Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433050 | XP_013464882.1 | 84.381 | 525 | 39 | 4 | 1 | 483 | 1 | 524 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433050 | A0A072VAY0 | 84.381 | 525 | 39 | 4 | 1 | 483 | 1 | 524 | 0.0 | 827 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218490 | Msa1433050 | 0.806548 | 7.796090e-50 | -8.615850e-47 |
| Msa0297330 | Msa1433050 | 0.895536 | 8.732520e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433050 | MtrunA17_Chr2g0320661 | 84.381 | 525 | 39 | 4 | 1 | 483 | 1 | 524 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1433050 | AT5G22820.2 | 45.114 | 481 | 223 | 9 | 33 | 483 | 60 | 529 | 1.42e-121 | 366 |
| Msa1433050 | AT5G22820.3 | 45.114 | 481 | 223 | 9 | 33 | 483 | 60 | 529 | 1.42e-121 | 366 |
| Msa1433050 | AT5G22820.1 | 47.343 | 414 | 189 | 6 | 33 | 426 | 60 | 464 | 6.88e-111 | 337 |
Find 107 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTATTATGTCAAATATTA+TGG | 0.200015 | tig0027224:-16192 | Msa1433050:CDS |
| GAGATTAGTATAGGAATTAT+TGG | 0.222571 | tig0027224:-18097 | Msa1433050:CDS |
| TGTGGATCATGGTACCTTTC+AGG | 0.233741 | tig0027224:+15849 | None:intergenic |
| CTATTCTCGTAGCTTAAAAT+TGG | 0.240580 | tig0027224:-19773 | Msa1433050:five_prime_UTR |
| TAAGAGTACATCTGAAAATA+TGG | 0.284963 | tig0027224:-19233 | Msa1433050:CDS |
| CTTCCAGATTCGTGCCTCTT+AGG | 0.294579 | tig0027224:-15232 | Msa1433050:intron |
| GCAAGGAGAATGTCAGGATT+TGG | 0.296219 | tig0027224:-19179 | Msa1433050:CDS |
| GCTTAACTGGTTGAGGCTTC+AGG | 0.305224 | tig0027224:+13690 | None:intergenic |
| TGCGGTACCTCAGCTTTATC+TGG | 0.309287 | tig0027224:+15561 | None:intergenic |
| TAACTCTTTGACGGCTTAAC+TGG | 0.310784 | tig0027224:+13677 | None:intergenic |
| AAGGAGGATGCTGAGAATAA+TGG | 0.324222 | tig0027224:-13862 | Msa1433050:CDS |
| ATATTTACCATGTGATATTT+CGG | 0.330665 | tig0027224:+15351 | None:intergenic |
| TTTGATTCAGTGGAACTTCA+TGG | 0.360064 | tig0027224:+18062 | None:intergenic |
| CAGTTGTCCAGACCAATCTT+TGG | 0.361160 | tig0027224:-13741 | Msa1433050:three_prime_UTR |
| GATAAGGAAGCTCTTGCCTT+TGG | 0.380614 | tig0027224:-19377 | Msa1433050:intron |
| AAGTTTATTCCACCTTGTTT+CGG | 0.383635 | tig0027224:-15095 | Msa1433050:CDS |
| AGGAGGATGCTGAGAATAAT+GGG | 0.389583 | tig0027224:-13861 | Msa1433050:CDS |
| ACCCATGCTGAAGCTTGGTT+TGG | 0.392183 | tig0027224:-15934 | Msa1433050:CDS |
| TTAATTCTTCGTGCTATTGA+AGG | 0.395736 | tig0027224:-15666 | Msa1433050:CDS |
| TCTTCTTCTTCTTCAATGGA+TGG | 0.396399 | tig0027224:+19704 | None:intergenic |
| CTTCCACCCATGCTGAAGCT+TGG | 0.397856 | tig0027224:-15939 | Msa1433050:CDS |
| CTCGGTCAACGGAGTTGCTT+CGG | 0.403237 | tig0027224:-19347 | Msa1433050:CDS |
| CAAGGAGAATGTCAGGATTT+GGG | 0.405190 | tig0027224:-19178 | Msa1433050:CDS |
| CACCTTGTTTCGGTTCTTGT+CGG | 0.406866 | tig0027224:-15085 | Msa1433050:CDS |
| AGATTAGTATAGGAATTATT+GGG | 0.409903 | tig0027224:-18096 | Msa1433050:CDS |
| AGTTATAGATGAACATTCTC+AGG | 0.417677 | tig0027224:-15637 | Msa1433050:CDS |
| TAATAGACTCACCACTTTGA+AGG | 0.430303 | tig0027224:+16242 | None:intergenic |
| GGTGATGGAATTGAACGTTC+TGG | 0.436756 | tig0027224:-19157 | Msa1433050:CDS |
| CATAATAAAGTAATTCTACT+TGG | 0.440478 | tig0027224:+13774 | None:intergenic |
| AGAAAGTCAGCAGAAAGCTT+TGG | 0.443296 | tig0027224:-15970 | Msa1433050:CDS |
| TCTTCAATGGATGGATTTGT+CGG | 0.444494 | tig0027224:+19713 | None:intergenic |
| TTCTCGTAGCTTAAAATTGG+AGG | 0.449038 | tig0027224:-19770 | Msa1433050:five_prime_UTR |
| AAAGTGGTGAGTCTATTAGA+TGG | 0.450250 | tig0027224:-16237 | Msa1433050:CDS |
| CATGTCAAACCTCCAAAGAT+TGG | 0.455428 | tig0027224:+13729 | None:intergenic |
| TATTTGACATAATACATGTT+CGG | 0.465259 | tig0027224:+16198 | None:intergenic |
| CAATGTGTTGACTCCTGTCC+TGG | 0.467526 | tig0027224:-15025 | Msa1433050:CDS |
| CTTGCCTTTGGATTCCGCCT+CGG | 0.471928 | tig0027224:-19365 | Msa1433050:CDS |
| TTGGATTCCGCCTCGGTCAA+CGG | 0.472032 | tig0027224:-19358 | Msa1433050:CDS |
| AATTGAACGTTCTGGTGCTT+CGG | 0.475047 | tig0027224:-19149 | Msa1433050:CDS |
| TCTCATGCAAGGAGAATGTC+AGG | 0.475462 | tig0027224:-19185 | Msa1433050:CDS |
| TAACCAGCATTGTGAATCAA+TGG | 0.475866 | tig0027224:-13894 | Msa1433050:CDS |
| CTAGCATCTGCTGTTGAACC+AGG | 0.481137 | tig0027224:+15007 | None:intergenic |
| GTCGACACTATTTGATTCAG+TGG | 0.487545 | tig0027224:+18052 | None:intergenic |
| TTGGTTATAGATAATAAAGA+AGG | 0.492848 | tig0027224:-19304 | Msa1433050:CDS |
| TGACCCTAGCCGAGGAGCCT+TGG | 0.498070 | tig0027224:-19323 | Msa1433050:CDS |
| ATAACCAAGGCTCCTCGGCT+AGG | 0.501362 | tig0027224:+19319 | None:intergenic |
| ATCTGCTGTTGAACCAGGAC+AGG | 0.502207 | tig0027224:+15012 | None:intergenic |
| GAATGTCAGGATTTGGGTGA+TGG | 0.503091 | tig0027224:-19172 | Msa1433050:CDS |
| AATCAAATAGTGTCGACAAA+AGG | 0.503284 | tig0027224:-18046 | Msa1433050:CDS |
| ATGCTACAGGAGATTAGTAT+AGG | 0.504550 | tig0027224:-18106 | Msa1433050:intron |
| TTCTTTATTATCTATAACCA+AGG | 0.505295 | tig0027224:+19306 | None:intergenic |
| TGGAAGCAAGAAATGCAGTC+TGG | 0.510958 | tig0027224:-15171 | Msa1433050:CDS |
| TTACCTTCTCTAAAAGCTGA+AGG | 0.511983 | tig0027224:+16149 | None:intergenic |
| CAAACCTCCAAAGATTGGTC+TGG | 0.513361 | tig0027224:+13734 | None:intergenic |
| GACAGGAGTCAACACATTGT+TGG | 0.513955 | tig0027224:+15029 | None:intergenic |
| GAATCAATGGATTGCTGTAA+AGG | 0.518691 | tig0027224:-13881 | Msa1433050:CDS |
| TAACCAAGGCTCCTCGGCTA+GGG | 0.521780 | tig0027224:+19320 | None:intergenic |
| TCCAAATCATCCGAAGCAAA+AGG | 0.522029 | tig0027224:+15190 | None:intergenic |
| TTTGAATCTTCTCTCATGCA+AGG | 0.526719 | tig0027224:-19196 | Msa1433050:CDS |
| TTTGACGGCTTAACTGGTTG+AGG | 0.534740 | tig0027224:+13683 | None:intergenic |
| TTGTCCAGACCAATCTTTGG+AGG | 0.536546 | tig0027224:-13738 | Msa1433050:three_prime_UTR |
| AATCCATTGATTCACAATGC+TGG | 0.539426 | tig0027224:+13891 | None:intergenic |
| AACCTCGTGTGATGAGGAAA+AGG | 0.540362 | tig0027224:+19644 | None:intergenic |
| TATCAATCAGACCACCTAAG+AGG | 0.544952 | tig0027224:+15218 | None:intergenic |
| GAACGTTCTGGTGCTTCGGT+TGG | 0.550806 | tig0027224:-19145 | Msa1433050:CDS |
| TGCCAAACCAAGCTTCAGCA+TGG | 0.553733 | tig0027224:+15932 | None:intergenic |
| TCTCGTAGCTTAAAATTGGA+GGG | 0.555905 | tig0027224:-19769 | Msa1433050:five_prime_UTR |
| TATCTATAACCAAGGCTCCT+CGG | 0.556855 | tig0027224:+19314 | None:intergenic |
| TCGTTACAAATTGATGCAGA+TGG | 0.558666 | tig0027224:+19274 | None:intergenic |
| GAGAACAGATTGTTAACCAT+GGG | 0.560749 | tig0027224:-16265 | Msa1433050:intron |
| AAACCAAGCTTCAGCATGGG+TGG | 0.563385 | tig0027224:+15936 | None:intergenic |
| TTCTGGTGCTTCGGTTGGTG+AGG | 0.569662 | tig0027224:-19140 | Msa1433050:CDS |
| AAGTGGTGAGTCTATTAGAT+GGG | 0.573874 | tig0027224:-16236 | Msa1433050:CDS |
| CTCACCACTTTGAAGGCCCA+TGG | 0.576240 | tig0027224:+16249 | None:intergenic |
| TTGCATGAGAGAAGATTCAA+AGG | 0.576865 | tig0027224:+19198 | None:intergenic |
| CCAGATTCGTGCCTCTTAGG+TGG | 0.577487 | tig0027224:-15229 | Msa1433050:intron |
| TGGATTTGTCGGAACCGCCA+TGG | 0.583005 | tig0027224:+19724 | None:intergenic |
| GTGATGAAAGAATGCCTGAA+AGG | 0.583242 | tig0027224:-15863 | Msa1433050:intron |
| AGGACTGATTGAGATAATTG+TGG | 0.585676 | tig0027224:-18026 | Msa1433050:CDS |
| GCAAAATCGAAACGATTCCA+TGG | 0.589737 | tig0027224:-19741 | Msa1433050:exon |
| TGGTTATAGATAATAAAGAA+GGG | 0.593998 | tig0027224:-19303 | Msa1433050:CDS |
| CATGTTTCACATAGGCATTG+AGG | 0.594745 | tig0027224:+17983 | None:intergenic |
| GTGGAACTTCATGGCAAGCA+AGG | 0.601090 | tig0027224:+18071 | None:intergenic |
| TGAGTCTATTAGATGGGCTG+AGG | 0.601705 | tig0027224:-16230 | Msa1433050:CDS |
| TTGACCGAGGCGGAATCCAA+AGG | 0.602244 | tig0027224:+19361 | None:intergenic |
| GAGAATAATGGGAATGCTGA+AGG | 0.603883 | tig0027224:-13850 | Msa1433050:CDS |
| GCCAAACCAAGCTTCAGCAT+GGG | 0.603907 | tig0027224:+15933 | None:intergenic |
| TGAGAACAGATTGTTAACCA+TGG | 0.623939 | tig0027224:-16266 | Msa1433050:intron |
| CATGTGATATTTCGGAAGCA+CGG | 0.628378 | tig0027224:+15359 | None:intergenic |
| CATACCGACATGTTTCACAT+AGG | 0.632373 | tig0027224:+17975 | None:intergenic |
| TTCCGACAAGAACCGAAACA+AGG | 0.636386 | tig0027224:+15083 | None:intergenic |
| GGTTATAGATAATAAAGAAG+GGG | 0.648327 | tig0027224:-19302 | Msa1433050:CDS |
| CGTGCTTCCGAAATATCACA+TGG | 0.652038 | tig0027224:-15358 | Msa1433050:intron |
| TGAGGAAAAGGATGATGTGT+GGG | 0.654125 | tig0027224:+19656 | None:intergenic |
| CGAAGCAACTCCGTTGACCG+AGG | 0.657317 | tig0027224:+19348 | None:intergenic |
| AATGCCTATGTGAAACATGT+CGG | 0.660409 | tig0027224:-17979 | Msa1433050:intron |
| TTAACCATGGGCCTTCAAAG+TGG | 0.665746 | tig0027224:-16253 | Msa1433050:CDS |
| TCAATGGATTGCTGTAAAGG+AGG | 0.666699 | tig0027224:-13878 | Msa1433050:CDS |
| AGCAACTCCGTTGACCGAGG+CGG | 0.671827 | tig0027224:+19351 | None:intergenic |
| GCTTCGGATGACCCTAGCCG+AGG | 0.672522 | tig0027224:-19331 | Msa1433050:CDS |
| AATATTTGCAATAAGAACTG+CGG | 0.674411 | tig0027224:+15399 | None:intergenic |
| CGACAAGAACCGAAACAAGG+TGG | 0.675348 | tig0027224:+15086 | None:intergenic |
| ATGAGGAAAAGGATGATGTG+TGG | 0.675873 | tig0027224:+19655 | None:intergenic |
| GATGATAACCTCGTGTGATG+AGG | 0.683936 | tig0027224:+19638 | None:intergenic |
| CAAGTTTCCAGATAAAGCTG+AGG | 0.689931 | tig0027224:-15568 | Msa1433050:intron |
| GAGCTCGAGCACGAGCACGA+TGG | 0.728685 | tig0027224:-19680 | Msa1433050:CDS |
| AAATCGAAACGATTCCATGG+CGG | 0.772293 | tig0027224:-19738 | Msa1433050:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAATTCAAAAGAAA+TGG | + | tig0027224:15746-15765 | None:intergenic | 10.0% |
| !! | TAATATATTTACTAATCTAT+TGG | + | tig0027224:16496-16515 | None:intergenic | 10.0% |
| !!! | ATGATAAAAATGATTTTGAT+TGG | + | tig0027224:14867-14886 | None:intergenic | 15.0% |
| !! | AAGATAAAACAAAAAAAACA+GGG | + | tig0027224:15594-15613 | None:intergenic | 15.0% |
| !!! | CTATTATACATTATTTTTGT+TGG | - | tig0027224:15620-15639 | Msa1433050:CDS | 15.0% |
| !! | TTGAAATTGTATAATTTCAA+AGG | - | tig0027224:16238-16257 | Msa1433050:CDS | 15.0% |
| !! | TGAAATTGTATAATTTCAAA+GGG | - | tig0027224:16239-16258 | Msa1433050:CDS | 15.0% |
| !! | ATGTATTATGTCAAATATTA+TGG | - | tig0027224:17260-17279 | Msa1433050:intron | 15.0% |
| !! | AAAATAAAAAACAAGCAAAA+TGG | + | tig0027224:17382-17401 | None:intergenic | 15.0% |
| !! | GATACATAATTTAATAAGTT+TGG | - | tig0027224:18773-18792 | Msa1433050:intron | 15.0% |
| !! | AAAAAAAATCCATATATACA+AGG | + | tig0027224:18931-18950 | None:intergenic | 15.0% |
| !! | ATTGACAATAATTAAATGAA+GGG | + | tig0027224:19276-19295 | None:intergenic | 15.0% |
| !! | AAGTAGAATTTGTAATTAAG+CGG | + | tig0027224:13847-13866 | None:intergenic | 20.0% |
| !! | TATAACACTATTGCATTATT+TGG | - | tig0027224:13941-13960 | Msa1433050:intron | 20.0% |
| !! | TTCTTTATTATCTATAACCA+AGG | + | tig0027224:14149-14168 | None:intergenic | 20.0% |
| !! | TTGGTTATAGATAATAAAGA+AGG | - | tig0027224:14148-14167 | Msa1433050:intron | 20.0% |
| !! | TGGTTATAGATAATAAAGAA+GGG | - | tig0027224:14149-14168 | Msa1433050:intron | 20.0% |
| !! | TTAATTACACCATCAAATTT+CGG | - | tig0027224:14694-14713 | Msa1433050:intron | 20.0% |
| !!! | TCATTTTTATAGCAATATCA+TGG | - | tig0027224:15039-15058 | Msa1433050:CDS | 20.0% |
| !! | TTCAGTTTATACAATCAAAA+CGG | + | tig0027224:15094-15113 | None:intergenic | 20.0% |
| !! | TTGTATAAACTGAAATTAGA+TGG | - | tig0027224:15100-15119 | Msa1433050:CDS | 20.0% |
| !! | TGTGAAACTAAAATATTATC+AGG | - | tig0027224:15275-15294 | Msa1433050:intron | 20.0% |
| !! | AGATTAGTATAGGAATTATT+GGG | - | tig0027224:15356-15375 | Msa1433050:intron | 20.0% |
| !! | GAAGATAAAACAAAAAAAAC+AGG | + | tig0027224:15595-15614 | None:intergenic | 20.0% |
| !! | TGTTAGTTATGTAAAACATA+AGG | + | tig0027224:15936-15955 | None:intergenic | 20.0% |
| !! | GAATTACATAATAGACATTT+GGG | + | tig0027224:16005-16024 | None:intergenic | 20.0% |
| !! | AGAATTACATAATAGACATT+TGG | + | tig0027224:16006-16025 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTTTGTATATGTC+TGG | - | tig0027224:16213-16232 | Msa1433050:CDS | 20.0% |
| !! | ATATCAATAAATTCACTTCA+TGG | + | tig0027224:16533-16552 | None:intergenic | 20.0% |
| !!! | TAATTGTTGCTTTATCTAAA+CGG | - | tig0027224:16714-16733 | Msa1433050:intron | 20.0% |
| !! | TATTTGACATAATACATGTT+CGG | + | tig0027224:17257-17276 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTAACAGAGTGT+AGG | - | tig0027224:17441-17460 | Msa1433050:intron | 20.0% |
| !!! | TTTATTTTTAACAGAGTGTA+GGG | - | tig0027224:17442-17461 | Msa1433050:intron | 20.0% |
| !! | AATTGGTATTAGAAGATAAT+AGG | + | tig0027224:17663-17682 | None:intergenic | 20.0% |
| !! | ACTGAATATCTTAAAATTTC+AGG | - | tig0027224:17748-17767 | Msa1433050:intron | 20.0% |
| !! | ATATTTACCATGTGATATTT+CGG | + | tig0027224:18104-18123 | None:intergenic | 20.0% |
| !!! | AAAAGATTTTACACATGATA+AGG | - | tig0027224:19004-19023 | Msa1433050:intron | 20.0% |
| !! | CATTGACAATAATTAAATGA+AGG | + | tig0027224:19277-19296 | None:intergenic | 20.0% |
| !! | CATTTAATTATTGTCAATGT+TGG | - | tig0027224:19278-19297 | Msa1433050:CDS | 20.0% |
| !! | CTAATGATCTATATGTATTT+AGG | - | tig0027224:19346-19365 | Msa1433050:CDS | 20.0% |
| !! | CATAATAAAGTAATTCTACT+TGG | + | tig0027224:19681-19700 | None:intergenic | 20.0% |
| !! | AAAGATTAATGATTAGTTGC+AGG | + | tig0027224:13919-13938 | None:intergenic | 25.0% |
| ! | ATCAAGGAGATTATATAACT+AGG | + | tig0027224:14058-14077 | None:intergenic | 25.0% |
| ! | GTTATATAATCTCCTTGATA+AGG | - | tig0027224:14059-14078 | Msa1433050:intron | 25.0% |
| ! | GGTTATAGATAATAAAGAAG+GGG | - | tig0027224:14150-14169 | Msa1433050:intron | 25.0% |
| !! | TAAGAGTACATCTGAAAATA+TGG | - | tig0027224:14219-14238 | Msa1433050:intron | 25.0% |
| !! | AAGAATATGGTTGTATTTTG+TGG | - | tig0027224:14344-14363 | Msa1433050:intron | 25.0% |
| !! | AGAATATGGTTGTATTTTGT+GGG | - | tig0027224:14345-14364 | Msa1433050:intron | 25.0% |
| !! | GATATTTGTGGAGATATTTT+AGG | - | tig0027224:14492-14511 | Msa1433050:intron | 25.0% |
| ! | TAGGAACTAACTTAAGAAAA+CGG | - | tig0027224:14511-14530 | Msa1433050:intron | 25.0% |
| ! | CAAAAGTGAGATTAATTTCT+AGG | + | tig0027224:14598-14617 | None:intergenic | 25.0% |
| !! | GGTTATAGCATTTTGTATTT+GGG | + | tig0027224:14897-14916 | None:intergenic | 25.0% |
| !! | AGGTTATAGCATTTTGTATT+TGG | + | tig0027224:14898-14917 | None:intergenic | 25.0% |
| ! | AAATACAAAATGCTATAACC+TGG | - | tig0027224:14897-14916 | Msa1433050:intron | 25.0% |
| ! | ATGATTGTTTGAATGTATTG+TGG | - | tig0027224:14966-14985 | Msa1433050:intron | 25.0% |
| ! | TAAGATATAAATACGTACCA+TGG | - | tig0027224:15227-15246 | Msa1433050:CDS | 25.0% |
| ! | TTTGTATTAATACATGCTAC+AGG | - | tig0027224:15333-15352 | Msa1433050:intron | 25.0% |
| ! | GAGATTAGTATAGGAATTAT+TGG | - | tig0027224:15355-15374 | Msa1433050:intron | 25.0% |
| !!! | TTTCTCTTTCATTTTTGTTG+AGG | - | tig0027224:15530-15549 | Msa1433050:intron | 25.0% |
| ! | AAAAAACAGGGATAACAATA+CGG | + | tig0027224:15582-15601 | None:intergenic | 25.0% |
| ! | TAATTTCTCTCTCTTGATTT+CGG | - | tig0027224:16138-16157 | Msa1433050:intron | 25.0% |
| ! | TCATGACTTAAATGACTAAA+TGG | + | tig0027224:16321-16340 | None:intergenic | 25.0% |
| ! | TAAAATCGATTAGCAAATCA+TGG | - | tig0027224:16660-16679 | Msa1433050:intron | 25.0% |
| ! | AAGACGCAAAAAAATATCTA+AGG | + | tig0027224:16835-16854 | None:intergenic | 25.0% |
| !! | ACAACACGCATAAAATTTTA+CGG | + | tig0027224:17100-17119 | None:intergenic | 25.0% |
| ! | TTCTGTAACAAAAACAATCT+TGG | - | tig0027224:17339-17358 | Msa1433050:intron | 25.0% |
| ! | TCTGTAACAAAAACAATCTT+GGG | - | tig0027224:17340-17359 | Msa1433050:intron | 25.0% |
| ! | CTAATTTCATTGATGCAAAA+TGG | + | tig0027224:17634-17653 | None:intergenic | 25.0% |
| ! | GTCAATAATGTTGTCATAAT+TGG | + | tig0027224:17680-17699 | None:intergenic | 25.0% |
| ! | AAGTGTTAACTACAATAATG+CGG | + | tig0027224:17912-17931 | None:intergenic | 25.0% |
| ! | GACATGAAATGAAAATGATT+TGG | - | tig0027224:17967-17986 | Msa1433050:intron | 25.0% |
| ! | AATATTTGCAATAAGAACTG+CGG | + | tig0027224:18056-18075 | None:intergenic | 25.0% |
| !! | TGATATATTTCCTTTTGCTT+CGG | - | tig0027224:18252-18271 | Msa1433050:intron | 25.0% |
| ! | AAGTGCAAATAACTAAATGA+AGG | + | tig0027224:18485-18504 | None:intergenic | 25.0% |
| ! | CAGAAATCCTCATAATATAA+TGG | - | tig0027224:19038-19057 | Msa1433050:intron | 25.0% |
| ! | GGACTTATAAATGTAATGAA+TGG | + | tig0027224:19255-19274 | None:intergenic | 25.0% |
| !! | TTATTGTCAATGTTGGTTAA+TGG | - | tig0027224:19285-19304 | Msa1433050:CDS | 25.0% |
| ! | AACCTAAATAACAATACATG+TGG | + | tig0027224:19461-19480 | None:intergenic | 25.0% |
| ! | GATAGATGTAAAAAAGTTGT+TGG | - | tig0027224:19637-19656 | Msa1433050:intron | 25.0% |
| !!! | GAGAATTTTTAACTCTTTGA+CGG | + | tig0027224:19787-19806 | None:intergenic | 25.0% |
| CTATTCTCGTAGCTTAAAAT+TGG | - | tig0027224:13679-13698 | Msa1433050:three_prime_UTR | 30.0% | |
| ! | GCATGGATTGAAAATTGAAA+TGG | + | tig0027224:13884-13903 | None:intergenic | 30.0% |
| ! | TGAGTTCTTTTGTATGTTCA+TGG | - | tig0027224:14624-14643 | Msa1433050:intron | 30.0% |
| TACTCAAAACCGAAATTTGA+TGG | + | tig0027224:14706-14725 | None:intergenic | 30.0% | |
| !! | AATCAAATAGTGTCGACAAA+AGG | - | tig0027224:15406-15425 | Msa1433050:CDS | 30.0% |
| ATACGGAAATAGTAACAAAC+AGG | + | tig0027224:15565-15584 | None:intergenic | 30.0% | |
| GTCAAAACATTTGATATAGC+AGG | + | tig0027224:15654-15673 | None:intergenic | 30.0% | |
| CAGAATAGATAAGGCATAAT+TGG | + | tig0027224:15722-15741 | None:intergenic | 30.0% | |
| AGAAATGGACAGAATAGATA+AGG | + | tig0027224:15731-15750 | None:intergenic | 30.0% | |
| !! | TCTCGTTTTGCATTGTTTTA+TGG | - | tig0027224:16046-16065 | Msa1433050:intron | 30.0% |
| AGAAATTAAAGCATATCCGT+AGG | + | tig0027224:16126-16145 | None:intergenic | 30.0% | |
| ! | CATAGAAAGCTGATATTTTG+TGG | - | tig0027224:16173-16192 | Msa1433050:CDS | 30.0% |
| !!! | TAGACTTATTTTGCACAGTT+GGG | - | tig0027224:16276-16295 | Msa1433050:intron | 30.0% |
| TTAAATGACTAAATGGCATG+AGG | + | tig0027224:16314-16333 | None:intergenic | 30.0% | |
| ! | AAGAAGTGTATTGCATAGAA+AGG | + | tig0027224:16382-16401 | None:intergenic | 30.0% |
| TAGACGTTATATTGGAGAAA+GGG | + | tig0027224:16442-16461 | None:intergenic | 30.0% | |
| CAAAACAAATTCAACATCCA+TGG | + | tig0027224:16465-16484 | None:intergenic | 30.0% | |
| TCAATAAATTCACTTCATGG+TGG | + | tig0027224:16530-16549 | None:intergenic | 30.0% | |
| CTAAGGTTGAGATAAAATTG+AGG | + | tig0027224:16818-16837 | None:intergenic | 30.0% | |
| !!! | AGGGTGTTATTTTAACCTTT+TGG | - | tig0027224:16920-16939 | Msa1433050:intron | 30.0% |
| TTACCCTATTCCTATATATC+AGG | + | tig0027224:17061-17080 | None:intergenic | 30.0% | |
| TTGTTAGTGACTCAAAAACA+AGG | + | tig0027224:17408-17427 | None:intergenic | 30.0% | |
| TTTCATTGATGCAAAATGGA+GGG | + | tig0027224:17630-17649 | None:intergenic | 30.0% | |
| ATTTCATTGATGCAAAATGG+AGG | + | tig0027224:17631-17650 | None:intergenic | 30.0% | |
| TAACTATTCATCAATCAGTC+CGG | - | tig0027224:17709-17728 | Msa1433050:intron | 30.0% | |
| ! | TTAATTCTTCGTGCTATTGA+AGG | - | tig0027224:17786-17805 | Msa1433050:intron | 30.0% |
| AGTTATAGATGAACATTCTC+AGG | - | tig0027224:17815-17834 | Msa1433050:intron | 30.0% | |
| ! | TTTTCATCTTGTATGTGACA+TGG | - | tig0027224:17860-17879 | Msa1433050:intron | 30.0% |
| AGCGCATATTAAATAACAAG+AGG | + | tig0027224:17936-17955 | None:intergenic | 30.0% | |
| TTTGGACAACTGAAAAACAA+TGG | - | tig0027224:17985-18004 | Msa1433050:CDS | 30.0% | |
| ACTGAAAAACAATGGTGAAT+TGG | - | tig0027224:17993-18012 | Msa1433050:CDS | 30.0% | |
| AAATATCGCATTGAAGTCTA+TGG | + | tig0027224:18144-18163 | None:intergenic | 30.0% | |
| ! | AAGTTTATTCCACCTTGTTT+CGG | - | tig0027224:18357-18376 | Msa1433050:intron | 30.0% |
| GAAATTTGAATCACGTTTCT+TGG | - | tig0027224:18546-18565 | Msa1433050:intron | 30.0% | |
| TAGTGCAACAAGAATTAAGA+TGG | + | tig0027224:18645-18664 | None:intergenic | 30.0% | |
| ! | CTTGTTGCACTAAATTCTTT+TGG | - | tig0027224:18653-18672 | Msa1433050:intron | 30.0% |
| AGAAAAATAAACCCGATATG+AGG | - | tig0027224:18812-18831 | Msa1433050:intron | 30.0% | |
| GTAACAGCCATTATATTATG+AGG | + | tig0027224:19048-19067 | None:intergenic | 30.0% | |
| CATCACTATAATTATGCTTG+TGG | + | tig0027224:19103-19122 | None:intergenic | 30.0% | |
| CACAAGCATAATTATAGTGA+TGG | - | tig0027224:19101-19120 | Msa1433050:intron | 30.0% | |
| GCATAATTATAGTGATGGTT+AGG | - | tig0027224:19106-19125 | Msa1433050:intron | 30.0% | |
| TAACAAGATGGAAGTCAAAA+AGG | + | tig0027224:19403-19422 | None:intergenic | 30.0% | |
| TAAATAACAATACATGTGGC+TGG | + | tig0027224:19457-19476 | None:intergenic | 30.0% | |
| !! | AGCCACATGTATTGTTATTT+AGG | - | tig0027224:19456-19475 | Msa1433050:intron | 30.0% |
| TATTTGTTTCCCTTTACCTT+TGG | - | tig0027224:19517-19536 | Msa1433050:intron | 30.0% | |
| GCTATTATTCCAAAGGTAAA+GGG | + | tig0027224:19529-19548 | None:intergenic | 30.0% | |
| AGCTATTATTCCAAAGGTAA+AGG | + | tig0027224:19530-19549 | None:intergenic | 30.0% | |
| TTCTCGTAGCTTAAAATTGG+AGG | - | tig0027224:13682-13701 | Msa1433050:three_prime_UTR | 35.0% | |
| TCTCGTAGCTTAAAATTGGA+GGG | - | tig0027224:13683-13702 | Msa1433050:three_prime_UTR | 35.0% | |
| ! | TCTTCAATGGATGGATTTGT+CGG | + | tig0027224:13742-13761 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCAATGGA+TGG | + | tig0027224:13751-13770 | None:intergenic | 35.0% | |
| CTCTTCTTCTTCTTCTTCAA+TGG | + | tig0027224:13755-13774 | None:intergenic | 35.0% | |
| TCGTTACAAATTGATGCAGA+TGG | + | tig0027224:14181-14200 | None:intergenic | 35.0% | |
| TTGCATGAGAGAAGATTCAA+AGG | + | tig0027224:14257-14276 | None:intergenic | 35.0% | |
| TTTGAATCTTCTCTCATGCA+AGG | - | tig0027224:14256-14275 | Msa1433050:intron | 35.0% | |
| TACACATGCATCCAACAAAT+TGG | - | tig0027224:14461-14480 | Msa1433050:intron | 35.0% | |
| ACACATGCATCCAACAAATT+GGG | - | tig0027224:14462-14481 | Msa1433050:intron | 35.0% | |
| ATCTACATAGCCCAATTTGT+TGG | + | tig0027224:14475-14494 | None:intergenic | 35.0% | |
| TTGGGCTATGTAGATATTTG+TGG | - | tig0027224:14480-14499 | Msa1433050:intron | 35.0% | |
| !! | GCTCTTAAATGTGATTTGCT+TGG | - | tig0027224:14533-14552 | Msa1433050:intron | 35.0% |
| ! | GATTAATTTCTAGGCACAGA+CGG | + | tig0027224:14589-14608 | None:intergenic | 35.0% |
| !! | GAGTTTCACTCAGTTACTTT+TGG | - | tig0027224:14774-14793 | Msa1433050:intron | 35.0% |
| ACAAAATGCTATAACCTGGT+AGG | - | tig0027224:14901-14920 | Msa1433050:intron | 35.0% | |
| ACTCGAAGCTTGATTATGAT+GGG | + | tig0027224:15020-15039 | None:intergenic | 35.0% | |
| GACGTAAAGAAATGAGAAAG+TGG | + | tig0027224:15065-15084 | None:intergenic | 35.0% | |
| AAGTATTAGATTCTCCACCT+GGG | + | tig0027224:15147-15166 | None:intergenic | 35.0% | |
| ATGCTACAGGAGATTAGTAT+AGG | - | tig0027224:15346-15365 | Msa1433050:intron | 35.0% | |
| TTTGATTCAGTGGAACTTCA+TGG | + | tig0027224:15393-15412 | None:intergenic | 35.0% | |
| AGGACTGATTGAGATAATTG+TGG | - | tig0027224:15426-15445 | Msa1433050:intron | 35.0% | |
| AATGCCTATGTGAAACATGT+CGG | - | tig0027224:15473-15492 | Msa1433050:intron | 35.0% | |
| GAGTTCAAAGTCTATCATAG+AGG | + | tig0027224:15825-15844 | None:intergenic | 35.0% | |
| AGAAACTTTGTTAGGAGGAT+GGG | + | tig0027224:15891-15910 | None:intergenic | 35.0% | |
| TAGAAACTTTGTTAGGAGGA+TGG | + | tig0027224:15892-15911 | None:intergenic | 35.0% | |
| !! | GCTTTAGAAACTTTGTTAGG+AGG | + | tig0027224:15896-15915 | None:intergenic | 35.0% |
| !! | GGAGCTTTAGAAACTTTGTT+AGG | + | tig0027224:15899-15918 | None:intergenic | 35.0% |
| !!! | CATAAGGTTTTGAGCTTAGA+TGG | + | tig0027224:15920-15939 | None:intergenic | 35.0% |
| TAATTCTTGTCCATCAACCA+GGG | - | tig0027224:16019-16038 | Msa1433050:intron | 35.0% | |
| AGTAATCTGTGCAGGATTTA+TGG | - | tig0027224:16083-16102 | Msa1433050:intron | 35.0% | |
| !!! | CTAGACTTATTTTGCACAGT+TGG | - | tig0027224:16275-16294 | Msa1433050:intron | 35.0% |
| AGACGTTATATTGGAGAAAG+GGG | + | tig0027224:16441-16460 | None:intergenic | 35.0% | |
| GTAGACGTTATATTGGAGAA+AGG | + | tig0027224:16443-16462 | None:intergenic | 35.0% | |
| ATCCATGGTAGACGTTATAT+TGG | + | tig0027224:16450-16469 | None:intergenic | 35.0% | |
| !! | TTGTTGCTTTATCTAAACGG+CGG | - | tig0027224:16717-16736 | Msa1433050:intron | 35.0% |
| CCATTTAGTCCATTTAGTCA+TGG | + | tig0027224:16862-16881 | None:intergenic | 35.0% | |
| !! | CCATGACTAAATGGACTAAA+TGG | - | tig0027224:16859-16878 | Msa1433050:intron | 35.0% |
| AATAACACCCTGTGCAAAAT+GGG | + | tig0027224:16911-16930 | None:intergenic | 35.0% | |
| AAATAACACCCTGTGCAAAA+TGG | + | tig0027224:16912-16931 | None:intergenic | 35.0% | |
| !!! | TCTGCTCATGTTTTTAGAAC+TGG | - | tig0027224:16946-16965 | Msa1433050:intron | 35.0% |
| TCTGAGTCATGCAGAAATAT+TGG | - | tig0027224:16974-16993 | Msa1433050:intron | 35.0% | |
| GATATACCAGCCTGATATAT+AGG | - | tig0027224:17048-17067 | Msa1433050:intron | 35.0% | |
| CAGCCTGATATATAGGAATA+GGG | - | tig0027224:17055-17074 | Msa1433050:intron | 35.0% | |
| ! | CACGCATAAAATTTTACGGA+TGG | + | tig0027224:17096-17115 | None:intergenic | 35.0% |
| TGAGAACAGATTGTTAACCA+TGG | - | tig0027224:17186-17205 | Msa1433050:intron | 35.0% | |
| GAGAACAGATTGTTAACCAT+GGG | - | tig0027224:17187-17206 | Msa1433050:intron | 35.0% | |
| TAATAGACTCACCACTTTGA+AGG | + | tig0027224:17213-17232 | None:intergenic | 35.0% | |
| AAAGTGGTGAGTCTATTAGA+TGG | - | tig0027224:17215-17234 | Msa1433050:intron | 35.0% | |
| AAGTGGTGAGTCTATTAGAT+GGG | - | tig0027224:17216-17235 | Msa1433050:intron | 35.0% | |
| ! | TTACCTTCTCTAAAAGCTGA+AGG | + | tig0027224:17306-17325 | None:intergenic | 35.0% |
| GTAACAAAAACAATCTTGGG+AGG | - | tig0027224:17343-17362 | Msa1433050:intron | 35.0% | |
| ACTTATTGTTTGCGATTCTG+AGG | - | tig0027224:18501-18520 | Msa1433050:intron | 35.0% | |
| GAATCACGTTTCTTGGAATT+AGG | - | tig0027224:18553-18572 | Msa1433050:intron | 35.0% | |
| ! | TAAATTCTTTTGGCCAGAAG+TGG | - | tig0027224:18663-18682 | Msa1433050:intron | 35.0% |
| TTACTACTACTAACCACTTC+TGG | + | tig0027224:18679-18698 | None:intergenic | 35.0% | |
| ! | CATGTAAATGATTTTGCGCT+GGG | + | tig0027224:18869-18888 | None:intergenic | 35.0% |
| ! | TCATGTAAATGATTTTGCGC+TGG | + | tig0027224:18870-18889 | None:intergenic | 35.0% |
| ! | GTCTTACAGCCTTGTATATA+TGG | - | tig0027224:18919-18938 | Msa1433050:intron | 35.0% |
| TAACAGCAATACTAGGGAAA+CGG | + | tig0027224:19156-19175 | None:intergenic | 35.0% | |
| GGACTATAACAGCAATACTA+GGG | + | tig0027224:19162-19181 | None:intergenic | 35.0% | |
| TGGACTATAACAGCAATACT+AGG | + | tig0027224:19163-19182 | None:intergenic | 35.0% | |
| ! | TGTTGGTTAATGGTTCCTAA+AGG | - | tig0027224:19295-19314 | Msa1433050:CDS | 35.0% |
| GTTGGTTAATGGTTCCTAAA+GGG | - | tig0027224:19296-19315 | Msa1433050:CDS | 35.0% | |
| CAATTTATAATCAGATGCGC+TGG | + | tig0027224:19434-19453 | None:intergenic | 35.0% | |
| CTCATGAGCTATTATTCCAA+AGG | + | tig0027224:19536-19555 | None:intergenic | 35.0% | |
| TAACCAGCATTGTGAATCAA+TGG | - | tig0027224:19558-19577 | Msa1433050:intron | 35.0% | |
| !! | AATCCATTGATTCACAATGC+TGG | + | tig0027224:19564-19583 | None:intergenic | 35.0% |
| !! | GAATCAATGGATTGCTGTAA+AGG | - | tig0027224:19571-19590 | Msa1433050:intron | 35.0% |
| GCAAAATCGAAACGATTCCA+TGG | - | tig0027224:13711-13730 | Msa1433050:three_prime_UTR | 40.0% | |
| AAATCGAAACGATTCCATGG+CGG | - | tig0027224:13714-13733 | Msa1433050:three_prime_UTR | 40.0% | |
| TGAGGAAAAGGATGATGTGT+GGG | + | tig0027224:13799-13818 | None:intergenic | 40.0% | |
| ATGAGGAAAAGGATGATGTG+TGG | + | tig0027224:13800-13819 | None:intergenic | 40.0% | |
| GCAGGTAATTGAAATGAGCA+TGG | + | tig0027224:13901-13920 | None:intergenic | 40.0% | |
| TATCTATAACCAAGGCTCCT+CGG | + | tig0027224:14141-14160 | None:intergenic | 40.0% | |
| CAAGGAGAATGTCAGGATTT+GGG | - | tig0027224:14274-14293 | Msa1433050:intron | 40.0% | |
| AATTGAACGTTCTGGTGCTT+CGG | - | tig0027224:14303-14322 | Msa1433050:intron | 40.0% | |
| GAGGATGTATGGGAAGAATA+TGG | - | tig0027224:14331-14350 | Msa1433050:intron | 40.0% | |
| TAAAACACATGCGGAACTCA+TGG | - | tig0027224:14381-14400 | Msa1433050:intron | 40.0% | |
| !! | TGGTACTGCTCTACTTTTGT+TGG | - | tig0027224:14401-14420 | Msa1433050:intron | 40.0% |
| !! | GGTACTGCTCTACTTTTGTT+GGG | - | tig0027224:14402-14421 | Msa1433050:intron | 40.0% |
| ! | TCTCCAAAATGTCACTTGTG+TGG | - | tig0027224:14926-14945 | Msa1433050:intron | 40.0% |
| ! | CTCCAAAATGTCACTTGTGT+GGG | - | tig0027224:14927-14946 | Msa1433050:intron | 40.0% |
| !! | CTTGATTATGATGGGTAGAG+TGG | + | tig0027224:15012-15031 | None:intergenic | 40.0% |
| GACTCGAAGCTTGATTATGA+TGG | + | tig0027224:15021-15040 | None:intergenic | 40.0% | |
| AGTATTAGATTCTCCACCTG+GGG | + | tig0027224:15146-15165 | None:intergenic | 40.0% | |
| CAAGTATTAGATTCTCCACC+TGG | + | tig0027224:15148-15167 | None:intergenic | 40.0% | |
| AAAGAATGCAGTCTGAACCA+TGG | + | tig0027224:15247-15266 | None:intergenic | 40.0% | |
| GTCGACACTATTTGATTCAG+TGG | + | tig0027224:15403-15422 | None:intergenic | 40.0% | |
| ! | CATGTTTCACATAGGCATTG+AGG | + | tig0027224:15472-15491 | None:intergenic | 40.0% |
| CATACCGACATGTTTCACAT+AGG | + | tig0027224:15480-15499 | None:intergenic | 40.0% | |
| TAACTCAGTAACCTCTTGAC+AGG | + | tig0027224:15784-15803 | None:intergenic | 40.0% | |
| GTAATTCTTGTCCATCAACC+AGG | - | tig0027224:16018-16037 | Msa1433050:intron | 40.0% | |
| ATGCAAAACGAGATAAACCC+TGG | + | tig0027224:16039-16058 | None:intergenic | 40.0% | |
| TTTCACAGAGTAATCTGTGC+AGG | - | tig0027224:16075-16094 | Msa1433050:intron | 40.0% | |
| AATCTGTGCAGGATTTATGG+AGG | - | tig0027224:16086-16105 | Msa1433050:intron | 40.0% | |
| CAGGATTTATGGAGGATAGT+AGG | - | tig0027224:16094-16113 | Msa1433050:intron | 40.0% | |
| !! | GGATAGTAGGTTTTGTCCTA+CGG | - | tig0027224:16107-16126 | Msa1433050:intron | 40.0% |
| TTTCTCTCTCTTGATTTCGG+AGG | - | tig0027224:16141-16160 | Msa1433050:intron | 40.0% | |
| TATTGCATAGAAAGGACAGC+AGG | + | tig0027224:16374-16393 | None:intergenic | 40.0% | |
| GAGAGGAAACATGTTATGAG+GGG | + | tig0027224:16419-16438 | None:intergenic | 40.0% | |
| GGAGAGGAAACATGTTATGA+GGG | + | tig0027224:16420-16439 | None:intergenic | 40.0% | |
| TTATATTGGAGAAAGGGGAG+AGG | + | tig0027224:16436-16455 | None:intergenic | 40.0% | |
| CTCCAATATAACGTCTACCA+TGG | - | tig0027224:16445-16464 | Msa1433050:intron | 40.0% | |
| GTCTTGCATCCATGACTAAA+TGG | - | tig0027224:16850-16869 | Msa1433050:intron | 40.0% | |
| !! | AATGGACTAAATGGAGCATG+AGG | - | tig0027224:16868-16887 | Msa1433050:intron | 40.0% |
| ACTAAATGGAGCATGAGGTA+TGG | - | tig0027224:16873-16892 | Msa1433050:intron | 40.0% | |
| CCTATTCCTATATATCAGGC+TGG | + | tig0027224:17057-17076 | None:intergenic | 40.0% | |
| CCAGCCTGATATATAGGAAT+AGG | - | tig0027224:17054-17073 | Msa1433050:intron | 40.0% | |
| !! | GAACCTTCAGCTTTTAGAGA+AGG | - | tig0027224:17300-17319 | Msa1433050:intron | 40.0% |
| AGAAAGTCAGCAGAAAGCTT+TGG | - | tig0027224:17482-17501 | Msa1433050:intron | 40.0% | |
| GTGATGAAAGAATGCCTGAA+AGG | - | tig0027224:17589-17608 | Msa1433050:intron | 40.0% | |
| AGTTGTCAGATCAATTCCAC+CGG | + | tig0027224:17731-17750 | None:intergenic | 40.0% | |
| CAAGTTTCCAGATAAAGCTG+AGG | - | tig0027224:17884-17903 | Msa1433050:intron | 40.0% | |
| GAATTGGTCATATCTCCTGT+AGG | - | tig0027224:18009-18028 | Msa1433050:CDS | 40.0% | |
| CATGTGATATTTCGGAAGCA+CGG | + | tig0027224:18096-18115 | None:intergenic | 40.0% | |
| TATCAATCAGACCACCTAAG+AGG | + | tig0027224:18237-18256 | None:intergenic | 40.0% | |
| ! | TCCTTTTGCTTCGGATGATT+TGG | - | tig0027224:18261-18280 | Msa1433050:CDS | 40.0% |
| TCCAAATCATCCGAAGCAAA+AGG | + | tig0027224:18265-18284 | None:intergenic | 40.0% | |
| TTCAATTCCTGCCATCCAAA+GGG | + | tig0027224:18529-18548 | None:intergenic | 40.0% | |
| TTTCAATTCCTGCCATCCAA+AGG | + | tig0027224:18530-18549 | None:intergenic | 40.0% | |
| TTCTGCTAACACCTCATATC+GGG | + | tig0027224:18826-18845 | None:intergenic | 40.0% | |
| CTTCTGCTAACACCTCATAT+CGG | + | tig0027224:18827-18846 | None:intergenic | 40.0% | |
| CACATGATAAGGAACATGTG+TGG | - | tig0027224:19015-19034 | Msa1433050:intron | 40.0% | |
| TGGACATTCTCAGTCAAAGA+CGG | + | tig0027224:19083-19102 | None:intergenic | 40.0% | |
| CAGTGAAATCAAATGTGCAG+TGG | + | tig0027224:19183-19202 | None:intergenic | 40.0% | |
| TGCAACCAACTATGATTGTG+TGG | - | tig0027224:19201-19220 | Msa1433050:CDS | 40.0% | |
| AACAGCCACACAATCATAGT+TGG | + | tig0027224:19209-19228 | None:intergenic | 40.0% | |
| CTGCTCAAGAATTTCCCTTT+AGG | + | tig0027224:19313-19332 | None:intergenic | 40.0% | |
| !! | TCAATGGATTGCTGTAAAGG+AGG | - | tig0027224:19574-19593 | Msa1433050:intron | 40.0% |
| AAGGAGGATGCTGAGAATAA+TGG | - | tig0027224:19590-19609 | Msa1433050:intron | 40.0% | |
| AGGAGGATGCTGAGAATAAT+GGG | - | tig0027224:19591-19610 | Msa1433050:intron | 40.0% | |
| ! | GAGAATAATGGGAATGCTGA+AGG | - | tig0027224:19602-19621 | Msa1433050:intron | 40.0% |
| CATGTCAAACCTCCAAAGAT+TGG | + | tig0027224:19726-19745 | None:intergenic | 40.0% | |
| TAACTCTTTGACGGCTTAAC+TGG | + | tig0027224:19778-19797 | None:intergenic | 40.0% | |
| ! | ATCCTTTTCCTCATCACACG+AGG | - | tig0027224:13806-13825 | Msa1433050:CDS | 45.0% |
| AACCTCGTGTGATGAGGAAA+AGG | + | tig0027224:13811-13830 | None:intergenic | 45.0% | |
| GATGATAACCTCGTGTGATG+AGG | + | tig0027224:13817-13836 | None:intergenic | 45.0% | |
| AGGCAAGAGCTTCCTTATCA+AGG | + | tig0027224:14074-14093 | None:intergenic | 45.0% | |
| GATAAGGAAGCTCTTGCCTT+TGG | - | tig0027224:14075-14094 | Msa1433050:intron | 45.0% | |
| TCTCATGCAAGGAGAATGTC+AGG | - | tig0027224:14267-14286 | Msa1433050:intron | 45.0% | |
| GCAAGGAGAATGTCAGGATT+TGG | - | tig0027224:14273-14292 | Msa1433050:intron | 45.0% | |
| GAATGTCAGGATTTGGGTGA+TGG | - | tig0027224:14280-14299 | Msa1433050:intron | 45.0% | |
| !! | GGTGATGGAATTGAACGTTC+TGG | - | tig0027224:14295-14314 | Msa1433050:intron | 45.0% |
| !! | TTCGGTTGGTGAGGATGTAT+GGG | - | tig0027224:14321-14340 | Msa1433050:intron | 45.0% |
| AGCTGCCAGTAAAACACATG+CGG | - | tig0027224:14372-14391 | Msa1433050:intron | 45.0% | |
| ! | GAGTTCCGCATGTGTTTTAC+TGG | + | tig0027224:14380-14399 | None:intergenic | 45.0% |
| !! | ACATTTTGGAGAGACCTACC+AGG | + | tig0027224:14918-14937 | None:intergenic | 45.0% |
| ! | AGCCCACACAAGTGACATTT+TGG | + | tig0027224:14932-14951 | None:intergenic | 45.0% |
| !! | TATGATGGGTAGAGTGGTCA+AGG | + | tig0027224:15006-15025 | None:intergenic | 45.0% |
| TTTCTGTGATCTAATCCCCC+AGG | - | tig0027224:15127-15146 | Msa1433050:CDS | 45.0% | |
| GTATTAGATTCTCCACCTGG+GGG | + | tig0027224:15145-15164 | None:intergenic | 45.0% | |
| CTTGACAGGCAAGTTCATCA+AGG | + | tig0027224:15770-15789 | None:intergenic | 45.0% | |
| TGATGAACTTGCCTGTCAAG+AGG | - | tig0027224:15770-15789 | Msa1433050:intron | 45.0% | |
| CTTTGTTAGGAGGATGGGAA+AGG | + | tig0027224:15886-15905 | None:intergenic | 45.0% | |
| ACGAGATAAACCCTGGTTGA+TGG | + | tig0027224:16032-16051 | None:intergenic | 45.0% | |
| TAAGTCATGATGCATGCACG+TGG | - | tig0027224:16331-16350 | Msa1433050:intron | 45.0% | |
| GGGAGAGGAAACATGTTATG+AGG | + | tig0027224:16421-16440 | None:intergenic | 45.0% | |
| TTTATCTAAACGGCGGTGAG+CGG | - | tig0027224:16724-16743 | Msa1433050:intron | 45.0% | |
| ! | AAGAAGCGTACTGCACAGAA+AGG | - | tig0027224:16760-16779 | Msa1433050:intron | 45.0% |
| ! | AGAAGCGTACTGCACAGAAA+GGG | - | tig0027224:16761-16780 | Msa1433050:intron | 45.0% |
| AACATGAGCAGAACGCCAAA+AGG | + | tig0027224:16938-16957 | None:intergenic | 45.0% | |
| ! | GTGTGCAGGCTCTTCTTTTA+TGG | + | tig0027224:17027-17046 | None:intergenic | 45.0% |
| TTAACCATGGGCCTTCAAAG+TGG | - | tig0027224:17199-17218 | Msa1433050:intron | 45.0% | |
| !! | TGAGTCTATTAGATGGGCTG+AGG | - | tig0027224:17222-17241 | Msa1433050:intron | 45.0% |
| TGTGGATCATGGTACCTTTC+AGG | + | tig0027224:17606-17625 | None:intergenic | 45.0% | |
| AAATGGAGGGTTGTGGATCA+TGG | + | tig0027224:17617-17636 | None:intergenic | 45.0% | |
| TGATGCAAAATGGAGGGTTG+TGG | + | tig0027224:17624-17643 | None:intergenic | 45.0% | |
| CTATTCATCAATCAGTCCGG+TGG | - | tig0027224:17712-17731 | Msa1433050:intron | 45.0% | |
| TGGTCATATCTCCTGTAGGT+CGG | - | tig0027224:18013-18032 | Msa1433050:CDS | 45.0% | |
| CGTGCTTCCGAAATATCACA+TGG | - | tig0027224:18094-18113 | Msa1433050:CDS | 45.0% | |
| TGGAAGCAAGAAATGCAGTC+TGG | - | tig0027224:18281-18300 | Msa1433050:CDS | 45.0% | |
| ! | CACCTTGTTTCGGTTCTTGT+CGG | - | tig0027224:18367-18386 | Msa1433050:intron | 45.0% |
| TTCCGACAAGAACCGAAACA+AGG | + | tig0027224:18372-18391 | None:intergenic | 45.0% | |
| GACAGGAGTCAACACATTGT+TGG | + | tig0027224:18426-18445 | None:intergenic | 45.0% | |
| TCAATTCCTGCCATCCAAAG+GGG | + | tig0027224:18528-18547 | None:intergenic | 45.0% | |
| ! | TTATAATCAGATGCGCTGGC+TGG | + | tig0027224:19430-19449 | None:intergenic | 45.0% |
| CAGTTGTCCAGACCAATCTT+TGG | - | tig0027224:19711-19730 | Msa1433050:CDS | 45.0% | |
| TTGTCCAGACCAATCTTTGG+AGG | - | tig0027224:19714-19733 | Msa1433050:CDS | 45.0% | |
| ! | CAAACCTCCAAAGATTGGTC+TGG | + | tig0027224:19721-19740 | None:intergenic | 45.0% |
| TTTGACGGCTTAACTGGTTG+AGG | + | tig0027224:19772-19791 | None:intergenic | 45.0% | |
| !!! | AATGTTAATTTTTTTTTTTT+TGG | - | tig0027224:16579-16598 | Msa1433050:intron | 5.0% |
| !! | CTTCGGTTGGTGAGGATGTA+TGG | - | tig0027224:14320-14339 | Msa1433050:intron | 50.0% |
| GTGGAACTTCATGGCAAGCA+AGG | + | tig0027224:15384-15403 | None:intergenic | 50.0% | |
| GAAGCGTACTGCACAGAAAG+GGG | - | tig0027224:16762-16781 | Msa1433050:intron | 50.0% | |
| ! | TACCCGATCCCATTTTGCAC+AGG | - | tig0027224:16900-16919 | Msa1433050:intron | 50.0% |
| ! | ACCCGATCCCATTTTGCACA+GGG | - | tig0027224:16901-16920 | Msa1433050:intron | 50.0% |
| ACCCTGTGCAAAATGGGATC+GGG | + | tig0027224:16905-16924 | None:intergenic | 50.0% | |
| CACCCTGTGCAAAATGGGAT+CGG | + | tig0027224:16906-16925 | None:intergenic | 50.0% | |
| AGGCTGGTATATCTGTGTGC+AGG | + | tig0027224:17041-17060 | None:intergenic | 50.0% | |
| TGCGTGTTGTGCTGCAAACT+AGG | - | tig0027224:17110-17129 | Msa1433050:intron | 50.0% | |
| AAACCAAGCTTCAGCATGGG+TGG | + | tig0027224:17519-17538 | None:intergenic | 50.0% | |
| ACCCATGCTGAAGCTTGGTT+TGG | - | tig0027224:17518-17537 | Msa1433050:intron | 50.0% | |
| GCCAAACCAAGCTTCAGCAT+GGG | + | tig0027224:17522-17541 | None:intergenic | 50.0% | |
| TGCCAAACCAAGCTTCAGCA+TGG | + | tig0027224:17523-17542 | None:intergenic | 50.0% | |
| ! | TGCGGTACCTCAGCTTTATC+TGG | + | tig0027224:17894-17913 | None:intergenic | 50.0% |
| GGTCATATCTCCTGTAGGTC+GGG | - | tig0027224:18014-18033 | Msa1433050:CDS | 50.0% | |
| ! | CTAAGAGGCACGAATCTGGA+AGG | + | tig0027224:18222-18241 | None:intergenic | 50.0% |
| CTTCCAGATTCGTGCCTCTT+AGG | - | tig0027224:18220-18239 | Msa1433050:intron | 50.0% | |
| CGACAAGAACCGAAACAAGG+TGG | + | tig0027224:18369-18388 | None:intergenic | 50.0% | |
| !! | CAATGTGTTGACTCCTGTCC+TGG | - | tig0027224:18427-18446 | Msa1433050:intron | 50.0% |
| ATCTGCTGTTGAACCAGGAC+AGG | + | tig0027224:18443-18462 | None:intergenic | 50.0% | |
| CTAGCATCTGCTGTTGAACC+AGG | + | tig0027224:18448-18467 | None:intergenic | 50.0% | |
| CAATTCCTGCCATCCAAAGG+GGG | + | tig0027224:18527-18546 | None:intergenic | 50.0% | |
| GGAAACGGAGTCACATGTCT+GGG | + | tig0027224:19141-19160 | None:intergenic | 50.0% | |
| ! | CTGGCTGGCTAGTAACAAGA+TGG | + | tig0027224:19415-19434 | None:intergenic | 50.0% |
| GCTTAACTGGTTGAGGCTTC+AGG | + | tig0027224:19765-19784 | None:intergenic | 50.0% | |
| TGGATTTGTCGGAACCGCCA+TGG | + | tig0027224:13731-13750 | None:intergenic | 55.0% | |
| CTTGCCTTTGGATTCCGCCT+CGG | - | tig0027224:14087-14106 | Msa1433050:intron | 55.0% | |
| TTGACCGAGGCGGAATCCAA+AGG | + | tig0027224:14094-14113 | None:intergenic | 55.0% | |
| TTGGATTCCGCCTCGGTCAA+CGG | - | tig0027224:14094-14113 | Msa1433050:intron | 55.0% | |
| CTCGGTCAACGGAGTTGCTT+CGG | - | tig0027224:14105-14124 | Msa1433050:intron | 55.0% | |
| TAACCAAGGCTCCTCGGCTA+GGG | + | tig0027224:14135-14154 | None:intergenic | 55.0% | |
| ATAACCAAGGCTCCTCGGCT+AGG | + | tig0027224:14136-14155 | None:intergenic | 55.0% | |
| GAACGTTCTGGTGCTTCGGT+TGG | - | tig0027224:14307-14326 | Msa1433050:intron | 55.0% | |
| ! | TTCTGGTGCTTCGGTTGGTG+AGG | - | tig0027224:14312-14331 | Msa1433050:intron | 55.0% |
| CTGTGATCTAATCCCCCAGG+TGG | - | tig0027224:15130-15149 | Msa1433050:CDS | 55.0% | |
| ! | CTCACCACTTTGAAGGCCCA+TGG | + | tig0027224:17206-17225 | None:intergenic | 55.0% |
| CTTCCACCCATGCTGAAGCT+TGG | - | tig0027224:17513-17532 | Msa1433050:intron | 55.0% | |
| ! | CCACCTAAGAGGCACGAATC+TGG | + | tig0027224:18226-18245 | None:intergenic | 55.0% |
| CCAGATTCGTGCCTCTTAGG+TGG | - | tig0027224:18223-18242 | Msa1433050:intron | 55.0% | |
| !! | ATTCTGAGGCCCCCTTTGGA+TGG | - | tig0027224:18515-18534 | Msa1433050:intron | 55.0% |
| GGGAAACGGAGTCACATGTC+TGG | + | tig0027224:19142-19161 | None:intergenic | 55.0% | |
| AGCAACTCCGTTGACCGAGG+CGG | + | tig0027224:14104-14123 | None:intergenic | 60.0% | |
| CGAAGCAACTCCGTTGACCG+AGG | + | tig0027224:14107-14126 | None:intergenic | 60.0% | |
| CACAGCAGTTCCCGACCTAC+AGG | + | tig0027224:18027-18046 | None:intergenic | 60.0% | |
| !! | TGCGATTCTGAGGCCCCCTT+TGG | - | tig0027224:18511-18530 | Msa1433050:intron | 60.0% |
| GAGCTCGAGCACGAGCACGA+TGG | - | tig0027224:13772-13791 | Msa1433050:exon | 65.0% | |
| GCTTCGGATGACCCTAGCCG+AGG | - | tig0027224:14121-14140 | Msa1433050:intron | 65.0% | |
| TGACCCTAGCCGAGGAGCCT+TGG | - | tig0027224:14129-14148 | Msa1433050:intron | 65.0% | |
| TGAGGCCCCCTTTGGATGGC+AGG | - | tig0027224:18519-18538 | Msa1433050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027224 | gene | 13654 | 19820 | 13654 | ID=Msa1433050;Name=Msa1433050 |
| tig0027224 | mRNA | 13654 | 19820 | 13654 | ID=Msa1433050-mRNA-1;Parent=Msa1433050;Name=Msa1433050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=76|0.77|0.9|1|1|1|10|135|483 |
| tig0027224 | exon | 13654 | 13926 | 13654 | ID=Msa1433050-mRNA-1:exon:8467;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 14997 | 15247 | 14997 | ID=Msa1433050-mRNA-1:exon:8466;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 15359 | 15443 | 15359 | ID=Msa1433050-mRNA-1:exon:8465;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 15569 | 15704 | 15569 | ID=Msa1433050-mRNA-1:exon:8464;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 15864 | 16018 | 15864 | ID=Msa1433050-mRNA-1:exon:8463;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 16153 | 16279 | 16153 | ID=Msa1433050-mRNA-1:exon:8462;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 17980 | 18119 | 17980 | ID=Msa1433050-mRNA-1:exon:8461;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 18260 | 18325 | 18260 | ID=Msa1433050-mRNA-1:exon:8460;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 19138 | 19393 | 19138 | ID=Msa1433050-mRNA-1:exon:8459;Parent=Msa1433050-mRNA-1 |
| tig0027224 | exon | 19647 | 19820 | 19647 | ID=Msa1433050-mRNA-1:exon:8458;Parent=Msa1433050-mRNA-1 |
| tig0027224 | five_prime_UTR | 19745 | 19820 | 19745 | ID=Msa1433050-mRNA-1:five_prime_utr;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 19647 | 19744 | 19647 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 19138 | 19393 | 19138 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 18260 | 18325 | 18260 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 17980 | 18119 | 17980 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 16153 | 16279 | 16153 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 15864 | 16018 | 15864 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 15569 | 15704 | 15569 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 15359 | 15443 | 15359 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 14997 | 15247 | 14997 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | CDS | 13789 | 13926 | 13789 | ID=Msa1433050-mRNA-1:cds;Parent=Msa1433050-mRNA-1 |
| tig0027224 | three_prime_UTR | 13654 | 13788 | 13654 | ID=Msa1433050-mRNA-1:three_prime_utr;Parent=Msa1433050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
