AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428940 MtrunA17_Chr3g0144321 97.030 101 2 1 1 101 1 100 6.97e-68 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428940 AT2G33585.1 69.792 96 27 1 1 96 98 191 1.68e-46 147
Msa1428940 AT2G33585.2 74.545 55 14 0 1 55 98 152 5.56e-28 99.8

Find 48 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATATTTCCTGAAGGATA+TGG 0.208319 tig0026425:+4885 None:intergenic
ACAACAAAGACAAATCATTT+AGG 0.215755 tig0026425:-9058 Msa1428940:CDS
CAGGTTACTGGTTTGATATA+TGG 0.242969 tig0026425:-9089 Msa1428940:CDS
GAACCCTAGCTTATTATCTT+TGG 0.258975 tig0026425:-9311 Msa1428940:CDS
AAAATACTGTATTACTATTA+AGG 0.261649 tig0026425:-5012 Msa1428940:three_prime_UTR
GAGGAAGCAACCTCGCTTCT+TGG 0.300549 tig0026425:-9344 Msa1428940:CDS
ACTCTTCAATGGCGAGTAAC+TGG 0.320203 tig0026425:-9425 Msa1428940:exon
CAACAAAGACAAATCATTTA+GGG 0.367523 tig0026425:-9057 Msa1428940:CDS
GTTCTTGGCAGGAATCAAAA+TGG 0.377515 tig0026425:-5116 Msa1428940:intron
AGGAAGCAACCTCGCTTCTT+GGG 0.395335 tig0026425:-9343 Msa1428940:CDS
TCAAAATGGAAACAATCAAC+AGG 0.395695 tig0026425:-5102 Msa1428940:three_prime_UTR
GGTAACAACCCATATCCTTC+AGG 0.417391 tig0026425:-4894 Msa1428940:three_prime_UTR
ACATATTTCCTGAAGGATAT+GGG 0.422724 tig0026425:+4886 None:intergenic
ACGATTGAAGACTCAAACTC+TGG 0.451999 tig0026425:+9477 None:intergenic
GAGGAACGAACTTGAGGATC+AGG 0.455383 tig0026425:+9186 None:intergenic
AATTACACTATAACATTTGA+AGG 0.455809 tig0026425:+4941 None:intergenic
TAAGTAATAGTGGATTATAA+TGG 0.457737 tig0026425:+4840 None:intergenic
CGAACTTGAGGATCAGGAAC+AGG 0.471583 tig0026425:+9192 None:intergenic
CGAGTTTCAACATAGCGAAA+AGG 0.472893 tig0026425:+9219 None:intergenic
CTCGCTTCTTGGGTTGTCGC+CGG 0.477421 tig0026425:-9333 Msa1428940:CDS
TGATCCAAAGATAATAAGCT+AGG 0.483025 tig0026425:+9307 None:intergenic
CACTATAACATTTGAAGGGA+GGG 0.490517 tig0026425:+4946 None:intergenic
AAGATAATAAGCTAGGGTTC+CGG 0.497881 tig0026425:+9314 None:intergenic
TCGCGTTTGAGATCTTGATC+AGG 0.521692 tig0026425:+9282 None:intergenic
AACTATACTATACTCTTCAA+TGG 0.530667 tig0026425:-9436 Msa1428940:exon
ATTAATAACATATTTCCTGA+AGG 0.532087 tig0026425:+4879 None:intergenic
GTCGTTCGTGAACAATTCGA+TGG 0.543665 tig0026425:-9379 Msa1428940:CDS
TGTTGTTTAACGAAACGAAA+GGG 0.559678 tig0026425:-9555 Msa1428940:five_prime_UTR
AAAGTAGGGTGTGCCACACA+AGG 0.560704 tig0026425:+9601 None:intergenic
TAATAGTGGATTATAATGGC+AGG 0.575861 tig0026425:+4844 None:intergenic
GATCCAAAGATAATAAGCTA+GGG 0.581242 tig0026425:+9308 None:intergenic
TTCGTGAACAATTCGATGGG+TGG 0.584430 tig0026425:-9375 Msa1428940:CDS
GAAGAACACTCGGCAACGCA+AGG 0.595860 tig0026425:-9401 Msa1428940:CDS
TTGACACATTTACCCTTGTG+TGG 0.600283 tig0026425:-9614 None:intergenic
ATTACACTATAACATTTGAA+GGG 0.606449 tig0026425:+4942 None:intergenic
TCGTTCGTGAACAATTCGAT+GGG 0.609126 tig0026425:-9378 Msa1428940:CDS
GTTTAACGAAACGAAAGGGT+CGG 0.614155 tig0026425:-9551 Msa1428940:five_prime_UTR
AATTCGATGGGTGGTCTGAG+AGG 0.619195 tig0026425:-9366 Msa1428940:CDS
TCGATGGGTGGTCTGAGAGG+AGG 0.620565 tig0026425:-9363 Msa1428940:CDS
ACACTATAACATTTGAAGGG+AGG 0.623920 tig0026425:+4945 None:intergenic
TGTTTGACAGTATGTGTGCA+AGG 0.628493 tig0026425:+9508 None:intergenic
TTGTTGTTTAACGAAACGAA+AGG 0.637209 tig0026425:-9556 Msa1428940:five_prime_UTR
CGGCGACAACCCAAGAAGCG+AGG 0.662090 tig0026425:+9334 None:intergenic
ATAGCGAAAAGGATCATCAG+AGG 0.666816 tig0026425:+9230 None:intergenic
CAAAATGGAAACAATCAACA+GGG 0.671176 tig0026425:-5101 Msa1428940:three_prime_UTR
AAGTAGGGTGTGCCACACAA+GGG 0.685910 tig0026425:+9602 None:intergenic
GTTTGACAGTATGTGTGCAA+GGG 0.694466 tig0026425:+9509 None:intergenic
AGTAACTGGAGAAGAACACT+CGG 0.697006 tig0026425:-9411 Msa1428940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAAATATATTTTAATA+TGG + tig0026425:6464-6483 Msa1428950:intron 0.0%
!!! TAATTTTCAATTTTAATTTC+AGG - tig0026425:5343-5362 Msa1428940:intron 10.0%
!! AAATTACTTTATATATTGTA+CGG - tig0026425:5646-5665 Msa1428940:intron 10.0%
!!! ATATCTTACATTTTAAAAAT+AGG + tig0026425:5719-5738 None:intergenic 10.0%
!! ATAAGTCAAATATTAAATAA+TGG - tig0026425:6058-6077 Msa1428940:intron 10.0%
!!! CATATTTTCAATAAATTAAT+GGG + tig0026425:6546-6565 Msa1428950:intron 10.0%
!!! ACATATTTTCAATAAATTAA+TGG + tig0026425:6547-6566 Msa1428950:intron 10.0%
!!! ATTCATTTTTAAATTTTGTT+TGG + tig0026425:8762-8781 None:intergenic 10.0%
!! TAATAATAGAGAAAAAGAAA+AGG + tig0026425:5314-5333 None:intergenic 15.0%
!! ATAGATATTAACACAATATT+AGG - tig0026425:8664-8683 Msa1428940:intron 15.0%
!!! CCACTTTTATATTTAAAAAA+TGG + tig0026425:8953-8972 None:intergenic 15.0%
!!! CCATTTTTTAAATATAAAAG+TGG - tig0026425:8950-8969 Msa1428940:intron 15.0%
!! TACAAGAAAAATAAACATAT+TGG + tig0026425:9225-9244 None:intergenic 15.0%
!!! ATGTTTATTTTTCTTGTATT+TGG - tig0026425:9227-9246 Msa1428940:CDS 15.0%
!!! TGTTTATTTTTCTTGTATTT+GGG - tig0026425:9228-9247 Msa1428940:CDS 15.0%
!!! TTATATTTTTTTTGGATACA+GGG - tig0026425:9377-9396 Msa1428940:CDS 15.0%
!! AAAATACTGTATTACTATTA+AGG - tig0026425:9439-9458 Msa1428940:exon 15.0%
!! TTAGGGAAAAATATATTCAT+GGG + tig0026425:6500-6519 Msa1428950:intron 20.0%
!! ATTAGGGAAAAATATATTCA+TGG + tig0026425:6501-6520 Msa1428950:intron 20.0%
!!! AAGTTGATTTTAAAGTGAAA+GGG - tig0026425:6641-6660 Msa1428940:intron 20.0%
!!! GTTTAAAAAAATAGGGTTTT+CGG - tig0026425:6934-6953 Msa1428940:intron 20.0%
!! ATATTCATTGCATGTTTAAA+AGG + tig0026425:7257-7276 Msa1428960:intron 20.0%
!! AATTAACCTCTATATAACAT+AGG - tig0026425:7761-7780 Msa1428940:intron 20.0%
!!! TTTTAAATATAAAAGTGGCT+TGG - tig0026425:8955-8974 Msa1428940:intron 20.0%
!!! AGACGTTTTTAATATAAAAG+TGG - tig0026425:9083-9102 Msa1428940:CDS 20.0%
!!! TTTTTAATATAAAAGTGGCT+CGG - tig0026425:9088-9107 Msa1428940:CDS 20.0%
!!! CTTATATTTTTTTTGGATAC+AGG - tig0026425:9376-9395 Msa1428940:CDS 20.0%
!! ATTACACTATAACATTTGAA+GGG + tig0026425:9512-9531 None:intergenic 20.0%
!! AATTACACTATAACATTTGA+AGG + tig0026425:9513-9532 None:intergenic 20.0%
!! ATTAATAACATATTTCCTGA+AGG + tig0026425:9575-9594 None:intergenic 20.0%
! AACTATACTATACTCTTCAA+TGG - tig0026425:5015-5034 Msa1428940:three_prime_UTR 25.0%
! AAAAGAAAAGGAAGTAAAAG+TGG + tig0026425:5302-5321 None:intergenic 25.0%
!!! CAATTTTAATTTCAGGTTAC+TGG - tig0026425:5350-5369 Msa1428940:intron 25.0%
! ACAACAAAGACAAATCATTT+AGG - tig0026425:5393-5412 Msa1428940:intron 25.0%
! CAACAAAGACAAATCATTTA+GGG - tig0026425:5394-5413 Msa1428940:intron 25.0%
!!! TCAAGTTGGTGAAATAATAA+CGG + tig0026425:5518-5537 None:intergenic 25.0%
! GCAAAATAGTGAAATTTGAT+CGG - tig0026425:5580-5599 Msa1428940:intron 25.0%
! CAAAATAGTGAAATTTGATC+GGG - tig0026425:5581-5600 Msa1428940:intron 25.0%
! AAAATAGTGAAATTTGATCG+GGG - tig0026425:5582-5601 Msa1428940:intron 25.0%
! GTAAACCTAATTTACATTGT+TGG - tig0026425:5611-5630 Msa1428940:intron 25.0%
! ATACACCAACAATGTAAATT+AGG + tig0026425:5619-5638 None:intergenic 25.0%
! ATGTAAGATATTATAGACCT+AGG - tig0026425:5728-5747 Msa1428940:intron 25.0%
! TGTTATAATCACAAGTGTTT+AGG + tig0026425:5992-6011 Msa1428950:CDS 25.0%
! CTTTCCTAACTAATATGTAA+AGG + tig0026425:6099-6118 Msa1428950:CDS 25.0%
! TATTAGTTAGGAAAGCAAAA+CGG - tig0026425:6104-6123 Msa1428940:intron 25.0%
! ATAATCACAAGCAATTTAGT+CGG + tig0026425:6407-6426 Msa1428950:intron 25.0%
! TATTCAAAAGATCAAAGAAG+TGG - tig0026425:6582-6601 Msa1428940:intron 25.0%
!!! GAAGTTGATTTTAAAGTGAA+AGG - tig0026425:6640-6659 Msa1428940:intron 25.0%
!!! AGTTGATTTTAAAGTGAAAG+GGG - tig0026425:6642-6661 Msa1428940:intron 25.0%
! CTTTACTAGCTAATATGTAA+AGG + tig0026425:6865-6884 Msa1428960:intron 25.0%
! TATTAGCTAGTAAAGCAAAA+CGG - tig0026425:6870-6889 Msa1428940:intron 25.0%
! GGAACGTGTTTAAAAAAATA+GGG - tig0026425:6927-6946 Msa1428940:intron 25.0%
!!! AATAAATTAAAGGTATTCCG+CGG + tig0026425:7306-7325 Msa1428960:intron 25.0%
! ATAGAGGTTAATTATAACCT+TGG + tig0026425:7754-7773 Msa1428960:intron 25.0%
!! TGATTGTGAACATAAGATTT+TGG - tig0026425:7852-7871 Msa1428940:intron 25.0%
!! ATTCAACACTAATTGTTTCT+GGG - tig0026425:7939-7958 Msa1428940:intron 25.0%
! ATTTCCAATATCAGGATTAT+GGG + tig0026425:7994-8013 Msa1428960:intron 25.0%
!! ATCATTTGATTTCCAATATC+AGG + tig0026425:8002-8021 Msa1428960:intron 25.0%
!!! AGTGAACGTTTTTTTTCTAA+TGG + tig0026425:8035-8054 Msa1428960:intron 25.0%
! TTAGAAAAAAAACGTTCACT+TGG - tig0026425:8035-8054 Msa1428940:intron 25.0%
!!! TTGGTCTCTTTTGTTTAATT+GGG - tig0026425:8054-8073 Msa1428940:intron 25.0%
! ATTGAAGTTGAATTCATCAT+CGG + tig0026425:8217-8236 Msa1428960:CDS 25.0%
!!! AACTTCAATTTTGCTTTGAA+TGG - tig0026425:8228-8247 Msa1428940:intron 25.0%
!!! ACTTCAATTTTGCTTTGAAT+GGG - tig0026425:8229-8248 Msa1428940:intron 25.0%
!! AACAAGTTCTTCTAAAAGAA+AGG - tig0026425:8720-8739 Msa1428940:intron 25.0%
! GATACTTTATCGATATGTAT+AGG - tig0026425:9110-9129 Msa1428940:intron 25.0%
! TTTGTGATTGCTTGATTATT+TGG - tig0026425:9251-9270 Msa1428940:CDS 25.0%
! TTGTGATTGCTTGATTATTT+GGG - tig0026425:9252-9271 Msa1428940:CDS 25.0%
!! TTTTAATGCTCTGATATTAG+AGG - tig0026425:9275-9294 Msa1428940:CDS 25.0%
!! TTCATTTATGATGATGTTCT+TGG - tig0026425:9320-9339 Msa1428940:CDS 25.0%
!!! AGGGAGACTTATATTTTTTT+TGG - tig0026425:9369-9388 Msa1428940:CDS 25.0%
GCACACAAGTAAAAAAAGTA+GGG + tig0026425:4867-4886 None:intergenic 30.0%
AGCACACAAGTAAAAAAAGT+AGG + tig0026425:4868-4887 None:intergenic 30.0%
!!! ACTTTTTTTACTTGTGTGCT+AGG - tig0026425:4868-4887 Msa1428940:three_prime_UTR 30.0%
!! TTGTTGTTTAACGAAACGAA+AGG - tig0026425:4895-4914 Msa1428940:three_prime_UTR 30.0%
! TGTTGTTTAACGAAACGAAA+GGG - tig0026425:4896-4915 Msa1428940:three_prime_UTR 30.0%
GATCCAAAGATAATAAGCTA+GGG + tig0026425:5146-5165 None:intergenic 30.0%
TGATCCAAAGATAATAAGCT+AGG + tig0026425:5147-5166 None:intergenic 30.0%
AAAAGTGGTAAGTAAGAAAG+AGG + tig0026425:5287-5306 None:intergenic 30.0%
CAGCACATGATTAAGTAATT+AGG + tig0026425:5446-5465 None:intergenic 30.0%
TTAATTACAACGTGTCAAGT+TGG + tig0026425:5532-5551 None:intergenic 30.0%
AAATAGTGAAATTTGATCGG+GGG - tig0026425:5583-5602 Msa1428940:intron 30.0%
GTGTTTGGATATGCATAAAA+AGG - tig0026425:5754-5773 Msa1428940:intron 30.0%
! TTGAGTATCACAAATTTGCT+TGG - tig0026425:5781-5800 Msa1428940:intron 30.0%
GCAACAAACATAATTGTTAG+AGG - tig0026425:5911-5930 Msa1428940:intron 30.0%
! CTTATTGAAACACACTGTTT+TGG + tig0026425:6043-6062 Msa1428950:CDS 30.0%
CAGTCCTTTACATATTAGTT+AGG - tig0026425:6092-6111 Msa1428940:intron 30.0%
TAATCACAAGCAATTTAGTC+GGG + tig0026425:6406-6425 Msa1428950:intron 30.0%
ATATTCATGGGACGTTTAAA+AGG + tig0026425:6488-6507 Msa1428950:intron 30.0%
!! CGACATTTTGACATTGATTA+GGG + tig0026425:6517-6536 Msa1428950:intron 30.0%
GTCGTTGTTTATTATTTGAC+TGG + tig0026425:6828-6847 Msa1428960:CDS 30.0%
CGGAACGTGTTTAAAAAAAT+AGG - tig0026425:6926-6945 Msa1428940:intron 30.0%
! AATCCTCTTTGCAAAGTTTT+TGG - tig0026425:7381-7400 Msa1428940:intron 30.0%
! ATCCTCTTTGCAAAGTTTTT+GGG - tig0026425:7382-7401 Msa1428940:intron 30.0%
GAATTAGGTTTGAGTAATGA+TGG + tig0026425:7690-7709 Msa1428960:intron 30.0%
ATGCGAACTAATGAAGAATT+AGG + tig0026425:7705-7724 Msa1428960:intron 30.0%
ATCTTGCTCTATAACTAGTT+CGG - tig0026425:7821-7840 Msa1428940:intron 30.0%
GACTGAATTTCAATACGAAT+TGG - tig0026425:7916-7935 Msa1428940:intron 30.0%
GATTCAACACTAATTGTTTC+TGG - tig0026425:7938-7957 Msa1428940:intron 30.0%
!! TTCAACACTAATTGTTTCTG+GGG - tig0026425:7940-7959 Msa1428940:intron 30.0%
GATTTCCAATATCAGGATTA+TGG + tig0026425:7995-8014 Msa1428960:intron 30.0%
TGGAAATCAAATGATTGACT+TGG - tig0026425:8007-8026 Msa1428940:intron 30.0%
!! CTTGGTCTCTTTTGTTTAAT+TGG - tig0026425:8053-8072 Msa1428940:intron 30.0%
TTGAAGTTGAATTCATCATC+GGG + tig0026425:8216-8235 Msa1428960:CDS 30.0%
!!! TTTACAGCCATTTTTTGGTT+CGG + tig0026425:8264-8283 Msa1428960:CDS 30.0%
!!! CATGTTTTACAGCCATTTTT+TGG + tig0026425:8269-8288 Msa1428960:CDS 30.0%
!! CTTTTAGAAGAACTTGTTCA+AGG + tig0026425:8718-8737 None:intergenic 30.0%
!!! AAGAATCACGAGTTTTTTTC+TGG - tig0026425:8818-8837 Msa1428940:intron 30.0%
GGTATGATTCTAATACAGAT+AGG + tig0026425:8932-8951 None:intergenic 30.0%
TTGCATGTATGAATACTTCA+TGG - tig0026425:9058-9077 Msa1428940:CDS 30.0%
! GGTGAAGTATCAAAGAATAT+TGG - tig0026425:9131-9150 Msa1428940:intron 30.0%
AAAGAATATTGGTACCGTAT+TGG - tig0026425:9142-9161 Msa1428940:intron 30.0%
TAAAGGACACATATCCAATA+CGG + tig0026425:9159-9178 None:intergenic 30.0%
TATTGGATATGTGTCCTTTA+TGG - tig0026425:9159-9178 Msa1428940:intron 30.0%
ATATATGAATGCATGCTTCA+TGG - tig0026425:9199-9218 Msa1428940:CDS 30.0%
TCAAAATGGAAACAATCAAC+AGG - tig0026425:9349-9368 Msa1428940:CDS 30.0%
CAAAATGGAAACAATCAACA+GGG - tig0026425:9350-9369 Msa1428940:CDS 30.0%
!!! AGTATTTTGATTCCTGCTAA+GGG + tig0026425:9427-9446 None:intergenic 30.0%
ACATATTTCCTGAAGGATAT+GGG + tig0026425:9568-9587 None:intergenic 30.0%
AACATATTTCCTGAAGGATA+TGG + tig0026425:9569-9588 None:intergenic 30.0%
!!! TTTTTTACTTGTGTGCTAGG+AGG - tig0026425:4871-4890 Msa1428940:three_prime_UTR 35.0%
AAGATAATAAGCTAGGGTTC+CGG + tig0026425:5140-5159 None:intergenic 35.0%
GAACCCTAGCTTATTATCTT+TGG - tig0026425:5140-5159 Msa1428940:intron 35.0%
!! CAGGTTACTGGTTTGATATA+TGG - tig0026425:5362-5381 Msa1428940:intron 35.0%
CGGTGTACAATCATTATACT+CGG + tig0026425:5480-5499 None:intergenic 35.0%
! AACGGAGGTATATACATTGT+CGG + tig0026425:5500-5519 None:intergenic 35.0%
!! AGTTGGTGAAATAATAACGG+AGG + tig0026425:5515-5534 None:intergenic 35.0%
CTAGAAGTAATACTATGTCG+TGG - tig0026425:5558-5577 Msa1428940:intron 35.0%
TATAGACCTAGGATTGTGTT+TGG - tig0026425:5739-5758 Msa1428940:intron 35.0%
TTCGTTGTAAAACTAGAGCA+TGG - tig0026425:5823-5842 Msa1428940:intron 35.0%
! GTAAAACTAGAGCATGGTTT+TGG - tig0026425:5829-5848 Msa1428940:intron 35.0%
CAAGTGTTTAGGCTTCATTT+AGG + tig0026425:5981-6000 Msa1428950:CDS 35.0%
!!! AACACACTGTTTTGGAAAGA+CGG + tig0026425:6035-6054 Msa1428950:CDS 35.0%
TCCGCGTGTTTAAAAATGAT+AGG - tig0026425:6163-6182 Msa1428940:intron 35.0%
!! CCCTATCATTTTTAAACACG+CGG + tig0026425:6167-6186 Msa1428950:intron 35.0%
CCGCGTGTTTAAAAATGATA+GGG - tig0026425:6164-6183 Msa1428940:intron 35.0%
! CAAGATTACGATTTCTGAGA+AGG + tig0026425:6286-6305 Msa1428950:intron 35.0%
!! GCGACATTTTGACATTGATT+AGG + tig0026425:6518-6537 Msa1428950:intron 35.0%
! AGATCAAAGAAGTGGTTCTA+TGG - tig0026425:6590-6609 Msa1428940:intron 35.0%
!!! TTTTAAAGTGAAAGGGGTAG+AGG - tig0026425:6648-6667 Msa1428940:intron 35.0%
! TTTAAAGTGAAAGGGGTAGA+GGG - tig0026425:6649-6668 Msa1428940:intron 35.0%
!! TTGAAACACACTGTTTTGGA+AGG + tig0026425:6039-6058 Msa1428950:CDS 35.0%
TGAATCACAACACAATTCCA+TGG - tig0026425:7098-7117 Msa1428940:intron 35.0%
GAATCACAACACAATTCCAT+GGG - tig0026425:7099-7118 Msa1428940:intron 35.0%
AATCACAACACAATTCCATG+GGG - tig0026425:7100-7119 Msa1428940:intron 35.0%
TAATCACAAGCAATGTAGTC+AGG + tig0026425:7176-7195 Msa1428960:intron 35.0%
ATAAGAGAAAGACATGTCTC+TGG + tig0026425:7209-7228 Msa1428960:intron 35.0%
!! CGGCATTTTGACATTGATTA+AGG + tig0026425:7286-7305 Msa1428960:intron 35.0%
TAATCAATGTCAAAATGCCG+CGG - tig0026425:7286-7305 Msa1428940:intron 35.0%
AAACTTTGCAAAGAGGATTG+TGG + tig0026425:7380-7399 Msa1428960:intron 35.0%
! TCCTCTTTGCAAAGTTTTTG+GGG - tig0026425:7383-7402 Msa1428940:intron 35.0%
TCACTTGTGAGCTTTCTATT+TGG - tig0026425:7436-7455 Msa1428940:intron 35.0%
! CTTTCTATTTGGCTCGTATA+AGG - tig0026425:7447-7466 Msa1428940:intron 35.0%
AATGGTTGAATCTCCAAAGA+AGG + tig0026425:7601-7620 Msa1428960:intron 35.0%
!! GAATACCATGATGATGGAAT+TGG + tig0026425:7624-7643 Msa1428960:intron 35.0%
AAACTACTGGAATGGAAGAA+AGG + tig0026425:7659-7678 Msa1428960:intron 35.0%
TTTGAGTAATGATGGCAATG+AGG + tig0026425:7682-7701 Msa1428960:intron 35.0%
TTTCACAATTCTTCTCTCCA+AGG - tig0026425:7734-7753 Msa1428940:intron 35.0%
TGAGCTCCTATGTTATATAG+AGG + tig0026425:7770-7789 Msa1428960:intron 35.0%
! TGACGATGATGATGAAGATA+TGG + tig0026425:7802-7821 Msa1428960:intron 35.0%
TCTTGCTCTATAACTAGTTC+GGG - tig0026425:7822-7841 Msa1428940:intron 35.0%
!! TCAACACTAATTGTTTCTGG+GGG - tig0026425:7941-7960 Msa1428940:intron 35.0%
AGTACCCATAATCCTGATAT+TGG - tig0026425:7987-8006 Msa1428940:intron 35.0%
CAATTGAAGTCTCGTGTAAA+TGG + tig0026425:8109-8128 Msa1428960:intron 35.0%
CATTTACACGAGACTTCAAT+TGG - tig0026425:8107-8126 Msa1428940:intron 35.0%
! AAGATTTTACCTCAAAGCTC+AGG + tig0026425:8133-8152 Msa1428960:CDS 35.0%
TGAAGTTGAATTCATCATCG+GGG + tig0026425:8215-8234 Msa1428960:CDS 35.0%
!!! CCATTTTTTGGTTCGGATTT+AGG + tig0026425:8257-8276 Msa1428960:CDS 35.0%
CCTAAATCCGAACCAAAAAA+TGG - tig0026425:8254-8273 Msa1428940:intron 35.0%
!!! TAAAACATGCCATTTTTCGC+CGG - tig0026425:8280-8299 Msa1428940:intron 35.0%
TTTGTTGCATTGCATGATGA+GGG + tig0026425:8640-8659 None:intergenic 35.0%
GATACTCTATGGATATGTGT+GGG - tig0026425:8977-8996 Msa1428940:intron 35.0%
TCGAAGAATTGGTATCGTAT+TGG - tig0026425:9007-9026 Msa1428940:intron 35.0%
TGTCCTTTATGGATACATGA+AGG - tig0026425:9033-9052 Msa1428940:intron 35.0%
GTCCTTTATGGATACATGAA+GGG - tig0026425:9034-9053 Msa1428940:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG + tig0026425:9039-9058 None:intergenic 35.0%
TGTCCTTTATGGATACATGA+AGG - tig0026425:9033-9052 Msa1428940:intron 35.0%
GTCCTTTATGGATACATGAA+GGG - tig0026425:9034-9053 Msa1428940:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG + tig0026425:9039-9058 None:intergenic 35.0%
! TTTATGATGATGTTCTTGGC+AGG - tig0026425:9324-9343 Msa1428940:CDS 35.0%
!!! CAGTATTTTGATTCCTGCTA+AGG + tig0026425:9428-9447 None:intergenic 35.0%
CACTATAACATTTGAAGGGA+GGG + tig0026425:9508-9527 None:intergenic 35.0%
ACACTATAACATTTGAAGGG+AGG + tig0026425:9509-9528 None:intergenic 35.0%
!!! TGAGTTTTGAGAATGACTGT+TGG - tig0026425:9536-9555 Msa1428940:five_prime_UTR 35.0%
GTTTAACGAAACGAAAGGGT+CGG - tig0026425:4900-4919 Msa1428940:three_prime_UTR 40.0%
GTTTGACAGTATGTGTGCAA+GGG + tig0026425:4945-4964 None:intergenic 40.0%
TGTTTGACAGTATGTGTGCA+AGG + tig0026425:4946-4965 None:intergenic 40.0%
ACGATTGAAGACTCAAACTC+TGG + tig0026425:4977-4996 None:intergenic 40.0%
AGTAACTGGAGAAGAACACT+CGG - tig0026425:5040-5059 Msa1428940:three_prime_UTR 40.0%
TCGTTCGTGAACAATTCGAT+GGG - tig0026425:5073-5092 Msa1428940:three_prime_UTR 40.0%
ATAGCGAAAAGGATCATCAG+AGG + tig0026425:5224-5243 None:intergenic 40.0%
CGAGTTTCAACATAGCGAAA+AGG + tig0026425:5235-5254 None:intergenic 40.0%
AAGAAAGAGGAACGAACTTG+AGG + tig0026425:5274-5293 None:intergenic 40.0%
GCATATCCAAACACAATCCT+AGG + tig0026425:5748-5767 None:intergenic 40.0%
!!! AACTAGAGCATGGTTTTGGT+TGG - tig0026425:5833-5852 Msa1428940:intron 40.0%
!!! TGGTTTTGGTTGGATGCATT+TGG - tig0026425:5843-5862 Msa1428940:intron 40.0%
!!! GGTTTTGGTTGGATGCATTT+GGG - tig0026425:5844-5863 Msa1428940:intron 40.0%
! GTTTTCAGTTTCTCGAAACC+AGG - tig0026425:6186-6205 Msa1428940:intron 40.0%
TCTTGCTCGAAACGAACATA+AGG - tig0026425:6251-6270 Msa1428940:intron 40.0%
TTCAAGCAAGACCACCAAAA+GGG + tig0026425:6320-6339 Msa1428950:intron 40.0%
ATTCAAGCAAGACCACCAAA+AGG + tig0026425:6321-6340 Msa1428950:intron 40.0%
ATTCCATGGGGCTATATGAT+AGG - tig0026425:6350-6369 Msa1428940:intron 40.0%
! TGGTTCTATGGATGTTTGCA+AGG - tig0026425:6602-6621 Msa1428940:intron 40.0%
GGTTCTATGGATGTTTGCAA+GGG - tig0026425:6603-6622 Msa1428940:intron 40.0%
! CTGGTTGAAACACACTGTTT+TGG + tig0026425:6809-6828 Msa1428960:CDS 40.0%
TTGCAAAGCTCAACTCAAGT+CGG - tig0026425:6972-6991 Msa1428940:intron 40.0%
ATCACAACACAATTCCATGG+GGG - tig0026425:7101-7120 Msa1428940:intron 40.0%
ATTCCATGGGGGTAGATTAT+AGG - tig0026425:7112-7131 Msa1428940:intron 40.0%
TCCCCAAAAACTTTGCAAAG+AGG + tig0026425:7387-7406 Msa1428960:intron 40.0%
!! TCTTTGCAAAGTTTTTGGGG+AGG - tig0026425:7386-7405 Msa1428940:intron 40.0%
AGAAAGCTCACAAGTGAAGA+AGG + tig0026425:7433-7452 Msa1428960:intron 40.0%
TCGACACACATCATATTCTG+TGG + tig0026425:7497-7516 Msa1428960:intron 40.0%
ATATGATGTGTGTCGAAAGC+AGG - tig0026425:7501-7520 Msa1428940:intron 40.0%
TGGTCATCTGACAAGGAAAT+CGG + tig0026425:7536-7555 Msa1428960:intron 40.0%
AAGAGTTTGGTCATCTGACA+AGG + tig0026425:7543-7562 Msa1428960:intron 40.0%
GGACAGGAGATATAAGAGTT+TGG + tig0026425:7556-7575 Msa1428960:intron 40.0%
ACAGACAGAAACAGAGAAGT+TGG + tig0026425:7577-7596 Msa1428960:intron 40.0%
GTTTCTGTCTGTACCTTCTT+TGG - tig0026425:7585-7604 Msa1428940:intron 40.0%
!! CCATGATGATGGAATTGGAA+TGG + tig0026425:7619-7638 Msa1428960:intron 40.0%
CCATTCCAATTCCATCATCA+TGG - tig0026425:7616-7635 Msa1428940:intron 40.0%
! GTTGGTGAATACCATGATGA+TGG + tig0026425:7630-7649 Msa1428960:intron 40.0%
!! ATGGAAGAAAGGCATTGTGT+TGG + tig0026425:7648-7667 Msa1428960:intron 40.0%
CAATGAGGAAACTACTGGAA+TGG + tig0026425:7667-7686 Msa1428960:intron 40.0%
ACTCCAGAAACAGAAGAACA+CGG - tig0026425:7891-7910 Msa1428940:intron 40.0%
!! CAACACTAATTGTTTCTGGG+GGG - tig0026425:7942-7961 Msa1428940:intron 40.0%
! TTTAGGATTCCGGCGAAAAA+TGG + tig0026425:8292-8311 Msa1428960:CDS 40.0%
TTGTTGCATTGCATGATGAG+GGG + tig0026425:8639-8658 None:intergenic 40.0%
! GTTTGTTGCATTGCATGATG+AGG + tig0026425:8641-8660 None:intergenic 40.0%
TCTTTCAACGCATCTGAATG+AGG + tig0026425:8857-8876 None:intergenic 40.0%
! AGACAATACGGTTTGGACTT+TGG + tig0026425:8882-8901 None:intergenic 40.0%
CAACTTGAGACAATACGGTT+TGG + tig0026425:8889-8908 None:intergenic 40.0%
GAGTGCAACTTGAGACAATA+CGG + tig0026425:8894-8913 None:intergenic 40.0%
! AAAGTGGCTTGGATACTCTA+TGG - tig0026425:8966-8985 Msa1428940:intron 40.0%
GGATACTCTATGGATATGTG+TGG - tig0026425:8976-8995 Msa1428940:intron 40.0%
!! TGGGTGAAGTATCGAAGAAT+TGG - tig0026425:8996-9015 Msa1428940:intron 40.0%
CGTATTGGATGTGTCCTTTA+TGG - tig0026425:9022-9041 Msa1428940:intron 40.0%
GTTCTTGGCAGGAATCAAAA+TGG - tig0026425:9335-9354 Msa1428940:CDS 40.0%
ACTCTTCAATGGCGAGTAAC+TGG - tig0026425:5026-5045 Msa1428940:three_prime_UTR 45.0%
GTCGTTCGTGAACAATTCGA+TGG - tig0026425:5072-5091 Msa1428940:three_prime_UTR 45.0%
TTCGTGAACAATTCGATGGG+TGG - tig0026425:5076-5095 Msa1428940:three_prime_UTR 45.0%
! TCGCGTTTGAGATCTTGATC+AGG + tig0026425:5172-5191 None:intergenic 45.0%
! TGGTTGGATGCATTTGGGTT+TGG - tig0026425:5849-5868 Msa1428940:intron 45.0%
ACGGTGCGTTTACATTAGTG+AGG - tig0026425:6123-6142 Msa1428940:intron 45.0%
!! CAAACAGCACGTACTGACTT+GGG + tig0026425:6226-6245 Msa1428950:CDS 45.0%
!! ACAAACAGCACGTACTGACT+TGG + tig0026425:6227-6246 Msa1428950:CDS 45.0%
! TTGACCACGAAGTTCCCTTT+TGG - tig0026425:6303-6322 Msa1428940:intron 45.0%
TGAATTGCAGCACGATTCCA+TGG - tig0026425:6336-6355 Msa1428940:intron 45.0%
GAATTGCAGCACGATTCCAT+GGG - tig0026425:6337-6356 Msa1428940:intron 45.0%
AATTGCAGCACGATTCCATG+GGG - tig0026425:6338-6357 Msa1428940:intron 45.0%
CATCCTATCATATAGCCCCA+TGG + tig0026425:6356-6375 Msa1428950:intron 45.0%
CATGGGGCTATATGATAGGA+TGG - tig0026425:6354-6373 Msa1428940:intron 45.0%
AAAGGGGTAGAGGGAAAAGT+TGG - tig0026425:6658-6677 Msa1428940:intron 45.0%
!!! AACACACTGTTTTGGAAGGC+TGG + tig0026425:6801-6820 Msa1428960:CDS 45.0%
ACGGTGCGTTTAGATTAGTG+AGG - tig0026425:6889-6908 Msa1428940:intron 45.0%
! GTTTTCGGTTTCTCGAAACC+AGG - tig0026425:6949-6968 Msa1428940:intron 45.0%
!! TTGAGTTGAGCTTTGCAACC+TGG + tig0026425:6970-6989 Msa1428960:CDS 45.0%
TTCAAGCGAGAAGAGACGAA+CGG + tig0026425:7004-7023 Msa1428960:CDS 45.0%
CATCCTATAATCTACCCCCA+TGG + tig0026425:7118-7137 Msa1428960:intron 45.0%
CATGGGGGTAGATTATAGGA+TGG - tig0026425:7116-7135 Msa1428940:intron 45.0%
GTGCTAGCATAGTAGCATGT+AGG + tig0026425:7148-7167 Msa1428960:intron 45.0%
CACAAGCAATGTAGTCAGGA+TGG + tig0026425:7172-7191 Msa1428960:intron 45.0%
TTGCAAAGAGGATTGTGGCA+CGG + tig0026425:7375-7394 Msa1428960:intron 45.0%
!! TTGCAAAGTTTTTGGGGAGG+AGG - tig0026425:7389-7408 Msa1428940:intron 45.0%
CATATTCTGTGGTCTGAGAG+TGG + tig0026425:7486-7505 Msa1428960:intron 45.0%
CAGAAACAGAGAAGTTGGAC+AGG + tig0026425:7572-7591 Msa1428960:intron 45.0%
GATGGCAATGAGGAAACTAC+TGG + tig0026425:7672-7691 Msa1428960:intron 45.0%
CTCCAGAAACAGAAGAACAC+GGG - tig0026425:7892-7911 Msa1428940:intron 45.0%
TCCAGAAACAGAAGAACACG+GGG - tig0026425:7893-7912 Msa1428940:intron 45.0%
!! ACTAATTGTTTCTGGGGGGA+TGG - tig0026425:7946-7965 Msa1428940:intron 45.0%
!! CTAATTGTTTCTGGGGGGAT+GGG - tig0026425:7947-7966 Msa1428940:intron 45.0%
!! TAATTGTTTCTGGGGGGATG+GGG - tig0026425:7948-7967 Msa1428940:intron 45.0%
CTCATCCATTGTGATGCATG+AGG + tig0026425:8084-8103 Msa1428960:intron 45.0%
! TTCAATTGGCCTGAGCTTTG+AGG - tig0026425:8121-8140 Msa1428940:intron 45.0%
! TTTGCGGGTGTTTAGGATTC+CGG + tig0026425:8302-8321 Msa1428960:CDS 45.0%
TCCTAAACACCCGCAAACTT+CGG - tig0026425:8305-8324 Msa1428940:intron 45.0%
CAGGTCTGATTCTTTCTGTG+GGG + tig0026425:8369-8388 None:intergenic 45.0%
CCAGGTCTGATTCTTTCTGT+GGG + tig0026425:8370-8389 None:intergenic 45.0%
CCACAGAAAGAATCAGACCT+GGG - tig0026425:8368-8387 Msa1428940:intron 45.0%
CACAGAAAGAATCAGACCTG+GGG - tig0026425:8369-8388 Msa1428940:intron 45.0%
CGGGAATCCATCTTCAACAA+CGG + tig0026425:8478-8497 None:intergenic 45.0%
TAGAGGACCAGTCATCTTCA+CGG + tig0026425:8504-8523 None:intergenic 45.0%
! TGAAGATGACTGGTCCTCTA+TGG - tig0026425:8504-8523 Msa1428940:intron 45.0%
TTGACGAGTCATGGAGAATG+CGG + tig0026425:8564-8583 None:intergenic 45.0%
ACTGGGTAATTGACGAGTCA+TGG + tig0026425:8573-8592 None:intergenic 45.0%
GGAAGAAGTGATCACTCACT+GGG + tig0026425:8590-8609 None:intergenic 45.0%
! AATTTTCCGGTCAGTGGGAA+CGG + tig0026425:8613-8632 None:intergenic 45.0%
! TGATGAGGGGGTGAATTTTC+CGG + tig0026425:8626-8645 None:intergenic 45.0%
TGTTGCATTGCATGATGAGG+GGG + tig0026425:8638-8657 None:intergenic 45.0%
!! TGTTTTTGCTCTCCCTTAGC+AGG - tig0026425:9412-9431 Msa1428940:CDS 45.0%
GGTAACAACCCATATCCTTC+AGG - tig0026425:9557-9576 Msa1428940:five_prime_UTR 45.0%
!!! ATTAATATATTTTTTTAATG+TGG + tig0026425:7232-7251 Msa1428960:intron 5.0%
!!! ACATATTTTAAATAAATTAA+AGG + tig0026425:7316-7335 Msa1428960:intron 5.0%
AAGTAGGGTGTGCCACACAA+GGG + tig0026425:4852-4871 None:intergenic 50.0%
AAAGTAGGGTGTGCCACACA+AGG + tig0026425:4853-4872 None:intergenic 50.0%
AATTCGATGGGTGGTCTGAG+AGG - tig0026425:5085-5104 Msa1428940:three_prime_UTR 50.0%
AGGAAGCAACCTCGCTTCTT+GGG - tig0026425:5108-5127 Msa1428940:three_prime_UTR 50.0%
CGAACTTGAGGATCAGGAAC+AGG + tig0026425:5262-5281 None:intergenic 50.0%
GAGGAACGAACTTGAGGATC+AGG + tig0026425:5268-5287 None:intergenic 50.0%
! ACCACGAAGTTCCCTTTTGG+TGG - tig0026425:6306-6325 Msa1428940:intron 50.0%
ACCACCAAAAGGGAACTTCG+TGG + tig0026425:6310-6329 Msa1428950:intron 50.0%
TGTTTGCAAGGGAGAGAGAG+TGG - tig0026425:6614-6633 Msa1428940:intron 50.0%
GTTTGCAAGGGAGAGAGAGT+GGG - tig0026425:6615-6634 Msa1428940:intron 50.0%
TTTGCAAGGGAGAGAGAGTG+GGG - tig0026425:6616-6635 Msa1428940:intron 50.0%
TCCGCAAGTGAGAATGAGTG+AGG - tig0026425:6681-6700 Msa1428940:intron 50.0%
CCCTCACTCATTCTCACTTG+CGG + tig0026425:6685-6704 None:intergenic 50.0%
CCGCAAGTGAGAATGAGTGA+GGG - tig0026425:6682-6701 Msa1428940:intron 50.0%
CGCAAGTGAGAATGAGTGAG+GGG - tig0026425:6683-6702 Msa1428940:intron 50.0%
ACCGTGACGTCTCTGGTATA+TGG - tig0026425:6716-6735 Msa1428940:intron 50.0%
CCCATATACCAGAGACGTCA+CGG + tig0026425:6720-6739 None:intergenic 50.0%
CCGTGACGTCTCTGGTATAT+GGG - tig0026425:6717-6736 Msa1428940:intron 50.0%
ACGTCTCTGGTATATGGGAG+TGG - tig0026425:6722-6741 Msa1428940:intron 50.0%
CGTCTCTGGTATATGGGAGT+GGG - tig0026425:6723-6742 Msa1428940:intron 50.0%
!! GGTATATGGGAGTGGGTTGT+AGG - tig0026425:6730-6749 Msa1428940:intron 50.0%
GTGAGGAAATCCAAACGCAG+CGG - tig0026425:6140-6159 Msa1428940:intron 50.0%
TAAACACGTTCCGCTGCGTT+TGG + tig0026425:6919-6938 Msa1428960:intron 50.0%
TTGACCACGAAACTCCCTTC+CGG - tig0026425:7065-7084 Msa1428940:intron 50.0%
TGTGATTCAAGCAAGACCGC+CGG + tig0026425:7087-7106 Msa1428960:intron 50.0%
CTGACAAGGAAATCGGCATC+AGG + tig0026425:7529-7548 Msa1428960:intron 50.0%
CCAGAAACAGAAGAACACGG+GGG - tig0026425:7894-7913 Msa1428940:intron 50.0%
!! AATTGTTTCTGGGGGGATGG+GGG - tig0026425:7949-7968 Msa1428940:intron 50.0%
GTGCTCCTCATGCATCACAA+TGG - tig0026425:8076-8095 Msa1428940:intron 50.0%
CCTAAACACCCGCAAACTTC+GGG - tig0026425:8306-8325 Msa1428940:intron 50.0%
TTCTGCCGGAGAAGCAAAGT+CGG - tig0026425:8329-8348 Msa1428940:intron 50.0%
CCCACAGAAAGAATCAGACC+TGG - tig0026425:8367-8386 Msa1428940:intron 50.0%
CCCAGGTCTGATTCTTTCTG+TGG + tig0026425:8371-8390 None:intergenic 50.0%
TATGACTTTGCCGGCGTCTT+TGG + tig0026425:8428-8447 None:intergenic 50.0%
AAAGACGCCGGCAAAGTCAT+AGG - tig0026425:8427-8446 Msa1428940:intron 50.0%
ATGGACGCCTATGACTTTGC+CGG + tig0026425:8437-8456 None:intergenic 50.0%
! AGGCGTCCATCTTTTTGCCT+CGG - tig0026425:8447-8466 Msa1428940:intron 50.0%
GTGTCTCCGAGGCAAAAAGA+TGG + tig0026425:8456-8475 None:intergenic 50.0%
GGAGACACCGTTGTTGAAGA+TGG - tig0026425:8468-8487 Msa1428940:intron 50.0%
ACCAGTCATCTTCACGGACA+CGG + tig0026425:8498-8517 None:intergenic 50.0%
ACTGGTCCTCTATGGATCAC+TGG - tig0026425:8512-8531 Msa1428940:intron 50.0%
TCATCGCCAGTGATCCATAG+AGG + tig0026425:8521-8540 None:intergenic 50.0%
GAGTCATGGAGAATGCGGAT+GGG + tig0026425:8559-8578 None:intergenic 50.0%
GGGAAGAAGTGATCACTCAC+TGG + tig0026425:8591-8610 None:intergenic 50.0%
! ATTTTCCGGTCAGTGGGAAC+GGG + tig0026425:8612-8631 None:intergenic 50.0%
! GGGTGAATTTTCCGGTCAGT+GGG + tig0026425:8618-8637 None:intergenic 50.0%
GAAGAACACTCGGCAACGCA+AGG - tig0026425:5050-5069 Msa1428940:three_prime_UTR 55.0%
GAGGAAGCAACCTCGCTTCT+TGG - tig0026425:5107-5126 Msa1428940:three_prime_UTR 55.0%
!! CAGCACGTACTGACTTGGGT+TGG + tig0026425:6222-6241 Msa1428950:CDS 55.0%
!! ATGGGAGTGGGTTGTAGGAG+TGG - tig0026425:6735-6754 Msa1428940:intron 55.0%
TTCAAGCAAGACCGCCGGAA+GGG + tig0026425:7082-7101 Msa1428960:intron 55.0%
ATTCAAGCAAGACCGCCGGA+AGG + tig0026425:7083-7102 Msa1428960:intron 55.0%
TTCTGTGGTCTGAGAGTGGC+TGG + tig0026425:7482-7501 Msa1428960:intron 55.0%
CCCCCGTGTTCTTCTGTTTC+TGG + tig0026425:7897-7916 Msa1428960:intron 55.0%
ACAAGGAGCTGAGCCATCTC+CGG + tig0026425:8185-8204 Msa1428960:CDS 55.0%
ATCATCGGGGCTGAGCTACA+AGG + tig0026425:8202-8221 Msa1428960:CDS 55.0%
CCCGAAGTTTGCGGGTGTTT+AGG + tig0026425:8309-8328 Msa1428960:CDS 55.0%
! AGCAGCCGACTTTGCTTCTC+CGG + tig0026425:8337-8356 None:intergenic 55.0%
ACCTGGGGAATTTGTGCGTG+AGG - tig0026425:8384-8403 Msa1428940:intron 55.0%
ACCTCACGCACAAATTCCCC+AGG + tig0026425:8388-8407 None:intergenic 55.0%
TGGGGAATTTGTGCGTGAGG+TGG - tig0026425:8387-8406 Msa1428940:intron 55.0%
! GCGTCTTTGGAGATCCACCT+AGG + tig0026425:8415-8434 None:intergenic 55.0%
AGGTGGATCTCCAAAGACGC+CGG - tig0026425:8415-8434 Msa1428940:intron 55.0%
CTTCAACAACGGTGTCTCCG+AGG + tig0026425:8467-8486 None:intergenic 55.0%
CCAGTCATCTTCACGGACAC+GGG + tig0026425:8497-8516 None:intergenic 55.0%
CGAGTCATGGAGAATGCGGA+TGG + tig0026425:8560-8579 None:intergenic 55.0%
! TTTTCCGGTCAGTGGGAACG+GGG + tig0026425:8611-8630 None:intergenic 55.0%
! GGGGTGAATTTTCCGGTCAG+TGG + tig0026425:8619-8638 None:intergenic 55.0%
TCGATGGGTGGTCTGAGAGG+AGG - tig0026425:5088-5107 Msa1428940:three_prime_UTR 60.0%
! CTCGCTTCTTGGGTTGTCGC+CGG - tig0026425:5118-5137 Msa1428940:intron 60.0%
AACACGCGGAACGCTGCGTT+TGG + tig0026425:6153-6172 Msa1428950:intron 60.0%
! TGGGTTGGACTTCTGCGACC+TGG + tig0026425:6207-6226 Msa1428950:intron 60.0%
TTGCGTGACCGTGACGTCTC+TGG - tig0026425:6709-6728 Msa1428940:intron 60.0%
ACCACGAAACTCCCTTCCGG+CGG - tig0026425:7068-7087 Msa1428940:intron 60.0%
CCAGCGGGTCAGTGATGACA+TGG + tig0026425:8162-8181 Msa1428960:CDS 60.0%
CCATGTCATCACTGACCCGC+TGG - tig0026425:8159-8178 Msa1428940:intron 60.0%
CGGCAGAACCCGAAGTTTGC+GGG + tig0026425:8317-8336 Msa1428960:CDS 60.0%
CCGGCAGAACCCGAAGTTTG+CGG + tig0026425:8318-8337 None:intergenic 60.0%
! CCGCAAACTTCGGGTTCTGC+CGG - tig0026425:8315-8334 Msa1428940:intron 60.0%
TTGTGCGTGAGGTGGCTCCT+AGG - tig0026425:8395-8414 Msa1428940:intron 60.0%
CCCGTGTCCGTGAAGATGAC+TGG - tig0026425:8494-8513 Msa1428940:intron 60.0%
TCTTCCCCGTTCCCACTGAC+CGG - tig0026425:8604-8623 Msa1428940:intron 60.0%
CGGCGACAACCCAAGAAGCG+AGG + tig0026425:5120-5139 None:intergenic 65.0%
ACCGCCGGAAGGGAGTTTCG+TGG + tig0026425:7072-7091 Msa1428960:CDS 65.0%
GTCATCACTGACCCGCTGGC+CGG - tig0026425:8163-8182 Msa1428940:intron 65.0%
TGCGTGAGGTGGCTCCTAGG+TGG - tig0026425:8398-8417 Msa1428940:intron 65.0%
ACTGACCCGCTGGCCGGAGA+TGG - tig0026425:8169-8188 Msa1428940:intron 70.0%
CTGAGCCATCTCCGGCCAGC+GGG + tig0026425:8177-8196 Msa1428960:CDS 70.0%
GCTGAGCCATCTCCGGCCAG+CGG + tig0026425:8178-8197 Msa1428960:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0026425 gene 4849 9624 4849 ID=Msa1428940;Name=Msa1428940
tig0026425 mRNA 4849 9624 4849 ID=Msa1428940-mRNA-1;Parent=Msa1428940;Name=Msa1428940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=185|1|1|1|0.5|0.33|3|282|101
tig0026425 exon 4849 5127 4849 ID=Msa1428940-mRNA-1:exon:6264;Parent=Msa1428940-mRNA-1
tig0026425 exon 9043 9108 9043 ID=Msa1428940-mRNA-1:exon:6263;Parent=Msa1428940-mRNA-1
tig0026425 exon 9197 9624 9197 ID=Msa1428940-mRNA-1:exon:6262;Parent=Msa1428940-mRNA-1
tig0026425 five_prime_UTR 9440 9624 9440 ID=Msa1428940-mRNA-1:five_prime_utr;Parent=Msa1428940-mRNA-1
tig0026425 CDS 9197 9439 9197 ID=Msa1428940-mRNA-1:cds;Parent=Msa1428940-mRNA-1
tig0026425 CDS 9046 9108 9046 ID=Msa1428940-mRNA-1:cds;Parent=Msa1428940-mRNA-1
tig0026425 three_prime_UTR 9043 9045 9043 ID=Msa1428940-mRNA-1:three_prime_utr;Parent=Msa1428940-mRNA-1
tig0026425 three_prime_UTR 4849 5127 4849 ID=Msa1428940-mRNA-1:three_prime_utr;Parent=Msa1428940-mRNA-1
Gene Sequence

>Msa1428940

ATGGCGAGTAACTGGAGAAGAACACTCGGCAACGCAAGGTCGTTCGTGAACAATTCGATGGGTGGTCTGAGAGGAGGAAGCAACCTCGCTTCTTGGGTTGTCGCCGGAACCCTAGCTTATTATCTTTGGATCAAACCTGATCAAGATCTCAAACGCGAACAACAAGCTAAAGCTGCTATTGCTGCTTCCTCTGATGATCCTTTTCGCTATGTTGAAACTCGAAAACCTGTTCCTGATCCTCAAGTTACTGGTTTGATATATGGAAACAACAACAACAAAGACAAATCATTTAGGGCAGATGATTAG
Protein sequence

>Msa1428940

MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQQAKAAIAASSDDPFRYVETRKPVPDPQVTGLIYGNNNNKDKSFRADD*