Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207890 | AES90999.1 | 99.823 | 564 | 1 | 0 | 1 | 564 | 103 | 666 | 0.0 | 1173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207890 | sp|Q9C5X3|KEULE_ARATH | 77.778 | 567 | 122 | 2 | 1 | 564 | 101 | 666 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614380 | Msa1207890 | 0.826828 | 2.189062e-54 | -8.615850e-47 |
| Msa0639010 | Msa1207890 | 0.830606 | 2.672177e-55 | -8.615850e-47 |
| Msa0697590 | Msa1207890 | 0.839250 | 1.772463e-57 | -8.615850e-47 |
| Msa0758850 | Msa1207890 | 0.823763 | 1.162624e-53 | -8.615850e-47 |
| Msa0838090 | Msa1207890 | 0.851324 | 9.560839e-61 | -8.615850e-47 |
| Msa0408340 | Msa1207890 | 0.803364 | 3.611628e-49 | -8.615850e-47 |
| Msa0480930 | Msa1207890 | 0.950197 | 2.704494e-108 | -8.615850e-47 |
| Msa1031460 | Msa1207890 | 0.827047 | 1.940995e-54 | -8.615850e-47 |
| Msa1070540 | Msa1207890 | 0.817883 | 2.617614e-52 | -8.615850e-47 |
| Msa1084640 | Msa1207890 | 0.810312 | 1.227175e-50 | -8.615850e-47 |
| Msa1101240 | Msa1207890 | 0.817789 | 2.747859e-52 | -8.615850e-47 |
| Msa1207890 | Msa1356050 | 0.810427 | 1.158727e-50 | -8.615850e-47 |
| Msa1207890 | Msa1400340 | 0.805064 | 1.598874e-49 | -8.615850e-47 |
| Msa1207890 | Msa1408980 | 0.862922 | 3.595076e-64 | -8.615850e-47 |
| Msa1207890 | Msa1416730 | 0.816404 | 5.627963e-52 | -8.615850e-47 |
| Msa1207890 | Msa1429050 | 0.814404 | 1.567596e-51 | -8.615850e-47 |
| Msa0501410 | Msa1207890 | 0.812028 | 5.209456e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207890 | MtrunA17_Chr4g0056851 | 99.823 | 564 | 1 | 0 | 1 | 564 | 206 | 769 | 0.0 | 1173 |
| Msa1207890 | MtrunA17_Chr5g0398701 | 80.944 | 572 | 96 | 5 | 1 | 564 | 103 | 669 | 0.0 | 967 |
| Msa1207890 | MtrunA17_Chr4g0010911 | 57.236 | 615 | 194 | 6 | 1 | 546 | 79 | 693 | 0.0 | 704 |
| Msa1207890 | MtrunA17_Chr4g0067491 | 48.872 | 133 | 40 | 1 | 164 | 268 | 7 | 139 | 4.38e-36 | 131 |
| Msa1207890 | MtrunA17_Chr3g0126071 | 22.626 | 358 | 242 | 11 | 92 | 443 | 170 | 498 | 4.87e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207890 | AT1G12360.1 | 77.778 | 567 | 122 | 2 | 1 | 564 | 101 | 666 | 0.0 | 922 |
| Msa1207890 | AT4G12120.1 | 66.549 | 565 | 183 | 3 | 2 | 564 | 102 | 662 | 0.0 | 798 |
| Msa1207890 | AT1G02010.5 | 66.844 | 564 | 165 | 8 | 1 | 552 | 71 | 624 | 0.0 | 759 |
| Msa1207890 | AT1G02010.1 | 66.844 | 564 | 165 | 8 | 1 | 552 | 103 | 656 | 0.0 | 758 |
| Msa1207890 | AT1G02010.2 | 64.716 | 564 | 164 | 9 | 1 | 552 | 103 | 643 | 0.0 | 747 |
| Msa1207890 | AT1G02010.4 | 63.468 | 594 | 165 | 9 | 1 | 552 | 103 | 686 | 0.0 | 742 |
| Msa1207890 | AT1G02010.6 | 65.764 | 517 | 155 | 8 | 48 | 552 | 1 | 507 | 0.0 | 683 |
| Msa1207890 | AT1G02010.3 | 65.737 | 502 | 150 | 8 | 1 | 490 | 103 | 594 | 0.0 | 674 |
| Msa1207890 | AT1G77140.1 | 22.346 | 358 | 245 | 10 | 92 | 443 | 170 | 500 | 3.81e-17 | 85.1 |
Find 145 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGTACCTCAATTA+TGG | 0.115829 | 8_1:+65721009 | None:intergenic |
| GAAAAGTTAACAGCATTATT+AGG | 0.170268 | 8_1:-65721789 | Msa1207890:CDS |
| GAATGCGTACTTTCTGTATA+AGG | 0.197749 | 8_1:+65727696 | None:intergenic |
| ATAAATCAAGGCATATTATT+TGG | 0.203871 | 8_1:+65719050 | None:intergenic |
| AACTTCCCTCTTGAGCTTTC+CGG | 0.210081 | 8_1:+65719612 | None:intergenic |
| AGAGCTTTGGAGGAGCTATT+TGG | 0.211478 | 8_1:-65725262 | Msa1207890:CDS |
| TCTGAATATAACAAATTCTT+TGG | 0.236617 | 8_1:-65719326 | Msa1207890:three_prime_UTR |
| GCTCAAGAGGGAAGTTATTC+TGG | 0.237770 | 8_1:-65719605 | Msa1207890:CDS |
| GTTGCGATTGTTAATGATTC+TGG | 0.256096 | 8_1:-65721497 | Msa1207890:CDS |
| CTCAAATTTCTCAGGATATA+TGG | 0.269433 | 8_1:+65721471 | None:intergenic |
| GTCTCAGTTTGAGGAAAATT+AGG | 0.288737 | 8_1:+65724918 | None:intergenic |
| GTGCCGTGATTTGTTGAATA+TGG | 0.297232 | 8_1:-65724725 | Msa1207890:CDS |
| AGGAATTTGTACTGAATAGA+TGG | 0.300236 | 8_1:-65719092 | Msa1207890:three_prime_UTR |
| GAGCTTTGGAGGAGCTATTT+GGG | 0.304847 | 8_1:-65725261 | Msa1207890:CDS |
| TTAATTTGTACCTCAATTAT+GGG | 0.314102 | 8_1:+65721010 | None:intergenic |
| GATGTTACGGACTTGGAAAC+TGG | 0.342702 | 8_1:-65719397 | Msa1207890:three_prime_UTR |
| AAAAGTTAACAGCATTATTA+GGG | 0.343370 | 8_1:-65721788 | Msa1207890:CDS |
| AAAACTTCAACCAGTGGCTT+TGG | 0.344899 | 8_1:-65721205 | Msa1207890:CDS |
| CAAGTCCGTAACATCATATC+TGG | 0.351974 | 8_1:+65719405 | None:intergenic |
| CCCCATCTTCTTGAAATCAC+TGG | 0.353343 | 8_1:+65719792 | None:intergenic |
| TAAAATATCACTTTGTTGTA+AGG | 0.357436 | 8_1:-65719185 | Msa1207890:three_prime_UTR |
| TTTGACCTCTGTGGTTCAAC+CGG | 0.365264 | 8_1:-65719300 | Msa1207890:three_prime_UTR |
| CTAAGCTTGCTGCCGGTGTA+TGG | 0.368486 | 8_1:-65724971 | Msa1207890:CDS |
| AGTTTCTCCATCTAGATTGC+AGG | 0.371829 | 8_1:-65721811 | Msa1207890:intron |
| AACAGCTCAAGAACTTTCAT+TGG | 0.376022 | 8_1:-65719435 | Msa1207890:CDS |
| AATGCGTACTTTCTGTATAA+GGG | 0.377503 | 8_1:+65727697 | None:intergenic |
| TGGAAGATCATGATCCTATA+TGG | 0.380708 | 8_1:-65724554 | Msa1207890:CDS |
| TTGGGGACGAGGAGAATAAT+AGG | 0.381100 | 8_1:-65725243 | Msa1207890:CDS |
| AGAATATTTATATTCATTGT+TGG | 0.383776 | 8_1:-65719766 | Msa1207890:CDS |
| TTCACCTATCGCCAGAGAAT+TGG | 0.395061 | 8_1:-65727570 | Msa1207890:CDS |
| CAGATATGATGTTACGGACT+TGG | 0.399017 | 8_1:-65719404 | Msa1207890:exon |
| ATCCAGTGATTTCAAGAAGA+TGG | 0.403228 | 8_1:-65719794 | Msa1207890:CDS |
| AGGATTTGCCACAAGCTTAC+CGG | 0.403969 | 8_1:-65719631 | Msa1207890:CDS |
| AAGGCATATTATTTGGTACT+TGG | 0.413784 | 8_1:+65719057 | None:intergenic |
| GAGACAGGACTTCGGGAACT+TGG | 0.416165 | 8_1:-65721766 | Msa1207890:CDS |
| AAGAAAGGAAAACAACTTGT+TGG | 0.416472 | 8_1:+65719133 | None:intergenic |
| AACTCGCATGTCTCAGTTTG+AGG | 0.421183 | 8_1:+65724909 | None:intergenic |
| TATTAGGGAGACAGGACTTC+GGG | 0.426509 | 8_1:-65721773 | Msa1207890:CDS |
| TGAGAAATTTGAGGGTGAAA+AGG | 0.429271 | 8_1:-65721461 | Msa1207890:CDS |
| ATAAATAATTTGAGAGTGCT+AGG | 0.431782 | 8_1:-65721247 | Msa1207890:CDS |
| TACAAACAATGAGAGAGCTT+TGG | 0.436186 | 8_1:-65725275 | Msa1207890:CDS |
| TGATCCTGCACAATTTATTA+CGG | 0.437581 | 8_1:-65719566 | Msa1207890:intron |
| GAGAAATTTGAGGGTGAAAA+GGG | 0.439138 | 8_1:-65721460 | Msa1207890:CDS |
| TGAGTTACGGATCCAGCATA+TGG | 0.439290 | 8_1:+65720196 | None:intergenic |
| GACAAGCAACTTTAAAAGAA+AGG | 0.448117 | 8_1:+65719118 | None:intergenic |
| TGACGAAGTTCAAGCCATAT+AGG | 0.450605 | 8_1:+65724540 | None:intergenic |
| TATGGTGTACCGTGGAAAGA+TGG | 0.452826 | 8_1:+65720214 | None:intergenic |
| TTTATTCTTTGAAATGAAGT+TGG | 0.454027 | 8_1:+65724364 | None:intergenic |
| TCCAGTGATTTCAAGAAGAT+GGG | 0.455512 | 8_1:-65719793 | Msa1207890:CDS |
| ACACCGGCAGCAAGCTTAGT+AGG | 0.457876 | 8_1:+65724975 | None:intergenic |
| TTGTTCGCTTTCGTGCTGCC+AGG | 0.462577 | 8_1:-65725040 | Msa1207890:CDS |
| CTCAAGAGGGAAGTTATTCT+GGG | 0.463615 | 8_1:-65719604 | Msa1207890:CDS |
| TGTTCCATTTATAGGGGTAG+TGG | 0.463635 | 8_1:-65723040 | Msa1207890:intron |
| AGGAAAACAACTTGTTGGGC+AGG | 0.468431 | 8_1:+65719138 | None:intergenic |
| AGAAAGGAAAACAACTTGTT+GGG | 0.469286 | 8_1:+65719134 | None:intergenic |
| AACAGCATTATTAGGGAGAC+AGG | 0.470635 | 8_1:-65721781 | Msa1207890:CDS |
| AATCTCCATCACCAATTCTC+TGG | 0.471258 | 8_1:+65727559 | None:intergenic |
| TGTTGGGCAGGGGAGTTAAG+AGG | 0.472984 | 8_1:+65719150 | None:intergenic |
| GCAGCACGAAAGCGAACAAA+AGG | 0.474999 | 8_1:+65725044 | None:intergenic |
| GATGCTGGCATATAGCGATT+CGG | 0.476814 | 8_1:-65719830 | Msa1207890:intron |
| CATTGATAGAACTATCGATC+AGG | 0.482344 | 8_1:-65724880 | Msa1207890:intron |
| CGAGAGAAAAGAGGTTCTGC+TGG | 0.487610 | 8_1:-65724574 | Msa1207890:CDS |
| CGACTCACCTCGAACCATGC+TGG | 0.492940 | 8_1:+65724330 | None:intergenic |
| GATCAAGGCGAACACCAACT+TGG | 0.495387 | 8_1:-65720150 | Msa1207890:CDS |
| AAAGGGTCTTAATTTGATGA+AGG | 0.495799 | 8_1:-65721443 | Msa1207890:intron |
| TCTTAAGTTTGATATGCATA+AGG | 0.497751 | 8_1:-65721182 | Msa1207890:intron |
| TGTTGCATGTTTGAATGTAA+TGG | 0.497827 | 8_1:-65725215 | Msa1207890:CDS |
| CACAAGAACCAACCTCTACA+TGG | 0.506378 | 8_1:+65722939 | None:intergenic |
| TAAGCTTGCTGCCGGTGTAT+GGG | 0.506800 | 8_1:-65724970 | Msa1207890:CDS |
| ATATTTATATTCATTGTTGG+TGG | 0.512795 | 8_1:-65719763 | Msa1207890:CDS |
| CATATATCCTGAGAAATTTG+AGG | 0.513253 | 8_1:-65721470 | Msa1207890:CDS |
| CTTTGGACATTTGACCTCTG+TGG | 0.515744 | 8_1:-65719309 | Msa1207890:three_prime_UTR |
| AAACAATGAGAGAGCTTTGG+AGG | 0.515998 | 8_1:-65725272 | Msa1207890:CDS |
| CTATAGATTCCTGGCAGGAA+TGG | 0.522996 | 8_1:-65724606 | Msa1207890:intron |
| AACAAGGGACTTACAGAAGA+TGG | 0.525806 | 8_1:-65723008 | Msa1207890:CDS |
| ATGGTGTACCGTGGAAAGAT+GGG | 0.531471 | 8_1:+65720215 | None:intergenic |
| TTGCTCCTGTGATACATGAA+TGG | 0.532328 | 8_1:-65724762 | Msa1207890:CDS |
| AGACAGGACTTCGGGAACTT+GGG | 0.533028 | 8_1:-65721765 | Msa1207890:CDS |
| GGAGGAGCTATTTGGGGACG+AGG | 0.533977 | 8_1:-65725254 | Msa1207890:CDS |
| TATCATATTGTGCATATGCT+AGG | 0.536193 | 8_1:-65719268 | Msa1207890:three_prime_UTR |
| CCGCTCATTCAATTAGATCA+AGG | 0.541628 | 8_1:-65720165 | Msa1207890:CDS |
| GCTTAGTAGGAATAAGATCA+TGG | 0.543305 | 8_1:+65724988 | None:intergenic |
| TGAGCTTTCCGGTAAGCTTG+TGG | 0.545816 | 8_1:+65719623 | None:intergenic |
| TTCCACGGTACACCATATGC+TGG | 0.547613 | 8_1:-65720208 | Msa1207890:CDS |
| GTTTGAATGTAATGGCTACT+CGG | 0.550138 | 8_1:-65725207 | Msa1207890:CDS |
| TAAGTCCATTCATGTATCAC+AGG | 0.551181 | 8_1:+65724757 | None:intergenic |
| GGAATTTGTACTGAATAGAT+GGG | 0.553430 | 8_1:-65719091 | Msa1207890:three_prime_UTR |
| TTATTAGGGAGACAGGACTT+CGG | 0.554400 | 8_1:-65721774 | Msa1207890:CDS |
| TAAATAATTTGAGAGTGCTA+GGG | 0.554772 | 8_1:-65721246 | Msa1207890:CDS |
| CACAAATCCAGCATGGTTCG+AGG | 0.557287 | 8_1:-65724337 | Msa1207890:intron |
| TCGATTTGTTCACTGTATTG+TGG | 0.557662 | 8_1:+65722974 | None:intergenic |
| ATCAAGGCGAACACCAACTT+GGG | 0.559612 | 8_1:-65720149 | Msa1207890:CDS |
| TTGACCTCTGTGGTTCAACC+GGG | 0.560420 | 8_1:-65719299 | Msa1207890:three_prime_UTR |
| ATTCCTACTAAGCTTGCTGC+CGG | 0.561274 | 8_1:-65724978 | Msa1207890:CDS |
| ATATATCCTGAGAAATTTGA+GGG | 0.563840 | 8_1:-65721469 | Msa1207890:CDS |
| GATCTCCAGATATGATGTTA+CGG | 0.563935 | 8_1:-65719410 | Msa1207890:exon |
| GGTGGACCACCATTCCTGCC+AGG | 0.564538 | 8_1:+65724597 | None:intergenic |
| GAAAACAACTTGTTGGGCAG+GGG | 0.567526 | 8_1:+65719140 | None:intergenic |
| AATACCGTAATAAATTGTGC+AGG | 0.567724 | 8_1:+65719562 | None:intergenic |
| GTACCGTGGAAAGATGGGCT+TGG | 0.571833 | 8_1:+65720220 | None:intergenic |
| TAGATTCCTGGCAGGAATGG+TGG | 0.572909 | 8_1:-65724603 | Msa1207890:CDS |
| GTTCTGACGATGGATATTCA+AGG | 0.575558 | 8_1:-65720114 | Msa1207890:intron |
| CAATATGATATTCAGTGGCC+CGG | 0.575585 | 8_1:+65719281 | None:intergenic |
| CCTCCATATTCAACAAATCA+CGG | 0.577025 | 8_1:+65724722 | None:intergenic |
| CTTGATCTAATTGAATGAGC+GGG | 0.581029 | 8_1:+65720166 | None:intergenic |
| GGAAAACAACTTGTTGGGCA+GGG | 0.587790 | 8_1:+65719139 | None:intergenic |
| ATTCAACAAATCACGGCACA+TGG | 0.589594 | 8_1:+65724729 | None:intergenic |
| CCTCGAGGTCGAGCCCAAGT+TGG | 0.589762 | 8_1:+65720136 | None:intergenic |
| AGCTTACCGGAAAGCTCAAG+AGG | 0.596417 | 8_1:-65719618 | Msa1207890:CDS |
| CAAGCTCTCCCTCCATGTAG+AGG | 0.600225 | 8_1:-65722951 | Msa1207890:intron |
| ACCACATACCTGACTGTCGA+TGG | 0.601103 | 8_1:+65727361 | None:intergenic |
| AAACTTAAGACCAAAGCCAC+TGG | 0.605269 | 8_1:+65721195 | None:intergenic |
| CCGTGATTTGTTGAATATGG+AGG | 0.606207 | 8_1:-65724722 | Msa1207890:CDS |
| TGGTGGAGCGACTAGATCTG+AGG | 0.607261 | 8_1:-65719746 | Msa1207890:intron |
| AGCTTTGGAGGAGCTATTTG+GGG | 0.612309 | 8_1:-65725260 | Msa1207890:CDS |
| CCTTGATCTAATTGAATGAG+CGG | 0.618052 | 8_1:+65720165 | None:intergenic |
| CGTGATTTGTTGAATATGGA+GGG | 0.619536 | 8_1:-65724721 | Msa1207890:CDS |
| ATGCACAATATGATATTCAG+TGG | 0.623364 | 8_1:+65719276 | None:intergenic |
| ATCACCAATTCTCTGGCGAT+AGG | 0.625497 | 8_1:+65727566 | None:intergenic |
| GGGCTTGGATCATTTAGACA+TGG | 0.627100 | 8_1:+65720235 | None:intergenic |
| TGTGTTCGCATCTAGTGACC+TGG | 0.627361 | 8_1:+65725022 | None:intergenic |
| AAATAATTTGAGAGTGCTAG+GGG | 0.627793 | 8_1:-65721245 | Msa1207890:CDS |
| TGGTCCACCCGAGAGAAAAG+AGG | 0.631616 | 8_1:-65724583 | Msa1207890:CDS |
| CGACCTCGAGGTTCTGACGA+TGG | 0.634447 | 8_1:-65720124 | Msa1207890:CDS |
| TATCGCCAGAGAATTGGTGA+TGG | 0.639643 | 8_1:-65727564 | Msa1207890:CDS |
| CCAGTGATTTCAAGAAGATG+GGG | 0.642821 | 8_1:-65719792 | Msa1207890:CDS |
| GATCCAAGCCCATCTTTCCA+CGG | 0.642835 | 8_1:-65720223 | Msa1207890:CDS |
| GATCTAATTGAATGAGCGGG+AGG | 0.647433 | 8_1:+65720169 | None:intergenic |
| AGAACCAACCTCTACATGGA+GGG | 0.652612 | 8_1:+65722943 | None:intergenic |
| TCGCATAGGTGCTTTAAGAG+AGG | 0.658334 | 8_1:-65727513 | Msa1207890:intron |
| TCTCTTAAAGCACCTATGCG+AGG | 0.659665 | 8_1:+65727515 | None:intergenic |
| GGCCTTGCCAGGCTAGTGAA+CGG | 0.660939 | 8_1:-65724403 | Msa1207890:intron |
| ATCCAGCATATGGTGTACCG+TGG | 0.670280 | 8_1:+65720206 | None:intergenic |
| ATCGTGCAGAAGAAGAGACA+TGG | 0.671651 | 8_1:-65721051 | Msa1207890:CDS |
| GCTTACCGGAAAGCTCAAGA+GGG | 0.676998 | 8_1:-65719617 | Msa1207890:CDS |
| CATAAGACAGTCCCATACAC+CGG | 0.678597 | 8_1:+65724959 | None:intergenic |
| AAAGCTGCACAAATCCAGCA+TGG | 0.680051 | 8_1:-65724344 | Msa1207890:CDS |
| CCAACTTGGGCTCGACCTCG+AGG | 0.690570 | 8_1:-65720136 | Msa1207890:CDS |
| GGGAAATAAATATGTTCACG+AGG | 0.698190 | 8_1:-65724701 | Msa1207890:intron |
| AAGAACCAACCTCTACATGG+AGG | 0.715376 | 8_1:+65722942 | None:intergenic |
| GTAGTGGTGAAATGTCAACA+AGG | 0.721505 | 8_1:-65723024 | Msa1207890:CDS |
| TAGTGGTGAAATGTCAACAA+GGG | 0.732016 | 8_1:-65723023 | Msa1207890:CDS |
| AATAATTTGAGAGTGCTAGG+GGG | 0.737660 | 8_1:-65721244 | Msa1207890:CDS |
| GTGGCCCGGTTGAACCACAG+AGG | 0.748422 | 8_1:+65719295 | None:intergenic |
| TATCCATCGTCAGAACCTCG+AGG | 0.756819 | 8_1:+65720121 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTGAATATAACAAATTCTT+TGG | - | chr8_1:65727469-65727488 | Msa1207890:intron | 20.0% |
| !!! | TAACTTTCTGAAAAATATTG+TGG | - | chr8_1:65727573-65727592 | Msa1207890:CDS | 20.0% |
| !!! | TAAAATATCACTTTGTTGTA+AGG | - | chr8_1:65727610-65727629 | Msa1207890:intron | 20.0% |
| ! | TTATGAAAATTTGCAAGCTA+AGG | + | chr8_1:65727291-65727310 | None:intergenic | 25.0% |
| ! | AAAGAAGAAAATAGTATGCA+AGG | + | chr8_1:65727318-65727337 | None:intergenic | 25.0% |
| TGATCCTGCACAATTTATTA+CGG | - | chr8_1:65727229-65727248 | Msa1207890:intron | 30.0% | |
| AATACCGTAATAAATTGTGC+AGG | + | chr8_1:65727236-65727255 | None:intergenic | 30.0% | |
| ! | AAACATGCTTGACTTTAGAA+AGG | + | chr8_1:65727268-65727287 | None:intergenic | 30.0% |
| ATGCACAATATGATATTCAG+TGG | + | chr8_1:65727522-65727541 | None:intergenic | 30.0% | |
| TATCATATTGTGCATATGCT+AGG | - | chr8_1:65727527-65727546 | Msa1207890:CDS | 30.0% | |
| ! | AGAAAGGAAAACAACTTGTT+GGG | + | chr8_1:65727664-65727683 | None:intergenic | 30.0% |
| AAGAAAGGAAAACAACTTGT+TGG | + | chr8_1:65727665-65727684 | None:intergenic | 30.0% | |
| ! | GACAAGCAACTTTAAAAGAA+AGG | + | chr8_1:65727680-65727699 | None:intergenic | 30.0% |
| !!! | TTTTAAAGTTGCTTGTCAAG+AGG | - | chr8_1:65727683-65727702 | Msa1207890:intron | 30.0% |
| AGGAATTTGTACTGAATAGA+TGG | - | chr8_1:65727703-65727722 | Msa1207890:intron | 30.0% | |
| GGAATTTGTACTGAATAGAT+GGG | - | chr8_1:65727704-65727723 | Msa1207890:intron | 30.0% | |
| AACAGCTCAAGAACTTTCAT+TGG | - | chr8_1:65727360-65727379 | Msa1207890:intron | 35.0% | |
| GATCTCCAGATATGATGTTA+CGG | - | chr8_1:65727385-65727404 | Msa1207890:intron | 35.0% | |
| CTCAAGAGGGAAGTTATTCT+GGG | - | chr8_1:65727191-65727210 | Msa1207890:intron | 40.0% | |
| CAAGTCCGTAACATCATATC+TGG | + | chr8_1:65727393-65727412 | None:intergenic | 40.0% | |
| CAGATATGATGTTACGGACT+TGG | - | chr8_1:65727391-65727410 | Msa1207890:intron | 40.0% | |
| CAATATGATATTCAGTGGCC+CGG | + | chr8_1:65727517-65727536 | None:intergenic | 40.0% | |
| AACTTCCCTCTTGAGCTTTC+CGG | + | chr8_1:65727186-65727205 | None:intergenic | 45.0% | |
| GCTCAAGAGGGAAGTTATTC+TGG | - | chr8_1:65727190-65727209 | Msa1207890:intron | 45.0% | |
| GATGTTACGGACTTGGAAAC+TGG | - | chr8_1:65727398-65727417 | Msa1207890:intron | 45.0% | |
| CTTTGGACATTTGACCTCTG+TGG | - | chr8_1:65727486-65727505 | Msa1207890:intron | 45.0% | |
| TTTGACCTCTGTGGTTCAAC+CGG | - | chr8_1:65727495-65727514 | Msa1207890:intron | 45.0% | |
| !! | GAAAACAACTTGTTGGGCAG+GGG | + | chr8_1:65727658-65727677 | None:intergenic | 45.0% |
| !! | GGAAAACAACTTGTTGGGCA+GGG | + | chr8_1:65727659-65727678 | None:intergenic | 45.0% |
| !! | AGGAAAACAACTTGTTGGGC+AGG | + | chr8_1:65727660-65727679 | None:intergenic | 45.0% |
| TTGACCTCTGTGGTTCAACC+GGG | - | chr8_1:65727496-65727515 | Msa1207890:intron | 50.0% | |
| TGTTGGGCAGGGGAGTTAAG+AGG | + | chr8_1:65727648-65727667 | None:intergenic | 55.0% | |
| GTGGCCCGGTTGAACCACAG+AGG | + | chr8_1:65727503-65727522 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 65719059 | 65727758 | 65719059 | ID=Msa1207890;Name=Msa1207890 |
| chr8_1 | mRNA | 65719059 | 65727758 | 65719059 | ID=Msa1207890-mRNA-1;Parent=Msa1207890;Name=Msa1207890-mRNA-1;_AED=0.15;_eAED=0.15;_QI=9|1|1|1|1|1|17|359|564 |
| chr8_1 | exon | 65719059 | 65719474 | 65719059 | ID=Msa1207890-mRNA-1:exon:21613;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65719567 | 65719656 | 65719567 | ID=Msa1207890-mRNA-1:exon:21612;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65719747 | 65719837 | 65719747 | ID=Msa1207890-mRNA-1:exon:21611;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65720115 | 65720305 | 65720115 | ID=Msa1207890-mRNA-1:exon:21610;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65721021 | 65721095 | 65721021 | ID=Msa1207890-mRNA-1:exon:21609;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65721183 | 65721302 | 65721183 | ID=Msa1207890-mRNA-1:exon:21608;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65721444 | 65721539 | 65721444 | ID=Msa1207890-mRNA-1:exon:21607;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65721693 | 65721818 | 65721693 | ID=Msa1207890-mRNA-1:exon:21606;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65722952 | 65723048 | 65722952 | ID=Msa1207890-mRNA-1:exon:21605;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65724338 | 65724414 | 65724338 | ID=Msa1207890-mRNA-1:exon:21604;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65724524 | 65724622 | 65724524 | ID=Msa1207890-mRNA-1:exon:21603;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65724702 | 65724785 | 65724702 | ID=Msa1207890-mRNA-1:exon:21602;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65724881 | 65725072 | 65724881 | ID=Msa1207890-mRNA-1:exon:21601;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65725180 | 65725305 | 65725180 | ID=Msa1207890-mRNA-1:exon:21600;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65727370 | 65727402 | 65727370 | ID=Msa1207890-mRNA-1:exon:21599;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65727514 | 65727610 | 65727514 | ID=Msa1207890-mRNA-1:exon:21598;Parent=Msa1207890-mRNA-1 |
| chr8_1 | exon | 65727706 | 65727758 | 65727706 | ID=Msa1207890-mRNA-1:exon:21597;Parent=Msa1207890-mRNA-1 |
| chr8_1 | five_prime_UTR | 65727750 | 65727758 | 65727750 | ID=Msa1207890-mRNA-1:five_prime_utr;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65727706 | 65727749 | 65727706 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65727514 | 65727610 | 65727514 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65727370 | 65727402 | 65727370 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65725180 | 65725305 | 65725180 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65724881 | 65725072 | 65724881 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65724702 | 65724785 | 65724702 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65724524 | 65724622 | 65724524 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65724338 | 65724414 | 65724338 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65722952 | 65723048 | 65722952 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65721693 | 65721818 | 65721693 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65721444 | 65721539 | 65721444 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65721183 | 65721302 | 65721183 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65721021 | 65721095 | 65721021 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65720115 | 65720305 | 65720115 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65719747 | 65719837 | 65719747 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65719567 | 65719656 | 65719567 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | CDS | 65719418 | 65719474 | 65719418 | ID=Msa1207890-mRNA-1:cds;Parent=Msa1207890-mRNA-1 |
| chr8_1 | three_prime_UTR | 65719059 | 65719417 | 65719059 | ID=Msa1207890-mRNA-1:three_prime_utr;Parent=Msa1207890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
