AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006880 MtrunA17_Chr1g0148991 100.000 122 0 0 1 122 1 122 7.22e-87 248
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006880 AT5G25450.1 79.508 122 25 0 1 122 1 122 2.71e-69 204
Msa0006880 AT4G32470.1 77.869 122 27 0 1 122 1 122 1.59e-67 199
Msa0006880 AT5G25450.2 68.852 122 22 1 1 122 1 106 1.63e-54 166
Msa0006880 AT4G32470.2 77.000 100 23 0 1 100 1 100 8.51e-54 164
Msa0006880 AT5G25450.3 75.294 85 21 0 1 85 1 85 3.47e-43 137

Find 61 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTGCCTTTATAATTTA+TGG 0.035401 1_1:-9881637 Msa0006880:three_prime_UTR
ACTAAACCCAAGTCATGTTT+TGG 0.262731 1_1:-9881386 Msa0006880:three_prime_UTR
GTATTACGATTTGGATATTA+AGG 0.274133 1_1:-9885190 Msa0006880:CDS
TATTGGAATCATTTCTTGTT+TGG 0.281572 1_1:-9881586 Msa0006880:three_prime_UTR
AGCTTTGATGAATCCTTATA+TGG 0.292613 1_1:-9881725 Msa0006880:three_prime_UTR
ACCGTATTTGCGAAGACGTT+TGG 0.293147 1_1:+9885326 None:intergenic
GATATATACTTGTTGAGTTT+AGG 0.317531 1_1:+9881154 None:intergenic
GTATCTTCCTGAGGATCTTC+AGG 0.339636 1_1:-9885082 Msa0006880:intron
ATGGAAGGGTTCGTTGATAC+AGG 0.347740 1_1:+9881852 None:intergenic
GCTCTATCTTTCTTCCATCT+TGG 0.353908 1_1:+9881274 None:intergenic
GTATGATCCGTATTACGATT+TGG 0.362212 1_1:-9885199 Msa0006880:CDS
GTGCTGTAAACTTCCCTCTT+GGG 0.363610 1_1:-9881688 Msa0006880:three_prime_UTR
GGTGCTGTAAACTTCCCTCT+TGG 0.368585 1_1:-9881689 Msa0006880:three_prime_UTR
AGCGAGCGAGCGAGTATAAT+TGG 0.373004 1_1:-9885529 Msa0006880:five_prime_UTR
AAAATGTCGTGATTGCAATT+TGG 0.374270 1_1:-9881305 Msa0006880:three_prime_UTR
TCCAAACGTCTTCGCAAATA+CGG 0.376472 1_1:-9885327 Msa0006880:intron
TGACTTGGGTTTAGTAATTA+CGG 0.384123 1_1:+9881394 None:intergenic
ACTATTGTGGTAGAATGTTT+TGG 0.384621 1_1:-9881768 Msa0006880:three_prime_UTR
ATGCAAGCCATAAATTATAA+AGG 0.391641 1_1:+9881630 None:intergenic
GATACTACCCAATGCACTTA+TGG 0.397492 1_1:+9881833 None:intergenic
AAAAGCGTACTATCTCAAAC+AGG 0.400737 1_1:+9881243 None:intergenic
TTTGGTTGATGATGAAATCT+TGG 0.409251 1_1:-9881750 Msa0006880:three_prime_UTR
CGAGCATCAACAACCTCCTT+TGG 0.426514 1_1:+9885150 None:intergenic
ATCTTTCTTCCATCTTGGCA+TGG 0.434373 1_1:+9881279 None:intergenic
CGAGCAGAGCGTGAAGCATT+GGG 0.452428 1_1:-9881884 Msa0006880:CDS
AAACACCCCAAAACATGACT+TGG 0.463582 1_1:+9881379 None:intergenic
ACGAGCAGAGCGTGAAGCAT+TGG 0.467463 1_1:-9881885 Msa0006880:CDS
AGGAAGATACTCATGCTTCA+TGG 0.469418 1_1:+9885095 None:intergenic
TTAATATCCAAATCGTAATA+CGG 0.475035 1_1:+9885192 None:intergenic
AAAGATGGAGTGATTGTTCA+AGG 0.477184 1_1:-9881504 Msa0006880:three_prime_UTR
AGGCAATGCAAACACCATTC+AGG 0.479539 1_1:-9883987 Msa0006880:CDS
AACCCTTCCATAAGTGCATT+GGG 0.480215 1_1:-9881840 Msa0006880:exon
AGACTTACCAAAATAAAAGA+TGG 0.500296 1_1:-9881519 Msa0006880:three_prime_UTR
ATGATTCCAATAAAGACAAT+GGG 0.502666 1_1:+9881597 None:intergenic
GAACCCTTCCATAAGTGCAT+TGG 0.516854 1_1:-9881841 Msa0006880:exon
AATGATTCCAATAAAGACAA+TGG 0.521916 1_1:+9881596 None:intergenic
ACCATTCAGGAGCTACCTTC+AGG 0.525111 1_1:-9883974 Msa0006880:CDS
CATAAATTATAAAGGCAAGC+AGG 0.528208 1_1:+9881638 None:intergenic
TCCTGAAGGTAGCTCCTGAA+TGG 0.529425 1_1:+9883973 None:intergenic
GGCTTTGAATCGGCTTCCAA+AGG 0.532273 1_1:-9885166 Msa0006880:CDS
TTCTATTAGCGTGCGAAATG+TGG 0.537300 1_1:-9881451 Msa0006880:three_prime_UTR
ATATTAAGGAGGCTTTGAAT+CGG 0.539685 1_1:-9885176 Msa0006880:CDS
ATCCTGTAAAATAAAATTTG+TGG 0.540480 1_1:-9881338 Msa0006880:three_prime_UTR
TCCTGTAAAATAAAATTTGT+GGG 0.543317 1_1:-9881337 Msa0006880:three_prime_UTR
TGGAAGGGTTCGTTGATACA+GGG 0.545179 1_1:+9881853 None:intergenic
AAACCAACCTGAAGATCCTC+AGG 0.545207 1_1:+9885075 None:intergenic
GTTAAAATGTACTACTATTG+TGG 0.547187 1_1:-9881781 Msa0006880:three_prime_UTR
TTTGAATCGGCTTCCAAAGG+AGG 0.563776 1_1:-9885163 Msa0006880:CDS
CTACCCAATGCACTTATGGA+AGG 0.567459 1_1:+9881837 None:intergenic
AACACCCCAAAACATGACTT+GGG 0.568072 1_1:+9881380 None:intergenic
TTACGATTTGGATATTAAGG+AGG 0.584001 1_1:-9885187 Msa0006880:CDS
ATTTGGTGTCCATGCCAAGA+TGG 0.612707 1_1:-9881288 Msa0006880:three_prime_UTR
TACCCAATGCACTTATGGAA+GGG 0.614254 1_1:+9881838 None:intergenic
TTTATTAGAAAATGCCCAAG+AGG 0.624070 1_1:+9881674 None:intergenic
CAAAGGTCAGCATATCCTGA+AGG 0.627878 1_1:+9883959 None:intergenic
TTATTAGAAAATGCCCAAGA+GGG 0.630597 1_1:+9881675 None:intergenic
GGAAGGGTTCGTTGATACAG+GGG 0.637021 1_1:+9881854 None:intergenic
GCAGAGCGTGAAGCATTGGG+AGG 0.668632 1_1:-9881881 Msa0006880:CDS
TGTAAAATAAAATTTGTGGG+TGG 0.670217 1_1:-9881334 Msa0006880:three_prime_UTR
GAAGCATGAGTATCTTCCTG+AGG 0.684541 1_1:-9885091 Msa0006880:CDS
AAAGCGTACTATCTCAAACA+GGG 0.701837 1_1:+9881244 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTATTTTAATTTAAACT+AGG - chr1_1:9882297-9882316 Msa0006880:intron 10.0%
!!! TCTTATTTTAATTTAAACTA+GGG - chr1_1:9882298-9882317 Msa0006880:intron 10.0%
!! AACAAATGTTTAATAAAAAA+AGG + chr1_1:9882908-9882927 None:intergenic 10.0%
!! AAATACAATTTCACAAATTA+GGG + chr1_1:9881459-9881478 None:intergenic 15.0%
!!! AATACAAAATTGAATGTTTT+TGG - chr1_1:9881676-9881695 Msa0006880:three_prime_UTR 15.0%
!!! TGTTTTGATATAACATTATA+TGG - chr1_1:9882857-9882876 Msa0006880:intron 15.0%
!!! TATACAAATCTTTGAAAATA+AGG + chr1_1:9883302-9883321 None:intergenic 15.0%
!!! TTATTTTCAAAGATTTGTAT+AGG - chr1_1:9883301-9883320 Msa0006880:intron 15.0%
!!! CAATATTTTTGTAATTCATT+GGG - chr1_1:9883410-9883429 Msa0006880:intron 15.0%
!! TATTTAACATGTTAACTAAT+AGG - chr1_1:9884180-9884199 Msa0006880:intron 15.0%
!! ATTTAACATGTTAACTAATA+GGG - chr1_1:9884181-9884200 Msa0006880:intron 15.0%
!!! GAAATGATTTTATAATTGTT+TGG + chr1_1:9884298-9884317 None:intergenic 15.0%
!! ATATATATATATATGTAAGC+AGG + chr1_1:9885499-9885518 None:intergenic 15.0%
!! AAAAAACGAAATGAAGATTT+AGG + chr1_1:9881424-9881443 None:intergenic 20.0%
!! CAAATACAATTTCACAAATT+AGG + chr1_1:9881460-9881479 None:intergenic 20.0%
!!! TGTATTTGATTTGTGAAATT+AGG - chr1_1:9881472-9881491 Msa0006880:three_prime_UTR 20.0%
!! TTAATATCCAAATCGTAATA+CGG + chr1_1:9881523-9881542 None:intergenic 20.0%
!! TTTATTTCATTTCACATTTG+AGG - chr1_1:9882152-9882171 Msa0006880:intron 20.0%
!! GATAAGATTGAAGTATATTT+GGG + chr1_1:9882992-9883011 None:intergenic 20.0%
!!! TCATTTGATTACTATTTTCA+AGG + chr1_1:9883375-9883394 None:intergenic 20.0%
!! TCAAATGAAGAAGAAAAAAA+AGG - chr1_1:9883387-9883406 Msa0006880:intron 20.0%
!!! GCAATATTTTTGTAATTCAT+TGG - chr1_1:9883409-9883428 Msa0006880:intron 20.0%
!! TAAAATCTAACAAGTAAGAT+GGG + chr1_1:9884443-9884462 None:intergenic 20.0%
!! ATAAAATCTAACAAGTAAGA+TGG + chr1_1:9884444-9884463 None:intergenic 20.0%
!!! TTAGATTTTATTTTGATGAG+TGG - chr1_1:9884453-9884472 Msa0006880:intron 20.0%
!! TTAGTAGGTAAAATTTATCT+GGG + chr1_1:9884566-9884585 None:intergenic 20.0%
!!! AATGTGGAATATTATTTTAC+AGG - chr1_1:9885277-9885296 Msa0006880:intron 20.0%
!! ATCCTGTAAAATAAAATTTG+TGG - chr1_1:9885374-9885393 Msa0006880:CDS 20.0%
!! TCCTGTAAAATAAAATTTGT+GGG - chr1_1:9885375-9885394 Msa0006880:CDS 20.0%
!! TTAAACCGAGAGAATTTTTA+GGG - chr1_1:9881211-9881230 Msa0006880:intron 25.0%
!! GTATTACGATTTGGATATTA+AGG - chr1_1:9881522-9881541 Msa0006880:three_prime_UTR 25.0%
!! TGTGTTTGTATTGATAGAAA+TGG - chr1_1:9881766-9881785 Msa0006880:three_prime_UTR 25.0%
! AAATTTATTGAAAGTCCTTG+TGG - chr1_1:9882013-9882032 Msa0006880:intron 25.0%
! AATAGAATCAAAAAACGAGA+TGG - chr1_1:9882076-9882095 Msa0006880:intron 25.0%
! ATAGAATCAAAAAACGAGAT+GGG - chr1_1:9882077-9882096 Msa0006880:intron 25.0%
! GAAATAAAATGCATTTCACA+AGG + chr1_1:9882140-9882159 None:intergenic 25.0%
!!! GGATAGTTTTACAATAAAAG+TGG + chr1_1:9882409-9882428 None:intergenic 25.0%
! ACACATTCTCATTTATTGTT+TGG + chr1_1:9882430-9882449 None:intergenic 25.0%
! GAAGATCTAAATATCTTGTT+TGG - chr1_1:9882613-9882632 Msa0006880:intron 25.0%
!! TAAATATCTTGTTTGGTATG+TGG - chr1_1:9882620-9882639 Msa0006880:intron 25.0%
! ACTGTCAAACATATAAAACA+AGG + chr1_1:9882785-9882804 None:intergenic 25.0%
! GGATAAGATTGAAGTATATT+TGG + chr1_1:9882993-9883012 None:intergenic 25.0%
! CAATCTAAGCAATGTATTTA+AGG + chr1_1:9883014-9883033 None:intergenic 25.0%
!! TGCTACTATATTTGTTGAAA+TGG + chr1_1:9883066-9883085 None:intergenic 25.0%
! CAAATATAGTAGCATAATTG+AGG - chr1_1:9883072-9883091 Msa0006880:intron 25.0%
! AGCAAATATGAACTAACAAA+AGG + chr1_1:9883165-9883184 None:intergenic 25.0%
! TCAAAGATTTGTATAGGAAA+AGG - chr1_1:9883307-9883326 Msa0006880:intron 25.0%
!! GTAAAATTTGAAGGGTTTTT+GGG + chr1_1:9883531-9883550 None:intergenic 25.0%
! TTAGTTGAATAGAAAATGAG+AGG + chr1_1:9884232-9884251 None:intergenic 25.0%
! TTTCTATTCAACTAAATGAG+AGG - chr1_1:9884237-9884256 Msa0006880:intron 25.0%
! AAAATGGAACAAAAACAACA+AGG + chr1_1:9884337-9884356 None:intergenic 25.0%
!! TATTGCTATTACACTTAGTT+TGG + chr1_1:9884369-9884388 None:intergenic 25.0%
! CTTAGTAGGTAAAATTTATC+TGG + chr1_1:9884567-9884586 None:intergenic 25.0%
!!! GTAGCAAAAAGTGTTATTTT+TGG - chr1_1:9884730-9884749 Msa0006880:intron 25.0%
! GTTAAAATGTACTACTATTG+TGG - chr1_1:9884931-9884950 Msa0006880:intron 25.0%
! AAAAAAATGTGGTCCATATA+AGG + chr1_1:9885003-9885022 None:intergenic 25.0%
!!! TTATATGGACCACATTTTTT+TGG - chr1_1:9885002-9885021 Msa0006880:intron 25.0%
! ATGCAAGCCATAAATTATAA+AGG + chr1_1:9885085-9885104 None:intergenic 25.0%
!! ATTTTACCCATTGTCTTTAT+TGG - chr1_1:9885109-9885128 Msa0006880:CDS 25.0%
! ATGATTCCAATAAAGACAAT+GGG + chr1_1:9885118-9885137 None:intergenic 25.0%
! AATGATTCCAATAAAGACAA+TGG + chr1_1:9885119-9885138 None:intergenic 25.0%
! TATTGGAATCATTTCTTGTT+TGG - chr1_1:9885126-9885145 Msa0006880:CDS 25.0%
! AGACTTACCAAAATAAAAGA+TGG - chr1_1:9885193-9885212 Msa0006880:CDS 25.0%
!!! AATCACTCCATCTTTTATTT+TGG + chr1_1:9885203-9885222 None:intergenic 25.0%
!!! ACCCACAAATTTTATTTTAC+AGG + chr1_1:9885379-9885398 None:intergenic 25.0%
! TGTAAAATAAAATTTGTGGG+TGG - chr1_1:9885378-9885397 Msa0006880:CDS 25.0%
! GTTAAACCGAGAGAATTTTT+AGG - chr1_1:9881210-9881229 Msa0006880:intron 30.0%
GTACACAAAAAACTCAACAA+TGG - chr1_1:9881294-9881313 Msa0006880:three_prime_UTR 30.0%
TTGTAGATCCAAAGAAAAAC+TGG - chr1_1:9881335-9881354 Msa0006880:three_prime_UTR 30.0%
! TTACGATTTGGATATTAAGG+AGG - chr1_1:9881525-9881544 Msa0006880:three_prime_UTR 30.0%
!! ATATTAAGGAGGCTTTGAAT+CGG - chr1_1:9881536-9881555 Msa0006880:three_prime_UTR 30.0%
CTAGATGAAGCTTGATAAAT+TGG - chr1_1:9881726-9881745 Msa0006880:three_prime_UTR 30.0%
AAATTGGTTGAAAACTGTTG+TGG - chr1_1:9881742-9881761 Msa0006880:three_prime_UTR 30.0%
AATTGGTTGAAAACTGTTGT+GGG - chr1_1:9881743-9881762 Msa0006880:three_prime_UTR 30.0%
AATAGATAAACACATCCACA+AGG + chr1_1:9882031-9882050 None:intergenic 30.0%
TGGATGTGTTTATCTATTGA+CGG - chr1_1:9882033-9882052 Msa0006880:intron 30.0%
TGTTTATCTATTGACGGAAA+TGG - chr1_1:9882039-9882058 Msa0006880:intron 30.0%
AAAATAAGAAAAACTCCCAG+AGG + chr1_1:9882287-9882306 None:intergenic 30.0%
! TCATTTTGCTTTCTCCAATT+TGG - chr1_1:9882340-9882359 Msa0006880:intron 30.0%
! TCCAATTTGGAGGTATAAAA+AGG - chr1_1:9882353-9882372 Msa0006880:intron 30.0%
! TCCTTTTTATACCTCCAAAT+TGG + chr1_1:9882357-9882376 None:intergenic 30.0%
! GATTTTCTGTGAACATACTT+TGG - chr1_1:9882553-9882572 Msa0006880:intron 30.0%
! ATAAAACAAGGCACTTACAA+AGG + chr1_1:9882773-9882792 None:intergenic 30.0%
AGTAACTAATTGTGTGATTG+TGG - chr1_1:9882827-9882846 Msa0006880:intron 30.0%
GTAACTAATTGTGTGATTGT+GGG - chr1_1:9882828-9882847 Msa0006880:intron 30.0%
AAAAAGGCAATCAAGAAGTA+TGG + chr1_1:9882892-9882911 None:intergenic 30.0%
GCTTAGATTGTTAGAAATCT+TGG - chr1_1:9883024-9883043 Msa0006880:intron 30.0%
! TTCATATTTGCTAGAGTAGA+TGG - chr1_1:9883173-9883192 Msa0006880:intron 30.0%
TTAACAGGGTATATGACTAA+TGG - chr1_1:9883454-9883473 Msa0006880:intron 30.0%
TTAATACCGTTTACTTGTGT+GGG + chr1_1:9883495-9883514 None:intergenic 30.0%
TTTAATACCGTTTACTTGTG+TGG + chr1_1:9883496-9883515 None:intergenic 30.0%
CAAGTAAACGGTATTAAACA+TGG - chr1_1:9883498-9883517 Msa0006880:intron 30.0%
! GGTAAAATTTGAAGGGTTTT+TGG + chr1_1:9883532-9883551 None:intergenic 30.0%
AAAGTGAAACTTCTAGACTA+GGG + chr1_1:9883554-9883573 None:intergenic 30.0%
TAAAGTGAAACTTCTAGACT+AGG + chr1_1:9883555-9883574 None:intergenic 30.0%
TACATAGTTTCTGATGCATA+TGG - chr1_1:9883755-9883774 Msa0006880:intron 30.0%
ACATAGTTTCTGATGCATAT+GGG - chr1_1:9883756-9883775 Msa0006880:intron 30.0%
! TTTAGTAGAACTTTTGCACA+TGG - chr1_1:9883796-9883815 Msa0006880:intron 30.0%
TTGGATGCAGTTTAGATTTA+GGG - chr1_1:9883822-9883841 Msa0006880:intron 30.0%
GGAAATAGAAGAAAAGAAAG+TGG + chr1_1:9883852-9883871 None:intergenic 30.0%
TAGAAAAAACACCTAGATCA+AGG + chr1_1:9883899-9883918 None:intergenic 30.0%
AATTCAGAAGCAATAGCTTA+AGG + chr1_1:9883968-9883987 None:intergenic 30.0%
CACCATAAGAAATTTGTGAA+GGG - chr1_1:9884066-9884085 Msa0006880:intron 30.0%
ATCCCTTCACAAATTTCTTA+TGG + chr1_1:9884071-9884090 None:intergenic 30.0%
TTCATTGAATGGAATTCATG+TGG - chr1_1:9884517-9884536 Msa0006880:intron 30.0%
TCATTGAATGGAATTCATGT+GGG - chr1_1:9884518-9884537 Msa0006880:intron 30.0%
CATCACATATAGCAGTTATA+GGG + chr1_1:9884767-9884786 None:intergenic 30.0%
!!! GAAGCTATTTTGATTGGAAT+TGG - chr1_1:9884906-9884925 Msa0006880:intron 30.0%
! ACTATTGTGGTAGAATGTTT+TGG - chr1_1:9884944-9884963 Msa0006880:intron 30.0%
!! TTTGGTTGATGATGAAATCT+TGG - chr1_1:9884962-9884981 Msa0006880:intron 30.0%
! AGCTTTGATGAATCCTTATA+TGG - chr1_1:9884987-9885006 Msa0006880:intron 30.0%
TTTACAGCACCAAAAAAATG+TGG + chr1_1:9885014-9885033 None:intergenic 30.0%
TTATTAGAAAATGCCCAAGA+GGG + chr1_1:9885040-9885059 None:intergenic 30.0%
TTTATTAGAAAATGCCCAAG+AGG + chr1_1:9885041-9885060 None:intergenic 30.0%
! CTTGGGCATTTTCTAATAAA+TGG - chr1_1:9885041-9885060 Msa0006880:intron 30.0%
CATAAATTATAAAGGCAAGC+AGG + chr1_1:9885077-9885096 None:intergenic 30.0%
CTGCTTGCCTTTATAATTTA+TGG - chr1_1:9885075-9885094 Msa0006880:intron 30.0%
! TGACTTGGGTTTAGTAATTA+CGG + chr1_1:9885321-9885340 None:intergenic 30.0%
AAAATGTCGTGATTGCAATT+TGG - chr1_1:9885407-9885426 Msa0006880:exon 30.0%
TTCAGCCCTAAAAATTCTCT+CGG + chr1_1:9881219-9881238 None:intergenic 35.0%
GTATGATCCGTATTACGATT+TGG - chr1_1:9881513-9881532 Msa0006880:three_prime_UTR 35.0%
TTGATGTCTATACAACCACA+AGG - chr1_1:9882250-9882269 Msa0006880:intron 35.0%
! TTTTGCTTTCTCCAATTTGG+AGG - chr1_1:9882343-9882362 Msa0006880:intron 35.0%
CTATTTCATTGTACTGTCAC+TGG - chr1_1:9882453-9882472 Msa0006880:intron 35.0%
CCTGTCAAAAACAGATACAA+AGG + chr1_1:9882708-9882727 None:intergenic 35.0%
!!! CCTTTGTATCTGTTTTTGAC+AGG - chr1_1:9882705-9882724 Msa0006880:intron 35.0%
AAGACAATCAAGACAAGCAA+AGG + chr1_1:9882966-9882985 None:intergenic 35.0%
GAAAACAGAAATACAGACAC+AGG + chr1_1:9883231-9883250 None:intergenic 35.0%
!! CAGCAGAGTTTGTTTTCATT+GGG - chr1_1:9883337-9883356 Msa0006880:intron 35.0%
ACATATAGATGGGTCTTAAC+AGG - chr1_1:9883439-9883458 Msa0006880:intron 35.0%
CATATAGATGGGTCTTAACA+GGG - chr1_1:9883440-9883459 Msa0006880:intron 35.0%
TAATACCGTTTACTTGTGTG+GGG + chr1_1:9883494-9883513 None:intergenic 35.0%
GACTAGGGGTAAAATTTGAA+GGG + chr1_1:9883539-9883558 None:intergenic 35.0%
AGACTAGGGGTAAAATTTGA+AGG + chr1_1:9883540-9883559 None:intergenic 35.0%
AAGTGAAACTTCTAGACTAG+GGG + chr1_1:9883553-9883572 None:intergenic 35.0%
TGATTGCTATGTCTTTAGCA+GGG + chr1_1:9883586-9883605 None:intergenic 35.0%
ATGATTGCTATGTCTTTAGC+AGG + chr1_1:9883587-9883606 None:intergenic 35.0%
TGCTAAAGACATAGCAATCA+TGG - chr1_1:9883586-9883605 Msa0006880:intron 35.0%
GCTAAAGACATAGCAATCAT+GGG - chr1_1:9883587-9883606 Msa0006880:intron 35.0%
! ACTCTAACGCATTGATAAGT+TGG - chr1_1:9883710-9883729 Msa0006880:intron 35.0%
! AACGCATTGATAAGTTGGAT+TGG - chr1_1:9883715-9883734 Msa0006880:intron 35.0%
GTTGGATGCAGTTTAGATTT+AGG - chr1_1:9883821-9883840 Msa0006880:intron 35.0%
ATCAAGGATACACACATAGA+TGG + chr1_1:9883883-9883902 None:intergenic 35.0%
TATGTGTGTATCCTTGATCT+AGG - chr1_1:9883885-9883904 Msa0006880:intron 35.0%
ATAGCTTAAGGTCTTCAACT+GGG + chr1_1:9883956-9883975 None:intergenic 35.0%
AATAGCTTAAGGTCTTCAAC+TGG + chr1_1:9883957-9883976 None:intergenic 35.0%
GACACATAATTCTACCATAG+TGG + chr1_1:9884031-9884050 None:intergenic 35.0%
CCTTCACAAATTTCTTATGG+TGG + chr1_1:9884068-9884087 None:intergenic 35.0%
CCACCATAAGAAATTTGTGA+AGG - chr1_1:9884065-9884084 Msa0006880:intron 35.0%
! AGTTTGGATGGTGATGAAAA+TGG + chr1_1:9884353-9884372 None:intergenic 35.0%
! GCTATTACACTTAGTTTGGA+TGG + chr1_1:9884365-9884384 None:intergenic 35.0%
!!! TTTATTTTGATGAGTGGTGC+TGG - chr1_1:9884459-9884478 Msa0006880:intron 35.0%
AAGAGTGAGTGCTAAAAAGA+GGG + chr1_1:9884498-9884517 None:intergenic 35.0%
AAAGAGTGAGTGCTAAAAAG+AGG + chr1_1:9884499-9884518 None:intergenic 35.0%
CATTGAATGGAATTCATGTG+GGG - chr1_1:9884519-9884538 Msa0006880:intron 35.0%
TCAACATTCACTCTCTTAGT+AGG + chr1_1:9884581-9884600 None:intergenic 35.0%
GCATCACATATAGCAGTTAT+AGG + chr1_1:9884768-9884787 None:intergenic 35.0%
! CTTTTCAACCCACAATTTTC+AGG - chr1_1:9884794-9884813 Msa0006880:intron 35.0%
!!! TCGCTTGAAGCTATTTTGAT+TGG - chr1_1:9884900-9884919 Msa0006880:intron 35.0%
AAAGATGGAGTGATTGTTCA+AGG - chr1_1:9885208-9885227 Msa0006880:CDS 35.0%
! ACTAAACCCAAGTCATGTTT+TGG - chr1_1:9885326-9885345 Msa0006880:intron 35.0%
! CTAAACCCAAGTCATGTTTT+GGG - chr1_1:9885327-9885346 Msa0006880:intron 35.0%
! TAAACCCAAGTCATGTTTTG+GGG - chr1_1:9885328-9885347 Msa0006880:CDS 35.0%
! TTGCAATCACGACATTTTCA+GGG + chr1_1:9885405-9885424 None:intergenic 35.0%
! ATTGCAATCACGACATTTTC+AGG + chr1_1:9885406-9885425 None:intergenic 35.0%
AAAGCGTACTATCTCAAACA+GGG + chr1_1:9885471-9885490 None:intergenic 35.0%
! AAAAGCGTACTATCTCAAAC+AGG + chr1_1:9885472-9885491 None:intergenic 35.0%
TCCAAACGTCTTCGCAAATA+CGG - chr1_1:9881385-9881404 Msa0006880:three_prime_UTR 40.0%
AGGAAGATACTCATGCTTCA+TGG + chr1_1:9881620-9881639 None:intergenic 40.0%
CTTTCAATGGAATGTGTGTC+CGG + chr1_1:9881967-9881986 None:intergenic 40.0%
!! TGTAGCACTGACACTTTCAA+TGG + chr1_1:9881980-9881999 None:intergenic 40.0%
!! TGAAAGTGTCAGTGCTACAT+AGG - chr1_1:9881981-9882000 Msa0006880:intron 40.0%
!! GAAAGTGTCAGTGCTACATA+GGG - chr1_1:9881982-9882001 Msa0006880:intron 40.0%
AGCAAATGCTGTCTCAATTG+TGG - chr1_1:9882206-9882225 Msa0006880:intron 40.0%
AAGGTAGAGTTAGATCCTCT+GGG - chr1_1:9882269-9882288 Msa0006880:intron 40.0%
AGTGCAGACATAATCTCTAC+AGG - chr1_1:9882484-9882503 Msa0006880:intron 40.0%
CCAATGAAAACAAACTCTGC+TGG + chr1_1:9883339-9883358 None:intergenic 40.0%
!! CCAGCAGAGTTTGTTTTCAT+TGG - chr1_1:9883336-9883355 Msa0006880:intron 40.0%
AAGACCCATCTATATGTGCA+GGG + chr1_1:9883436-9883455 None:intergenic 40.0%
TAAGACCCATCTATATGTGC+AGG + chr1_1:9883437-9883456 None:intergenic 40.0%
! GAACTTTTGCACATGGAAGT+TGG - chr1_1:9883803-9883822 Msa0006880:intron 40.0%
! CACTGTCCAGTGTTGTTAAA+TGG - chr1_1:9883993-9884012 Msa0006880:intron 40.0%
! TGTCCAGTGTTGTTAAATGG+TGG - chr1_1:9883996-9884015 Msa0006880:intron 40.0%
TGACCACCATTTAACAACAC+TGG + chr1_1:9884002-9884021 None:intergenic 40.0%
! GTGTTGTTAAATGGTGGTCA+TGG - chr1_1:9884002-9884021 Msa0006880:intron 40.0%
AAAACCTGCCGTATAACCAA+TGG + chr1_1:9884111-9884130 None:intergenic 40.0%
! TTGGTTATACGGCAGGTTTT+TGG - chr1_1:9884111-9884130 Msa0006880:intron 40.0%
AGAGTGAGTGCTAAAAAGAG+GGG + chr1_1:9884497-9884516 None:intergenic 40.0%
GCACTCACTCTTTCATTGAA+TGG - chr1_1:9884506-9884525 Msa0006880:intron 40.0%
CCTCTTCACCTGAAAATTGT+GGG + chr1_1:9884805-9884824 None:intergenic 40.0%
!!! CCACAATTTTCAGGTGAAGA+GGG - chr1_1:9884803-9884822 Msa0006880:intron 40.0%
AACCCTTCCATAAGTGCATT+GGG - chr1_1:9884872-9884891 Msa0006880:intron 40.0%
TACCCAATGCACTTATGGAA+GGG + chr1_1:9884877-9884896 None:intergenic 40.0%
GATACTACCCAATGCACTTA+TGG + chr1_1:9884882-9884901 None:intergenic 40.0%
TTCTATTAGCGTGCGAAATG+TGG - chr1_1:9885261-9885280 Msa0006880:intron 40.0%
AACACCCCAAAACATGACTT+GGG + chr1_1:9885335-9885354 None:intergenic 40.0%
AAACACCCCAAAACATGACT+TGG + chr1_1:9885336-9885355 None:intergenic 40.0%
!!! AAGTCATGTTTTGGGGTGTT+TGG - chr1_1:9885335-9885354 Msa0006880:CDS 40.0%
ATCTTTCTTCCATCTTGGCA+TGG + chr1_1:9885436-9885455 None:intergenic 40.0%
GCTCTATCTTTCTTCCATCT+TGG + chr1_1:9885441-9885460 None:intergenic 40.0%
!!! CACTGATTTTATATGCGCAG+GGG + chr1_1:9885532-9885551 None:intergenic 40.0%
!!! GCACTGATTTTATATGCGCA+GGG + chr1_1:9885533-9885552 None:intergenic 40.0%
!!! TGCACTGATTTTATATGCGC+AGG + chr1_1:9885534-9885553 None:intergenic 40.0%
! GCAGCGAACCAGTTTTTCTT+TGG + chr1_1:9881346-9881365 None:intergenic 45.0%
ACCGTATTTGCGAAGACGTT+TGG + chr1_1:9881389-9881408 None:intergenic 45.0%
! TTTGAATCGGCTTCCAAAGG+AGG - chr1_1:9881549-9881568 Msa0006880:three_prime_UTR 45.0%
GAAGCATGAGTATCTTCCTG+AGG - chr1_1:9881621-9881640 Msa0006880:three_prime_UTR 45.0%
GTATCTTCCTGAGGATCTTC+AGG - chr1_1:9881630-9881649 Msa0006880:three_prime_UTR 45.0%
AAACCAACCTGAAGATCCTC+AGG + chr1_1:9881640-9881659 None:intergenic 45.0%
!! TGAGGATCTTCAGGTTGGTT+TGG - chr1_1:9881639-9881658 Msa0006880:three_prime_UTR 45.0%
AGACATGGACAGGTTTACGA+GGG - chr1_1:9881883-9881902 Msa0006880:CDS 45.0%
GAGGATCTAACTCTACCTTG+TGG + chr1_1:9882268-9882287 None:intergenic 45.0%
CAAGGTAGAGTTAGATCCTC+TGG - chr1_1:9882268-9882287 Msa0006880:intron 45.0%
ACAACAGTACACTGCACAAG+TGG + chr1_1:9882533-9882552 None:intergenic 45.0%
AGGCAATGCAAACACCATTC+AGG - chr1_1:9882725-9882744 Msa0006880:intron 45.0%
CAAAGGTCAGCATATCCTGA+AGG + chr1_1:9882756-9882775 None:intergenic 45.0%
ATGTGCCCCACACAAGTAAA+CGG - chr1_1:9883486-9883505 Msa0006880:intron 45.0%
GACATAGCAATCATGGGTCA+TGG - chr1_1:9883593-9883612 Msa0006880:intron 45.0%
ATGGCAGTTGATTGTGAGGA+AGG - chr1_1:9883612-9883631 Msa0006880:intron 45.0%
ATTGTGAGGAAGGATTCCAG+AGG - chr1_1:9883622-9883641 Msa0006880:intron 45.0%
GATACACACATAGATGGCAG+GGG + chr1_1:9883877-9883896 None:intergenic 45.0%
GGATACACACATAGATGGCA+GGG + chr1_1:9883878-9883897 None:intergenic 45.0%
AGGATACACACATAGATGGC+AGG + chr1_1:9883879-9883898 None:intergenic 45.0%
AACTGGGAGTGGTTCTCTAT+GGG + chr1_1:9883940-9883959 None:intergenic 45.0%
TTAAGGTCTTCAACTGGGAG+TGG + chr1_1:9883951-9883970 None:intergenic 45.0%
GAGTGAGTGCTAAAAAGAGG+GGG + chr1_1:9884496-9884515 None:intergenic 45.0%
TGTGGGGCTCATTTGTAGAA+TGG - chr1_1:9884535-9884554 Msa0006880:intron 45.0%
!!! CCCACAATTTTCAGGTGAAG+AGG - chr1_1:9884802-9884821 Msa0006880:intron 45.0%
CCCTCTTCACCTGAAAATTG+TGG + chr1_1:9884806-9884825 None:intergenic 45.0%
TGGAAGGGTTCGTTGATACA+GGG + chr1_1:9884862-9884881 None:intergenic 45.0%
ATGGAAGGGTTCGTTGATAC+AGG + chr1_1:9884863-9884882 None:intergenic 45.0%
GAACCCTTCCATAAGTGCAT+TGG - chr1_1:9884871-9884890 Msa0006880:intron 45.0%
CTACCCAATGCACTTATGGA+AGG + chr1_1:9884878-9884897 None:intergenic 45.0%
GTGCTGTAAACTTCCCTCTT+GGG - chr1_1:9885024-9885043 Msa0006880:intron 45.0%
!! ATTTGGTGTCCATGCCAAGA+TGG - chr1_1:9885424-9885443 Msa0006880:five_prime_UTR 45.0%
!!! AACATTTTTATAAATAAAAA+AGG + chr1_1:9883277-9883296 None:intergenic 5.0%
AGCGAGCGAGCGAGTATAAT+TGG - chr1_1:9881183-9881202 Msa0006880:three_prime_UTR 50.0%
!! GGCTTTGAATCGGCTTCCAA+AGG - chr1_1:9881546-9881565 Msa0006880:three_prime_UTR 50.0%
CGAGCATCAACAACCTCCTT+TGG + chr1_1:9881565-9881584 None:intergenic 50.0%
CTTCCTGAGGATCTTCAGGT+TGG - chr1_1:9881634-9881653 Msa0006880:three_prime_UTR 50.0%
CAGACATGGACAGGTTTACG+AGG - chr1_1:9881882-9881901 Msa0006880:CDS 50.0%
ACCATTCAGGAGCTACCTTC+AGG - chr1_1:9882738-9882757 Msa0006880:intron 50.0%
TCCTGAAGGTAGCTCCTGAA+TGG + chr1_1:9882742-9882761 None:intergenic 50.0%
TTGGGCCCTGCACATATAGA+TGG - chr1_1:9883428-9883447 Msa0006880:intron 50.0%
TGGGCCCTGCACATATAGAT+GGG - chr1_1:9883429-9883448 Msa0006880:intron 50.0%
ACTTGTGTGGGGCACATATG+TGG + chr1_1:9883483-9883502 None:intergenic 50.0%
GCTATGTCTTTAGCAGGGCT+TGG + chr1_1:9883581-9883600 None:intergenic 50.0%
GGTCATGGCAGTTGATTGTG+AGG - chr1_1:9883608-9883627 Msa0006880:intron 50.0%
CTCAAGGGTTGTTCAACCTC+TGG + chr1_1:9883641-9883660 None:intergenic 50.0%
! AACCCTTGAGCTGAGTACTG+TGG - chr1_1:9883651-9883670 Msa0006880:intron 50.0%
CTCCACAGTACTCAGCTCAA+GGG + chr1_1:9883656-9883675 None:intergenic 50.0%
TCTCCACAGTACTCAGCTCA+AGG + chr1_1:9883657-9883676 None:intergenic 50.0%
TACTGTGGAGACCCGATGTT+GGG - chr1_1:9883666-9883685 Msa0006880:intron 50.0%
TGGTATCATGCCCCAACATC+GGG + chr1_1:9883680-9883699 None:intergenic 50.0%
CTGGTATCATGCCCCAACAT+CGG + chr1_1:9883681-9883700 None:intergenic 50.0%
GGGCATGATACCAGCTGATA+TGG - chr1_1:9883687-9883706 Msa0006880:intron 50.0%
GCGTTAGAGTCCATATCAGC+TGG + chr1_1:9883700-9883719 None:intergenic 50.0%
CAACTGGGAGTGGTTCTCTA+TGG + chr1_1:9883941-9883960 None:intergenic 50.0%
TTGTGAAGGGATTCCCGTCA+TGG - chr1_1:9884079-9884098 Msa0006880:intron 50.0%
TGCCGTATAACCAATGGCAC+GGG + chr1_1:9884105-9884124 None:intergenic 50.0%
CTGCCGTATAACCAATGGCA+CGG + chr1_1:9884106-9884125 None:intergenic 50.0%
ACTGGACACTGACAGCATCA+TGG - chr1_1:9884152-9884171 Msa0006880:intron 50.0%
GGAAGGGTTCGTTGATACAG+GGG + chr1_1:9884861-9884880 None:intergenic 50.0%
! GGTGCTGTAAACTTCCCTCT+TGG - chr1_1:9885023-9885042 Msa0006880:intron 50.0%
GCATGTGCTCGACACAGACA+TGG - chr1_1:9881868-9881887 Msa0006880:CDS 55.0%
TGCTCGACACAGACATGGAC+AGG - chr1_1:9881873-9881892 Msa0006880:CDS 55.0%
CACGTGTGTCAGTGTCGTGT+CGG - chr1_1:9881933-9881952 Msa0006880:intron 55.0%
GTACTGTGGAGACCCGATGT+TGG - chr1_1:9883665-9883684 Msa0006880:intron 55.0%
ACTGTGGAGACCCGATGTTG+GGG - chr1_1:9883667-9883686 Msa0006880:intron 55.0%
CACACATAGATGGCAGGGGA+TGG + chr1_1:9883873-9883892 None:intergenic 55.0%
GGTGGTCATGGTAGCCACTA+TGG - chr1_1:9884014-9884033 Msa0006880:intron 55.0%
! GGCCCGTGCCATTGGTTATA+CGG - chr1_1:9884100-9884119 Msa0006880:intron 55.0%
! CGTGCCATTGGTTATACGGC+AGG - chr1_1:9884104-9884123 Msa0006880:intron 55.0%
TCAGTGTCCAGTGCTGTCGT+TGG + chr1_1:9884144-9884163 None:intergenic 55.0%
ACGAGCAGAGCGTGAAGCAT+TGG - chr1_1:9884827-9884846 Msa0006880:intron 55.0%
! CGAGCAGAGCGTGAAGCATT+GGG - chr1_1:9884828-9884847 Msa0006880:intron 55.0%
! GTGTCAGTGTCGTGTCGGTG+TGG - chr1_1:9881938-9881957 Msa0006880:intron 60.0%
! TGTCGTGTCGGTGTGGACAC+CGG - chr1_1:9881945-9881964 Msa0006880:intron 60.0%
ACCAATGGCACGGGCCATGA+CGG + chr1_1:9884096-9884115 None:intergenic 60.0%
CCAGTGCTGTCGTTGGCAGA+AGG + chr1_1:9884137-9884156 None:intergenic 60.0%
CCTTCTGCCAACGACAGCAC+TGG - chr1_1:9884134-9884153 Msa0006880:intron 60.0%
!! GCAGAGCGTGAAGCATTGGG+AGG - chr1_1:9884831-9884850 Msa0006880:intron 60.0%
CCAATGGCACGGGCCATGAC+GGG + chr1_1:9884095-9884114 None:intergenic 65.0%
CCCGTCATGGCCCGTGCCAT+TGG - chr1_1:9884092-9884111 Msa0006880:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9881165 9885569 9881165 ID=Msa0006880;Name=Msa0006880
chr1_1 mRNA 9881165 9885569 9881165 ID=Msa0006880-mRNA-1;Parent=Msa0006880;Name=Msa0006880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=148|1|1|1|0.5|0.6|5|657|122
chr1_1 exon 9881165 9881227 9881165 ID=Msa0006880-mRNA-1:exon:3554;Parent=Msa0006880-mRNA-1
chr1_1 exon 9881256 9881918 9881256 ID=Msa0006880-mRNA-1:exon:3553;Parent=Msa0006880-mRNA-1
chr1_1 exon 9883960 9884007 9883960 ID=Msa0006880-mRNA-1:exon:3552;Parent=Msa0006880-mRNA-1
chr1_1 exon 9885083 9885240 9885083 ID=Msa0006880-mRNA-1:exon:3551;Parent=Msa0006880-mRNA-1
chr1_1 exon 9885328 9885569 9885328 ID=Msa0006880-mRNA-1:exon:3550;Parent=Msa0006880-mRNA-1
chr1_1 five_prime_UTR 9885422 9885569 9885422 ID=Msa0006880-mRNA-1:five_prime_utr;Parent=Msa0006880-mRNA-1
chr1_1 CDS 9885328 9885421 9885328 ID=Msa0006880-mRNA-1:cds;Parent=Msa0006880-mRNA-1
chr1_1 CDS 9885083 9885240 9885083 ID=Msa0006880-mRNA-1:cds;Parent=Msa0006880-mRNA-1
chr1_1 CDS 9883960 9884007 9883960 ID=Msa0006880-mRNA-1:cds;Parent=Msa0006880-mRNA-1
chr1_1 CDS 9881850 9881918 9881850 ID=Msa0006880-mRNA-1:cds;Parent=Msa0006880-mRNA-1
chr1_1 three_prime_UTR 9881256 9881849 9881256 ID=Msa0006880-mRNA-1:three_prime_utr;Parent=Msa0006880-mRNA-1
chr1_1 three_prime_UTR 9881165 9881227 9881165 ID=Msa0006880-mRNA-1:three_prime_utr;Parent=Msa0006880-mRNA-1
Gene Sequence

>Msa0006880

ATGGCGTCTTTGCTACAAGCGATTGTAGATCCAAAGAAAAACTGGTTCGCTGCTCAACACATGAAAGCTGTTTCCAAACGTCTTCGCAAATACGGTTTACGATATGATGATCTGTATGATCCGTATTACGATTTGGATATTAAGGAGGCTTTGAATCGGCTTCCAAAGGAGGTTGTTGATGCTCGTCATGCTCGTCTTAAGCGTGCTATTGATCTTTCCATGAAGCATGAGTATCTTCCTGAGGATCTTCAGGCAATGCAAACACCATTCAGGAGCTACCTTCAGGATATGCTGACCTTTGTGAAGAGGGAACGAGCAGAGCGTGAAGCATTGGGAGGTTTGCCCCTGTATCAACGAACCCTTCCATAA

Protein sequence

>Msa0006880

MASLLQAIVDPKKNWFAAQHMKAVSKRLRKYGLRYDDLYDPYYDLDIKEALNRLPKEVVDARHARLKRAIDLSMKHEYLPEDLQAMQTPFRSYLQDMLTFVKRERAEREALGGLPLYQRTLP*