Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425830 | AFK43267.1 | 72.917 | 192 | 23 | 2 | 8 | 170 | 23 | 214 | 1.39e-86 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425830 | sp|Q9LIG0|Y3136_ARATH | 36.000 | 200 | 91 | 6 | 7 | 170 | 125 | 323 | 5.56e-30 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425830 | I3SSM5 | 72.917 | 192 | 23 | 2 | 8 | 170 | 23 | 214 | 6.62e-87 | 264 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218240 | Msa1425830 | 0.802220 | 6.221452e-49 | -8.615850e-47 |
| Msa1320300 | Msa1425830 | 0.803170 | 3.961661e-49 | -8.615850e-47 |
| Msa1016320 | Msa1425830 | 0.804434 | 2.164584e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425830 | MtrunA17_Chr0c05g0492121 | 72.917 | 192 | 23 | 2 | 8 | 170 | 123 | 314 | 1.74e-89 | 265 |
| Msa1425830 | MtrunA17_Chr2g0330991 | 38.500 | 200 | 85 | 7 | 7 | 170 | 121 | 318 | 8.18e-33 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425830 | AT3G21360.1 | 36.000 | 200 | 91 | 6 | 7 | 170 | 125 | 323 | 5.65e-31 | 115 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCTCTTTCACCTCTTC+TGG | 0.092999 | tig0025899:+69446 | None:intergenic |
| TTGTAGCAACCAGGACTTTC+TGG | 0.167838 | tig0025899:+68758 | None:intergenic |
| CAGAACAGAATCACCTTCTT+TGG | 0.243125 | tig0025899:+69548 | None:intergenic |
| GATAATTATGCTTTGCTTCA+TGG | 0.250081 | tig0025899:-68801 | Msa1425830:CDS |
| AAAGGGGTCTCTCCTCCTTC+AGG | 0.250885 | tig0025899:+69512 | None:intergenic |
| AGAGGGTGGGAGGATGCTTT+TGG | 0.299676 | tig0025899:-69359 | Msa1425830:CDS |
| TCATCTCTTTCACCTCTTCT+GGG | 0.326997 | tig0025899:+69447 | None:intergenic |
| TCTTTGGATATTCCTTAATC+TGG | 0.333466 | tig0025899:+69564 | None:intergenic |
| ATGCTTTGCTTCATGGTAGA+AGG | 0.335101 | tig0025899:-68794 | Msa1425830:CDS |
| GGACTTCAATAACCAGATTA+AGG | 0.343480 | tig0025899:-69576 | Msa1425830:CDS |
| ATGTGGTTTAACACAATTGT+AGG | 0.355722 | tig0025899:-68963 | Msa1425830:CDS |
| ACTCTGAAGCTTGGAACAAA+AGG | 0.391980 | tig0025899:+69494 | None:intergenic |
| TGTCACACTTATTTATATCA+TGG | 0.406870 | tig0025899:+68704 | None:intergenic |
| AAAGTATTTGAAGGAAGAAA+AGG | 0.408165 | tig0025899:-68993 | Msa1425830:CDS |
| ACAAATAATATGAAATTACT+TGG | 0.411353 | tig0025899:+68735 | None:intergenic |
| CTCAGCTTCCTTGGGATCTG+AGG | 0.424515 | tig0025899:+69334 | None:intergenic |
| ATTGTCTTTAGCCCACCATT+TGG | 0.441785 | tig0025899:+69038 | None:intergenic |
| AAGGGGTCTCTCCTCCTTCA+GGG | 0.441809 | tig0025899:+69513 | None:intergenic |
| CCCTTCCTCCCAGAAAGTCC+TGG | 0.442111 | tig0025899:-68767 | Msa1425830:CDS |
| TGTAGCAACCAGGACTTTCT+GGG | 0.445327 | tig0025899:+68759 | None:intergenic |
| AATTTAACAAAAGTATTTGA+AGG | 0.447996 | tig0025899:-69002 | Msa1425830:CDS |
| GACTTTCTGGGAGGAAGGGA+AGG | 0.463612 | tig0025899:+68771 | None:intergenic |
| CTCTGAAGCTTGGAACAAAA+GGG | 0.463626 | tig0025899:+69495 | None:intergenic |
| TCCCACCCTCTACCCTCTCA+TGG | 0.464722 | tig0025899:+69371 | None:intergenic |
| CTCTGTTCCATCTGCCATTG+TGG | 0.473480 | tig0025899:+68914 | None:intergenic |
| CTTTCTGTCACTCTGAAGCT+TGG | 0.474797 | tig0025899:+69485 | None:intergenic |
| GTCACACTTATTTATATCAT+GGG | 0.482575 | tig0025899:+68705 | None:intergenic |
| AACACAATTGTAGGCATGCA+TGG | 0.486233 | tig0025899:-68954 | Msa1425830:CDS |
| ATACAATTCAAGTGGGAGAA+AGG | 0.508427 | tig0025899:-68840 | Msa1425830:CDS |
| ACCAGGACTTTCTGGGAGGA+AGG | 0.513691 | tig0025899:+68766 | None:intergenic |
| TTCCAGCACATGTAGTGAAA+AGG | 0.514892 | tig0025899:-68890 | Msa1425830:CDS |
| GGTGGGCTAAAGACAATACT+TGG | 0.518323 | tig0025899:-69032 | Msa1425830:CDS |
| ATCCCAAGGAAGCTGAGAAA+AGG | 0.521646 | tig0025899:-69328 | Msa1425830:intron |
| AAGTATTTGAAGGAAGAAAA+GGG | 0.529816 | tig0025899:-68992 | Msa1425830:CDS |
| TCCATGAGAGGGTAGAGGGT+GGG | 0.537780 | tig0025899:-69372 | Msa1425830:CDS |
| AGGGGTCTCTCCTCCTTCAG+GGG | 0.539966 | tig0025899:+69514 | None:intergenic |
| AGCTCAGCCACAATGGCAGA+TGG | 0.554661 | tig0025899:-68921 | Msa1425830:CDS |
| GATTAAGGAATATCCAAAGA+AGG | 0.556164 | tig0025899:-69561 | Msa1425830:CDS |
| CCAGGACTTTCTGGGAGGAA+GGG | 0.563995 | tig0025899:+68767 | None:intergenic |
| AAGAGAGCATACAATTCAAG+TGG | 0.573174 | tig0025899:-68848 | Msa1425830:CDS |
| GAACCTCCATGAGAGGGTAG+AGG | 0.573274 | tig0025899:-69377 | Msa1425830:CDS |
| ATTACTTGGTTGTAGCAACC+AGG | 0.576965 | tig0025899:+68749 | None:intergenic |
| AACCTCCATGAGAGGGTAGA+GGG | 0.578712 | tig0025899:-69376 | Msa1425830:CDS |
| GTAGAGTGGCTTCCAAATGG+TGG | 0.581976 | tig0025899:-69050 | Msa1425830:intron |
| AGTGACAGAAAGGATGATTG+AGG | 0.583390 | tig0025899:-69474 | Msa1425830:CDS |
| CAAGCTTCAGAGTGACAGAA+AGG | 0.583716 | tig0025899:-69484 | Msa1425830:CDS |
| ATGAGAGGGTAGAGGGTGGG+AGG | 0.590468 | tig0025899:-69369 | Msa1425830:CDS |
| GGGGTCTCTCCTCCTTCAGG+GGG | 0.592857 | tig0025899:+69515 | None:intergenic |
| AATTGTAGGCATGCATGGAA+AGG | 0.595861 | tig0025899:-68949 | Msa1425830:CDS |
| TAGAGTGGCTTCCAAATGGT+GGG | 0.599294 | tig0025899:-69049 | Msa1425830:CDS |
| GATGTAGAGTGGCTTCCAAA+TGG | 0.616918 | tig0025899:-69053 | Msa1425830:intron |
| GGAGATTAGCTCAGCCACAA+TGG | 0.622194 | tig0025899:-68928 | Msa1425830:CDS |
| AGTGATAGAACCTCCATGAG+AGG | 0.627940 | tig0025899:-69384 | Msa1425830:intron |
| GTGATAGAACCTCCATGAGA+GGG | 0.628164 | tig0025899:-69383 | Msa1425830:intron |
| AGAGAGCATACAATTCAAGT+GGG | 0.633190 | tig0025899:-68847 | Msa1425830:CDS |
| CACCCTCTACCCTCTCATGG+AGG | 0.642840 | tig0025899:+69374 | None:intergenic |
| GCACATGTAGTGAAAAGGTG+TGG | 0.645188 | tig0025899:-68885 | Msa1425830:CDS |
| TCTGAAGCTTGGAACAAAAG+GGG | 0.650493 | tig0025899:+69496 | None:intergenic |
| CTCCATGAGAGGGTAGAGGG+TGG | 0.650709 | tig0025899:-69373 | Msa1425830:CDS |
| GATTGAGGAGTTCCCAGAAG+AGG | 0.665095 | tig0025899:-69459 | Msa1425830:intron |
| AGCAACCAGGACTTTCTGGG+AGG | 0.719163 | tig0025899:+68762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATTAGTTTATTTGAA+GGG | + | tig0025899:69006-69025 | None:intergenic | 10.0% |
| !!! | TAAATATTAGTTTATTTGAA+GGG | + | tig0025899:69006-69025 | None:intergenic | 10.0% |
| !!! | GTAAATATTAGTTTATTTGA+AGG | + | tig0025899:69007-69026 | None:intergenic | 15.0% |
| !!! | AATACTTTTGTTAAATTTCT+TGG | + | tig0025899:69292-69311 | None:intergenic | 15.0% |
| !!! | AATTTAACAAAAGTATTTGA+AGG | - | tig0025899:69295-69314 | Msa1425830:intron | 15.0% |
| !! | ACAAATAATATGAAATTACT+TGG | + | tig0025899:69565-69584 | None:intergenic | 15.0% |
| !!! | GTAAATATTAGTTTATTTGA+AGG | + | tig0025899:69007-69026 | None:intergenic | 15.0% |
| !!! | AATACTTTTGTTAAATTTCT+TGG | + | tig0025899:69292-69311 | None:intergenic | 15.0% |
| !!! | AATTTAACAAAAGTATTTGA+AGG | - | tig0025899:69295-69314 | Msa1425830:intron | 15.0% |
| !! | ACAAATAATATGAAATTACT+TGG | + | tig0025899:69565-69584 | None:intergenic | 15.0% |
| !! | GAATAAAATATGATATGTGT+CGG | + | tig0025899:69084-69103 | None:intergenic | 20.0% |
| !! | TTCAATTCAAATTCTATTAC+AGG | - | tig0025899:69203-69222 | Msa1425830:intron | 20.0% |
| !! | TCAATTCAAATTCTATTACA+GGG | - | tig0025899:69204-69223 | Msa1425830:intron | 20.0% |
| !! | GAATAAAATATGATATGTGT+CGG | + | tig0025899:69084-69103 | None:intergenic | 20.0% |
| !! | TTCAATTCAAATTCTATTAC+AGG | - | tig0025899:69203-69222 | Msa1425830:intron | 20.0% |
| !! | TCAATTCAAATTCTATTACA+GGG | - | tig0025899:69204-69223 | Msa1425830:intron | 20.0% |
| !!! | TTAACTTGTTAGTGTTTGAA+TGG | - | tig0025899:69138-69157 | Msa1425830:intron | 25.0% |
| !! | AAAGTATTTGAAGGAAGAAA+AGG | - | tig0025899:69304-69323 | Msa1425830:intron | 25.0% |
| ! | AAGTATTTGAAGGAAGAAAA+GGG | - | tig0025899:69305-69324 | Msa1425830:intron | 25.0% |
| !!! | TTAACTTGTTAGTGTTTGAA+TGG | - | tig0025899:69138-69157 | Msa1425830:intron | 25.0% |
| !! | AAAGTATTTGAAGGAAGAAA+AGG | - | tig0025899:69304-69323 | Msa1425830:intron | 25.0% |
| ! | AAGTATTTGAAGGAAGAAAA+GGG | - | tig0025899:69305-69324 | Msa1425830:intron | 25.0% |
| TCTTTGGATATTCCTTAATC+TGG | + | tig0025899:68736-68755 | None:intergenic | 30.0% | |
| GATTAAGGAATATCCAAAGA+AGG | - | tig0025899:68736-68755 | Msa1425830:CDS | 30.0% | |
| GAATGTAATATGACATGTGT+CGG | + | tig0025899:69186-69205 | None:intergenic | 30.0% | |
| ATGTGGTTTAACACAATTGT+AGG | - | tig0025899:69334-69353 | Msa1425830:CDS | 30.0% | |
| GATAATTATGCTTTGCTTCA+TGG | - | tig0025899:69496-69515 | Msa1425830:CDS | 30.0% | |
| TCTTTGGATATTCCTTAATC+TGG | + | tig0025899:68736-68755 | None:intergenic | 30.0% | |
| GATTAAGGAATATCCAAAGA+AGG | - | tig0025899:68736-68755 | Msa1425830:CDS | 30.0% | |
| GAATGTAATATGACATGTGT+CGG | + | tig0025899:69186-69205 | None:intergenic | 30.0% | |
| ATGTGGTTTAACACAATTGT+AGG | - | tig0025899:69334-69353 | Msa1425830:CDS | 30.0% | |
| GATAATTATGCTTTGCTTCA+TGG | - | tig0025899:69496-69515 | Msa1425830:CDS | 30.0% | |
| GGACTTCAATAACCAGATTA+AGG | - | tig0025899:68721-68740 | Msa1425830:CDS | 35.0% | |
| GAGGTTCTATCACTATTACT+AGG | + | tig0025899:68907-68926 | None:intergenic | 35.0% | |
| !! | TAGTATATTGCACCGACTAA+AGG | - | tig0025899:69043-69062 | Msa1425830:CDS | 35.0% |
| ! | AAGAGAGCATACAATTCAAG+TGG | - | tig0025899:69449-69468 | Msa1425830:intron | 35.0% |
| ! | AGAGAGCATACAATTCAAGT+GGG | - | tig0025899:69450-69469 | Msa1425830:intron | 35.0% |
| ATACAATTCAAGTGGGAGAA+AGG | - | tig0025899:69457-69476 | Msa1425830:intron | 35.0% | |
| GGACTTCAATAACCAGATTA+AGG | - | tig0025899:68721-68740 | Msa1425830:CDS | 35.0% | |
| GAGGTTCTATCACTATTACT+AGG | + | tig0025899:68907-68926 | None:intergenic | 35.0% | |
| !! | TAGTATATTGCACCGACTAA+AGG | - | tig0025899:69043-69062 | Msa1425830:CDS | 35.0% |
| ! | AAGAGAGCATACAATTCAAG+TGG | - | tig0025899:69449-69468 | Msa1425830:intron | 35.0% |
| ! | AGAGAGCATACAATTCAAGT+GGG | - | tig0025899:69450-69469 | Msa1425830:intron | 35.0% |
| ATACAATTCAAGTGGGAGAA+AGG | - | tig0025899:69457-69476 | Msa1425830:intron | 35.0% | |
| CAGAACAGAATCACCTTCTT+TGG | + | tig0025899:68752-68771 | None:intergenic | 40.0% | |
| ! | TCTGAAGCTTGGAACAAAAG+GGG | + | tig0025899:68804-68823 | None:intergenic | 40.0% |
| !! | CTCTGAAGCTTGGAACAAAA+GGG | + | tig0025899:68805-68824 | None:intergenic | 40.0% |
| !! | ACTCTGAAGCTTGGAACAAA+AGG | + | tig0025899:68806-68825 | None:intergenic | 40.0% |
| AGTGACAGAAAGGATGATTG+AGG | - | tig0025899:68823-68842 | Msa1425830:CDS | 40.0% | |
| TCATCTCTTTCACCTCTTCT+GGG | + | tig0025899:68853-68872 | None:intergenic | 40.0% | |
| TTCATCTCTTTCACCTCTTC+TGG | + | tig0025899:68854-68873 | None:intergenic | 40.0% | |
| AGGTGAAAGAGATGAAGAGA+AGG | - | tig0025899:68858-68877 | Msa1425830:CDS | 40.0% | |
| GGTGAAAGAGATGAAGAGAA+GGG | - | tig0025899:68859-68878 | Msa1425830:CDS | 40.0% | |
| GTGAAAGAGATGAAGAGAAG+GGG | - | tig0025899:68860-68879 | Msa1425830:CDS | 40.0% | |
| ! | TACCTTTTCTCAGCTTCCTT+GGG | + | tig0025899:68974-68993 | None:intergenic | 40.0% |
| ! | ATACCTTTTCTCAGCTTCCT+TGG | + | tig0025899:68975-68994 | None:intergenic | 40.0% |
| ATGGTGTCTGTGTTTATGTC+TGG | - | tig0025899:69157-69176 | Msa1425830:intron | 40.0% | |
| TATTACAGGGCAAAAGCTCT+AGG | - | tig0025899:69217-69236 | Msa1425830:intron | 40.0% | |
| ATTGTCTTTAGCCCACCATT+TGG | + | tig0025899:69262-69281 | None:intergenic | 40.0% | |
| GAAGAAAAGGGCGAAAAATG+TGG | - | tig0025899:69317-69336 | Msa1425830:intron | 40.0% | |
| AACACAATTGTAGGCATGCA+TGG | - | tig0025899:69343-69362 | Msa1425830:CDS | 40.0% | |
| AATTGTAGGCATGCATGGAA+AGG | - | tig0025899:69348-69367 | Msa1425830:CDS | 40.0% | |
| TTCCAGCACATGTAGTGAAA+AGG | - | tig0025899:69407-69426 | Msa1425830:intron | 40.0% | |
| ATGCTTTGCTTCATGGTAGA+AGG | - | tig0025899:69503-69522 | Msa1425830:CDS | 40.0% | |
| ATTACTTGGTTGTAGCAACC+AGG | + | tig0025899:69551-69570 | None:intergenic | 40.0% | |
| CAGAACAGAATCACCTTCTT+TGG | + | tig0025899:68752-68771 | None:intergenic | 40.0% | |
| ! | TCTGAAGCTTGGAACAAAAG+GGG | + | tig0025899:68804-68823 | None:intergenic | 40.0% |
| !! | CTCTGAAGCTTGGAACAAAA+GGG | + | tig0025899:68805-68824 | None:intergenic | 40.0% |
| !! | ACTCTGAAGCTTGGAACAAA+AGG | + | tig0025899:68806-68825 | None:intergenic | 40.0% |
| AGTGACAGAAAGGATGATTG+AGG | - | tig0025899:68823-68842 | Msa1425830:CDS | 40.0% | |
| TCATCTCTTTCACCTCTTCT+GGG | + | tig0025899:68853-68872 | None:intergenic | 40.0% | |
| TTCATCTCTTTCACCTCTTC+TGG | + | tig0025899:68854-68873 | None:intergenic | 40.0% | |
| AGGTGAAAGAGATGAAGAGA+AGG | - | tig0025899:68858-68877 | Msa1425830:CDS | 40.0% | |
| GGTGAAAGAGATGAAGAGAA+GGG | - | tig0025899:68859-68878 | Msa1425830:CDS | 40.0% | |
| GTGAAAGAGATGAAGAGAAG+GGG | - | tig0025899:68860-68879 | Msa1425830:CDS | 40.0% | |
| ! | TACCTTTTCTCAGCTTCCTT+GGG | + | tig0025899:68974-68993 | None:intergenic | 40.0% |
| ! | ATACCTTTTCTCAGCTTCCT+TGG | + | tig0025899:68975-68994 | None:intergenic | 40.0% |
| ATGGTGTCTGTGTTTATGTC+TGG | - | tig0025899:69157-69176 | Msa1425830:intron | 40.0% | |
| TATTACAGGGCAAAAGCTCT+AGG | - | tig0025899:69217-69236 | Msa1425830:intron | 40.0% | |
| ATTGTCTTTAGCCCACCATT+TGG | + | tig0025899:69262-69281 | None:intergenic | 40.0% | |
| GAAGAAAAGGGCGAAAAATG+TGG | - | tig0025899:69317-69336 | Msa1425830:intron | 40.0% | |
| AACACAATTGTAGGCATGCA+TGG | - | tig0025899:69343-69362 | Msa1425830:CDS | 40.0% | |
| AATTGTAGGCATGCATGGAA+AGG | - | tig0025899:69348-69367 | Msa1425830:CDS | 40.0% | |
| TTCCAGCACATGTAGTGAAA+AGG | - | tig0025899:69407-69426 | Msa1425830:intron | 40.0% | |
| ATGCTTTGCTTCATGGTAGA+AGG | - | tig0025899:69503-69522 | Msa1425830:CDS | 40.0% | |
| ATTACTTGGTTGTAGCAACC+AGG | + | tig0025899:69551-69570 | None:intergenic | 40.0% | |
| !! | CTTTCTGTCACTCTGAAGCT+TGG | + | tig0025899:68815-68834 | None:intergenic | 45.0% |
| CAAGCTTCAGAGTGACAGAA+AGG | - | tig0025899:68813-68832 | Msa1425830:CDS | 45.0% | |
| AGTGATAGAACCTCCATGAG+AGG | - | tig0025899:68913-68932 | Msa1425830:CDS | 45.0% | |
| GTGATAGAACCTCCATGAGA+GGG | - | tig0025899:68914-68933 | Msa1425830:CDS | 45.0% | |
| !!! | TTTTGGAACCTCAGATCCCA+AGG | - | tig0025899:68955-68974 | Msa1425830:CDS | 45.0% |
| ATCCCAAGGAAGCTGAGAAA+AGG | - | tig0025899:68969-68988 | Msa1425830:CDS | 45.0% | |
| TCAGACGCACTTCCTTTAGT+CGG | + | tig0025899:69058-69077 | None:intergenic | 45.0% | |
| ! | CTCTAGGAATGGATGTAGAG+TGG | - | tig0025899:69233-69252 | Msa1425830:intron | 45.0% |
| GATGTAGAGTGGCTTCCAAA+TGG | - | tig0025899:69244-69263 | Msa1425830:intron | 45.0% | |
| TAGAGTGGCTTCCAAATGGT+GGG | - | tig0025899:69248-69267 | Msa1425830:intron | 45.0% | |
| !! | GGTGGGCTAAAGACAATACT+TGG | - | tig0025899:69265-69284 | Msa1425830:intron | 45.0% |
| ! | CACCTTTTCACTACATGTGC+TGG | + | tig0025899:69412-69431 | None:intergenic | 45.0% |
| GCACATGTAGTGAAAAGGTG+TGG | - | tig0025899:69412-69431 | Msa1425830:intron | 45.0% | |
| TGTAGCAACCAGGACTTTCT+GGG | + | tig0025899:69541-69560 | None:intergenic | 45.0% | |
| TTGTAGCAACCAGGACTTTC+TGG | + | tig0025899:69542-69561 | None:intergenic | 45.0% | |
| !! | CTTTCTGTCACTCTGAAGCT+TGG | + | tig0025899:68815-68834 | None:intergenic | 45.0% |
| CAAGCTTCAGAGTGACAGAA+AGG | - | tig0025899:68813-68832 | Msa1425830:CDS | 45.0% | |
| AGTGATAGAACCTCCATGAG+AGG | - | tig0025899:68913-68932 | Msa1425830:CDS | 45.0% | |
| GTGATAGAACCTCCATGAGA+GGG | - | tig0025899:68914-68933 | Msa1425830:CDS | 45.0% | |
| !!! | TTTTGGAACCTCAGATCCCA+AGG | - | tig0025899:68955-68974 | Msa1425830:CDS | 45.0% |
| ATCCCAAGGAAGCTGAGAAA+AGG | - | tig0025899:68969-68988 | Msa1425830:CDS | 45.0% | |
| TCAGACGCACTTCCTTTAGT+CGG | + | tig0025899:69058-69077 | None:intergenic | 45.0% | |
| ! | CTCTAGGAATGGATGTAGAG+TGG | - | tig0025899:69233-69252 | Msa1425830:intron | 45.0% |
| GATGTAGAGTGGCTTCCAAA+TGG | - | tig0025899:69244-69263 | Msa1425830:intron | 45.0% | |
| TAGAGTGGCTTCCAAATGGT+GGG | - | tig0025899:69248-69267 | Msa1425830:intron | 45.0% | |
| !! | GGTGGGCTAAAGACAATACT+TGG | - | tig0025899:69265-69284 | Msa1425830:intron | 45.0% |
| ! | CACCTTTTCACTACATGTGC+TGG | + | tig0025899:69412-69431 | None:intergenic | 45.0% |
| GCACATGTAGTGAAAAGGTG+TGG | - | tig0025899:69412-69431 | Msa1425830:intron | 45.0% | |
| TGTAGCAACCAGGACTTTCT+GGG | + | tig0025899:69541-69560 | None:intergenic | 45.0% | |
| TTGTAGCAACCAGGACTTTC+TGG | + | tig0025899:69542-69561 | None:intergenic | 45.0% | |
| GATTGAGGAGTTCCCAGAAG+AGG | - | tig0025899:68838-68857 | Msa1425830:CDS | 50.0% | |
| AACCTCCATGAGAGGGTAGA+GGG | - | tig0025899:68921-68940 | Msa1425830:CDS | 50.0% | |
| !! | CAGGGCAAAAGCTCTAGGAA+TGG | - | tig0025899:69222-69241 | Msa1425830:intron | 50.0% |
| GTAGAGTGGCTTCCAAATGG+TGG | - | tig0025899:69247-69266 | Msa1425830:intron | 50.0% | |
| ! | GGAGATTAGCTCAGCCACAA+TGG | - | tig0025899:69369-69388 | Msa1425830:CDS | 50.0% |
| CTCTGTTCCATCTGCCATTG+TGG | + | tig0025899:69386-69405 | None:intergenic | 50.0% | |
| GATTGAGGAGTTCCCAGAAG+AGG | - | tig0025899:68838-68857 | Msa1425830:CDS | 50.0% | |
| AACCTCCATGAGAGGGTAGA+GGG | - | tig0025899:68921-68940 | Msa1425830:CDS | 50.0% | |
| !! | CAGGGCAAAAGCTCTAGGAA+TGG | - | tig0025899:69222-69241 | Msa1425830:intron | 50.0% |
| GTAGAGTGGCTTCCAAATGG+TGG | - | tig0025899:69247-69266 | Msa1425830:intron | 50.0% | |
| ! | GGAGATTAGCTCAGCCACAA+TGG | - | tig0025899:69369-69388 | Msa1425830:CDS | 50.0% |
| CTCTGTTCCATCTGCCATTG+TGG | + | tig0025899:69386-69405 | None:intergenic | 50.0% | |
| TGTGAGATACCTCCCCCTGA+AGG | - | tig0025899:68770-68789 | Msa1425830:CDS | 55.0% | |
| AAGGGGTCTCTCCTCCTTCA+GGG | + | tig0025899:68787-68806 | None:intergenic | 55.0% | |
| AAAGGGGTCTCTCCTCCTTC+AGG | + | tig0025899:68788-68807 | None:intergenic | 55.0% | |
| GAACCTCCATGAGAGGGTAG+AGG | - | tig0025899:68920-68939 | Msa1425830:CDS | 55.0% | |
| TCCATGAGAGGGTAGAGGGT+GGG | - | tig0025899:68925-68944 | Msa1425830:CDS | 55.0% | |
| ! | AGAGGGTGGGAGGATGCTTT+TGG | - | tig0025899:68938-68957 | Msa1425830:CDS | 55.0% |
| CTCAGCTTCCTTGGGATCTG+AGG | + | tig0025899:68966-68985 | None:intergenic | 55.0% | |
| AGCTCAGCCACAATGGCAGA+TGG | - | tig0025899:69376-69395 | Msa1425830:CDS | 55.0% | |
| ! | GACTTTCTGGGAGGAAGGGA+AGG | + | tig0025899:69529-69548 | None:intergenic | 55.0% |
| ! | CCAGGACTTTCTGGGAGGAA+GGG | + | tig0025899:69533-69552 | None:intergenic | 55.0% |
| ! | ACCAGGACTTTCTGGGAGGA+AGG | + | tig0025899:69534-69553 | None:intergenic | 55.0% |
| AGCAACCAGGACTTTCTGGG+AGG | + | tig0025899:69538-69557 | None:intergenic | 55.0% | |
| TGTGAGATACCTCCCCCTGA+AGG | - | tig0025899:68770-68789 | Msa1425830:CDS | 55.0% | |
| AAGGGGTCTCTCCTCCTTCA+GGG | + | tig0025899:68787-68806 | None:intergenic | 55.0% | |
| AAAGGGGTCTCTCCTCCTTC+AGG | + | tig0025899:68788-68807 | None:intergenic | 55.0% | |
| GAACCTCCATGAGAGGGTAG+AGG | - | tig0025899:68920-68939 | Msa1425830:CDS | 55.0% | |
| TCCATGAGAGGGTAGAGGGT+GGG | - | tig0025899:68925-68944 | Msa1425830:CDS | 55.0% | |
| ! | AGAGGGTGGGAGGATGCTTT+TGG | - | tig0025899:68938-68957 | Msa1425830:CDS | 55.0% |
| CTCAGCTTCCTTGGGATCTG+AGG | + | tig0025899:68966-68985 | None:intergenic | 55.0% | |
| AGCTCAGCCACAATGGCAGA+TGG | - | tig0025899:69376-69395 | Msa1425830:CDS | 55.0% | |
| ! | GACTTTCTGGGAGGAAGGGA+AGG | + | tig0025899:69529-69548 | None:intergenic | 55.0% |
| ! | CCAGGACTTTCTGGGAGGAA+GGG | + | tig0025899:69533-69552 | None:intergenic | 55.0% |
| ! | ACCAGGACTTTCTGGGAGGA+AGG | + | tig0025899:69534-69553 | None:intergenic | 55.0% |
| AGCAACCAGGACTTTCTGGG+AGG | + | tig0025899:69538-69557 | None:intergenic | 55.0% | |
| GAGATACCTCCCCCTGAAGG+AGG | - | tig0025899:68773-68792 | Msa1425830:CDS | 60.0% | |
| AGGGGTCTCTCCTCCTTCAG+GGG | + | tig0025899:68786-68805 | None:intergenic | 60.0% | |
| CACCCTCTACCCTCTCATGG+AGG | + | tig0025899:68926-68945 | None:intergenic | 60.0% | |
| CTCCATGAGAGGGTAGAGGG+TGG | - | tig0025899:68924-68943 | Msa1425830:CDS | 60.0% | |
| TCCCACCCTCTACCCTCTCA+TGG | + | tig0025899:68929-68948 | None:intergenic | 60.0% | |
| ATGAGAGGGTAGAGGGTGGG+AGG | - | tig0025899:68928-68947 | Msa1425830:CDS | 60.0% | |
| CCCTTCCTCCCAGAAAGTCC+TGG | - | tig0025899:69530-69549 | Msa1425830:CDS | 60.0% | |
| GAGATACCTCCCCCTGAAGG+AGG | - | tig0025899:68773-68792 | Msa1425830:CDS | 60.0% | |
| AGGGGTCTCTCCTCCTTCAG+GGG | + | tig0025899:68786-68805 | None:intergenic | 60.0% | |
| CACCCTCTACCCTCTCATGG+AGG | + | tig0025899:68926-68945 | None:intergenic | 60.0% | |
| CTCCATGAGAGGGTAGAGGG+TGG | - | tig0025899:68924-68943 | Msa1425830:CDS | 60.0% | |
| TCCCACCCTCTACCCTCTCA+TGG | + | tig0025899:68929-68948 | None:intergenic | 60.0% | |
| ATGAGAGGGTAGAGGGTGGG+AGG | - | tig0025899:68928-68947 | Msa1425830:CDS | 60.0% | |
| CCCTTCCTCCCAGAAAGTCC+TGG | - | tig0025899:69530-69549 | Msa1425830:CDS | 60.0% | |
| GTCTCTCCTCCTTCAGGGGG+AGG | + | tig0025899:68782-68801 | None:intergenic | 65.0% | |
| GGGGTCTCTCCTCCTTCAGG+GGG | + | tig0025899:68785-68804 | None:intergenic | 65.0% | |
| GTCTCTCCTCCTTCAGGGGG+AGG | + | tig0025899:68782-68801 | None:intergenic | 65.0% | |
| GGGGTCTCTCCTCCTTCAGG+GGG | + | tig0025899:68785-68804 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025899 | gene | 68716 | 69603 | 68716 | ID=Msa1425830;Name=Msa1425830 |
| tig0025899 | mRNA | 68716 | 69603 | 68716 | ID=Msa1425830-mRNA-1;Parent=Msa1425830;Name=Msa1425830-mRNA-1;_AED=0.14;_eAED=0.27;_QI=0|0|0|1|0|0.33|3|0|188 |
| tig0025899 | exon | 69460 | 69603 | 69460 | ID=Msa1425830-mRNA-1:exon:4490;Parent=Msa1425830-mRNA-1 |
| tig0025899 | exon | 69329 | 69398 | 69329 | ID=Msa1425830-mRNA-1:exon:4489;Parent=Msa1425830-mRNA-1 |
| tig0025899 | exon | 68716 | 69068 | 68716 | ID=Msa1425830-mRNA-1:exon:4488;Parent=Msa1425830-mRNA-1 |
| tig0025899 | CDS | 69460 | 69603 | 69460 | ID=Msa1425830-mRNA-1:cds;Parent=Msa1425830-mRNA-1 |
| tig0025899 | CDS | 69329 | 69398 | 69329 | ID=Msa1425830-mRNA-1:cds;Parent=Msa1425830-mRNA-1 |
| tig0025899 | CDS | 68716 | 69068 | 68716 | ID=Msa1425830-mRNA-1:cds;Parent=Msa1425830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
