AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1429050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429050 MtrunA17_Chr5g0405421 82.740 562 16 5 1 483 1 560 0.0 919
Msa1429050 MtrunA17_Chr5g0444171 37.719 456 194 6 92 466 86 532 4.64e-103 318
Msa1429050 MtrunA17_Chr8g0374701 35.076 593 255 13 1 476 1 580 2.36e-102 318
Msa1429050 MtrunA17_Chr4g0045261 40.564 461 189 7 88 467 127 583 3.76e-101 315
Msa1429050 MtrunA17_Chr5g0441691 37.199 457 189 8 92 463 62 505 1.08e-100 311
Msa1429050 MtrunA17_Chr1g0157131 36.522 460 202 6 98 476 74 524 1.38e-99 309
Msa1429050 MtrunA17_Chr1g0170281 35.065 539 255 8 13 468 33 559 2.36e-99 310
Msa1429050 MtrunA17_Chr5g0402551 38.961 462 197 7 87 467 123 580 4.13e-98 307
Msa1429050 MtrunA17_Chr3g0127571 39.958 473 193 8 88 481 128 588 1.44e-97 305
Msa1429050 MtrunA17_Chr4g0074811 36.623 456 199 6 92 466 85 531 5.35e-97 302
Msa1429050 MtrunA17_Chr0c02g0489761 37.310 461 191 8 92 467 72 519 1.20e-96 301
Msa1429050 MtrunA17_Chr8g0387671 36.052 466 200 7 98 482 66 514 1.49e-96 301
Msa1429050 MtrunA17_Chr1g0176751 33.874 555 247 11 28 471 25 570 4.32e-95 299
Msa1429050 MtrunA17_Chr3g0098951 36.052 466 196 8 92 467 78 531 1.72e-94 296
Msa1429050 MtrunA17_Chr5g0397101 35.654 474 209 8 77 464 41 504 2.68e-94 295
Msa1429050 MtrunA17_Chr3g0131181 36.481 466 204 8 98 481 29 484 3.48e-94 295
Msa1429050 MtrunA17_Chr7g0276111 38.229 463 200 7 88 470 134 590 1.24e-93 295
Msa1429050 MtrunA17_Chr7g0242561 33.868 499 239 7 51 467 9 498 1.20e-92 291
Msa1429050 MtrunA17_Chr7g0256001 39.056 466 200 6 83 467 126 588 1.36e-92 293
Msa1429050 MtrunA17_Chr8g0385341 36.026 458 202 7 98 473 30 478 7.41e-92 288
Msa1429050 MtrunA17_Chr7g0267751 33.708 534 253 11 11 464 60 572 3.10e-89 284
Msa1429050 MtrunA17_Chr1g0200601 35.491 448 200 6 97 464 29 467 1.82e-88 279
Msa1429050 MtrunA17_Chr1g0173541 35.022 454 204 7 96 467 50 494 1.12e-87 278
Msa1429050 MtrunA17_Chr1g0176421 36.758 438 185 7 92 449 158 583 1.51e-87 281
Msa1429050 MtrunA17_Chr5g0448721 34.513 452 207 6 98 469 96 538 1.56e-87 278
Msa1429050 MtrunA17_Chr4g0059951 31.776 535 261 8 15 467 3 515 2.21e-85 273
Msa1429050 MtrunA17_Chr7g0257751 34.205 459 207 7 93 467 53 500 7.70e-85 271
Msa1429050 MtrunA17_Chr4g0033371 31.947 457 216 8 94 467 69 513 1.96e-75 246
Msa1429050 MtrunA17_Chr4g0074791 32.456 456 208 7 92 466 89 525 1.61e-73 241
Msa1429050 MtrunA17_Chr7g0267771 32.530 332 139 5 94 347 84 408 6.81e-50 177
Msa1429050 MtrunA17_Chr5g0444191 54.472 123 51 2 177 299 63 180 2.15e-39 141
Msa1429050 MtrunA17_Chr8g0355131 27.226 393 203 11 136 460 127 504 1.59e-34 135
Msa1429050 MtrunA17_Chr1g0203881 29.771 262 106 3 97 282 40 299 8.01e-32 127
Msa1429050 MtrunA17_Chr3g0132591 28.417 278 127 4 71 282 89 360 3.45e-30 122
Msa1429050 MtrunA17_Chr1g0190131 34.043 188 89 3 136 291 89 273 1.78e-29 116
Msa1429050 MtrunA17_Chr7g0274941 31.183 186 90 4 136 286 96 278 7.46e-25 104
Msa1429050 MtrunA17_Chr2g0304111 26.692 266 112 7 97 285 22 281 1.45e-21 97.1
Msa1429050 MtrunA17_Chr8g0346071 26.515 264 113 7 97 285 16 273 2.49e-21 96.3
Msa1429050 MtrunA17_Chr4g0001331 27.820 266 108 8 97 285 19 277 3.27e-21 96.3
Msa1429050 MtrunA17_Chr4g0013131 25.912 274 119 7 96 292 10 276 3.95e-21 95.9
Msa1429050 MtrunA17_Chr6g0453681 28.788 264 108 6 94 283 15 272 5.19e-21 95.9
Msa1429050 MtrunA17_Chr6g0468751 28.626 262 107 6 94 281 15 270 6.36e-21 95.5
Msa1429050 MtrunA17_Chr3g0140631 26.415 265 120 7 98 291 37 297 2.14e-20 91.7
Msa1429050 MtrunA17_Chr5g0441011 26.236 263 111 7 98 283 13 269 6.33e-20 92.0
Msa1429050 MtrunA17_Chr5g0441771 37.500 104 45 1 248 351 18 101 3.08e-19 82.8
Msa1429050 MtrunA17_Chr8g0351491 25.385 260 119 7 98 286 16 271 4.44e-19 87.4
Msa1429050 MtrunA17_Chr1g0150321 25.850 294 125 10 97 304 12 298 5.38e-19 89.0
Msa1429050 MtrunA17_Chr4g0072831 27.477 222 120 7 97 283 9 224 2.06e-18 86.3
Msa1429050 MtrunA17_Chr4g0069301 30.601 183 85 5 139 285 108 284 2.55e-18 87.4
Msa1429050 MtrunA17_Chr3g0132671 31.492 181 85 4 138 285 130 304 2.81e-18 87.4
Msa1429050 MtrunA17_Chr3g0114511 24.615 325 146 10 97 331 31 346 1.76e-17 84.7
Msa1429050 MtrunA17_Chr1g0166281 29.870 154 96 5 318 465 1 148 2.63e-17 79.0
Msa1429050 MtrunA17_Chr3g0125381 27.072 181 95 5 139 286 34 210 3.27e-17 80.5
Msa1429050 MtrunA17_Chr8g0353621 25.781 256 115 8 98 282 10 261 6.33e-17 80.9
Msa1429050 MtrunA17_Chr3g0131061 27.222 180 92 4 139 281 82 259 1.69e-15 77.8
Msa1429050 MtrunA17_Chr1g0188171 27.922 154 99 5 318 465 1 148 8.71e-15 71.6
Msa1429050 MtrunA17_Chr6g0460211 27.632 152 98 4 318 463 1 146 6.29e-14 69.3
Msa1429050 MtrunA17_Chr5g0440931 27.632 152 98 4 318 463 1 146 7.34e-14 68.9
Msa1429050 MtrunA17_Chr7g0254731 27.632 152 98 4 318 463 1 146 2.63e-13 67.4
Msa1429050 MtrunA17_Chr3g0093271 26.974 152 99 4 318 463 52 197 9.75e-13 67.0
Msa1429050 MtrunA17_Chr7g0274101 29.114 158 92 5 318 465 1 148 1.32e-12 65.5
Msa1429050 MtrunA17_Chr1g0185001 27.632 152 97 4 318 463 1 145 5.32e-12 63.5
Msa1429050 MtrunA17_Chr8g0366401 28.758 153 100 3 322 468 10 159 6.55e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1429050 AT2G17890.1 64.437 568 104 7 1 476 1 562 0.0 702
Msa1429050 AT5G66210.1 64.376 553 85 5 1 477 1 517 0.0 694
Msa1429050 AT5G66210.2 64.376 553 85 5 1 477 1 517 0.0 694
Msa1429050 AT4G36070.1 62.319 552 105 5 1 476 1 525 0.0 671
Msa1429050 AT4G36070.2 62.319 552 105 5 1 476 1 525 0.0 669
Msa1429050 AT5G66210.3 63.116 507 75 5 1 431 1 471 0.0 622
Msa1429050 AT5G66210.5 63.116 507 75 5 1 431 1 471 0.0 622
Msa1429050 AT5G66210.6 59.333 450 71 5 1 374 1 414 4.06e-180 511
Msa1429050 AT5G66210.4 59.333 450 71 5 1 374 1 414 4.06e-180 511
Msa1429050 AT3G10660.2 36.735 539 234 9 29 480 128 646 2.73e-105 327
Msa1429050 AT3G10660.1 36.735 539 234 9 29 480 128 646 2.73e-105 327
Msa1429050 AT5G12180.1 35.046 545 239 11 1 464 1 511 4.84e-105 323
Msa1429050 AT5G04870.1 36.090 532 247 8 21 468 69 591 7.40e-103 320
Msa1429050 AT5G19360.1 37.199 457 197 7 92 467 62 509 4.84e-102 315
Msa1429050 AT1G50700.1 38.359 451 188 6 98 467 73 514 5.03e-102 315
Msa1429050 AT3G50530.1 40.129 466 194 7 83 467 133 594 1.43e-100 314
Msa1429050 AT4G21940.1 35.450 567 239 16 1 466 1 541 1.96e-100 312
Msa1429050 AT3G20410.2 37.916 451 190 6 98 467 91 532 2.03e-100 312
Msa1429050 AT3G20410.1 37.916 451 190 6 98 467 91 532 2.03e-100 312
Msa1429050 AT4G21940.2 35.450 567 239 16 1 466 1 541 3.38e-100 312
Msa1429050 AT4G23650.1 37.748 453 192 6 96 467 76 519 5.86e-100 310
Msa1429050 AT4G04720.2 37.856 457 193 8 92 467 74 520 1.59e-97 304
Msa1429050 AT4G04720.1 37.856 457 193 8 92 467 74 520 1.59e-97 304
Msa1429050 AT1G61950.1 37.118 458 197 6 92 467 92 540 2.22e-97 304
Msa1429050 AT1G50700.2 36.268 477 188 7 98 467 73 540 1.11e-96 302
Msa1429050 AT1G49580.1 38.806 469 203 6 88 475 140 605 8.20e-96 302
Msa1429050 AT5G23580.1 36.645 453 198 7 92 464 16 459 1.36e-94 295
Msa1429050 AT1G76040.2 37.037 459 198 7 93 470 107 555 2.40e-94 296
Msa1429050 AT1G50700.3 39.152 401 159 5 98 422 73 464 6.29e-93 290
Msa1429050 AT3G19100.1 38.829 461 197 7 88 467 134 590 2.34e-92 293
Msa1429050 AT1G35670.1 36.465 447 195 6 98 464 26 463 3.40e-92 289
Msa1429050 AT4G21940.3 35.714 518 211 15 1 422 1 492 1.25e-91 288
Msa1429050 AT3G51850.1 34.298 484 226 7 66 467 23 496 1.29e-91 288
Msa1429050 AT4G09570.1 36.018 447 197 6 98 464 25 462 2.00e-91 287
Msa1429050 AT4G04740.4 39.737 380 180 7 136 476 149 518 3.87e-91 287
Msa1429050 AT4G04740.6 39.737 380 180 7 136 476 149 518 3.87e-91 287
Msa1429050 AT4G04740.5 39.737 380 180 7 136 476 149 518 3.87e-91 287
Msa1429050 AT4G04740.3 39.737 380 180 7 136 476 149 518 3.87e-91 287
Msa1429050 AT4G04740.1 39.737 380 180 7 136 476 149 518 3.87e-91 287
Msa1429050 AT4G04740.7 39.737 380 180 7 136 476 149 518 3.87e-91 287
Msa1429050 AT2G38910.1 35.619 452 202 6 98 469 134 576 7.13e-91 288
Msa1429050 AT2G41140.1 36.842 475 209 8 80 467 99 569 1.39e-88 282
Msa1429050 AT3G56760.1 37.310 461 204 7 88 467 114 570 5.12e-88 281
Msa1429050 AT4G38230.4 34.956 452 205 6 98 469 24 466 2.12e-87 276
Msa1429050 AT4G38230.3 34.956 452 205 6 98 469 24 466 2.12e-87 276
Msa1429050 AT4G38230.2 34.956 452 205 6 98 469 54 496 3.74e-87 276
Msa1429050 AT2G17290.1 34.279 458 210 7 98 473 85 533 7.57e-87 276
Msa1429050 AT2G17290.2 34.279 458 210 7 98 473 85 533 7.57e-87 276
Msa1429050 AT1G76040.3 37.745 408 168 6 93 424 107 504 5.23e-86 273
Msa1429050 AT3G51850.2 35.068 442 197 7 66 429 23 452 5.28e-86 273
Msa1429050 AT2G46700.1 37.744 461 201 7 88 468 133 587 1.14e-85 275
Msa1429050 AT4G35310.2 34.061 458 211 7 98 473 97 545 1.44e-85 274
Msa1429050 AT4G35310.1 34.061 458 211 7 98 473 97 545 1.44e-85 274
Msa1429050 AT5G12480.1 33.478 460 210 7 93 467 54 502 3.35e-84 270
Msa1429050 AT4G04740.2 40.227 353 162 7 136 449 149 491 1.20e-83 268
Msa1429050 AT5G24430.1 36.887 469 209 8 83 470 126 588 1.46e-83 270
Msa1429050 AT4G04700.1 34.498 458 209 7 93 467 23 472 2.52e-83 266
Msa1429050 AT2G41860.2 32.500 520 238 9 35 467 3 496 1.68e-82 265
Msa1429050 AT2G41860.1 32.500 520 238 9 35 467 3 496 2.03e-82 265
Msa1429050 AT5G19450.2 32.604 457 218 5 93 467 52 500 3.35e-82 264
Msa1429050 AT5G19450.1 32.604 457 218 5 93 467 52 500 3.35e-82 264
Msa1429050 AT2G46700.2 38.958 403 199 5 100 468 17 406 1.22e-81 259
Msa1429050 AT2G46700.3 38.958 403 199 5 100 468 17 406 1.22e-81 259
Msa1429050 AT4G04695.1 35.153 458 206 9 93 467 23 472 3.21e-81 260
Msa1429050 AT1G74740.1 33.333 498 234 10 53 467 19 501 6.29e-81 261
Msa1429050 AT3G57530.1 33.333 459 212 8 92 467 57 504 1.21e-80 260
Msa1429050 AT2G31500.1 32.314 458 212 7 97 467 65 511 2.92e-77 253
Msa1429050 AT3G49370.1 34.773 463 217 7 87 470 131 587 4.32e-77 253
Msa1429050 AT1G76040.1 42.140 299 158 5 177 470 29 317 1.59e-75 240
Msa1429050 AT1G76040.4 42.140 299 158 5 177 470 29 317 1.59e-75 240
Msa1429050 AT3G50530.2 46.809 282 145 3 188 467 347 625 1.92e-75 249
Msa1429050 AT3G50530.2 36.913 149 48 3 83 186 133 280 3.11e-18 88.2
Msa1429050 AT1G18890.1 33.333 453 211 6 97 467 62 505 3.01e-75 246
Msa1429050 AT4G04710.1 33.548 465 210 8 92 466 30 485 4.80e-74 242
Msa1429050 AT4G04710.2 33.624 458 206 8 92 466 30 472 6.61e-74 241
Msa1429050 AT5G12480.2 35.854 357 177 5 154 467 61 408 2.42e-73 238
Msa1429050 AT4G04710.4 33.405 467 210 9 92 466 30 487 4.42e-73 239
Msa1429050 AT3G51850.3 33.333 402 188 5 49 374 6 403 5.35e-73 237
Msa1429050 AT2G35890.2 33.081 396 182 6 85 403 122 511 1.15e-72 239
Msa1429050 AT2G35890.1 33.081 396 182 6 85 403 122 511 1.15e-72 239
Msa1429050 AT4G38230.1 41.259 286 157 3 188 469 44 322 1.47e-72 233
Msa1429050 AT4G04710.3 37.097 372 178 7 136 466 102 458 2.64e-71 234
Msa1429050 AT3G57530.2 34.604 341 145 3 92 356 57 395 2.84e-65 217
Msa1429050 AT1G12580.1 31.111 270 108 3 97 290 43 310 8.85e-35 137
Msa1429050 AT1G12680.1 29.137 278 125 4 71 282 84 355 4.94e-30 122
Msa1429050 AT1G08650.1 35.165 182 83 3 142 290 102 281 5.94e-29 115
Msa1429050 AT1G30270.1 27.138 269 113 7 97 288 30 292 4.34e-24 105
Msa1429050 AT1G30270.2 27.138 269 113 7 97 288 30 292 5.61e-24 105
Msa1429050 AT1G08650.2 34.706 170 76 3 142 278 102 269 1.51e-23 100
Msa1429050 AT5G25110.1 27.652 264 107 8 97 283 42 298 2.38e-22 100
Msa1429050 AT5G10930.1 26.792 265 109 7 97 283 11 268 7.34e-22 98.2
Msa1429050 AT3G04530.1 32.203 177 87 4 142 286 98 273 1.97e-21 94.4
Msa1429050 AT1G01140.2 26.792 265 113 6 98 285 19 279 2.96e-21 96.7
Msa1429050 AT2G30360.1 27.239 268 111 6 97 286 20 281 3.07e-21 96.3
Msa1429050 AT1G30270.3 30.645 186 87 6 139 288 16 195 6.61e-21 94.7
Msa1429050 AT3G01090.2 28.846 260 105 7 98 283 42 295 2.33e-20 94.4
Msa1429050 AT1G01140.1 26.415 265 112 7 98 285 19 277 2.36e-20 94.0
Msa1429050 AT1G01140.3 26.415 265 112 7 98 285 19 277 2.38e-20 94.0
Msa1429050 AT3G01090.3 28.846 260 105 7 98 283 19 272 2.45e-20 94.4
Msa1429050 AT3G01090.1 28.846 260 105 7 98 283 19 272 2.45e-20 94.4
Msa1429050 AT5G39440.1 25.275 273 120 7 98 297 19 280 2.62e-20 94.0
Msa1429050 AT1G29230.1 25.940 266 113 7 97 285 73 331 3.47e-20 94.0
Msa1429050 AT4G30960.1 27.547 265 108 9 97 284 23 280 9.83e-20 92.0
Msa1429050 AT3G29160.3 28.077 260 107 6 98 283 20 273 1.48e-19 90.5
Msa1429050 AT3G29160.1 28.077 260 107 6 98 283 20 273 5.53e-19 90.1
Msa1429050 AT3G29160.2 28.077 260 107 6 98 283 20 273 5.53e-19 90.1
Msa1429050 AT2G45490.1 25.092 271 128 8 98 297 22 288 1.57e-18 86.3
Msa1429050 AT2G26980.3 23.267 404 207 12 97 403 13 410 1.78e-18 88.2
Msa1429050 AT2G38490.1 27.574 272 113 9 97 291 27 291 2.22e-18 87.8
Msa1429050 AT2G26980.4 23.267 404 207 12 97 403 23 420 2.56e-18 87.8
Msa1429050 AT2G25880.1 25.095 263 122 7 98 289 25 283 8.16e-18 84.3
Msa1429050 AT2G25880.4 25.095 263 122 7 98 289 38 296 9.70e-18 84.3
Msa1429050 AT2G25880.3 25.095 263 122 7 98 289 86 344 2.69e-17 83.6
Msa1429050 AT4G32830.1 25.095 263 126 7 98 291 31 291 5.02e-17 82.0
Msa1429050 AT5G58380.1 24.436 266 117 7 97 285 11 269 1.63e-16 82.4
Msa1429050 AT4G37010.2 29.932 147 91 4 329 469 31 171 1.46e-15 75.1
Msa1429050 AT4G37010.1 29.932 147 91 4 329 469 27 167 2.03e-15 74.3
Msa1429050 AT2G27030.3 27.500 160 104 4 318 471 1 154 2.11e-14 72.0
Msa1429050 AT2G25880.2 25.328 229 132 6 98 289 25 251 5.04e-14 72.4
Msa1429050 AT3G22930.1 30.405 148 91 5 322 463 28 169 5.82e-14 70.5
Msa1429050 AT4G14640.1 28.000 150 96 5 320 463 4 147 6.18e-14 69.7
Msa1429050 AT3G56800.1 27.632 152 98 4 318 463 1 146 6.56e-14 69.7
Msa1429050 AT2G41110.1 27.632 152 98 4 318 463 1 146 6.56e-14 69.7
Msa1429050 AT2G27030.1 27.632 152 98 4 318 463 1 146 6.56e-14 69.7
Msa1429050 AT3G50360.1 28.378 148 94 5 329 470 27 168 7.26e-14 70.1
Msa1429050 AT5G21274.1 27.632 152 98 4 318 463 1 146 8.68e-14 69.3
Msa1429050 AT3G43810.1 27.632 152 98 4 318 463 1 146 8.68e-14 69.3
Msa1429050 AT2G41090.1 29.560 159 95 5 318 469 1 149 2.15e-13 69.3
Msa1429050 AT1G66410.1 26.974 152 99 4 318 463 1 146 3.08e-13 67.8
Msa1429050 AT5G37780.1 26.974 152 99 4 318 463 1 146 3.08e-13 67.8
Msa1429050 AT3G43810.2 27.632 152 98 4 318 463 1 146 3.91e-13 68.9
Msa1429050 AT2G43290.1 29.677 155 96 5 328 472 64 215 4.05e-12 66.2
Msa1429050 AT1G18530.1 29.801 151 96 4 324 468 2 148 8.03e-12 63.9
Msa1429050 AT2G41110.2 25.610 164 98 5 318 463 1 158 2.99e-11 62.4
Msa1429050 AT4G14640.2 29.134 127 78 5 343 463 9 129 5.79e-11 60.8

Find 133 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATGATGATTCTTCTTC+TGG 0.087186 tig0026434:+6427 None:intergenic
GCACAGGAGATCATCTTAAA+AGG 0.219330 tig0026434:+892 None:intergenic
TTCTTCTATTCTATCCAAAA+TGG 0.245641 tig0026434:-575 Msa1429050:three_prime_UTR
AACTTAAATTATATTGAATA+TGG 0.258326 tig0026434:-797 Msa1429050:three_prime_UTR
CTTAAAAGTCTCCTGAATTC+TGG 0.264973 tig0026434:+1029 None:intergenic
GACTTCCGTTTCAACACTTC+TGG 0.287482 tig0026434:+3965 None:intergenic
TTGTTGGGTCATGGACAATT+TGG 0.288939 tig0026434:-6300 Msa1429050:CDS
CAAACTGCCGCATGTTGTTT+AGG 0.291679 tig0026434:+2460 None:intergenic
TTGTTGACGGATTCCGTTTA+CGG 0.291809 tig0026434:+6535 None:intergenic
CTTTCCATCTTTGTCAATAT+CGG 0.302823 tig0026434:+1061 None:intergenic
TACGGAACAAGCCTGATTTC+CGG 0.312294 tig0026434:-3665 Msa1429050:CDS
ATACTCCATACATCTGATTC+AGG 0.313024 tig0026434:+3938 None:intergenic
TTTGTGGGAGACGGCCATTT+TGG 0.314883 tig0026434:-3892 Msa1429050:CDS
ACCCTGTTTGGATTGGCTTC+AGG 0.325271 tig0026434:-699 Msa1429050:three_prime_UTR
TAGTTACACATTACATGTTA+TGG 0.328740 tig0026434:+607 None:intergenic
CATGGTTTCCGCCGGAAATC+AGG 0.334285 tig0026434:+3654 None:intergenic
TCCTCAGTCTTATCCCAAAA+TGG 0.342848 tig0026434:+3878 None:intergenic
TTGATGATGATTCTTCTTCT+GGG 0.356316 tig0026434:+6428 None:intergenic
TTTAGGACAGATATATCAAT+TGG 0.370204 tig0026434:+2477 None:intergenic
GTTGGTGTTGATAAATCTAA+TGG 0.377050 tig0026434:-6267 Msa1429050:CDS
AGATCAGCTTACCAGAATTC+AGG 0.379096 tig0026434:-1040 Msa1429050:CDS
TAGAGTGTATAGACCCTGTT+TGG 0.382161 tig0026434:-711 Msa1429050:three_prime_UTR
ATTGAAACAATTTGCATTGA+GGG 0.394547 tig0026434:-2424 Msa1429050:intron
TCAGTGTCATTTACATGGTT+TGG 0.399228 tig0026434:-4485 Msa1429050:CDS
TCTTCTACAAAGGTTGTTAG+TGG 0.400286 tig0026434:-6591 Msa1429050:CDS
CACGGCGGCGCCGACAGCGG+CGG 0.401963 tig0026434:-6493 Msa1429050:CDS
TGACCGTTGCTGCCACTTGT+CGG 0.405708 tig0026434:+1753 None:intergenic
CGCCGCTGTCGGCGCCGCCG+TGG 0.406324 tig0026434:+6494 None:intergenic
TACTTTACATGTGCATCAAT+TGG 0.420658 tig0026434:-1788 Msa1429050:CDS
AGAATCATCATCAACATCAT+AGG 0.429261 tig0026434:-6419 Msa1429050:CDS
TTCTGCTTCGCCGCCGCTGT+CGG 0.431290 tig0026434:+6483 None:intergenic
CTTGGGAAATTGTTGGGTCA+TGG 0.431665 tig0026434:-6309 Msa1429050:CDS
TACCTGAAGCCAATCCAAAC+AGG 0.432128 tig0026434:+697 None:intergenic
ACAACAATGATAACCGTAAA+CGG 0.439168 tig0026434:-6548 Msa1429050:CDS
AAGATGCCGCCGTGGTTGTA+AGG 0.443119 tig0026434:-4528 Msa1429050:CDS
AGTGAACTTGACCTCACCTC+TGG 0.443872 tig0026434:+4445 None:intergenic
TGCAATCTCTTGCCATTCCA+TGG 0.446108 tig0026434:-828 Msa1429050:three_prime_UTR
GAAGTGTTGAAACGGAAGTC+AGG 0.446630 tig0026434:-3962 Msa1429050:CDS
TCCTTCGATGACGTAGAGTT+GGG 0.447157 tig0026434:+973 None:intergenic
GAACTTACTTGTTTAGTATC+CGG 0.448169 tig0026434:+4707 None:intergenic
AGATCCTCGGGCAAGATTAA+CGG 0.454512 tig0026434:-3580 Msa1429050:CDS
GTTGAAAGAATCCCGTGTAT+TGG 0.454593 tig0026434:-2075 Msa1429050:CDS
CACATCATATGCAGGTCTTA+CGG 0.458216 tig0026434:-3683 Msa1429050:intron
TGAGAAATTTGACATAGATA+AGG 0.458341 tig0026434:-1719 Msa1429050:CDS
GACTGAGGATGGTATCTTCA+AGG 0.458505 tig0026434:-3864 Msa1429050:CDS
TCACATACATATTGCTTTGT+GGG 0.459172 tig0026434:-3907 Msa1429050:CDS
AACCACGGCGGCGCCGACAG+CGG 0.462663 tig0026434:-6496 Msa1429050:CDS
CAAACCATTCTGAGTTCCTC+TGG 0.463445 tig0026434:+1682 None:intergenic
AGATATATCAATTGGAATCT+CGG 0.473615 tig0026434:+2485 None:intergenic
TGTATAGACCCTGTTTGGAT+TGG 0.474116 tig0026434:-706 Msa1429050:three_prime_UTR
GTTGATTCCGTGGTTGTTGA+CGG 0.474973 tig0026434:+6522 None:intergenic
GGCAAGATTAACGGCTGCTC+AGG 0.475765 tig0026434:-3571 Msa1429050:CDS
CGGGATTCTTTCAACTTCCA+CGG 0.477884 tig0026434:+2083 None:intergenic
ATCCTTCGATGACGTAGAGT+TGG 0.479740 tig0026434:+972 None:intergenic
GCATTACTTATGGTTGGCCA+TGG 0.480416 tig0026434:+3636 None:intergenic
TGATATTTACAGCACATCCA+TGG 0.485240 tig0026434:-2530 Msa1429050:intron
TACTCCAGAGGAACTCAGAA+TGG 0.488220 tig0026434:-1686 Msa1429050:intron
CACAGGAGATCATCTTAAAA+GGG 0.496481 tig0026434:+893 None:intergenic
ACGGTTATCATTGTTGTTTG+TGG 0.502090 tig0026434:+6554 None:intergenic
GCAGCTCAGTGTCATTTACA+TGG 0.502325 tig0026434:-4490 Msa1429050:CDS
CAGGCCCTGAATCAGATGTA+TGG 0.503892 tig0026434:-3943 Msa1429050:CDS
CAAGTGGCAGCAACGGTCAC+AGG 0.507672 tig0026434:-1749 Msa1429050:CDS
CTGATTTCCGGCGGAAACCA+TGG 0.509164 tig0026434:-3653 Msa1429050:CDS
AGTTTCAGAGTTCCATGGAA+TGG 0.510077 tig0026434:+816 None:intergenic
CATAGGTTAAAAGACAAAAC+AGG 0.510784 tig0026434:-6402 Msa1429050:CDS
TCTCCTCCTTCTCTAACCCA+TGG 0.520704 tig0026434:+2513 None:intergenic
ATCACATACATATTGCTTTG+TGG 0.521561 tig0026434:-3908 Msa1429050:CDS
GGCGGCGAAGCAGAAACAAA+CGG 0.522528 tig0026434:-6475 Msa1429050:CDS
AAATTTGACATAGATAAGGA+TGG 0.522800 tig0026434:-1715 Msa1429050:CDS
TTTACATGTGCATCAATTGG+AGG 0.524461 tig0026434:-1785 Msa1429050:CDS
TACTCCATACATCTGATTCA+GGG 0.533810 tig0026434:+3939 None:intergenic
ATTTAAGTTTCAGAGTTCCA+TGG 0.534473 tig0026434:+811 None:intergenic
CAATTTGGTTATACTTATGT+TGG 0.538577 tig0026434:-6285 Msa1429050:CDS
ATTGTTGGTAAAAGATCCTC+GGG 0.539145 tig0026434:-3592 Msa1429050:CDS
TTTGCAGCATTACTTATGGT+TGG 0.544195 tig0026434:+3630 None:intergenic
CAGATTGACAGCAACACAGA+TGG 0.546135 tig0026434:-1841 Msa1429050:CDS
GATTGAAACAATTTGCATTG+AGG 0.548938 tig0026434:-2425 Msa1429050:CDS
CACGGAATCAACAGCAACCA+CGG 0.549875 tig0026434:-6511 Msa1429050:CDS
ACATATTGCTTTGTGGGAGA+CGG 0.551692 tig0026434:-3901 Msa1429050:CDS
GAATCAGATGTATGGAGTAT+TGG 0.553750 tig0026434:-3935 Msa1429050:CDS
AATTGTTGGTAAAAGATCCT+CGG 0.555130 tig0026434:-3593 Msa1429050:CDS
GAAGCCGATATTGACAAAGA+TGG 0.555955 tig0026434:-1065 Msa1429050:CDS
CATCCATGGGTTAGAGAAGG+AGG 0.556794 tig0026434:-2516 Msa1429050:CDS
TAGTCTTGAAGAGATGAGAC+AGG 0.557378 tig0026434:-2221 Msa1429050:intron
CGGCATCTTTCTCAGTATAA+CGG 0.560775 tig0026434:+4542 None:intergenic
TCGCACCAGAAGTGTTGAAA+CGG 0.562183 tig0026434:-3970 Msa1429050:CDS
TTTATTAGGTTATGCGAAGG+TGG 0.566134 tig0026434:-4742 Msa1429050:intron
GATATTTACAGCACATCCAT+GGG 0.572368 tig0026434:-2529 Msa1429050:intron
CGTGGTTGCTGTTGATTCCG+TGG 0.575237 tig0026434:+6512 None:intergenic
TTCCTCGAGCAGAGGATCGA+TGG 0.576634 tig0026434:+1085 None:intergenic
TGATTCAAACGAGAGAGTGT+TGG 0.578002 tig0026434:-920 Msa1429050:three_prime_UTR
GGCTTCAACACAATCTGCAC+AGG 0.579949 tig0026434:+876 None:intergenic
GGGATTCTTTCAACTTCCAC+GGG 0.581407 tig0026434:+2084 None:intergenic
GTGTTAAAAGCTTAGTCTAG+AGG 0.588978 tig0026434:-755 Msa1429050:three_prime_UTR
GGTTCTAGACATGTTCCTTG+TGG 0.589064 tig0026434:-6381 Msa1429050:CDS
TAAAGTAGCTGCTACAAACT+CGG 0.593573 tig0026434:+1804 None:intergenic
TACTTTATTAGGTTATGCGA+AGG 0.595183 tig0026434:-4745 Msa1429050:intron
TGGTTGGCCATGGTTTCCGC+CGG 0.595352 tig0026434:+3646 None:intergenic
TCAGTTTGATGCAATAGATG+TGG 0.605404 tig0026434:-2260 Msa1429050:CDS
AATATGGCGTCGTCTCGCAA+AGG 0.607127 tig0026434:-781 Msa1429050:three_prime_UTR
GCCCAACTCTACGTCATCGA+AGG 0.607386 tig0026434:-974 Msa1429050:CDS
ACTCCGACAAGTGGCAGCAA+CGG 0.608487 tig0026434:-1756 Msa1429050:CDS
TTCCATCGATCCTCTGCTCG+AGG 0.609417 tig0026434:-1087 Msa1429050:CDS
TGGCTAGCACACTTAACGAA+GGG 0.612737 tig0026434:-2303 Msa1429050:CDS
GCACATCCATGGGTTAGAGA+AGG 0.618750 tig0026434:-2519 Msa1429050:CDS
ACGGAATCCGTCAACAACCA+CGG 0.618750 tig0026434:-6529 Msa1429050:CDS
GCTTAGATGTGTTTCAGAGG+CGG 0.621865 tig0026434:-946 Msa1429050:three_prime_UTR
AATTTGACATAGATAAGGAT+GGG 0.621957 tig0026434:-1714 Msa1429050:CDS
CTAGCTTAGATGTGTTTCAG+AGG 0.622053 tig0026434:-949 Msa1429050:exon
AAGGTGGAGAACTACTAGAC+CGG 0.629818 tig0026434:-4726 Msa1429050:CDS
ATATCGGCTTCCTCGAGCAG+AGG 0.629872 tig0026434:+1077 None:intergenic
CTTGCAATATCTCCAATACA+CGG 0.630159 tig0026434:+2063 None:intergenic
ATGGGTTAGAGAAGGAGGAG+AGG 0.640326 tig0026434:-2511 Msa1429050:CDS
CTCTTGCTAAAGATCTCCCG+TGG 0.641688 tig0026434:-2100 Msa1429050:CDS
TACTGAGAAAGATGCCGCCG+TGG 0.643392 tig0026434:-4536 Msa1429050:CDS
TTGCAATATCTCCAATACAC+GGG 0.645052 tig0026434:+2064 None:intergenic
ACCTGAAGCCAATCCAAACA+GGG 0.646091 tig0026434:+698 None:intergenic
GGCTAGCACACTTAACGAAG+GGG 0.648293 tig0026434:-2302 Msa1429050:CDS
AGGAACATGACTCCGACAAG+TGG 0.654427 tig0026434:-1765 Msa1429050:CDS
TGTATTGGAGATATTGCAAG+CGG 0.661649 tig0026434:-2060 Msa1429050:intron
GGTTGTAAGGCAGATGCTGA+AGG 0.665253 tig0026434:-4515 Msa1429050:CDS
GCGACATGAAGCCAGAGGTG+AGG 0.666615 tig0026434:-4456 Msa1429050:intron
TATCTGTCCTAAACAACATG+CGG 0.667622 tig0026434:-2467 Msa1429050:CDS
GGATGGGTATATTACTCCAG+AGG 0.671648 tig0026434:-1698 Msa1429050:CDS
TTGGCTAGCACACTTAACGA+AGG 0.676206 tig0026434:-2304 Msa1429050:CDS
CAGCATCTGCCTTACAACCA+CGG 0.677207 tig0026434:+4519 None:intergenic
CTGCAGAGCATATATCACAA+TGG 0.682620 tig0026434:+855 None:intergenic
GGAACAAGCCTGATTTCCGG+CGG 0.694537 tig0026434:-3662 Msa1429050:CDS
GCAGCCGTTAATCTTGCCCG+AGG 0.704131 tig0026434:+3576 None:intergenic
ACATCGCGACATGAAGCCAG+AGG 0.708034 tig0026434:-4461 Msa1429050:CDS
TGAGGATGGTATCTTCAAGG+AGG 0.730235 tig0026434:-3861 Msa1429050:intron
GGAATCAACAGCAACCACGG+CGG 0.754861 tig0026434:-6508 Msa1429050:CDS
CATCTGCCTTACAACCACGG+CGG 0.799342 tig0026434:+4522 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCTATCTATTTTTTTA+AGG - tig0026434:3320-3339 Msa1429050:intron 10.0%
!!! AAATTTATACATTTAGAATA+TGG + tig0026434:4492-4511 None:intergenic 10.0%
!! AACTTAAATTATATTGAATA+TGG - tig0026434:6315-6334 Msa1429050:CDS 10.0%
!!! TTTTTTTTTTTTTTCCATTT+TGG + tig0026434:6554-6573 None:intergenic 10.0%
!! TGGAAAAAAAAAAAAAAAAA+AGG - tig0026434:6557-6576 Msa1429050:CDS 10.0%
!!! CAATATTTAGATTTTGTTAT+TGG - tig0026434:979-998 Msa1429050:CDS 15.0%
!!! ATCAATTTTTGTTATGTTTT+TGG - tig0026434:1058-1077 Msa1429050:CDS 15.0%
!! TGAAAAAAATAAGGAAAATA+GGG + tig0026434:2194-2213 None:intergenic 15.0%
!! ATGAAAAAAATAAGGAAAAT+AGG + tig0026434:2195-2214 None:intergenic 15.0%
!!! TTTTTTTTTTTTGAAGGAAA+AGG + tig0026434:3366-3385 None:intergenic 15.0%
!!! AAGACTTTTTTTTTTTTTGA+AGG + tig0026434:3372-3391 None:intergenic 15.0%
!!! TTAATGCAAAGTTTTAAAAA+AGG + tig0026434:3915-3934 None:intergenic 15.0%
!!! TTTATGTTTTTCTTCTACAA+AGG - tig0026434:511-530 Msa1429050:three_prime_UTR 20.0%
!!! TTAGATTTTGTTATTGGTTT+TGG - tig0026434:985-1004 Msa1429050:CDS 20.0%
!!! TTGTTATGTTTTTGGATTTT+TGG - tig0026434:1066-1085 Msa1429050:CDS 20.0%
!!! TGTTATGTTTTTGGATTTTT+GGG - tig0026434:1067-1086 Msa1429050:CDS 20.0%
!!! TATTGTTAAGTTGATTGTAA+AGG - tig0026434:1138-1157 Msa1429050:intron 20.0%
!!! ATTGTTAAGTTGATTGTAAA+GGG - tig0026434:1139-1158 Msa1429050:intron 20.0%
!!! GCATCTATGTTTTTTTTTTT+TGG - tig0026434:1192-1211 Msa1429050:intron 20.0%
!!! CTATGTTTTTTTTTTTTGGT+TGG - tig0026434:1196-1215 Msa1429050:intron 20.0%
!! AAAACCATATTACAATCAAA+TGG + tig0026434:1315-1334 None:intergenic 20.0%
!!! TGTAATATGGTTTTTAATTG+TGG - tig0026434:1321-1340 Msa1429050:intron 20.0%
!! AAATAACTTAAAAGATTTGG+AGG + tig0026434:1434-1453 None:intergenic 20.0%
!! GTCAAATAACTTAAAAGATT+TGG + tig0026434:1437-1456 None:intergenic 20.0%
!! AAATTATGAATAAATGTGGT+TGG - tig0026434:1465-1484 Msa1429050:intron 20.0%
!!! TTCATTTAAAATCAAATAGC+AGG + tig0026434:1902-1921 None:intergenic 20.0%
!! AAAAAAATAAGGAAAATAGG+GGG + tig0026434:2192-2211 None:intergenic 20.0%
!! GAAAAAAATAAGGAAAATAG+GGG + tig0026434:2193-2212 None:intergenic 20.0%
!! TGAGAACAATGAAAAAAATA+AGG + tig0026434:2203-2222 None:intergenic 20.0%
!! TATTTAACTGCAATAAATTC+TGG - tig0026434:2238-2257 Msa1429050:CDS 20.0%
!!! TAAATTCTGGATTTATCTTT+TGG - tig0026434:2251-2270 Msa1429050:CDS 20.0%
!! TATTAATTCATGTCCTTTAA+AGG + tig0026434:3400-3419 None:intergenic 20.0%
!! TCTCATAATAAGAAATAAGT+TGG + tig0026434:3581-3600 None:intergenic 20.0%
!!! ACTTATTTCTTATTATGAGA+AGG - tig0026434:3581-3600 Msa1429050:CDS 20.0%
!! ATGAAAAATAATTGAACACT+CGG + tig0026434:3805-3824 None:intergenic 20.0%
!! GGAGAAATAGAAAAAATTTA+AGG - tig0026434:4060-4079 Msa1429050:intron 20.0%
!!! TTTATCTCTTTTTAGATAAC+TGG + tig0026434:4180-4199 None:intergenic 20.0%
!! AGTTATCTAAAAAGAGATAA+AGG - tig0026434:4179-4198 Msa1429050:intron 20.0%
!! GTTATCTAAAAAGAGATAAA+GGG - tig0026434:4180-4199 Msa1429050:intron 20.0%
!!! AGTTTCTTCTAATAGAATTT+TGG - tig0026434:4316-4335 Msa1429050:intron 20.0%
!! AATTCTATTAGAAGAAACTA+CGG + tig0026434:4315-4334 None:intergenic 20.0%
!!! AGTTTCTTCTAATAGAATTT+TGG - tig0026434:4316-4335 Msa1429050:intron 20.0%
!!! AAATTTTAGAAGTGGAATAA+GGG + tig0026434:5132-5151 None:intergenic 20.0%
!!! TTTCTTTCAAATTTTAGAAG+TGG + tig0026434:5140-5159 None:intergenic 20.0%
!! AAATTTGAAAGAAAGTTTGT+TGG - tig0026434:5146-5165 Msa1429050:intron 20.0%
!! TTTATCATAAAAACTGTTCA+GGG + tig0026434:5476-5495 None:intergenic 20.0%
!!! TTTTATCATAAAAACTGTTC+AGG + tig0026434:5477-5496 None:intergenic 20.0%
!! AATAACACAAACATTGATAA+GGG + tig0026434:5558-5577 None:intergenic 20.0%
!!! AGCTAATATAATTTTCTGTT+TGG - tig0026434:5977-5996 Msa1429050:intron 20.0%
!! TTTGATAAGAGATTTTCTCT+TGG - tig0026434:785-804 Msa1429050:three_prime_UTR 25.0%
!! TTGATAAGAGATTTTCTCTT+GGG - tig0026434:786-805 Msa1429050:three_prime_UTR 25.0%
! CAATTTGGTTATACTTATGT+TGG - tig0026434:827-846 Msa1429050:three_prime_UTR 25.0%
!!! TTGTTATTGGTTTTGGTTAT+TGG - tig0026434:992-1011 Msa1429050:CDS 25.0%
!!! TGTTATTGGTTTTGGTTATT+GGG - tig0026434:993-1012 Msa1429050:CDS 25.0%
!!! ATGAGATTTTGTTTTTGTGA+TGG - tig0026434:1029-1048 Msa1429050:CDS 25.0%
!!! TTTTAAGTTATTTGACGTTG+TGG - tig0026434:1441-1460 Msa1429050:intron 25.0%
!! TTTAAGTTATTTGACGTTGT+GGG - tig0026434:1442-1461 Msa1429050:intron 25.0%
! TGGGAAATTATGAATAAATG+TGG - tig0026434:1461-1480 Msa1429050:intron 25.0%
! AAAATGGAATAAAAAGAGAG+GGG + tig0026434:1594-1613 None:intergenic 25.0%
! GAAAATGGAATAAAAAGAGA+GGG + tig0026434:1595-1614 None:intergenic 25.0%
! AGAAAATGGAATAAAAAGAG+AGG + tig0026434:1596-1615 None:intergenic 25.0%
! AGAAACTGGAAAAAAGAAAA+TGG + tig0026434:1610-1629 None:intergenic 25.0%
! AAGATATTGAAAGAACTTAC+AGG - tig0026434:2086-2105 Msa1429050:CDS 25.0%
! TTCATATGTGTACATAGTTA+TGG - tig0026434:2151-2170 Msa1429050:intron 25.0%
! AAAAAATAAGGAAAATAGGG+GGG + tig0026434:2191-2210 None:intergenic 25.0%
! GCTTGACAATTTACTTTATT+AGG - tig0026434:2356-2375 Msa1429050:intron 25.0%
! AGAACATGTCTAATACATAA+GGG + tig0026434:2892-2911 None:intergenic 25.0%
! AAGAACATGTCTAATACATA+AGG + tig0026434:2893-2912 None:intergenic 25.0%
!!! GAATTTTCTGTTTGTTATGT+TGG - tig0026434:3297-3316 Msa1429050:intron 25.0%
!! AAAGTCTTTGTTTCCTTTAA+AGG - tig0026434:3384-3403 Msa1429050:intron 25.0%
!! AGATTTTGTGAAGAAATTGT+TGG - tig0026434:3505-3524 Msa1429050:intron 25.0%
!!! CGACAAATGTAATCATTTTT+AGG + tig0026434:3635-3654 None:intergenic 25.0%
!!! CTCTCTCTTCATTTTTAAAA+AGG + tig0026434:3748-3767 None:intergenic 25.0%
! TTCGTTATTAAAAGACATGT+TGG + tig0026434:3959-3978 None:intergenic 25.0%
! TGCGAATTATTAAAGTGAAA+AGG - tig0026434:4026-4045 Msa1429050:intron 25.0%
! GCGAATTATTAAAGTGAAAA+GGG - tig0026434:4027-4046 Msa1429050:intron 25.0%
! AGAAAAAATTTAAGGAACCT+AGG - tig0026434:4068-4087 Msa1429050:intron 25.0%
!!! AAAAGAGATAAAGGGTATTT+TGG - tig0026434:4188-4207 Msa1429050:intron 25.0%
!!! AATTTTGGTTCTTTCAGATT+TGG - tig0026434:4397-4416 Msa1429050:intron 25.0%
!!! ATTTTGGTTCTTTCAGATTT+GGG - tig0026434:4398-4417 Msa1429050:intron 25.0%
! AGATATATCAATTGGAATCT+CGG + tig0026434:4630-4649 None:intergenic 25.0%
!! TTTAGGACAGATATATCAAT+TGG + tig0026434:4638-4657 None:intergenic 25.0%
! ATTGAAACAATTTGCATTGA+GGG - tig0026434:4688-4707 Msa1429050:intron 25.0%
!!! CAAATTTTAGAAGTGGAATA+AGG + tig0026434:5133-5152 None:intergenic 25.0%
! TGAGAAATTTGACATAGATA+AGG - tig0026434:5393-5412 Msa1429050:intron 25.0%
! AAATTTGACATAGATAAGGA+TGG - tig0026434:5397-5416 Msa1429050:intron 25.0%
! AATTTGACATAGATAAGGAT+GGG - tig0026434:5398-5417 Msa1429050:intron 25.0%
! ATAACACAAACATTGATAAG+GGG + tig0026434:5557-5576 None:intergenic 25.0%
! GAATAACACAAACATTGATA+AGG + tig0026434:5559-5578 None:intergenic 25.0%
! TTCAAAATGATCTTCGAAAT+TGG - tig0026434:5744-5763 Msa1429050:intron 25.0%
! TTAAAAATGATGTACACTGA+TGG + tig0026434:6457-6476 None:intergenic 25.0%
!!! TACATCATTTTTAAGTGTCA+GGG - tig0026434:6463-6482 Msa1429050:CDS 25.0%
! TAGTTACACATTACATGTTA+TGG + tig0026434:6508-6527 None:intergenic 25.0%
! TTCTTCTATTCTATCCAAAA+TGG - tig0026434:6537-6556 Msa1429050:CDS 25.0%
ACAACAATGATAACCGTAAA+CGG - tig0026434:564-583 Msa1429050:three_prime_UTR 30.0%
!! TTGATGATGATTCTTCTTCT+GGG + tig0026434:687-706 None:intergenic 30.0%
AGAATCATCATCAACATCAT+AGG - tig0026434:693-712 Msa1429050:three_prime_UTR 30.0%
CATAGGTTAAAAGACAAAAC+AGG - tig0026434:710-729 Msa1429050:three_prime_UTR 30.0%
! ATTTTCTCTTGGGAAATTGT+TGG - tig0026434:796-815 Msa1429050:three_prime_UTR 30.0%
! TTTTCTCTTGGGAAATTGTT+GGG - tig0026434:797-816 Msa1429050:three_prime_UTR 30.0%
!! GTTGGTGTTGATAAATCTAA+TGG - tig0026434:845-864 Msa1429050:three_prime_UTR 30.0%
GTAGACTTTGCTCAAATTAT+TGG - tig0026434:1226-1245 Msa1429050:intron 30.0%
CAAGCCATTTGATTGTAATA+TGG - tig0026434:1308-1327 Msa1429050:intron 30.0%
TGGGAAATTATGAATAAACG+TGG - tig0026434:1367-1386 Msa1429050:intron 30.0%
ATTATGAATAAACGTGGTAG+AGG - tig0026434:1373-1392 Msa1429050:intron 30.0%
TTATTGTTGTGATGCAGTTA+AGG - tig0026434:1499-1518 Msa1429050:intron 30.0%
TAGTTAGAATAAACCCACTT+GGG - tig0026434:1694-1713 Msa1429050:CDS 30.0%
! TAGAAAGAGCTCTAGTATAT+AGG + tig0026434:1947-1966 None:intergenic 30.0%
!!! GAATCAATCATTGACTTTTG+TGG - tig0026434:2018-2037 Msa1429050:intron 30.0%
! AAAACTGAACCACATTTTCA+TGG + tig0026434:2112-2131 None:intergenic 30.0%
TATTGCAGTTAAATACTGCT+TGG + tig0026434:2233-2252 None:intergenic 30.0%
! ATTCTGGATTTATCTTTTGG+CGG - tig0026434:2254-2273 Msa1429050:CDS 30.0%
TACTTTATTAGGTTATGCGA+AGG - tig0026434:2367-2386 Msa1429050:intron 30.0%
GAACTTACTTGTTTAGTATC+CGG + tig0026434:2408-2427 None:intergenic 30.0%
ACAAGTAAGTTCTGTTTAGT+TGG - tig0026434:2416-2435 Msa1429050:intron 30.0%
!!! TGGTTTTTTCCTTTTCTAGT+TGG - tig0026434:2436-2455 Msa1429050:CDS 30.0%
!! AAAAGTAAGTTCTGAGTACA+AGG + tig0026434:2522-2541 None:intergenic 30.0%
ACTGGAATATTGAAGCAATA+TGG - tig0026434:2687-2706 Msa1429050:intron 30.0%
AAGAGGTTTCAAGATATTGT+TGG - tig0026434:3105-3124 Msa1429050:intron 30.0%
ATCACATACATATTGCTTTG+TGG - tig0026434:3204-3223 Msa1429050:intron 30.0%
TCACATACATATTGCTTTGT+GGG - tig0026434:3205-3224 Msa1429050:intron 30.0%
AGGAGGTAACTTAATTCTTA+TGG - tig0026434:3268-3287 Msa1429050:intron 30.0%
! ATCTTTTGCAGCATTACTTA+TGG + tig0026434:3489-3508 None:intergenic 30.0%
! AATTGTTGGTAAAAGATCCT+CGG - tig0026434:3519-3538 Msa1429050:intron 30.0%
TAAAGTGAAAAGGGAAAGAA+AGG - tig0026434:4036-4055 Msa1429050:intron 30.0%
!! GTCATTTTCGAAATTAACAC+AGG - tig0026434:4213-4232 Msa1429050:intron 30.0%
CATCAGTACAACTAAACATT+AGG + tig0026434:4557-4576 None:intergenic 30.0%
GATTGAAACAATTTGCATTG+AGG - tig0026434:4687-4706 Msa1429050:intron 30.0%
AGACACATTAATTCAGTTCA+AGG - tig0026434:4716-4735 Msa1429050:CDS 30.0%
!!! CTTGTTTGATGTTGATTTTC+TGG - tig0026434:4763-4782 Msa1429050:intron 30.0%
!!! ATGTTGATTTTCTGGTTACT+TGG - tig0026434:4771-4790 Msa1429050:intron 30.0%
! AGTGGTGTGATTTGATTTAT+GGG + tig0026434:4920-4939 None:intergenic 30.0%
! AAGTGGTGTGATTTGATTTA+TGG + tig0026434:4921-4940 None:intergenic 30.0%
AGTAATCACTAACAGAAAAG+TGG + tig0026434:4938-4957 None:intergenic 30.0%
TAATTTAGTATTCCCTGCTT+TGG - tig0026434:4967-4986 Msa1429050:intron 30.0%
TAGTATTTGATATCCTTTGC+AGG - tig0026434:5076-5095 Msa1429050:intron 30.0%
TACTTTACATGTGCATCAAT+TGG - tig0026434:5324-5343 Msa1429050:intron 30.0%
AAAATCTACTAGTACATTGC+AGG + tig0026434:5530-5549 None:intergenic 30.0%
! TCAATGTTTGTGTTATTCTG+AGG - tig0026434:5561-5580 Msa1429050:intron 30.0%
TACAATTTCAGGGCTTAAAA+CGG + tig0026434:5688-5707 None:intergenic 30.0%
GTTTAACACCTACAATTTCA+GGG + tig0026434:5698-5717 None:intergenic 30.0%
TGTTTAACACCTACAATTTC+AGG + tig0026434:5699-5718 None:intergenic 30.0%
ATTCCTAAAGTAGACTTGAA+AGG - tig0026434:5806-5825 Msa1429050:intron 30.0%
CTTTCCATCTTTGTCAATAT+CGG + tig0026434:6054-6073 None:intergenic 30.0%
! ATTTAAGTTTCAGAGTTCCA+TGG + tig0026434:6304-6323 None:intergenic 30.0%
!!! GTACATCATTTTTAAGTGTC+AGG - tig0026434:6462-6481 Msa1429050:CDS 30.0%
TCTTCTACAAAGGTTGTTAG+TGG - tig0026434:521-540 Msa1429050:three_prime_UTR 35.0%
!! ACGGTTATCATTGTTGTTTG+TGG + tig0026434:561-580 None:intergenic 35.0%
!! GTTGATGATGATTCTTCTTC+TGG + tig0026434:688-707 None:intergenic 35.0%
TGTTCCTTGTGGAAAAAGAA+CGG - tig0026434:742-761 Msa1429050:three_prime_UTR 35.0%
! AAATCCGTTCTTTTTCCACA+AGG + tig0026434:749-768 None:intergenic 35.0%
!! TGTGGAAAAAGAACGGATTT+TGG - tig0026434:749-768 Msa1429050:three_prime_UTR 35.0%
!! GTGGAAAAAGAACGGATTTT+GGG - tig0026434:750-769 Msa1429050:three_prime_UTR 35.0%
!!! TTGGTTTTGGTTATTGGGTT+TGG - tig0026434:998-1017 Msa1429050:CDS 35.0%
!!! TGGTTTTGGTTATTGGGTTT+GGG - tig0026434:999-1018 Msa1429050:CDS 35.0%
GACTTTGCTCAAATTATTGG+TGG - tig0026434:1229-1248 Msa1429050:intron 35.0%
TGGTTGAAGTCATTTGTAAC+TGG - tig0026434:1249-1268 Msa1429050:intron 35.0%
GGTTGAAGTCATTTGTAACT+GGG - tig0026434:1250-1269 Msa1429050:intron 35.0%
TGTTGCATTATTTGACGTTG+TGG - tig0026434:1347-1366 Msa1429050:intron 35.0%
GTTGCATTATTTGACGTTGT+GGG - tig0026434:1348-1367 Msa1429050:intron 35.0%
! ATGAATAAATGTGGTTGGTG+TGG - tig0026434:1470-1489 Msa1429050:intron 35.0%
!! GGGTCTTTGATTTTCAATTG+TGG + tig0026434:1570-1589 None:intergenic 35.0%
CTAGTTAGAATAAACCCACT+TGG - tig0026434:1693-1712 Msa1429050:CDS 35.0%
TGGTTGAGTAATTTCAGATC+TGG - tig0026434:1862-1881 Msa1429050:intron 35.0%
TTACATCCTCAACTGCTATA+GGG + tig0026434:2055-2074 None:intergenic 35.0%
TTTACATCCTCAACTGCTAT+AGG + tig0026434:2056-2075 None:intergenic 35.0%
AGTTGAGGATGTAAAAAGAG+AGG - tig0026434:2061-2080 Msa1429050:CDS 35.0%
TTTATTAGGTTATGCGAAGG+TGG - tig0026434:2370-2389 Msa1429050:intron 35.0%
TCTGAATAGCCAACTAGAAA+AGG + tig0026434:2448-2467 None:intergenic 35.0%
AAAAAACACATTGCTGATCC+TGG + tig0026434:2499-2518 None:intergenic 35.0%
! CTACCTCTTCTTTTACAGAA+AGG - tig0026434:2543-2562 Msa1429050:intron 35.0%
TGTCCTTTCTGTAAAAGAAG+AGG + tig0026434:2549-2568 None:intergenic 35.0%
!! TCAGTGTCATTTACATGGTT+TGG - tig0026434:2627-2646 Msa1429050:intron 35.0%
! CAAAGAAGATTCAGCTTTGA+AGG - tig0026434:2778-2797 Msa1429050:intron 35.0%
TTGTCCGATTTCATAAAACC+TGG - tig0026434:2815-2834 Msa1429050:intron 35.0%
!! CTCACCAGGTTTTATGAAAT+CGG + tig0026434:2822-2841 None:intergenic 35.0%
GATTTCATAAAACCTGGTGA+GGG - tig0026434:2821-2840 Msa1429050:intron 35.0%
CTAAATTAGCCCACCTAAAT+TGG + tig0026434:3006-3025 None:intergenic 35.0%
! CTCTTTGAAAACGAATCTTC+AGG - tig0026434:3081-3100 Msa1429050:intron 35.0%
AAAACGAATCTTCAGGAAAG+AGG - tig0026434:3088-3107 Msa1429050:intron 35.0%
TACTCCATACATCTGATTCA+GGG + tig0026434:3176-3195 None:intergenic 35.0%
ATACTCCATACATCTGATTC+AGG + tig0026434:3177-3196 None:intergenic 35.0%
GAATCAGATGTATGGAGTAT+TGG - tig0026434:3177-3196 Msa1429050:intron 35.0%
! AAGGAAACAAAGACTTGTTC+AGG + tig0026434:3347-3366 None:intergenic 35.0%
TTTGCAGCATTACTTATGGT+TGG + tig0026434:3485-3504 None:intergenic 35.0%
! ATTGTTGGTAAAAGATCCTC+GGG - tig0026434:3520-3539 Msa1429050:intron 35.0%
TTTGTCGCTGCTTCAAATTT+AGG - tig0026434:3648-3667 Msa1429050:CDS 35.0%
TTGTCGCTGCTTCAAATTTA+GGG - tig0026434:3649-3668 Msa1429050:CDS 35.0%
ATGATGTGAAGATGACAACT+AGG - tig0026434:3848-3867 Msa1429050:intron 35.0%
! TTAAAAGACATGTTGGTCTC+AGG + tig0026434:3952-3971 None:intergenic 35.0%
ACCTAGGACAAAGAATAACT+TGG - tig0026434:4084-4103 Msa1429050:intron 35.0%
AAAGAATTGAGCTGCATGTA+AGG + tig0026434:4248-4267 None:intergenic 35.0%
TATGCAAAGCAATTCAAGTG+CGG + tig0026434:4285-4304 None:intergenic 35.0%
TTGGTTCATTCAGATTTGAG+TGG - tig0026434:4335-4354 Msa1429050:intron 35.0%
TCATTCAGATTTGAGTGGTT+TGG - tig0026434:4340-4359 Msa1429050:intron 35.0%
ATGGATGTGCTGTAAATATC+AGG + tig0026434:4583-4602 None:intergenic 35.0%
TGATATTTACAGCACATCCA+TGG - tig0026434:4582-4601 Msa1429050:intron 35.0%
GATATTTACAGCACATCCAT+GGG - tig0026434:4583-4602 Msa1429050:intron 35.0%
TATCTGTCCTAAACAACATG+CGG - tig0026434:4645-4664 Msa1429050:intron 35.0%
TCAGTTTGATGCAATAGATG+TGG - tig0026434:4852-4871 Msa1429050:intron 35.0%
GCAATAGATGTGGACAAAAA+TGG - tig0026434:4862-4881 Msa1429050:intron 35.0%
CAGGGAATACTAAATTACGA+GGG + tig0026434:4964-4983 None:intergenic 35.0%
!! GTCTAAAGTGAAGATTTTGC+AGG - tig0026434:4989-5008 Msa1429050:intron 35.0%
TTGCAATATCTCCAATACAC+GGG + tig0026434:5051-5070 None:intergenic 35.0%
CTTGCAATATCTCCAATACA+CGG + tig0026434:5052-5071 None:intergenic 35.0%
TGTATTGGAGATATTGCAAG+CGG - tig0026434:5052-5071 Msa1429050:intron 35.0%
TGATAAGTGCTCGACAAATA+TGG + tig0026434:5108-5127 None:intergenic 35.0%
AATGTGCAGATGAGTGATTA+GGG + tig0026434:5239-5258 None:intergenic 35.0%
TAAAGTAGCTGCTACAAACT+CGG + tig0026434:5311-5330 None:intergenic 35.0%
TTTACATGTGCATCAATTGG+AGG - tig0026434:5327-5346 Msa1429050:intron 35.0%
!! TTTGTGTTATTCTGAGGTGA+GGG - tig0026434:5567-5586 Msa1429050:intron 35.0%
!! GTTTTAAGCCCTGAAATTGT+AGG - tig0026434:5687-5706 Msa1429050:intron 35.0%
! ACTCCTTTCAAGTCTACTTT+AGG + tig0026434:5812-5831 None:intergenic 35.0%
! AGATCGGACAATTTAGTCTT+TGG + tig0026434:5878-5897 None:intergenic 35.0%
TGTCCGATCTCTACAATTTA+AGG - tig0026434:5888-5907 Msa1429050:intron 35.0%
GTCCGATCTCTACAATTTAA+GGG - tig0026434:5889-5908 Msa1429050:intron 35.0%
TCCGATCTCTACAATTTAAG+GGG - tig0026434:5890-5909 Msa1429050:intron 35.0%
TCCCCTTAAATTGTAGAGAT+CGG + tig0026434:5894-5913 None:intergenic 35.0%
!!! TGTTTGGCTTTTTAGCATAC+TGG - tig0026434:5993-6012 Msa1429050:intron 35.0%
! TTTTAGCATACTGGTATGAG+AGG - tig0026434:6002-6021 Msa1429050:intron 35.0%
CTTAAAAGTCTCCTGAATTC+TGG + tig0026434:6086-6105 None:intergenic 35.0%
!! CTTTTAAGAACTGCAAGCAT+TGG - tig0026434:6098-6117 Msa1429050:intron 35.0%
CACAGGAGATCATCTTAAAA+GGG + tig0026434:6222-6241 None:intergenic 35.0%
GTGTTAAAAGCTTAGTCTAG+AGG - tig0026434:6357-6376 Msa1429050:CDS 35.0%
!! TTTTAAGTGTCAGGGTTTTC+TGG - tig0026434:6471-6490 Msa1429050:CDS 35.0%
!! TTGTTGACGGATTCCGTTTA+CGG + tig0026434:580-599 None:intergenic 40.0%
TTGTTGGGTCATGGACAATT+TGG - tig0026434:812-831 Msa1429050:three_prime_UTR 40.0%
!!! AGCTTTTTCGAGTCGCTTAA+CGG + tig0026434:882-901 None:intergenic 40.0%
TAAGCGACTCGAAAAAGCTA+AGG - tig0026434:883-902 Msa1429050:three_prime_UTR 40.0%
ATGCAATTATTGTCGCGATG+CGG - tig0026434:1399-1418 Msa1429050:intron 40.0%
!! TCACAACGTACAAGTTTTGG+AGG + tig0026434:1528-1547 None:intergenic 40.0%
TGGAATAAAAAGAGAGGGGA+GGG + tig0026434:1590-1609 None:intergenic 40.0%
ATGGAATAAAAAGAGAGGGG+AGG + tig0026434:1591-1610 None:intergenic 40.0%
ACAACTGATGAACACAATGG+CGG + tig0026434:1634-1653 None:intergenic 40.0%
ACTATCATAACCATCCTCGA+AGG + tig0026434:1662-1681 None:intergenic 40.0%
TAGAATAAACCCACTTGGGT+TGG - tig0026434:1698-1717 Msa1429050:CDS 40.0%
GCTAAATAGCCCACCTAAAT+TGG + tig0026434:1794-1813 None:intergenic 40.0%
TGCGAGTTCAAGTAACAGAT+TGG - tig0026434:1842-1861 Msa1429050:intron 40.0%
CTGCTTCGTTTACACAAAAG+TGG - tig0026434:1989-2008 Msa1429050:intron 40.0%
!!! TCATTGACTTTTGTGGCAGA+TGG - tig0026434:2025-2044 Msa1429050:intron 40.0%
ACTTACAGGCCATGAAAATG+TGG - tig0026434:2100-2119 Msa1429050:CDS 40.0%
! TCGACAACTCCACAAGTTTT+TGG - tig0026434:2471-2490 Msa1429050:CDS 40.0%
ATCCTGGATCCAAAAACTTG+TGG + tig0026434:2483-2502 None:intergenic 40.0%
CGGCATCTTTCTCAGTATAA+CGG + tig0026434:2573-2592 None:intergenic 40.0%
ATCGGACAAACCAAAATCAG+TGG + tig0026434:2804-2823 None:intergenic 40.0%
CGATTTCATAAAACCTGGTG+AGG - tig0026434:2820-2839 Msa1429050:intron 40.0%
ATGTTCTTGCAAAACCCACT+TGG - tig0026434:2905-2924 Msa1429050:intron 40.0%
TGTTCTTGCAAAACCCACTT+GGG - tig0026434:2906-2925 Msa1429050:intron 40.0%
ATTCCCTCCAATGCCAATTT+AGG - tig0026434:2990-3009 Msa1429050:intron 40.0%
ACATATTGCTTTGTGGGAGA+CGG - tig0026434:3211-3230 Msa1429050:intron 40.0%
! TCCTCAGTCTTATCCCAAAA+TGG + tig0026434:3237-3256 None:intergenic 40.0%
!!! TTTTGGGATAAGACTGAGGA+TGG - tig0026434:3237-3256 Msa1429050:intron 40.0%
TTTGCGATCACATCATATGC+AGG - tig0026434:3421-3440 Msa1429050:intron 40.0%
CACATCATATGCAGGTCTTA+CGG - tig0026434:3429-3448 Msa1429050:intron 40.0%
AGTGAAAAGGGAAAGAAAGG+AGG - tig0026434:4039-4058 Msa1429050:intron 40.0%
GCCAAGTTATTCTTTGTCCT+AGG + tig0026434:4088-4107 None:intergenic 40.0%
AATTCAGTTCAAGGCTTTGC+AGG - tig0026434:4725-4744 Msa1429050:CDS 40.0%
TGGTTACTTGGTTATCTTGC+AGG - tig0026434:4783-4802 Msa1429050:intron 40.0%
! TAGTCTTGAAGAGATGAGAC+AGG - tig0026434:4891-4910 Msa1429050:intron 40.0%
GCAGGGAATACTAAATTACG+AGG + tig0026434:4965-4984 None:intergenic 40.0%
CTTCACTTTAGACCAAAGCA+GGG + tig0026434:4982-5001 None:intergenic 40.0%
TCTTCACTTTAGACCAAAGC+AGG + tig0026434:4983-5002 None:intergenic 40.0%
GTTGAAAGAATCCCGTGTAT+TGG - tig0026434:5037-5056 Msa1429050:intron 40.0%
AAGTGCTCGACAAATATGGA+TGG + tig0026434:5104-5123 None:intergenic 40.0%
ATGTGCAGATGAGTGATTAG+GGG + tig0026434:5238-5257 None:intergenic 40.0%
GAATGTGCAGATGAGTGATT+AGG + tig0026434:5240-5259 None:intergenic 40.0%
!! GTTTGTGTTATTCTGAGGTG+AGG - tig0026434:5566-5585 Msa1429050:intron 40.0%
!! TTGTGTTATTCTGAGGTGAG+GGG - tig0026434:5568-5587 Msa1429050:intron 40.0%
ACACACACATAGAGCTAATG+CGG + tig0026434:5622-5641 None:intergenic 40.0%
ACAATTTAAGGGGACCAAAG+TGG - tig0026434:5900-5919 Msa1429050:intron 40.0%
AAACGAGTGAATCACCACTT+TGG + tig0026434:5917-5936 None:intergenic 40.0%
GAAGCCGATATTGACAAAGA+TGG - tig0026434:6047-6066 Msa1429050:intron 40.0%
AGATCAGCTTACCAGAATTC+AGG - tig0026434:6072-6091 Msa1429050:intron 40.0%
CTAGCTTAGATGTGTTTCAG+AGG - tig0026434:6163-6182 Msa1429050:intron 40.0%
! TGATTCAAACGAGAGAGTGT+TGG - tig0026434:6192-6211 Msa1429050:intron 40.0%
GCACAGGAGATCATCTTAAA+AGG + tig0026434:6223-6242 None:intergenic 40.0%
CTGCAGAGCATATATCACAA+TGG + tig0026434:6260-6279 None:intergenic 40.0%
AGTTTCAGAGTTCCATGGAA+TGG + tig0026434:6299-6318 None:intergenic 40.0%
TAGAGTGTATAGACCCTGTT+TGG - tig0026434:6401-6420 Msa1429050:CDS 40.0%
TGTATAGACCCTGTTTGGAT+TGG - tig0026434:6406-6425 Msa1429050:CDS 40.0%
! GTTGATTCCGTGGTTGTTGA+CGG + tig0026434:593-612 None:intergenic 45.0%
!! GGTTCTAGACATGTTCCTTG+TGG - tig0026434:731-750 Msa1429050:three_prime_UTR 45.0%
CTTGGGAAATTGTTGGGTCA+TGG - tig0026434:803-822 Msa1429050:three_prime_UTR 45.0%
! CGGTCACAACGTACAAGTTT+TGG + tig0026434:1531-1550 None:intergenic 45.0%
CAACTGATGAACACAATGGC+GGG + tig0026434:1633-1652 None:intergenic 45.0%
GCCATTGTGTTCATCAGTTG+TGG - tig0026434:1633-1652 Msa1429050:intron 45.0%
GCCACAACTGATGAACACAA+TGG + tig0026434:1637-1656 None:intergenic 45.0%
!! GTGGTATTGACTTGGGTCTT+GGG - tig0026434:1725-1744 Msa1429050:CDS 45.0%
! ATTCTCTCCGGTGCCAATTT+AGG - tig0026434:1778-1797 Msa1429050:CDS 45.0%
AAGGTGGAGAACTACTAGAC+CGG - tig0026434:2386-2405 Msa1429050:intron 45.0%
!! CTCCACAAGTTTTTGGATCC+AGG - tig0026434:2478-2497 Msa1429050:CDS 45.0%
!! GCAGCTCAGTGTCATTTACA+TGG - tig0026434:2622-2641 Msa1429050:intron 45.0%
!!! GCTTTGAAGGCCACTGATTT+TGG - tig0026434:2791-2810 Msa1429050:intron 45.0%
CGTAAATAGTTTCCCTCACC+AGG + tig0026434:2836-2855 None:intergenic 45.0%
! CCACCTAAATTGGCATTGGA+GGG + tig0026434:2996-3015 None:intergenic 45.0%
CCTCCAATGCCAATTTAGGT+GGG - tig0026434:2994-3013 Msa1429050:intron 45.0%
TAGCCCACCTAAATTGGCAT+TGG + tig0026434:3000-3019 None:intergenic 45.0%
!! TCGCACCAGAAGTGTTGAAA+CGG - tig0026434:3142-3161 Msa1429050:intron 45.0%
GACTTCCGTTTCAACACTTC+TGG + tig0026434:3150-3169 None:intergenic 45.0%
!! GAAGTGTTGAAACGGAAGTC+AGG - tig0026434:3150-3169 Msa1429050:intron 45.0%
!!! GCCATTTTGGGATAAGACTG+AGG - tig0026434:3233-3252 Msa1429050:intron 45.0%
GACTGAGGATGGTATCTTCA+AGG - tig0026434:3248-3267 Msa1429050:intron 45.0%
TGAGGATGGTATCTTCAAGG+AGG - tig0026434:3251-3270 Msa1429050:intron 45.0%
TACGGAACAAGCCTGATTTC+CGG - tig0026434:3447-3466 Msa1429050:intron 45.0%
! GCATTACTTATGGTTGGCCA+TGG + tig0026434:3479-3498 None:intergenic 45.0%
AGATCCTCGGGCAAGATTAA+CGG - tig0026434:3532-3551 Msa1429050:intron 45.0%
AGCTGCATGTAAGGATGCTT+AGG + tig0026434:4239-4258 None:intergenic 45.0%
! CAAACTGCCGCATGTTGTTT+AGG + tig0026434:4655-4674 None:intergenic 45.0%
CTTGGTTATCTTGCAGGCAT+TGG - tig0026434:4789-4808 Msa1429050:intron 45.0%
TTGGCTAGCACACTTAACGA+AGG - tig0026434:4808-4827 Msa1429050:intron 45.0%
TGGCTAGCACACTTAACGAA+GGG - tig0026434:4809-4828 Msa1429050:intron 45.0%
GGGATTCTTTCAACTTCCAC+GGG + tig0026434:5031-5050 None:intergenic 45.0%
CGGGATTCTTTCAACTTCCA+CGG + tig0026434:5032-5051 None:intergenic 45.0%
AATATGGATGGTGCCTGCAA+AGG + tig0026434:5092-5111 None:intergenic 45.0%
CAGATTGACAGCAACACAGA+TGG - tig0026434:5271-5290 Msa1429050:intron 45.0%
GGATGGGTATATTACTCCAG+AGG - tig0026434:5414-5433 Msa1429050:intron 45.0%
TACTCCAGAGGAACTCAGAA+TGG - tig0026434:5426-5445 Msa1429050:intron 45.0%
CAAACCATTCTGAGTTCCTC+TGG + tig0026434:5433-5452 None:intergenic 45.0%
!! TGTGTTATTCTGAGGTGAGG+GGG - tig0026434:5569-5588 Msa1429050:intron 45.0%
ACGGCAATTCACGCTAAGTT+GGG + tig0026434:5669-5688 None:intergenic 45.0%
AACGGCAATTCACGCTAAGT+TGG + tig0026434:5670-5689 None:intergenic 45.0%
TCCTTCGATGACGTAGAGTT+GGG + tig0026434:6142-6161 None:intergenic 45.0%
ATCCTTCGATGACGTAGAGT+TGG + tig0026434:6143-6162 None:intergenic 45.0%
GCTTAGATGTGTTTCAGAGG+CGG - tig0026434:6166-6185 Msa1429050:intron 45.0%
TGCAATCTCTTGCCATTCCA+TGG - tig0026434:6284-6303 Msa1429050:CDS 45.0%
ACCTGAAGCCAATCCAAACA+GGG + tig0026434:6417-6436 None:intergenic 45.0%
TACCTGAAGCCAATCCAAAC+AGG + tig0026434:6418-6437 None:intergenic 45.0%
!! TTATAAAAAATATAGATTTA+AGG - tig0026434:5196-5215 Msa1429050:intron 5.0%
ACGGAATCCGTCAACAACCA+CGG - tig0026434:583-602 Msa1429050:three_prime_UTR 50.0%
CACGGAATCAACAGCAACCA+CGG - tig0026434:601-620 Msa1429050:three_prime_UTR 50.0%
GTACGTTGTGACCGTACTTG+CGG - tig0026434:1537-1556 Msa1429050:intron 50.0%
! AACACAATGGCGGGAGAAAC+TGG + tig0026434:1624-1643 None:intergenic 50.0%
ATCAGTTGTGGCATCCTTCG+AGG - tig0026434:1645-1664 Msa1429050:intron 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG - tig0026434:1717-1736 Msa1429050:CDS 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG - tig0026434:1718-1737 Msa1429050:CDS 50.0%
AGACCCAAGTCAATACCACC+AGG + tig0026434:1724-1743 None:intergenic 50.0%
!! GGTGGTATTGACTTGGGTCT+TGG - tig0026434:1724-1743 Msa1429050:CDS 50.0%
GAATCGAACCTGAGACCTTG+CGG + tig0026434:1762-1781 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - tig0026434:1766-1785 Msa1429050:CDS 50.0%
! TCTCCGGTGCCAATTTAGGT+GGG - tig0026434:1782-1801 Msa1429050:CDS 50.0%
TAGCCCACCTAAATTGGCAC+CGG + tig0026434:1788-1807 None:intergenic 50.0%
GGTTCTCCCTATAGCAGTTG+AGG - tig0026434:2046-2065 Msa1429050:intron 50.0%
CAGCATCTGCCTTACAACCA+CGG + tig0026434:2596-2615 None:intergenic 50.0%
GGTTGTAAGGCAGATGCTGA+AGG - tig0026434:2597-2616 Msa1429050:intron 50.0%
AGTGAACTTGACCTCACCTC+TGG + tig0026434:2670-2689 None:intergenic 50.0%
AGAGGTGAGGTCAAGTTCAC+TGG - tig0026434:2669-2688 Msa1429050:intron 50.0%
CTTGCAAAACCCACTTGGGT+TGG - tig0026434:2910-2929 Msa1429050:intron 50.0%
CCCTCCAATGCCAATTTAGG+TGG - tig0026434:2993-3012 Msa1429050:intron 50.0%
! CCCACCTAAATTGGCATTGG+AGG + tig0026434:2997-3016 None:intergenic 50.0%
CAGGCCCTGAATCAGATGTA+TGG - tig0026434:3169-3188 Msa1429050:intron 50.0%
! TTTGTGGGAGACGGCCATTT+TGG - tig0026434:3220-3239 Msa1429050:intron 50.0%
!! TTGTGGGAGACGGCCATTTT+GGG - tig0026434:3221-3240 Msa1429050:intron 50.0%
!! GCACATCCATGGGTTAGAGA+AGG - tig0026434:4593-4612 Msa1429050:intron 50.0%
!! CATCCATGGGTTAGAGAAGG+AGG - tig0026434:4596-4615 Msa1429050:intron 50.0%
TCTCCTCCTTCTCTAACCCA+TGG + tig0026434:4602-4621 None:intergenic 50.0%
!! ATGGGTTAGAGAAGGAGGAG+AGG - tig0026434:4601-4620 Msa1429050:intron 50.0%
TCAAGGCTTTGCAGGCTAGA+AGG - tig0026434:4733-4752 Msa1429050:CDS 50.0%
! CTTTGCAGGCTAGAAGGTGT+TGG - tig0026434:4739-4758 Msa1429050:intron 50.0%
GGCTAGCACACTTAACGAAG+GGG - tig0026434:4810-4829 Msa1429050:intron 50.0%
CTCTTGCTAAAGATCTCCCG+TGG - tig0026434:5012-5031 Msa1429050:intron 50.0%
AGGAACATGACTCCGACAAG+TGG - tig0026434:5347-5366 Msa1429050:intron 50.0%
GGCTTCAACACAATCTGCAC+AGG + tig0026434:6239-6258 None:intergenic 50.0%
AATATGGCGTCGTCTCGCAA+AGG - tig0026434:6331-6350 Msa1429050:CDS 50.0%
!! ACCCTGTTTGGATTGGCTTC+AGG - tig0026434:6413-6432 Msa1429050:CDS 50.0%
!! CGTGGTTGCTGTTGATTCCG+TGG + tig0026434:603-622 None:intergenic 55.0%
GGAATCAACAGCAACCACGG+CGG - tig0026434:604-623 Msa1429050:three_prime_UTR 55.0%
GGCGGCGAAGCAGAAACAAA+CGG - tig0026434:637-656 Msa1429050:three_prime_UTR 55.0%
TTATTGTCGCGATGCGGCTG+AGG - tig0026434:1405-1424 Msa1429050:intron 55.0%
GTTGTGGCATCCTTCGAGGA+TGG - tig0026434:1649-1668 Msa1429050:intron 55.0%
!! TAAACCCACTTGGGTTGGCC+TGG - tig0026434:1703-1722 Msa1429050:CDS 55.0%
! CTCTCCGGTGCCAATTTAGG+TGG - tig0026434:1781-1800 Msa1429050:CDS 55.0%
TACTGAGAAAGATGCCGCCG+TGG - tig0026434:2576-2595 Msa1429050:intron 55.0%
AAGATGCCGCCGTGGTTGTA+AGG - tig0026434:2584-2603 Msa1429050:intron 55.0%
CATCTGCCTTACAACCACGG+CGG + tig0026434:2593-2612 None:intergenic 55.0%
ACATCGCGACATGAAGCCAG+AGG - tig0026434:2651-2670 Msa1429050:intron 55.0%
!! AAAACCCACTTGGGTTGGCC+TGG - tig0026434:2915-2934 Msa1429050:intron 55.0%
!! TTGGGTTGGCCTGGTGGTAT+TGG - tig0026434:1712-1731 Msa1429050:CDS 55.0%
!! TTGGCCTGGTGGTATTGGCT+TGG - tig0026434:2929-2948 Msa1429050:intron 55.0%
!! TGGCCTGGTGGTATTGGCTT+GGG - tig0026434:2930-2949 Msa1429050:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG - tig0026434:2937-2956 Msa1429050:intron 55.0%
GAATCGAACCTGAGACCTCG+AGG + tig0026434:2974-2993 None:intergenic 55.0%
GGAACAAGCCTGATTTCCGG+CGG - tig0026434:3450-3469 Msa1429050:intron 55.0%
CATGGTTTCCGCCGGAAATC+AGG + tig0026434:3461-3480 None:intergenic 55.0%
CTGATTTCCGGCGGAAACCA+TGG - tig0026434:3459-3478 Msa1429050:intron 55.0%
GGCAAGATTAACGGCTGCTC+AGG - tig0026434:3541-3560 Msa1429050:intron 55.0%
ACTCCGACAAGTGGCAGCAA+CGG - tig0026434:5356-5375 Msa1429050:intron 55.0%
! TGACCGTTGCTGCCACTTGT+CGG + tig0026434:5362-5381 None:intergenic 55.0%
TTCCATCGATCCTCTGCTCG+AGG - tig0026434:6025-6044 Msa1429050:intron 55.0%
TTCCTCGAGCAGAGGATCGA+TGG + tig0026434:6030-6049 None:intergenic 55.0%
!! ATATCGGCTTCCTCGAGCAG+AGG + tig0026434:6038-6057 None:intergenic 55.0%
GCCCAACTCTACGTCATCGA+AGG - tig0026434:6138-6157 Msa1429050:intron 55.0%
GTGACCGTACTTGCGGTTGC+TGG - tig0026434:1544-1563 Msa1429050:intron 60.0%
GTGGCCAGCAACCGCAAGTA+CGG + tig0026434:1551-1570 None:intergenic 60.0%
ACCACCAGGCCAACCCAAGT+GGG + tig0026434:1710-1729 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG + tig0026434:1711-1730 None:intergenic 60.0%
! TGGGAGTATGCTCCTCCGCA+AGG - tig0026434:1744-1763 Msa1429050:CDS 60.0%
ATGCTCCTCCGCAAGGTCTC+AGG - tig0026434:1751-1770 Msa1429050:CDS 60.0%
TCGAACCTGAGACCTTGCGG+AGG + tig0026434:1759-1778 None:intergenic 60.0%
GCGACATGAAGCCAGAGGTG+AGG - tig0026434:2656-2675 Msa1429050:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG + tig0026434:1710-1729 None:intergenic 60.0%
TACCACCAGGCCAACCCAAG+TGG + tig0026434:1711-1730 None:intergenic 60.0%
GGTCCCAAGCCAATACCACC+AGG + tig0026434:2936-2955 None:intergenic 60.0%
!! GGTGGTATTGGCTTGGGACC+TGG - tig0026434:2936-2955 Msa1429050:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG + tig0026434:2971-2990 None:intergenic 60.0%
! TGGTTGGCCATGGTTTCCGC+CGG + tig0026434:3469-3488 None:intergenic 60.0%
GCAGCCGTTAATCTTGCCCG+AGG + tig0026434:3539-3558 None:intergenic 60.0%
CAAGTGGCAGCAACGGTCAC+AGG - tig0026434:5363-5382 Msa1429050:intron 60.0%
TTCTGCTTCGCCGCCGCTGT+CGG + tig0026434:632-651 None:intergenic 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - tig0026434:1706-1725 Msa1429050:CDS 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - tig0026434:1706-1725 Msa1429050:CDS 65.0%
! TCGAGGAGGAGCACACTCCC+AGG + tig0026434:2957-2976 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG - tig0026434:2956-2975 Msa1429050:intron 65.0%
GTGCTCCTCCTCGAGGTCTC+AGG - tig0026434:2963-2982 Msa1429050:intron 65.0%
!! AACCACGGCGGCGCCGACAG+CGG - tig0026434:616-635 Msa1429050:three_prime_UTR 75.0%
!!! CACGGCGGCGCCGACAGCGG+CGG - tig0026434:619-638 Msa1429050:three_prime_UTR 85.0%
! CGCCGCTGTCGGCGCCGCCG+TGG + tig0026434:621-640 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
tig0026434 gene 506 6628 506 ID=Msa1429050;Name=Msa1429050
tig0026434 mRNA 506 6628 506 ID=Msa1429050-mRNA-1;Parent=Msa1429050;Name=Msa1429050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.77|0.7|1|0.77|0.8|10|462|483
tig0026434 exon 506 1126 506 ID=Msa1429050-mRNA-1:exon:6348;Parent=Msa1429050-mRNA-1
tig0026434 exon 1687 1860 1687 ID=Msa1429050-mRNA-1:exon:6347;Parent=Msa1429050-mRNA-1
tig0026434 exon 2061 2123 2061 ID=Msa1429050-mRNA-1:exon:6346;Parent=Msa1429050-mRNA-1
tig0026434 exon 2222 2329 2222 ID=Msa1429050-mRNA-1:exon:6345;Parent=Msa1429050-mRNA-1
tig0026434 exon 2425 2540 2425 ID=Msa1429050-mRNA-1:exon:6344;Parent=Msa1429050-mRNA-1
tig0026434 exon 3565 3691 3565 ID=Msa1429050-mRNA-1:exon:6343;Parent=Msa1429050-mRNA-1
tig0026434 exon 3862 4003 3862 ID=Msa1429050-mRNA-1:exon:6342;Parent=Msa1429050-mRNA-1
tig0026434 exon 4457 4573 4457 ID=Msa1429050-mRNA-1:exon:6341;Parent=Msa1429050-mRNA-1
tig0026434 exon 4715 4756 4715 ID=Msa1429050-mRNA-1:exon:6340;Parent=Msa1429050-mRNA-1
tig0026434 exon 6225 6628 6225 ID=Msa1429050-mRNA-1:exon:6339;Parent=Msa1429050-mRNA-1
tig0026434 CDS 6225 6628 6225 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 4715 4756 4715 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 4457 4573 4457 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 3862 4003 3862 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 3565 3691 3565 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 2425 2540 2425 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 2222 2329 2222 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 2061 2123 2061 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 1687 1860 1687 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 CDS 968 1126 968 ID=Msa1429050-mRNA-1:cds;Parent=Msa1429050-mRNA-1
tig0026434 three_prime_UTR 506 967 506 ID=Msa1429050-mRNA-1:three_prime_utr;Parent=Msa1429050-mRNA-1
Gene Sequence

>Msa1429050

ATGGGTTTATGTTTTTCTTCTACAAAGGTTGTTAGTGGTTCTAACAGCAACACCACAAACAACAATGATAACCGTAAACGGAATCCGTCAACAACCACGGAATCAACAGCAACCACGGCGGCGCCGACAGCGGCGGCGAAGCAGAAACAAACGGCACAGAAACGTAAAGATGAAACAGCCCAGAAGAAGAATCATCATCAACATCATAGGTTAAAAGACAAAACAGGTTCTAGACATGTTCCTTGTGGAAAAAGAACGGATTTTGGGTATGAGAAAGATTTTGATAAGAGATTTTCTCTTGGGAAATTGTTGGGTCATGGACAATTTGGTTATACTTATGTTGGTGTTGATAAATCTAATGGAGATCGTGTCGCCGTTAAGCGACTCGAAAAAGCTAAGGTATTGTTATGCGAAGGTGGAGAACTACTAGACCGGATACTAAACAAAAAGGACAGCCGTTATACTGAGAAAGATGCCGCCGTGGTTGTAAGGCAGATGCTGAAGGTTGCAGCTCAGTGTCATTTACATGGTTTGGTACATCGCGACATGAAGCCAGAGGTGAGTGCTTACTATGTCGCACCAGAAGTGTTGAAACGGAAGTCAGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATCACATACATATTGCTTTGTGGGAGACGGCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGGCGGAAACCATGGCCAACCATAAGTAATGCTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCTCGGGCAAGATTAACGGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATCCGAGATTCCAATTGATATATCTGTCCTAAACAACATGCGGCAGTTTGTGAAGTATAGTCGATTGAAACAATTTGCATTGAGGGCATTGGCTAGCACACTTAACGAAGGGGAGTTGTCTGATCTCAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTGCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCGTGGAAGTTGAAAGAATCCCGTGTATTGGAGATATTGCAAGCGATTGACAGCAACACAGATGGATTAGTAGATTTCACCGAGTTTGTAGCAGCTACTTTACATGTGCATCAATTGGAGGAACATGACTCCGACAAGTGGCAGCAACGGTCACAGGCTGCTTTTGAGAAATTTGACATAGATAAGGATGGGTATATTACTCCAGAGGAACTCAGAATGCATACTGGTATGAGAGGTTCCATCGATCCTCTGCTCGAGGAAGCCGATATTGACAAAGATGGAAAGATCAGCTTACCAGAATTCAGGAGACTTTTAAGAACTGCAAGCATTGGTTCTCGTAACGTAACAAGCCCAACTCTACGTCATCGAAGGATCTAG
Protein sequence

>Msa1429050

MGLCFSSTKVVSGSNSNTTNNNDNRKRNPSTTTESTATTAAPTAAAKQKQTAQKRKDETAQKKNHHQHHRLKDKTGSRHVPCGKRTDFGYEKDFDKRFSLGKLLGHGQFGYTYVGVDKSNGDRVAVKRLEKAKVLLCEGGELLDRILNKKDSRYTEKDAAVVVRQMLKVAAQCHLHGLVHRDMKPEVSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARLTAAQALSHPWVREGGEASEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEGELSDLKDQFDAIDVDKNGAISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDKWQQRSQAAFEKFDIDKDGYITPEELRMHTGMRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNVTSPTLRHRRI*