | - | tig0025890:25878-25897 | Msa1425770:CDS | 40.0% | |
| CCTTCTACATCTATGACCAA+GGG | - | tig0025890:25879-25898 | Msa1425770:CDS | 40.0% | |
| !! | AGGTAGTCAACGTTCTGAAA+TGG | - | tig0025890:25925-25944 | Msa1425770:CDS | 40.0% |
| !! | CAACGTTCTGAAATGGTTCA+TGG | - | tig0025890:25932-25951 | Msa1425770:CDS | 40.0% |
| !! | TTCTGAAATGGTTCATGGTG+AGG | - | tig0025890:25937-25956 | Msa1425770:CDS | 40.0% |
| TAAATACACCCTCCATGCAT+TGG | - | tig0025890:26076-26095 | Msa1425770:five_prime_UTR | 40.0% | |
| CTACAAAAACCAATGCATGG+AGG | + | tig0025890:26088-26107 | None:intergenic | 40.0% | |
| CAAAACAGCTCTTTAACCTC+TGG | + | tig0025890:26115-26134 | None:intergenic | 40.0% | |
| ACGCGAAAGAAGAGAGTGAA+AGG | + | tig0025890:22045-22064 | None:intergenic | 45.0% | |
| TTCGACTATGTCGCTCAAGA+GGG | - | tig0025890:22418-22437 | Msa1425770:CDS | 45.0% | |
| ACAGTCACTGACCTGCTAAA+AGG | + | tig0025890:22491-22510 | None:intergenic | 45.0% | |
| CTGCCAGGGATGAAATGAAA+TGG | - | tig0025890:22765-22784 | Msa1425770:CDS | 45.0% | |
| TGAGTTACCACCATGCTTTG+TGG | - | tig0025890:23390-23409 | Msa1425770:intron | 45.0% | |
| GAGTTACCACCATGCTTTGT+GGG | - | tig0025890:23391-23410 | Msa1425770:intron | 45.0% | |
| GACTTCTTTGCAGGTTAGAG+AGG | - | tig0025890:23553-23572 | Msa1425770:CDS | 45.0% | |
| ! | TCGAGTTGCGTATGAAGCAA+AGG | - | tig0025890:23667-23686 | Msa1425770:intron | 45.0% |
| CGAGTTGCGTATGAAGCAAA+GGG | - | tig0025890:23668-23687 | Msa1425770:intron | 45.0% | |
| TGCGTATGAAGCAAAGGGAA+TGG | - | tig0025890:23673-23692 | Msa1425770:intron | 45.0% | |
| TTCGAGCTCCTGTAAAGACA+GGG | + | tig0025890:23856-23875 | None:intergenic | 45.0% | |
| ATTCGAGCTCCTGTAAAGAC+AGG | + | tig0025890:23857-23876 | None:intergenic | 45.0% | |
| GCTCGAATTGAAGGAGAAGA+TGG | - | tig0025890:23869-23888 | Msa1425770:intron | 45.0% | |
| AGTTGACACCTTAACAGGGA+AGG | - | tig0025890:23913-23932 | Msa1425770:intron | 45.0% | |
| ACAGGGAAGGTTGTTTGTAC+AGG | - | tig0025890:23926-23945 | Msa1425770:intron | 45.0% | |
| AGGACCTGAATCTTCAGCTA+AGG | - | tig0025890:23946-23965 | Msa1425770:intron | 45.0% | |
| ACCTGAATCTTCAGCTAAGG+TGG | - | tig0025890:23949-23968 | Msa1425770:intron | 45.0% | |
| TCCACCTTAGCTGAAGATTC+AGG | + | tig0025890:23953-23972 | None:intergenic | 45.0% | |
| GGTGGAAATTGTAGTCCTTG+AGG | - | tig0025890:23967-23986 | Msa1425770:intron | 45.0% | |
| CTTCTTCGAAATCACCCTCA+AGG | + | tig0025890:23985-24004 | None:intergenic | 45.0% | |
| ! | AAAGACGGGCTTTGTATGGT+AGG | - | tig0025890:24103-24122 | Msa1425770:intron | 45.0% |
| CAAACTTCATCCGACAGACT+TGG | + | tig0025890:24752-24771 | None:intergenic | 45.0% | |
| CAAGTCTGTCGGATGAAGTT+TGG | - | tig0025890:24750-24769 | Msa1425770:intron | 45.0% | |
| GCTTGGGAATGTGTAGATAC+TGG | - | tig0025890:25090-25109 | Msa1425770:intron | 45.0% | |
| AATGTGTAGATACTGGGCAC+TGG | - | tig0025890:25097-25116 | Msa1425770:intron | 45.0% | |
| ATGTGTAGATACTGGGCACT+GGG | - | tig0025890:25098-25117 | Msa1425770:intron | 45.0% | |
| TGGGATGTCTGCAAAGATGT+GGG | - | tig0025890:25117-25136 | Msa1425770:intron | 45.0% | |
| AAGTAACCGTAGAGCATGCT+CGG | - | tig0025890:25140-25159 | Msa1425770:intron | 45.0% | |
| TCAGGCTGATGCTCAAATCT+CGG | - | tig0025890:25398-25417 | Msa1425770:intron | 45.0% | |
| GTCATTTCTGCACTCAACCT+AGG | - | tig0025890:25420-25439 | Msa1425770:intron | 45.0% | |
| CAAAAGAGCCAAAATCGCCT+AGG | + | tig0025890:25440-25459 | None:intergenic | 45.0% | |
| TTGTCTCTTCAAAAGACCGG+AGG | - | tig0025890:25558-25577 | Msa1425770:intron | 45.0% | |
| CCACCAACTGAGTAAATGGA+TGG | + | tig0025890:25627-25646 | None:intergenic | 45.0% | |
| CCATCCATTTACTCAGTTGG+TGG | - | tig0025890:25624-25643 | Msa1425770:intron | 45.0% | |
| !! | AGTTGGTGGAACTAGTAGCT+TGG | - | tig0025890:25638-25657 | Msa1425770:intron | 45.0% |
| ACTAGTAGCTTGGACGACTA+TGG | - | tig0025890:25648-25667 | Msa1425770:intron | 45.0% | |
| AGTCCGAGGCTTTCGAAATT+AGG | + | tig0025890:25678-25697 | None:intergenic | 45.0% | |
| GTTGATCGTATCTAAGTCCG+AGG | + | tig0025890:25692-25711 | None:intergenic | 45.0% | |
| !! | AAAGAGTTGGTGACTTGGAC+TGG | + | tig0025890:25726-25745 | None:intergenic | 45.0% |
| GATCTTCATCGCCAAAAGCA+TGG | + | tig0025890:25773-25792 | None:intergenic | 45.0% | |
| !! | TGCTGTTGATAGCTTCATGC+CGG | - | tig0025890:25854-25873 | Msa1425770:intron | 45.0% |
| ! | GTCATAGATGTAGAAGGTGC+CGG | + | tig0025890:25876-25895 | None:intergenic | 45.0% |
| CCCTTGGTCATAGATGTAGA+AGG | + | tig0025890:25882-25901 | None:intergenic | 45.0% | |
| !! | TGGTTTTTGTAGCTTGCCAG+AGG | - | tig0025890:26096-26115 | Msa1425770:five_prime_UTR | 45.0% |
| !!! | ATATAGTTTTTATTATATAT+TGG | - | tig0025890:22287-22306 | Msa1425770:three_prime_UTR | 5.0% |
| CTTCGACTATGTCGCTCAAG+AGG | - | tig0025890:22417-22436 | Msa1425770:CDS | 50.0% | |
| TCGACTATGTCGCTCAAGAG+GGG | - | tig0025890:22419-22438 | Msa1425770:CDS | 50.0% | |
| ! | GAAAGCCTCCTCCTTTTAGC+AGG | - | tig0025890:22477-22496 | Msa1425770:CDS | 50.0% |
| ACTGACCTGCTAAAAGGAGG+AGG | + | tig0025890:22485-22504 | None:intergenic | 50.0% | |
| GTCACTGACCTGCTAAAAGG+AGG | + | tig0025890:22488-22507 | None:intergenic | 50.0% | |
| TCGTTGTGGAATGTCTGCCA+GGG | - | tig0025890:22751-22770 | Msa1425770:CDS | 50.0% | |
| !! | GCGAACAAGGGCTCTAGAAT+TGG | + | tig0025890:23179-23198 | None:intergenic | 50.0% |
| TCATACCACTCGGCGAACAA+GGG | + | tig0025890:23191-23210 | None:intergenic | 50.0% | |
| TTCATACCACTCGGCGAACA+AGG | + | tig0025890:23192-23211 | None:intergenic | 50.0% | |
| TTACAGCCCACAAAGCATGG+TGG | + | tig0025890:23400-23419 | None:intergenic | 50.0% | |
| GGAAAAAAGCCCCTCCTTAC+AGG | - | tig0025890:24061-24080 | Msa1425770:intron | 50.0% | |
| ! | CAAGTTGGACAAGGAGTCGT+AGG | - | tig0025890:24149-24168 | Msa1425770:CDS | 50.0% |
| CTTCATCCGACAGACTTGGA+GGG | + | tig0025890:24748-24767 | None:intergenic | 50.0% | |
| ACTTCATCCGACAGACTTGG+AGG | + | tig0025890:24749-24768 | None:intergenic | 50.0% | |
| GTCGGATGAAGTTTGGAGAC+TGG | - | tig0025890:24757-24776 | Msa1425770:CDS | 50.0% | |
| GCAAAGATGGAGCTTTCCAC+AGG | - | tig0025890:24789-24808 | Msa1425770:intron | 50.0% | |
| TTTCACGACTCAAACGCCTG+TGG | + | tig0025890:24808-24827 | None:intergenic | 50.0% | |
| CTGGGATGTCTGCAAAGATG+TGG | - | tig0025890:25116-25135 | Msa1425770:intron | 50.0% | |
| ACAAGTCCGAGCATGCTCTA+CGG | + | tig0025890:25149-25168 | None:intergenic | 50.0% | |
| ! | ACGGCATTGAAGACTACGTG+AGG | + | tig0025890:25220-25239 | None:intergenic | 50.0% |
| TCACGTAGTCTTCAATGCCG+TGG | - | tig0025890:25219-25238 | Msa1425770:CDS | 50.0% | |
| CACGTAGTCTTCAATGCCGT+GGG | - | tig0025890:25220-25239 | Msa1425770:CDS | 50.0% | |
| TTTGAGCATCAGCCTGATCG+TGG | + | tig0025890:25395-25414 | None:intergenic | 50.0% | |
| ! | GCACTCAACCTAGGCGATTT+TGG | - | tig0025890:25429-25448 | Msa1425770:intron | 50.0% |
| TGAAGATGAGGCCTCCCTAA+TGG | - | tig0025890:25458-25477 | Msa1425770:intron | 50.0% | |
| TGACCAAGGGAAAAGCTCAG+AGG | - | tig0025890:25892-25911 | Msa1425770:CDS | 50.0% | |
| ! | TCTCCTCTGAGCTTTTCCCT+TGG | + | tig0025890:25898-25917 | None:intergenic | 50.0% |
| AGGGAAAAGCTCAGAGGAGA+TGG | - | tig0025890:25898-25917 | Msa1425770:CDS | 50.0% | |
| AGCTCAGAGGAGATGGAGAA+AGG | - | tig0025890:25905-25924 | Msa1425770:CDS | 50.0% | |
| GTCGTTGTGGAATGTCTGCC+AGG | - | tig0025890:22750-22769 | Msa1425770:CDS | 55.0% | |
| !!! | GGAGGAGCTGGTTTGGGTTT+TGG | - | tig0025890:23496-23515 | Msa1425770:CDS | 55.0% |
| GGACAAGGAGTCGTAGGTTC+AGG | - | tig0025890:24155-24174 | Msa1425770:CDS | 55.0% | |
| AGGAGTCGTAGGTTCAGGCT+TGG | - | tig0025890:24160-24179 | Msa1425770:CDS | 55.0% | |
| GGAGTCGTAGGTTCAGGCTT+GGG | - | tig0025890:24161-24180 | Msa1425770:CDS | 55.0% | |
| GAGTCGTAGGTTCAGGCTTG+GGG | - | tig0025890:24162-24181 | Msa1425770:CDS | 55.0% | |
| ACACCACCCTCCAAGTCTGT+CGG | - | tig0025890:24739-24758 | Msa1425770:intron | 55.0% | |
| CTTACAGTTCGCAGCTTCGC+TGG | + | tig0025890:24875-24894 | None:intergenic | 55.0% | |
| AATGCCGTGGGAGAAGTGAC+AGG | - | tig0025890:25232-25251 | Msa1425770:intron | 55.0% | |
| ! | CAGTCCTGTCACTTCTCCCA+CGG | + | tig0025890:25239-25258 | None:intergenic | 55.0% |
| GATGAGGCCTCCCTAATGGA+TGG | - | tig0025890:25462-25481 | Msa1425770:intron | 55.0% | |
| TAGAGCCCTTGTTCGCCGAG+TGG | - | tig0025890:23183-23202 | Msa1425770:CDS | 60.0% | |
| CAGGCTTGGGGCAAGAGTTG+TGG | - | tig0025890:24174-24193 | Msa1425770:CDS | 60.0% | |
| CATCCGACAGACTTGGAGGG+TGG | + | tig0025890:24745-24764 | None:intergenic | 60.0% | |
| CTCGGTTCTCGGAGAGCTTG+GGG | + | tig0025890:25517-25536 | None:intergenic | 60.0% | |
| CCTCGGTTCTCGGAGAGCTT+GGG | + | tig0025890:25518-25537 | None:intergenic | 60.0% | |
| CCAAGCTCTCCGAGAACCGA+GGG | - | tig0025890:25516-25535 | Msa1425770:intron | 60.0% | |
| CTTGTTGGCGCTCGATCCCT+CGG | + | tig0025890:25535-25554 | None:intergenic | 60.0% | |
| CCCAAGCTCTCCGAGAACCG+AGG | - | tig0025890:25515-25534 | Msa1425770:intron | 65.0% | |
| CCCTCGGTTCTCGGAGAGCT+TGG | + | tig0025890:25519-25538 | None:intergenic | 65.0% | |
| GCGCTCGATCCCTCGGTTCT+CGG | + | tig0025890:25528-25547 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025890 | gene | 22039 | 26334 | 22039 | ID=Msa1425770;Name=Msa1425770 |
| tig0025890 | mRNA | 22039 | 26334 | 22039 | ID=Msa1425770-mRNA-1;Parent=Msa1425770;Name=Msa1425770-mRNA-1;_AED=0.09;_eAED=0.09;_QI=323|0.66|0.71|1|1|1|7|348|566 |
| tig0025890 | exon | 22039 | 22971 | 22039 | ID=Msa1425770-mRNA-1:exon:4468;Parent=Msa1425770-mRNA-1 |
| tig0025890 | exon | 23091 | 23267 | 23091 | ID=Msa1425770-mRNA-1:exon:4467;Parent=Msa1425770-mRNA-1 |
| tig0025890 | exon | 23484 | 23644 | 23484 | ID=Msa1425770-mRNA-1:exon:4466;Parent=Msa1425770-mRNA-1 |
| tig0025890 | exon | 24105 | 24592 | 24105 | ID=Msa1425770-mRNA-1:exon:4465;Parent=Msa1425770-mRNA-1 |
| tig0025890 | exon | 24755 | 24807 | 24755 | ID=Msa1425770-mRNA-1:exon:4464;Parent=Msa1425770-mRNA-1 |
| tig0025890 | exon | 25147 | 25246 | 25147 | ID=Msa1425770-mRNA-1:exon:4463;Parent=Msa1425770-mRNA-1 |
| tig0025890 | exon | 25875 | 26334 | 25875 | ID=Msa1425770-mRNA-1:exon:4462;Parent=Msa1425770-mRNA-1 |
| tig0025890 | five_prime_UTR | 26012 | 26334 | 26012 | ID=Msa1425770-mRNA-1:five_prime_utr;Parent=Msa1425770-mRNA-1 |
| tig0025890 | CDS | 25875 | 26011 | 25875 | ID=Msa1425770-mRNA-1:cds;Parent=Msa1425770-mRNA-1 |
| tig0025890 | CDS | 25147 | 25246 | 25147 | ID=Msa1425770-mRNA-1:cds;Parent=Msa1425770-mRNA-1 |
| tig0025890 | CDS | 24755 | 24807 | 24755 | ID=Msa1425770-mRNA-1:cds;Parent=Msa1425770-mRNA-1 |
| tig0025890 | CDS | 24105 | 24592 | 24105 | ID=Msa1425770-mRNA-1:cds;Parent=Msa1425770-mRNA-1 |
| tig0025890 | CDS | 23484 | 23644 | 23484 | ID=Msa1425770-mRNA-1:cds;Parent=Msa1425770-mRNA-1 |
| tig0025890 | CDS | 23091 | 23267 | 23091 | ID=Msa1425770-mRNA-1:cds;Parent=Msa1425770-mRNA-1 |
| tig0025890 | CDS | 22387 | 22971 | 22387 | ID=Msa1425770-mRNA-1:cds;Parent=Msa1425770-mRNA-1 |
| tig0025890 | three_prime_UTR | 22039 | 22386 | 22039 | ID=Msa1425770-mRNA-1:three_prime_utr;Parent=Msa1425770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
