AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166750 MtrunA17_Chr1g0181231 92.969 128 9 0 1 128 1 128 1.40e-83 245
Msa0166750 MtrunA17_Chr1g0181281 100.000 112 0 0 126 237 1 112 1.10e-74 221
Msa0166750 MtrunA17_Chr7g0264091 80.374 107 21 0 130 236 3 109 4.57e-53 167
Msa0166750 MtrunA17_Chr7g0215731 58.095 105 44 0 132 236 131 235 1.33e-36 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166750 AT3G01390.4 74.766 107 27 0 130 236 3 109 2.64e-40 134
Msa0166750 AT3G01390.2 74.766 107 27 0 130 236 3 109 2.64e-40 134
Msa0166750 AT3G01390.1 74.766 107 27 0 130 236 3 109 2.64e-40 134
Msa0166750 AT3G01390.3 74.766 107 27 0 130 236 3 109 2.64e-40 134
Msa0166750 AT4G23710.1 67.327 101 33 0 135 235 4 104 3.10e-38 129
Msa0166750 AT4G25950.1 56.604 106 44 1 130 235 3 106 5.35e-32 113
Msa0166750 AT2G37195.1 51.852 108 51 1 21 128 22 128 5.62e-31 111
Msa0166750 AT2G37195.2 51.852 108 51 1 21 128 32 138 7.89e-31 111
Msa0166750 AT4G25950.2 65.079 63 22 0 130 192 3 65 1.02e-18 78.2

Find 75 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCACAATCAACATAATTT+AGG 0.205551 1_4:+48321813 None:intergenic
TGCTGTTTATTTCAGACTTT+GGG 0.230009 1_4:-48327686 Msa0166750:CDS
TTTGTAGTATTGCAAATTTA+TGG 0.242937 1_4:+48326117 None:intergenic
GATCAAATAGAATGAAATTC+AGG 0.262717 1_4:+48321498 None:intergenic
GTTAATACCAGGAGCATCTT+TGG 0.296511 1_4:+48326139 None:intergenic
ACAGTTTGATATTGCTAATA+GGG 0.305827 1_4:-48326554 Msa0166750:CDS
GACAGTTTGATATTGCTAAT+AGG 0.308680 1_4:-48326555 Msa0166750:CDS
AAGATCAACGTTAGTGGGTT+TGG 0.327165 1_4:-48327731 Msa0166750:CDS
TAGGGTGAATGGGTGCTTAA+AGG 0.333923 1_4:-48326479 Msa0166750:CDS
ATAACGAGAGGGGCTTGTTT+AGG 0.344214 1_4:+48321583 None:intergenic
ATAGAATGAAATTCAGGGTT+TGG 0.344304 1_4:+48321504 None:intergenic
TCACAGTTGTTACATGCTTA+AGG 0.347547 1_4:+48321881 None:intergenic
TTGCTGTTTATTTCAGACTT+TGG 0.349606 1_4:-48327687 Msa0166750:CDS
ACCACAATCAACATAATTTA+GGG 0.351494 1_4:+48321814 None:intergenic
ATACAGAGTAGCGGTGATTC+TGG 0.360489 1_4:-48322000 Msa0166750:intron
GAAAAGAAGATCAACGTTAG+TGG 0.411060 1_4:-48327737 Msa0166750:CDS
AGCCAAAGAAGAGGCTGAAA+AGG 0.415151 1_4:-48322174 Msa0166750:CDS
AAGGAGGTGGATAGGGTGAA+TGG 0.422556 1_4:-48326490 Msa0166750:CDS
TGAGTGAAGACTAAAATGTT+AGG 0.423146 1_4:-48321616 Msa0166750:three_prime_UTR
TCCTTGACCCCTGTTGGATG+TGG 0.426476 1_4:+48324372 None:intergenic
GTATGATAAGGAGGTGGATA+GGG 0.427663 1_4:-48326497 Msa0166750:CDS
GAATGGCATCCACATCCAAC+AGG 0.432782 1_4:-48324381 Msa0166750:CDS
AATTCCTCCTTGACCCCTGT+TGG 0.435539 1_4:+48324366 None:intergenic
AGAAGAAGAATCAAATTGAA+AGG 0.451886 1_4:-48327773 Msa0166750:five_prime_UTR
TAAATTTGCAATACTACAAA+AGG 0.456708 1_4:-48326114 Msa0166750:intron
GAAGAAGAATCAAATTGAAA+GGG 0.464002 1_4:-48327772 Msa0166750:five_prime_UTR
AGTATGATAAGGAGGTGGAT+AGG 0.469594 1_4:-48326498 Msa0166750:CDS
TGAAATTCAGGGTTTGGAAA+GGG 0.470722 1_4:+48321510 None:intergenic
TTATTTCTTAATGTAAGTAC+AGG 0.471378 1_4:-48321564 Msa0166750:three_prime_UTR
AAAAGGAGATTGCTGCATAC+CGG 0.478243 1_4:-48322157 Msa0166750:CDS
ATCAAATAGAATGAAATTCA+GGG 0.490044 1_4:+48321499 None:intergenic
AGGAACCTTTGATGATTTGT+TGG 0.492255 1_4:-48321852 Msa0166750:three_prime_UTR
GAATGCAATCTTACTTGAAA+GGG 0.497392 1_4:-48325724 Msa0166750:CDS
GTGGAGGCTAAAGTATGATA+AGG 0.498733 1_4:-48326509 Msa0166750:CDS
AGAATGCAATCTTACTTGAA+AGG 0.506970 1_4:-48325725 Msa0166750:CDS
AGAATCAAATTGAAAGGGAA+TGG 0.508374 1_4:-48327767 Msa0166750:exon
TCGATGATTCTGAGCTCATA+AGG 0.511176 1_4:-48327642 Msa0166750:intron
AGGAGGTGGATAGGGTGAAT+GGG 0.514681 1_4:-48326489 Msa0166750:CDS
CCCCTAAATTATGTTGATTG+TGG 0.515533 1_4:-48321815 Msa0166750:three_prime_UTR
AGGAGGAATTCAGCAGTTGT+TGG 0.519580 1_4:-48324353 Msa0166750:CDS
AAAAGAAGATCAACGTTAGT+GGG 0.526220 1_4:-48327736 Msa0166750:CDS
ATGAAATTCAGGGTTTGGAA+AGG 0.535178 1_4:+48321509 None:intergenic
AAAGGAGATTGCTGCATACC+GGG 0.538412 1_4:-48322156 Msa0166750:CDS
TTTCTTAATGTAAGTACAGG+AGG 0.543077 1_4:-48321561 Msa0166750:three_prime_UTR
GAAATTCAGGGTTTGGAAAG+GGG 0.543481 1_4:+48321511 None:intergenic
TCCACATCCAACAGGGGTCA+AGG 0.545599 1_4:-48324373 Msa0166750:CDS
TGCAATCTTACTTGAAAGGG+TGG 0.548429 1_4:-48325721 Msa0166750:CDS
TACATTAAGAAATAACGAGA+GGG 0.549764 1_4:+48321572 None:intergenic
CAGATAGCCAAAGATGCTCC+TGG 0.550020 1_4:-48326146 Msa0166750:CDS
TATTGCTAATAGGGAGGCAA+TGG 0.551574 1_4:-48326545 Msa0166750:CDS
TGCATACCGGGCTAAGCTTG+AGG 0.552923 1_4:-48322144 Msa0166750:CDS
TGTTACATGCTTAAGGAGCA+TGG 0.571889 1_4:+48321888 None:intergenic
GCTAAAGTATGATAAGGAGG+TGG 0.572359 1_4:-48326503 Msa0166750:CDS
GAGGCTAAAGTATGATAAGG+AGG 0.580238 1_4:-48326506 Msa0166750:CDS
ACTCGGCCTCAAGCTTAGCC+CGG 0.584871 1_4:+48322138 None:intergenic
GCAAATTTATGGTTAATACC+AGG 0.588657 1_4:+48326128 None:intergenic
CTGCACCAACAAATCATCAA+AGG 0.605516 1_4:+48321847 None:intergenic
ATTAAAACGACAGCTTGAAG+AGG 0.605851 1_4:-48325694 Msa0166750:CDS
CGAGTTTCAAAAGAAAGTGT+CGG 0.626015 1_4:-48322120 Msa0166750:CDS
TTCCTATGAATACAGAGTAG+CGG 0.626460 1_4:-48322009 Msa0166750:intron
GTTTGATATTGCTAATAGGG+AGG 0.640077 1_4:-48326551 Msa0166750:CDS
TATTTGAATACATCGCAGCA+AGG 0.647005 1_4:+48321727 None:intergenic
GTTGAAACAAGCCAAAGAAG+AGG 0.654824 1_4:-48322183 Msa0166750:CDS
GTGCTTAAAGGAACTTCAAG+TGG 0.655527 1_4:-48326467 Msa0166750:intron
TGGATGAATCTGCTGAGTGG+AGG 0.660472 1_4:-48326525 Msa0166750:CDS
CCACAATCAACATAATTTAG+GGG 0.675532 1_4:+48321815 None:intergenic
AATCCATCACCTGAAAACAG+AGG 0.680056 1_4:-48321938 Msa0166750:CDS
ACATTAAGAAATAACGAGAG+GGG 0.681614 1_4:+48321573 None:intergenic
CAATGGATGAATCTGCTGAG+TGG 0.681919 1_4:-48326528 Msa0166750:CDS
TTACATTAAGAAATAACGAG+AGG 0.682812 1_4:+48321571 None:intergenic
AATGGCATCCACATCCAACA+GGG 0.688516 1_4:-48324380 Msa0166750:CDS
CAGCTGAACAAGAAGCACAA+CGG 0.700252 1_4:-48324330 Msa0166750:CDS
ACATCCAACAGGGGTCAAGG+AGG 0.701671 1_4:-48324370 Msa0166750:CDS
GATTTGTTGGTGCAGCTGAG+CGG 0.715099 1_4:-48321839 Msa0166750:three_prime_UTR
ATGGCATCCACATCCAACAG+GGG 0.715900 1_4:-48324379 Msa0166750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTAATTTTTAAAATTT+GGG + chr1_4:48323380-48323399 None:intergenic 0.0%
!!! TAAATTTAATTTTTAAAATT+TGG + chr1_4:48323381-48323400 None:intergenic 0.0%
!!! TTGAATTTAACTAGATTTTT+CGG + chr1_4:48321973-48321992 None:intergenic 15.0%
!!! ATTTTTTTTTTTTTTTGGAG+AGG - chr1_4:48322320-48322339 Msa0166750:intron 15.0%
!!! TTTTTTTTTTTTTTTGGAGA+GGG - chr1_4:48322321-48322340 Msa0166750:intron 15.0%
!! GAAAAACACATAATATTAAA+GGG + chr1_4:48322387-48322406 None:intergenic 15.0%
!! AGAAAAACACATAATATTAA+AGG + chr1_4:48322388-48322407 None:intergenic 15.0%
!!! AATTTTACCCTTAAAAAAAT+TGG - chr1_4:48323814-48323833 Msa0166750:intron 15.0%
!!! AGTAAAACCAATTTTTTTAA+GGG + chr1_4:48323824-48323843 None:intergenic 15.0%
!!! AAGTAAAACCAATTTTTTTA+AGG + chr1_4:48323825-48323844 None:intergenic 15.0%
!! AGATACACAAAATAAATATT+CGG + chr1_4:48324781-48324800 None:intergenic 15.0%
!! ACAATAATAGTATAATAACA+TGG - chr1_4:48326395-48326414 Msa0166750:intron 15.0%
!! TAAAGTTACAATATATAAAG+TGG - chr1_4:48326588-48326607 Msa0166750:intron 15.0%
!! AAAGTTACAATATATAAAGT+GGG - chr1_4:48326589-48326608 Msa0166750:intron 15.0%
!!! TTTTAATTCTACATCAAATA+AGG - chr1_4:48326618-48326637 Msa0166750:intron 15.0%
!! TTTAATTCTACATCAAATAA+GGG - chr1_4:48326619-48326638 Msa0166750:intron 15.0%
!!! ATTTAGAACTTGATTTTGTT+AGG - chr1_4:48322249-48322268 Msa0166750:intron 20.0%
!!! AGTTCTAAATGTAATCAAAA+TGG + chr1_4:48322278-48322297 None:intergenic 20.0%
!!! ACATTTAGAACTTATTTTGA+TGG - chr1_4:48322286-48322305 Msa0166750:intron 20.0%
!!! CATTTAGAACTTATTTTGAT+GGG - chr1_4:48322287-48322306 Msa0166750:intron 20.0%
!!! TTTTTTTTTTTTTTGGAGAG+GGG - chr1_4:48322322-48322341 Msa0166750:intron 20.0%
!! TGAGTATTTATATATCTTGT+TGG - chr1_4:48322413-48322432 Msa0166750:intron 20.0%
!!! AATTTTCTTAAATTAGTCAC+TGG - chr1_4:48322576-48322595 Msa0166750:intron 20.0%
!! TTATAATCTATAGTAAACGA+TGG + chr1_4:48322684-48322703 None:intergenic 20.0%
!! TATTTGTACCAAGATAAAAT+TGG - chr1_4:48323001-48323020 Msa0166750:intron 20.0%
!! TTTGTAGTATTGCAAATTTA+TGG + chr1_4:48323181-48323200 None:intergenic 20.0%
!! TAAATTTGCAATACTACAAA+AGG - chr1_4:48323181-48323200 Msa0166750:intron 20.0%
!! AACAAGGATAAAATTGTTAA+AGG - chr1_4:48323291-48323310 Msa0166750:intron 20.0%
!!! ATTTTCTACCATTTTGATTT+TGG - chr1_4:48323457-48323476 Msa0166750:intron 20.0%
!!! ATTTTGGTGGAAATTATTTT+TGG - chr1_4:48323473-48323492 Msa0166750:intron 20.0%
!!! AATTATTTTTGGCATTCTTT+TGG - chr1_4:48323484-48323503 Msa0166750:intron 20.0%
!! AGATGATTAATTCAATTATG+TGG - chr1_4:48324331-48324350 Msa0166750:CDS 20.0%
!! TTTCAGTGAATTAGAATATA+TGG - chr1_4:48324810-48324829 Msa0166750:intron 20.0%
!!! TTTTTCATAAACTATTGTAG+AGG + chr1_4:48325350-48325369 None:intergenic 20.0%
!! AGTTTATGAAAAATAGCTTA+TGG - chr1_4:48325357-48325376 Msa0166750:intron 20.0%
!! AATTATTTGAGCATATCTAT+TGG - chr1_4:48325456-48325475 Msa0166750:intron 20.0%
!! AAATAAGTTGTTCATTCAAA+CGG - chr1_4:48325683-48325702 Msa0166750:intron 20.0%
!! TAATTAAGCACTTATCATAT+AGG + chr1_4:48325718-48325737 None:intergenic 20.0%
!!! TTGTTTGGATTTTAAAGAAA+TGG - chr1_4:48325993-48326012 Msa0166750:intron 20.0%
!! TACCATTATTTAAATGGAAT+AGG + chr1_4:48326803-48326822 None:intergenic 20.0%
!! ATTCCATTTAAATAATGGTA+TGG - chr1_4:48326803-48326822 Msa0166750:intron 20.0%
!! TATCATAGAATAAGATAAAG+CGG + chr1_4:48327240-48327259 None:intergenic 20.0%
!!! CTAGATCCAAAAATAATTTT+GGG + chr1_4:48327509-48327528 None:intergenic 20.0%
!!! TCTAGATCCAAAAATAATTT+TGG + chr1_4:48327510-48327529 None:intergenic 20.0%
!!! ATTTTTGGATCTAGATATTT+TGG - chr1_4:48327515-48327534 Msa0166750:intron 20.0%
!!! TTATTTCTTAATGTAAGTAC+AGG - chr1_4:48327731-48327750 Msa0166750:CDS 20.0%
!! ATCAAATAGAATGAAATTCA+GGG + chr1_4:48327799-48327818 None:intergenic 20.0%
! AGAAGAAGAATCAAATTGAA+AGG - chr1_4:48321522-48321541 Msa0166750:three_prime_UTR 25.0%
! GAAGAAGAATCAAATTGAAA+GGG - chr1_4:48321523-48321542 Msa0166750:three_prime_UTR 25.0%
! TGATTTCAGCATAAAGATAT+GGG + chr1_4:48321750-48321769 None:intergenic 25.0%
! ATGATTTCAGCATAAAGATA+TGG + chr1_4:48321751-48321770 None:intergenic 25.0%
!! AAGTTTCGTTTTATGATTGA+TGG - chr1_4:48321815-48321834 Msa0166750:three_prime_UTR 25.0%
!! AGTTTCGTTTTATGATTGAT+GGG - chr1_4:48321816-48321835 Msa0166750:three_prime_UTR 25.0%
! ACAATATTAGGTCACTTAAA+TGG + chr1_4:48322162-48322181 None:intergenic 25.0%
!!! TTTTTTTTTTTTTGGAGAGG+GGG - chr1_4:48322323-48322342 Msa0166750:intron 25.0%
! GATTATAATATAACGATGCT+TGG - chr1_4:48322696-48322715 Msa0166750:intron 25.0%
! ACAGTTTGATATTGCTAATA+GGG - chr1_4:48322741-48322760 Msa0166750:intron 25.0%
! AGATTGTGAATTTGTGATTA+AGG + chr1_4:48322962-48322981 None:intergenic 25.0%
!! ATCATGTACCAATTTTATCT+TGG + chr1_4:48323012-48323031 None:intergenic 25.0%
! AAAATTAACAGTTCATAGTG+TGG + chr1_4:48323321-48323340 None:intergenic 25.0%
! AATTTCCACCAAAATCAAAA+TGG + chr1_4:48323468-48323487 None:intergenic 25.0%
!!! TTTGTTTCGTTTTGTTTTGT+TGG - chr1_4:48323943-48323962 Msa0166750:intron 25.0%
! AGTAAGAAAAAGAGTTGAAT+TGG + chr1_4:48324063-48324082 None:intergenic 25.0%
! ATCTGAATATGAAAGTGAAA+AGG + chr1_4:48324088-48324107 None:intergenic 25.0%
!! TTTGAAATTTGTGATTCTGA+TGG - chr1_4:48324274-48324293 Msa0166750:intron 25.0%
! GATGGTTAATGAATACAATA+AGG - chr1_4:48324375-48324394 Msa0166750:CDS 25.0%
!!! AATTAATTGTGTTGAGTTGA+TGG + chr1_4:48324417-48324436 None:intergenic 25.0%
! TGAACTTCATTATTTGATCA+TGG + chr1_4:48324442-48324461 None:intergenic 25.0%
! TGAACTTCATTATTTGATCA+TGG + chr1_4:48324442-48324461 None:intergenic 25.0%
!!! CTTGTTATTCATTTCAGATT+TGG - chr1_4:48324676-48324695 Msa0166750:intron 25.0%
!! ATCATGATTTCATCCAATTT+TGG - chr1_4:48325066-48325085 Msa0166750:intron 25.0%
!! TCATGATTTCATCCAATTTT+GGG - chr1_4:48325067-48325086 Msa0166750:intron 25.0%
! AAACTATTGTAGAGGATTTA+TGG + chr1_4:48325342-48325361 None:intergenic 25.0%
!!! TCAAAATAGCTTTATACTTG+AGG - chr1_4:48325420-48325439 Msa0166750:intron 25.0%
! TCAAATAATTCAATCCAAAC+AGG + chr1_4:48325446-48325465 None:intergenic 25.0%
! TTTATGACATGTTCATAAAC+AGG - chr1_4:48325528-48325547 Msa0166750:intron 25.0%
! AATAAGTTGTTCATTCAAAC+GGG - chr1_4:48325684-48325703 Msa0166750:CDS 25.0%
! GAATAGCTCTTATTCTTATA+AGG - chr1_4:48325779-48325798 Msa0166750:intron 25.0%
! TAAAAAATTTACTGCAGAAG+TGG - chr1_4:48325839-48325858 Msa0166750:intron 25.0%
! TGGAATGACATTATATTGTT+TGG - chr1_4:48325978-48325997 Msa0166750:intron 25.0%
!!! TTGGATTTTAAAGAAATGGA+AGG - chr1_4:48325997-48326016 Msa0166750:intron 25.0%
!!! TTTTAAAGAAATGGAAGGAT+TGG - chr1_4:48326002-48326021 Msa0166750:intron 25.0%
! TAAAACAACAATTCAAGAAG+AGG + chr1_4:48326340-48326359 None:intergenic 25.0%
!! GTTTCTTTTTCTTTTTACCT+TGG - chr1_4:48326368-48326387 Msa0166750:intron 25.0%
! ATACTATTATTGTTGAACCA+AGG + chr1_4:48326388-48326407 None:intergenic 25.0%
!! TCTAAACAAAAGTTTTGCTT+TGG + chr1_4:48326490-48326509 None:intergenic 25.0%
! TAAAAATACATAGTAGCTTG+TGG - chr1_4:48326555-48326574 Msa0166750:CDS 25.0%
! GTCCTATTCCATTTAAATAA+TGG - chr1_4:48326798-48326817 Msa0166750:intron 25.0%
! CATCCATACCATTATTTAAA+TGG + chr1_4:48326809-48326828 None:intergenic 25.0%
! TTCAAATAAGCGAAATAGAA+TGG + chr1_4:48326849-48326868 None:intergenic 25.0%
! CCAATATAAAAAGAATAACG+AGG + chr1_4:48326917-48326936 None:intergenic 25.0%
!! CCTCGTTATTCTTTTTATAT+TGG - chr1_4:48326914-48326933 Msa0166750:intron 25.0%
! AACTAATCAATGTTCTATTC+TGG - chr1_4:48327062-48327081 Msa0166750:intron 25.0%
! ATTTCCACTACTAGAAAAAT+CGG - chr1_4:48327085-48327104 Msa0166750:intron 25.0%
! ACCACAATCAACATAATTTA+GGG + chr1_4:48327484-48327503 None:intergenic 25.0%
! TACCACAATCAACATAATTT+AGG + chr1_4:48327485-48327504 None:intergenic 25.0%
!! TGGTATCCCAAAATTATTTT+TGG - chr1_4:48327500-48327519 Msa0166750:intron 25.0%
! TACATTAAGAAATAACGAGA+GGG + chr1_4:48327726-48327745 None:intergenic 25.0%
! TTACATTAAGAAATAACGAG+AGG + chr1_4:48327727-48327746 None:intergenic 25.0%
! GATCAAATAGAATGAAATTC+AGG + chr1_4:48327800-48327819 None:intergenic 25.0%
AGAATCAAATTGAAAGGGAA+TGG - chr1_4:48321528-48321547 Msa0166750:three_prime_UTR 30.0%
AAAAGAAGATCAACGTTAGT+GGG - chr1_4:48321559-48321578 Msa0166750:three_prime_UTR 30.0%
!!! TTTGGCTTTTCTAATGTTCA+TGG - chr1_4:48321582-48321601 Msa0166750:three_prime_UTR 30.0%
!! TTGGCTTTTCTAATGTTCAT+GGG - chr1_4:48321583-48321602 Msa0166750:three_prime_UTR 30.0%
!! TTGCTGTTTATTTCAGACTT+TGG - chr1_4:48321608-48321627 Msa0166750:three_prime_UTR 30.0%
! TGCTGTTTATTTCAGACTTT+GGG - chr1_4:48321609-48321628 Msa0166750:three_prime_UTR 30.0%
AGTGTTACATTCATAGACTA+AGG + chr1_4:48321887-48321906 None:intergenic 30.0%
TAATCAAACAATCAAACACG+AGG + chr1_4:48322188-48322207 None:intergenic 30.0%
CGTGTTTGATTGTTTGATTA+TGG - chr1_4:48322188-48322207 Msa0166750:CDS 30.0%
AATGTAATCAAGATGAACGA+GGG + chr1_4:48322232-48322251 None:intergenic 30.0%
AAATGTAATCAAGATGAACG+AGG + chr1_4:48322233-48322252 None:intergenic 30.0%
ATGTTGTTAATCTCAGATAG+TGG + chr1_4:48322540-48322559 None:intergenic 30.0%
ATACATGTTAGTGTTCTGTT+CGG - chr1_4:48322599-48322618 Msa0166750:intron 30.0%
GACAGTTTGATATTGCTAAT+AGG - chr1_4:48322740-48322759 Msa0166750:intron 30.0%
GTTCAAGTATTATACCATTG+TGG - chr1_4:48322912-48322931 Msa0166750:intron 30.0%
TTGTGAATTTGTGATTAAGG+CGG + chr1_4:48322959-48322978 None:intergenic 30.0%
AAATTCACAATCTGTGTGAA+TGG - chr1_4:48322969-48322988 Msa0166750:intron 30.0%
AATTCACAATCTGTGTGAAT+GGG - chr1_4:48322970-48322989 Msa0166750:intron 30.0%
! ATTTTACAGGAAAGACAAAG+GGG + chr1_4:48323100-48323119 None:intergenic 30.0%
! GATTTTACAGGAAAGACAAA+GGG + chr1_4:48323101-48323120 None:intergenic 30.0%
! AGATTTTACAGGAAAGACAA+AGG + chr1_4:48323102-48323121 None:intergenic 30.0%
! TTCCTGTAAAATCTTTTGTG+TGG - chr1_4:48323108-48323127 Msa0166750:intron 30.0%
GCAAATTTATGGTTAATACC+AGG + chr1_4:48323170-48323189 None:intergenic 30.0%
! ATTTGGGACTGATTATAAGT+TGG + chr1_4:48323364-48323383 None:intergenic 30.0%
!!! TTCTACCATTTTGATTTTGG+TGG - chr1_4:48323460-48323479 Msa0166750:intron 30.0%
AGAATGCAATCTTACTTGAA+AGG - chr1_4:48323570-48323589 Msa0166750:intron 30.0%
GAATGCAATCTTACTTGAAA+GGG - chr1_4:48323571-48323590 Msa0166750:intron 30.0%
TTATTGGATTCAGAGGAAAT+AGG + chr1_4:48323985-48324004 None:intergenic 30.0%
GAATGAATTATTGGATTCAG+AGG + chr1_4:48323992-48324011 None:intergenic 30.0%
TCAACACTATTAATCGACAA+CGG + chr1_4:48324252-48324271 None:intergenic 30.0%
ATTATGTTCATCAGATCAGA+TGG - chr1_4:48324357-48324376 Msa0166750:CDS 30.0%
GATCATGGTTAATTAACCAT+CGG + chr1_4:48324488-48324507 None:intergenic 30.0%
TAAGCTGTTTATGTTATCGT+TGG - chr1_4:48324616-48324635 Msa0166750:intron 30.0%
TGTTTATGTTATCGTTGGAT+TGG - chr1_4:48324621-48324640 Msa0166750:intron 30.0%
ATACCTTGGTACATTCAATT+TGG - chr1_4:48324652-48324671 Msa0166750:intron 30.0%
ATGTAACTGTATAATCACTC+AGG + chr1_4:48324841-48324860 None:intergenic 30.0%
AAAACACGTAATCAGTTAAC+TGG + chr1_4:48324888-48324907 None:intergenic 30.0%
TAAGTATTTGTGAGACTACT+TGG - chr1_4:48325262-48325281 Msa0166750:intron 30.0%
AAGTATTTGTGAGACTACTT+GGG - chr1_4:48325263-48325282 Msa0166750:intron 30.0%
!!! GTTGTTTTAATAAGCTATGC+TGG + chr1_4:48325578-48325597 None:intergenic 30.0%
ATAAGTTGTTCATTCAAACG+GGG - chr1_4:48325685-48325704 Msa0166750:CDS 30.0%
!!! TACTTGTTTTAAGCTCAGTT+TGG + chr1_4:48325751-48325770 None:intergenic 30.0%
TCTTATTCTTATAAGGCTGT+TGG - chr1_4:48325786-48325805 Msa0166750:intron 30.0%
!!! AAGTGGATTTTGACTTATGA+GGG - chr1_4:48325856-48325875 Msa0166750:intron 30.0%
ATAAGATCATCTCATCCTTA+GGG - chr1_4:48325906-48325925 Msa0166750:intron 30.0%
ATCAATTCAAAGATACCCTA+AGG + chr1_4:48325924-48325943 None:intergenic 30.0%
! TTAGGGTATCTTTGAATTGA+TGG - chr1_4:48325923-48325942 Msa0166750:intron 30.0%
TTTGAATTGATGGAACATAG+TGG - chr1_4:48325933-48325952 Msa0166750:intron 30.0%
TTGAATTGATGGAACATAGT+GGG - chr1_4:48325934-48325953 Msa0166750:intron 30.0%
TGAAAAGGAATAGAATGGAA+TGG - chr1_4:48325958-48325977 Msa0166750:intron 30.0%
AGCAAAATGAAGTGATATGA+TGG + chr1_4:48326061-48326080 None:intergenic 30.0%
ATCCTATACATCCCAAATTT+GGG + chr1_4:48326086-48326105 None:intergenic 30.0%
GGTGGATAATAAGGTTATAA+GGG + chr1_4:48326135-48326154 None:intergenic 30.0%
! TGGTGGATAATAAGGTTATA+AGG + chr1_4:48326136-48326155 None:intergenic 30.0%
!!! CACAAGATTGGTTTTAGAAT+AGG + chr1_4:48326215-48326234 None:intergenic 30.0%
!!! TGCAAGATAGGTTTTAGAAT+AGG + chr1_4:48326277-48326296 None:intergenic 30.0%
ACAAAAAGAGCAATGACTTA+AGG - chr1_4:48326530-48326549 Msa0166750:CDS 30.0%
!!! GGATTTTTTCTTCAGTTTCT+TGG + chr1_4:48327342-48327361 None:intergenic 30.0%
TGTAACAACTGTGAAAAAGT+AGG - chr1_4:48327423-48327442 Msa0166750:intron 30.0%
CCACAATCAACATAATTTAG+GGG + chr1_4:48327483-48327502 None:intergenic 30.0%
TGAGTGAAGACTAAAATGTT+AGG - chr1_4:48327679-48327698 Msa0166750:CDS 30.0%
ACATTAAGAAATAACGAGAG+GGG + chr1_4:48327725-48327744 None:intergenic 30.0%
TTTCTTAATGTAAGTACAGG+AGG - chr1_4:48327734-48327753 Msa0166750:CDS 30.0%
ATAGAATGAAATTCAGGGTT+TGG + chr1_4:48327794-48327813 None:intergenic 30.0%
GAAAAGAAGATCAACGTTAG+TGG - chr1_4:48321558-48321577 Msa0166750:three_prime_UTR 35.0%
CAAATCAAATGTTGCAGAAG+AGG + chr1_4:48321685-48321704 None:intergenic 35.0%
ACACTGACATTTCAGATTGA+AGG - chr1_4:48321902-48321921 Msa0166750:CDS 35.0%
ATCGTGTCAGTATCAAACAA+AGG + chr1_4:48321949-48321968 None:intergenic 35.0%
TACTCTTAAAGATGCTTTGC+GGG + chr1_4:48322070-48322089 None:intergenic 35.0%
CTACTCTTAAAGATGCTTTG+CGG + chr1_4:48322071-48322090 None:intergenic 35.0%
TTAAGAGTAGTGTGTGTTAG+CGG - chr1_4:48322081-48322100 Msa0166750:intron 35.0%
ATGAATAGTGGTAGAAAAGC+AGG - chr1_4:48322110-48322129 Msa0166750:intron 35.0%
TGAATAGTGGTAGAAAAGCA+GGG - chr1_4:48322111-48322130 Msa0166750:intron 35.0%
CTTAAATGGTTAAACCGCTA+CGG + chr1_4:48322148-48322167 None:intergenic 35.0%
AACACGAGGCTTACAATATT+AGG + chr1_4:48322174-48322193 None:intergenic 35.0%
TACTCTATGAATCACAGACA+CGG + chr1_4:48322646-48322665 None:intergenic 35.0%
GTTTGATATTGCTAATAGGG+AGG - chr1_4:48322744-48322763 Msa0166750:intron 35.0%
TTCTAGTCATTCACTTTGGA+AGG + chr1_4:48322884-48322903 None:intergenic 35.0%
TCCAAAGTGAATGACTAGAA+AGG - chr1_4:48322884-48322903 Msa0166750:intron 35.0%
! ACCTTTCTAGTCATTCACTT+TGG + chr1_4:48322888-48322907 None:intergenic 35.0%
GTGAATGACTAGAAAGGTTA+AGG - chr1_4:48322890-48322909 Msa0166750:intron 35.0%
ATTCACAATCTGTGTGAATG+GGG - chr1_4:48322971-48322990 Msa0166750:intron 35.0%
! TGCCACACAAAAGATTTTAC+AGG + chr1_4:48323113-48323132 None:intergenic 35.0%
! TTATCCTTGTTTCCCTAAGA+TGG + chr1_4:48323282-48323301 None:intergenic 35.0%
!! ATTGACTTGAGCAAAATCAG+CGG + chr1_4:48323413-48323432 None:intergenic 35.0%
!! TTTTTGGCATTCTTTTGGCA+TGG - chr1_4:48323489-48323508 Msa0166750:intron 35.0%
GACCTTCAACTTTATATTCC+AGG - chr1_4:48323547-48323566 Msa0166750:intron 35.0%
CTCCTGGAATATAAAGTTGA+AGG + chr1_4:48323552-48323571 None:intergenic 35.0%
ATTAAAACGACAGCTTGAAG+AGG - chr1_4:48323601-48323620 Msa0166750:intron 35.0%
GTTGTTAAGTTAACCACATG+CGG + chr1_4:48323900-48323919 None:intergenic 35.0%
TGTTAATTGTGTGTATCCGA+TGG - chr1_4:48324469-48324488 Msa0166750:intron 35.0%
AGACCAAATTGAATGTACCA+AGG + chr1_4:48324658-48324677 None:intergenic 35.0%
! TTACGTGTTTTTCCACAGAA+TGG - chr1_4:48324897-48324916 Msa0166750:intron 35.0%
ATTGTGAATGCTGCGAAAAA+TGG - chr1_4:48324988-48325007 Msa0166750:intron 35.0%
TGGATGAAATCATGATTGCA+GGG + chr1_4:48325062-48325081 None:intergenic 35.0%
TTGGATGAAATCATGATTGC+AGG + chr1_4:48325063-48325082 None:intergenic 35.0%
AGCGTAATAAGACCCAAAAT+TGG + chr1_4:48325082-48325101 None:intergenic 35.0%
! AGTCTAAAGTGGGATTTAGT+TGG + chr1_4:48325130-48325149 None:intergenic 35.0%
! GTTCAAAGCTAGTCTAAAGT+GGG + chr1_4:48325140-48325159 None:intergenic 35.0%
! AGTTCAAAGCTAGTCTAAAG+TGG + chr1_4:48325141-48325160 None:intergenic 35.0%
!! TAGACTAGCTTTGAACTTCT+AGG - chr1_4:48325144-48325163 Msa0166750:intron 35.0%
TAAGTATTTGTGAGACTGCT+TGG - chr1_4:48325228-48325247 Msa0166750:intron 35.0%
!!! GAAGTGGATTTTGACTTATG+AGG - chr1_4:48325855-48325874 Msa0166750:intron 35.0%
CATAAGATCATCTCATCCTT+AGG - chr1_4:48325905-48325924 Msa0166750:intron 35.0%
TGGGATGAAAAGGAATAGAA+TGG - chr1_4:48325953-48325972 Msa0166750:intron 35.0%
AAGAAATGGAAGGATTGGAT+TGG - chr1_4:48326007-48326026 Msa0166750:intron 35.0%
GTATTGAAATAGATTCCACC+AGG + chr1_4:48326035-48326054 None:intergenic 35.0%
! TCATTTTGCTTCCCCAAATT+TGG - chr1_4:48326071-48326090 Msa0166750:intron 35.0%
! CATTTTGCTTCCCCAAATTT+GGG - chr1_4:48326072-48326091 Msa0166750:intron 35.0%
TCCTATACATCCCAAATTTG+GGG + chr1_4:48326085-48326104 None:intergenic 35.0%
CATCCTATACATCCCAAATT+TGG + chr1_4:48326087-48326106 None:intergenic 35.0%
! CAAATTTGGGATGTATAGGA+TGG - chr1_4:48326085-48326104 Msa0166750:intron 35.0%
AAAGAGGAAGAACACAAGAT+TGG + chr1_4:48326164-48326183 None:intergenic 35.0%
AATCTTGTGTTCTTCCTCTT+TGG - chr1_4:48326163-48326182 Msa0166750:CDS 35.0%
GTTTGCAGCAAAGAATATAG+TGG - chr1_4:48326459-48326478 Msa0166750:intron 35.0%
AAACGATCCATACCATTTGA+TGG + chr1_4:48326697-48326716 None:intergenic 35.0%
GCATTTGATGGAACATAGTA+GGG + chr1_4:48326766-48326785 None:intergenic 35.0%
AGCATTTGATGGAACATAGT+AGG + chr1_4:48326767-48326786 None:intergenic 35.0%
CTATGTTCCATCAAATGCTA+TGG - chr1_4:48326768-48326787 Msa0166750:intron 35.0%
! AAAGCATCCATAGCATTTGA+TGG + chr1_4:48326778-48326797 None:intergenic 35.0%
!!! CGACACTTTCTTTTGAAACT+CGG + chr1_4:48327177-48327196 None:intergenic 35.0%
! CGAGTTTCAAAAGAAAGTGT+CGG - chr1_4:48327175-48327194 Msa0166750:intron 35.0%
AGGAAAACATGCATGTAAGT+TGG + chr1_4:48327271-48327290 None:intergenic 35.0%
TTCCTATGAATACAGAGTAG+CGG - chr1_4:48327286-48327305 Msa0166750:intron 35.0%
TCACAGTTGTTACATGCTTA+AGG + chr1_4:48327417-48327436 None:intergenic 35.0%
! AGGAACCTTTGATGATTTGT+TGG - chr1_4:48327443-48327462 Msa0166750:intron 35.0%
! CCCCTAAATTATGTTGATTG+TGG - chr1_4:48327480-48327499 Msa0166750:intron 35.0%
!!! TGGATCTAGATATTTTGGTG+CGG - chr1_4:48327520-48327539 Msa0166750:intron 35.0%
TATTTGAATACATCGCAGCA+AGG + chr1_4:48327571-48327590 None:intergenic 35.0%
TGAAATTCAGGGTTTGGAAA+GGG + chr1_4:48327788-48327807 None:intergenic 35.0%
ATGAAATTCAGGGTTTGGAA+AGG + chr1_4:48327789-48327808 None:intergenic 35.0%
!! AAGATCAACGTTAGTGGGTT+TGG - chr1_4:48321564-48321583 Msa0166750:three_prime_UTR 40.0%
TCGATGATTCTGAGCTCATA+AGG - chr1_4:48321653-48321672 Msa0166750:three_prime_UTR 40.0%
TTTCAGATTGAAGGTCTGTC+TGG - chr1_4:48321911-48321930 Msa0166750:CDS 40.0%
TCAGTATCAAACAAAGGCAG+TGG + chr1_4:48321943-48321962 None:intergenic 40.0%
! TATACCGCTAGAGCATCTTT+GGG - chr1_4:48322499-48322518 Msa0166750:intron 40.0%
TGGTCCACTCAACTATATGT+AGG - chr1_4:48322716-48322735 Msa0166750:intron 40.0%
GTCTCCTACATATAGTTGAG+TGG + chr1_4:48322723-48322742 None:intergenic 40.0%
TATTGCTAATAGGGAGGCAA+TGG - chr1_4:48322750-48322769 Msa0166750:intron 40.0%
GTGGAGGCTAAAGTATGATA+AGG - chr1_4:48322786-48322805 Msa0166750:intron 40.0%
GAGGCTAAAGTATGATAAGG+AGG - chr1_4:48322789-48322808 Msa0166750:intron 40.0%
GCTAAAGTATGATAAGGAGG+TGG - chr1_4:48322792-48322811 Msa0166750:intron 40.0%
AGTATGATAAGGAGGTGGAT+AGG - chr1_4:48322797-48322816 Msa0166750:intron 40.0%
GTATGATAAGGAGGTGGATA+GGG - chr1_4:48322798-48322817 Msa0166750:intron 40.0%
GTGCTTAAAGGAACTTCAAG+TGG - chr1_4:48322828-48322847 Msa0166750:intron 40.0%
! TGAAGTACTACGAACCACAA+TGG + chr1_4:48322929-48322948 None:intergenic 40.0%
AATTTGTGATTAAGGCGGCT+AGG + chr1_4:48322954-48322973 None:intergenic 40.0%
!! GTTAATACCAGGAGCATCTT+TGG + chr1_4:48323159-48323178 None:intergenic 40.0%
TTCTATTCCCTAGCCATCTT+AGG - chr1_4:48323266-48323285 Msa0166750:intron 40.0%
TCTATTCCCTAGCCATCTTA+GGG - chr1_4:48323267-48323286 Msa0166750:intron 40.0%
TTGTTTCCCTAAGATGGCTA+GGG + chr1_4:48323276-48323295 None:intergenic 40.0%
! TTGACTTGAGCAAAATCAGC+GGG + chr1_4:48323412-48323431 None:intergenic 40.0%
CAAGTAAGATTGCATTCTCC+TGG + chr1_4:48323568-48323587 None:intergenic 40.0%
TGCAATCTTACTTGAAAGGG+TGG - chr1_4:48323574-48323593 Msa0166750:intron 40.0%
CGTATCGGGGAATGAATTAT+TGG + chr1_4:48324001-48324020 None:intergenic 40.0%
AATTCATTCCCCGATACGAT+AGG - chr1_4:48324003-48324022 Msa0166750:intron 40.0%
! ATGTTATCGTTGGATTGGAC+AGG - chr1_4:48324626-48324645 Msa0166750:intron 40.0%
GATTGGACAGGATTATACCT+TGG - chr1_4:48324638-48324657 Msa0166750:intron 40.0%
!! AGCTTTGAACTTCTAGGACT+AGG - chr1_4:48325150-48325169 Msa0166750:intron 40.0%
!! TTTGAACTTCTAGGACTAGG+AGG - chr1_4:48325153-48325172 Msa0166750:intron 40.0%
AGACTACTTGGGAGAACTTA+TGG - chr1_4:48325274-48325293 Msa0166750:intron 40.0%
CTTTATACTTGAGGCCTGTT+TGG - chr1_4:48325429-48325448 Msa0166750:intron 40.0%
TGAGCATATCTATTGGCCAT+TGG - chr1_4:48325463-48325482 Msa0166750:intron 40.0%
ATTTGCAGCGAAGCTAAATG+AGG - chr1_4:48325810-48325829 Msa0166750:intron 40.0%
TTTGCAGCGAAGCTAAATGA+GGG - chr1_4:48325811-48325830 Msa0166750:intron 40.0%
! TGGAACATAGTGGGATGAAA+AGG - chr1_4:48325943-48325962 Msa0166750:intron 40.0%
! TCCCCAAATTTGGGATGTAT+AGG - chr1_4:48326081-48326100 Msa0166750:intron 40.0%
!! TGGTTGCATGGTGGATAATA+AGG + chr1_4:48326144-48326163 None:intergenic 40.0%
! AGAACACAAGATTGGTTGCA+TGG + chr1_4:48326156-48326175 None:intergenic 40.0%
CAATCTTGTGTTCTTCCTCT+CGG - chr1_4:48326162-48326181 Msa0166750:CDS 40.0%
ACAGAGGAAGAATGCAAGAT+AGG + chr1_4:48326289-48326308 None:intergenic 40.0%
TATCTTGCATTCTTCCTCTG+TGG - chr1_4:48326288-48326307 Msa0166750:intron 40.0%
CTCTGTTCCATCAAATGGTA+TGG - chr1_4:48326687-48326706 Msa0166750:intron 40.0%
TTTGATGGAACATAGTAGGG+TGG + chr1_4:48326763-48326782 None:intergenic 40.0%
! ATGGATGCTTTGTTGCATTC+TGG - chr1_4:48326822-48326841 Msa0166750:intron 40.0%
TTCTTGATGTGCAATGAGCA+TGG - chr1_4:48326962-48326981 Msa0166750:intron 40.0%
TCTTGATGTGCAATGAGCAT+GGG - chr1_4:48326963-48326982 Msa0166750:intron 40.0%
CAATCACGTATAAACGCATG+AGG + chr1_4:48327003-48327022 None:intergenic 40.0%
AGTGTTCGCTAAAATGTGCA+TGG + chr1_4:48327031-48327050 None:intergenic 40.0%
!! CTAGCCGATTTTTCTAGTAG+TGG + chr1_4:48327092-48327111 None:intergenic 40.0%
CACTACTAGAAAAATCGGCT+AGG - chr1_4:48327090-48327109 Msa0166750:intron 40.0%
GTTGAAACAAGCCAAAGAAG+AGG - chr1_4:48327112-48327131 Msa0166750:intron 40.0%
AAAAGGAGATTGCTGCATAC+CGG - chr1_4:48327138-48327157 Msa0166750:intron 40.0%
AATCCATCACCTGAAAACAG+AGG - chr1_4:48327357-48327376 Msa0166750:intron 40.0%
! TTCTATCAGCCTCTGTTTTC+AGG + chr1_4:48327369-48327388 None:intergenic 40.0%
TGTTACATGCTTAAGGAGCA+TGG + chr1_4:48327410-48327429 None:intergenic 40.0%
CTGCACCAACAAATCATCAA+AGG + chr1_4:48327451-48327470 None:intergenic 40.0%
GAAATTCAGGGTTTGGAAAG+GGG + chr1_4:48327787-48327806 None:intergenic 40.0%
GTATCAAACAAAGGCAGTGG+TGG + chr1_4:48321940-48321959 None:intergenic 45.0%
ACTACACTACACCGCAATAG+CGG + chr1_4:48322025-48322044 None:intergenic 45.0%
TAGCGGTTGCGAATGAATAG+TGG - chr1_4:48322098-48322117 Msa0166750:intron 45.0%
AAGATGCTCTAGCGGTATAG+CGG + chr1_4:48322498-48322517 None:intergenic 45.0%
! CTATACCGCTAGAGCATCTT+TGG - chr1_4:48322498-48322517 Msa0166750:intron 45.0%
! ATACCGCTAGAGCATCTTTG+GGG - chr1_4:48322500-48322519 Msa0166750:intron 45.0%
CAATGGATGAATCTGCTGAG+TGG - chr1_4:48322767-48322786 Msa0166750:intron 45.0%
TAGGGTGAATGGGTGCTTAA+AGG - chr1_4:48322816-48322835 Msa0166750:intron 45.0%
CTTGTTTCCCTAAGATGGCT+AGG + chr1_4:48323277-48323296 None:intergenic 45.0%
CTAGCCATCTTAGGGAAACA+AGG - chr1_4:48323275-48323294 Msa0166750:intron 45.0%
! TTGAGCAAAATCAGCGGGTT+CGG + chr1_4:48323407-48323426 None:intergenic 45.0%
TAAGTTAACCACATGCGGAC+AGG + chr1_4:48323895-48323914 None:intergenic 45.0%
! AGAAGCGTACCTATCGTATC+GGG + chr1_4:48324015-48324034 None:intergenic 45.0%
! GAGAAGCGTACCTATCGTAT+CGG + chr1_4:48324016-48324035 None:intergenic 45.0%
TGAGAAGCAAAGATCGACGA+TGG + chr1_4:48324111-48324130 None:intergenic 45.0%
AATGGCATCCACATCCAACA+GGG - chr1_4:48324915-48324934 Msa0166750:intron 45.0%
AGGAGGAATTCAGCAGTTGT+TGG - chr1_4:48324942-48324961 Msa0166750:intron 45.0%
! CAGCTGAACAAGAAGCACAA+CGG - chr1_4:48324965-48324984 Msa0166750:intron 45.0%
GATTGCAGGGCAAAGAACAT+TGG + chr1_4:48325049-48325068 None:intergenic 45.0%
! ACACAAGATTGGTTGCATGG+TGG + chr1_4:48326153-48326172 None:intergenic 45.0%
CCATTGTTGTAGAGCCAAAG+AGG + chr1_4:48326180-48326199 None:intergenic 45.0%
!! CCTCTTTGGCTCTACAACAA+TGG - chr1_4:48326177-48326196 Msa0166750:intron 45.0%
CGAGAGGAAGAACACAAGAT+TGG + chr1_4:48326227-48326246 None:intergenic 45.0%
TCCTCTCGGTTCTACAACAA+TGG - chr1_4:48326239-48326258 Msa0166750:intron 45.0%
CTCTGCTCTGTTCCATCAAA+TGG - chr1_4:48326682-48326701 Msa0166750:intron 45.0%
CATAGTAGGGTGGAACTGAA+CGG + chr1_4:48326733-48326752 None:intergenic 45.0%
TGGAACTGAACATAGTAGGG+TGG + chr1_4:48326743-48326762 None:intergenic 45.0%
GGGTGGAACTGAACATAGTA+GGG + chr1_4:48326746-48326765 None:intergenic 45.0%
AGGGTGGAACTGAACATAGT+AGG + chr1_4:48326747-48326766 None:intergenic 45.0%
AGCCAAAGAAGAGGCTGAAA+AGG - chr1_4:48327121-48327140 Msa0166750:intron 45.0%
! CTCCTTTTCAGCCTCTTCTT+TGG + chr1_4:48327126-48327145 None:intergenic 45.0%
AAAGGAGATTGCTGCATACC+GGG - chr1_4:48327139-48327158 Msa0166750:intron 45.0%
CACCGCTACTCTGTATTCAT+AGG + chr1_4:48327291-48327310 None:intergenic 45.0%
ATACAGAGTAGCGGTGATTC+TGG - chr1_4:48327295-48327314 Msa0166750:intron 45.0%
! ATAACGAGAGGGGCTTGTTT+AGG + chr1_4:48327715-48327734 None:intergenic 45.0%
!!! ACAATATTTTTTTTTTTTTT+TGG - chr1_4:48322315-48322334 Msa0166750:intron 5.0%
! GCACTATAGTGCCGCTATTG+CGG - chr1_4:48322011-48322030 Msa0166750:intron 50.0%
ATGGTTAAACCGCTACGGCA+TGG + chr1_4:48322143-48322162 None:intergenic 50.0%
! GAGGGCATGATGAAAGAGAG+CGG + chr1_4:48322214-48322233 None:intergenic 50.0%
!! GGTATAGCGGATAGCAGGAT+GGG + chr1_4:48322485-48322504 None:intergenic 50.0%
! TACCGCTAGAGCATCTTTGG+GGG - chr1_4:48322501-48322520 Msa0166750:intron 50.0%
TGGATGAATCTGCTGAGTGG+AGG - chr1_4:48322770-48322789 Msa0166750:intron 50.0%
AAGGAGGTGGATAGGGTGAA+TGG - chr1_4:48322805-48322824 Msa0166750:intron 50.0%
AGGAGGTGGATAGGGTGAAT+GGG - chr1_4:48322806-48322825 Msa0166750:intron 50.0%
CAGATAGCCAAAGATGCTCC+TGG - chr1_4:48323149-48323168 Msa0166750:intron 50.0%
CAGGACACGACGAAGGATAT+GGG + chr1_4:48323876-48323895 None:intergenic 50.0%
ACAGGACACGACGAAGGATA+TGG + chr1_4:48323877-48323896 None:intergenic 50.0%
GAAGCGTACCTATCGTATCG+GGG + chr1_4:48324014-48324033 None:intergenic 50.0%
TGGATGTGGATGCCATTCTG+TGG + chr1_4:48324912-48324931 None:intergenic 50.0%
GAATGGCATCCACATCCAAC+AGG - chr1_4:48324914-48324933 Msa0166750:intron 50.0%
ATGGCATCCACATCCAACAG+GGG - chr1_4:48324916-48324935 Msa0166750:intron 50.0%
AATTCCTCCTTGACCCCTGT+TGG + chr1_4:48324932-48324951 None:intergenic 50.0%
AGGGCAAAGAACATTGGCAC+AGG + chr1_4:48325043-48325062 None:intergenic 50.0%
! GGAAGGATTGGATTGGAACC+TGG - chr1_4:48326014-48326033 Msa0166750:intron 50.0%
! AGGATTGGATTGGAACCTGG+TGG - chr1_4:48326017-48326036 Msa0166750:intron 50.0%
GCCATTGTTGTAGAACCGAG+AGG + chr1_4:48326243-48326262 None:intergenic 50.0%
ATACAGCAGCCACTGAAGCA+GGG + chr1_4:48326314-48326333 None:intergenic 50.0%
AATACAGCAGCCACTGAAGC+AGG + chr1_4:48326315-48326334 None:intergenic 50.0%
!!! CAGCCTCTGTTTTCAGGTGA+TGG + chr1_4:48327363-48327382 None:intergenic 50.0%
!! GATTTGTTGGTGCAGCTGAG+CGG - chr1_4:48327456-48327475 Msa0166750:intron 50.0%
TGTCCCCACTGTCACAGCAT+AGG - chr1_4:48322044-48322063 Msa0166750:intron 55.0%
!! CGGTATAGCGGATAGCAGGA+TGG + chr1_4:48322486-48322505 None:intergenic 55.0%
!! CTAGCGGTATAGCGGATAGC+AGG + chr1_4:48322490-48322509 None:intergenic 55.0%
GACCCCCAAAGATGCTCTAG+CGG + chr1_4:48322506-48322525 None:intergenic 55.0%
!! TTCGGTGTCAGTGTCCTGTG+TGG - chr1_4:48322617-48322636 Msa0166750:intron 55.0%
TCCACATCCAACAGGGGTCA+AGG - chr1_4:48324922-48324941 Msa0166750:intron 55.0%
TCCTTGACCCCTGTTGGATG+TGG + chr1_4:48324926-48324945 None:intergenic 55.0%
ACATCCAACAGGGGTCAAGG+AGG - chr1_4:48324925-48324944 Msa0166750:intron 55.0%
TGCATACCGGGCTAAGCTTG+AGG - chr1_4:48327151-48327170 Msa0166750:intron 55.0%
GGGCCTATGCTGTGACAGTG+GGG + chr1_4:48322050-48322069 None:intergenic 60.0%
CGGGCCTATGCTGTGACAGT+GGG + chr1_4:48322051-48322070 None:intergenic 60.0%
GGGCAATTGCCATGCCGTAG+CGG - chr1_4:48322131-48322150 Msa0166750:CDS 60.0%
CACAGACACGGACACCACAC+AGG + chr1_4:48322634-48322653 None:intergenic 60.0%
ATGCGGACAGGACACGACGA+AGG + chr1_4:48323883-48323902 None:intergenic 60.0%
ACTCGGCCTCAAGCTTAGCC+CGG + chr1_4:48327160-48327179 None:intergenic 60.0%
GCGGGCCTATGCTGTGACAG+TGG + chr1_4:48322052-48322071 None:intergenic 65.0%
CGTCGTGTCCTGTCCGCATG+TGG - chr1_4:48323884-48323903 Msa0166750:intron 65.0%
CCACTGAAGCAGGGCCACAG+AGG + chr1_4:48326305-48326324 None:intergenic 65.0%
CCTCTGTGGCCCTGCTTCAG+TGG - chr1_4:48326302-48326321 Msa0166750:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 48321497 48327820 48321497 ID=Msa0166750;Name=Msa0166750
chr1_4 mRNA 48321497 48327820 48321497 ID=Msa0166750-mRNA-1;Parent=Msa0166750;Name=Msa0166750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=50|0.83|0.85|1|1|1|7|376|237
chr1_4 exon 48321497 48322016 48321497 ID=Msa0166750-mRNA-1:exon:14061;Parent=Msa0166750-mRNA-1
chr1_4 exon 48322118 48322218 48322118 ID=Msa0166750-mRNA-1:exon:14060;Parent=Msa0166750-mRNA-1
chr1_4 exon 48324308 48324402 48324308 ID=Msa0166750-mRNA-1:exon:14059;Parent=Msa0166750-mRNA-1
chr1_4 exon 48325684 48325748 48325684 ID=Msa0166750-mRNA-1:exon:14058;Parent=Msa0166750-mRNA-1
chr1_4 exon 48326115 48326183 48326115 ID=Msa0166750-mRNA-1:exon:14057;Parent=Msa0166750-mRNA-1
chr1_4 exon 48326468 48326579 48326468 ID=Msa0166750-mRNA-1:exon:14056;Parent=Msa0166750-mRNA-1
chr1_4 exon 48327643 48327820 48327643 ID=Msa0166750-mRNA-1:exon:14055;Parent=Msa0166750-mRNA-1
chr1_4 five_prime_UTR 48327771 48327820 48327771 ID=Msa0166750-mRNA-1:five_prime_utr;Parent=Msa0166750-mRNA-1
chr1_4 CDS 48327643 48327770 48327643 ID=Msa0166750-mRNA-1:cds;Parent=Msa0166750-mRNA-1
chr1_4 CDS 48326468 48326579 48326468 ID=Msa0166750-mRNA-1:cds;Parent=Msa0166750-mRNA-1
chr1_4 CDS 48326115 48326183 48326115 ID=Msa0166750-mRNA-1:cds;Parent=Msa0166750-mRNA-1
chr1_4 CDS 48325684 48325748 48325684 ID=Msa0166750-mRNA-1:cds;Parent=Msa0166750-mRNA-1
chr1_4 CDS 48324308 48324402 48324308 ID=Msa0166750-mRNA-1:cds;Parent=Msa0166750-mRNA-1
chr1_4 CDS 48322118 48322218 48322118 ID=Msa0166750-mRNA-1:cds;Parent=Msa0166750-mRNA-1
chr1_4 CDS 48321873 48322016 48321873 ID=Msa0166750-mRNA-1:cds;Parent=Msa0166750-mRNA-1
chr1_4 three_prime_UTR 48321497 48321872 48321497 ID=Msa0166750-mRNA-1:three_prime_utr;Parent=Msa0166750-mRNA-1
Gene Sequence

>Msa0166750

ATGGTTGTAGTGAAAAGAAGATCAACGTTAGTGGGTTTGGCTTTTCTAATGTTCATGGGTATTGCTGTTTATTTCAGACTTTGGGCTATTGATTACAACATTTCAATCGATGATTCTGAGCTCATAAGGAGACAGTTTGATATTGCTAATAGGGAGGCAATGGATGAATCTGCTGAGTGGAGGCTAAAGTATGATAAGGAGGTGGATAGGGTGAATGGGTGCTTAAAGGAACTTCAAGTGTTTCAGAACTCGTCTCAGATAGCCAAAGATGCTCCTGGTATTAACCATAAATTTGCAATACTACAAAAGGAGAATGCAATCTTACTTGAAAGGGTGGAAACATTAAAACGACAGCTTGAAGAGGAAAAGCTGAAAATGGCATCCACATCCAACAGGGGTCAAGGAGGAATTCAGCAGTTGTTGGCAGCTGAACAAGAAGCACAACGGATTGTGAATGCTGCGAAAAATGAAAAATCGGCTAGGTTGAAACAAGCCAAAGAAGAGGCTGAAAAGGAGATTGCTGCATACCGGGCTAAGCTTGAGGCCGAGTTTCAAAAGAAAGTGTCGGATAGTAGCGGTGATTCTGGCGCTAATGTCAAGCGACTTGACCAAGAAACTGAAGAAAAAATCCATCACCTGAAAACAGAGGCTGATAGAATTTCAGATGATGTCGTTGCCATGCTCCTTAAGCATGTAACAACTGTGAAAAAGTAG

Protein sequence

>Msa0166750

MVVVKRRSTLVGLAFLMFMGIAVYFRLWAIDYNISIDDSELIRRQFDIANREAMDESAEWRLKYDKEVDRVNGCLKELQVFQNSSQIAKDAPGINHKFAILQKENAILLERVETLKRQLEEEKLKMASTSNRGQGGIQQLLAAEQEAQRIVNAAKNEKSARLKQAKEEAEKEIAAYRAKLEAEFQKKVSDSSGDSGANVKRLDQETEEKIHHLKTEADRISDDVVAMLLKHVTTVKK*