Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218490 | XP_013464882.1 | 88.952 | 525 | 35 | 2 | 1 | 503 | 1 | 524 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218490 | A0A072VAY0 | 88.952 | 525 | 35 | 2 | 1 | 503 | 1 | 524 | 0.0 | 889 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0218490 | Msa0297330 | 0.840405 | 8.867990e-58 | -8.615850e-47 |
| Msa0218490 | Msa0548280 | -0.805974 | 1.030076e-49 | -8.615850e-47 |
| Msa0218490 | Msa1433050 | 0.806548 | 7.796090e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218490 | MtrunA17_Chr2g0320661 | 88.952 | 525 | 35 | 2 | 1 | 503 | 1 | 524 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0218490 | AT5G22820.2 | 46.679 | 527 | 235 | 10 | 12 | 503 | 14 | 529 | 7.81e-134 | 398 |
| Msa0218490 | AT5G22820.3 | 46.679 | 527 | 235 | 10 | 12 | 503 | 14 | 529 | 7.81e-134 | 398 |
| Msa0218490 | AT5G22820.1 | 48.913 | 460 | 201 | 7 | 12 | 446 | 14 | 464 | 3.30e-123 | 369 |
Find 113 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATTATGTCAAATATTA+TGG | 0.210799 | 2_1:+65664230 | Msa0218490:CDS |
| GAGATTAGTATAGGAATTAT+TGG | 0.222571 | 2_1:+65662830 | Msa0218490:CDS |
| TGTGGATCATGGTACCTTTC+AGG | 0.233741 | 2_1:-65664625 | None:intergenic |
| CTATTCTCGTAGCTTAAAAT+TGG | 0.240580 | 2_1:+65661138 | Msa0218490:five_prime_UTR |
| TAAGAGTACATCTGAAAATA+TGG | 0.284963 | 2_1:+65661686 | Msa0218490:CDS |
| TAACTCTTTGACAGCTTAAC+TGG | 0.287033 | 2_1:-65666810 | None:intergenic |
| CTTCCAGATTCGTGCCTCTT+AGG | 0.294579 | 2_1:+65665242 | Msa0218490:intron |
| GCAAGGAGAATGTCAGGATT+TGG | 0.296219 | 2_1:+65661740 | Msa0218490:CDS |
| GCTTAACTGGTTGAGGCTTC+AGG | 0.307244 | 2_1:-65666797 | None:intergenic |
| TGCGGTACCTCAGCTTTATC+TGG | 0.309287 | 2_1:-65664913 | None:intergenic |
| AAGGAGGATGCTGAGAATAA+TGG | 0.324222 | 2_1:+65666625 | Msa0218490:CDS |
| ATATTTACCATGTGATATTT+CGG | 0.330665 | 2_1:-65665123 | None:intergenic |
| TTTGATTCAGTGGAACTTCA+TGG | 0.360064 | 2_1:-65662865 | None:intergenic |
| CAGTTGTCCAGACCAATCTT+TGG | 0.361160 | 2_1:+65666746 | Msa0218490:three_prime_UTR |
| GATAAGGAAGCTCTTGCCTT+TGG | 0.380614 | 2_1:+65661542 | Msa0218490:CDS |
| AAGTTTATTCCACCTTGTTT+CGG | 0.383635 | 2_1:+65665379 | Msa0218490:CDS |
| AGGAGGATGCTGAGAATAAT+GGG | 0.389583 | 2_1:+65666626 | Msa0218490:CDS |
| ACCCATGCTGAAGCTTGGTT+TGG | 0.392183 | 2_1:+65664540 | Msa0218490:CDS |
| TTAATTCTTCGTGCTATTGA+AGG | 0.395736 | 2_1:+65664808 | Msa0218490:CDS |
| TCTTCTTCTTCTTCAATGGA+TGG | 0.396399 | 2_1:-65661208 | None:intergenic |
| CTTCCACCCATGCTGAAGCT+TGG | 0.397856 | 2_1:+65664535 | Msa0218490:CDS |
| CTCGGTCAACGGAGTTGCTT+CGG | 0.403237 | 2_1:+65661572 | Msa0218490:CDS |
| CAAGGAGAATGTCAGGATTT+GGG | 0.405190 | 2_1:+65661741 | Msa0218490:CDS |
| CACCTTGTTTCGGTTCTTGT+CGG | 0.406866 | 2_1:+65665389 | Msa0218490:CDS |
| AGATTAGTATAGGAATTATT+GGG | 0.409903 | 2_1:+65662831 | Msa0218490:CDS |
| AGTTATAGATGAACATTCTC+AGG | 0.417677 | 2_1:+65664837 | Msa0218490:CDS |
| TAATAGACTCACCACTTTGA+AGG | 0.430303 | 2_1:-65664180 | None:intergenic |
| GGTGATGGAATTGAACGTTC+TGG | 0.436756 | 2_1:+65661762 | Msa0218490:CDS |
| CATAATAAAGTAATTCTACT+TGG | 0.440478 | 2_1:-65666713 | None:intergenic |
| AGAAAGTCAGCAGAAAGCTT+TGG | 0.443296 | 2_1:+65664504 | Msa0218490:CDS |
| TCTTCAATGGATGGATTTGT+CGG | 0.444494 | 2_1:-65661199 | None:intergenic |
| TTCTCGTAGCTTAAAATTGG+AGG | 0.449038 | 2_1:+65661141 | Msa0218490:five_prime_UTR |
| AAAGTGGTGAGTCTATTAGA+TGG | 0.450250 | 2_1:+65664185 | Msa0218490:CDS |
| CATGTCAAACCTCCAAAGAT+TGG | 0.455428 | 2_1:-65666758 | None:intergenic |
| GTTATATAATCTCCTTGATA+AGG | 0.458047 | 2_1:+65661526 | Msa0218490:CDS |
| TATTTGACATAATATATGTT+CGG | 0.460536 | 2_1:-65664224 | None:intergenic |
| CAATGTGTTGACTCCTGTCC+TGG | 0.467526 | 2_1:+65665449 | Msa0218490:CDS |
| CTTGCCTTTGGATTCCGCCT+CGG | 0.471928 | 2_1:+65661554 | Msa0218490:CDS |
| TTGGATTCCGCCTCGGTCAA+CGG | 0.472032 | 2_1:+65661561 | Msa0218490:CDS |
| AATTGAACGTTCTGGTGCTT+CGG | 0.475047 | 2_1:+65661770 | Msa0218490:CDS |
| TCTCATGCAAGGAGAATGTC+AGG | 0.475462 | 2_1:+65661734 | Msa0218490:CDS |
| TAACCAGCATTGTGAATCAA+TGG | 0.475866 | 2_1:+65666593 | Msa0218490:CDS |
| ACCTCGTGTGATGGAGGAAA+AGG | 0.480383 | 2_1:-65661274 | None:intergenic |
| CTAGCATCTGCTGTTGAACC+AGG | 0.481137 | 2_1:-65665467 | None:intergenic |
| GTCGACACTATTTGATTCAG+TGG | 0.487545 | 2_1:-65662875 | None:intergenic |
| TTGGTTATAGATAATAAAGA+AGG | 0.492848 | 2_1:+65661615 | Msa0218490:CDS |
| TTTGACAGCTTAACTGGTTG+AGG | 0.494793 | 2_1:-65666804 | None:intergenic |
| TGACCCTAGCCGAGGAGCCT+TGG | 0.498070 | 2_1:+65661596 | Msa0218490:CDS |
| ATAACCAAGGCTCCTCGGCT+AGG | 0.501362 | 2_1:-65661600 | None:intergenic |
| ATCTGCTGTTGAACCAGGAC+AGG | 0.502207 | 2_1:-65665462 | None:intergenic |
| GAATGTCAGGATTTGGGTGA+TGG | 0.503091 | 2_1:+65661747 | Msa0218490:CDS |
| AATCAAATAGTGTCGACAAA+AGG | 0.503284 | 2_1:+65662881 | Msa0218490:CDS |
| ATGCTACAGGAGATTAGTAT+AGG | 0.504550 | 2_1:+65662821 | Msa0218490:intron |
| TTCTTTATTATCTATAACCA+AGG | 0.505295 | 2_1:-65661613 | None:intergenic |
| AGGCAAGAGCTTCCTTATCA+AGG | 0.509791 | 2_1:-65661538 | None:intergenic |
| TGGAAGCAAGAAATGCAGTC+TGG | 0.510958 | 2_1:+65665303 | Msa0218490:CDS |
| TTACCTTCTCTAAAAGCTGA+AGG | 0.511983 | 2_1:-65664273 | None:intergenic |
| CAAACCTCCAAAGATTGGTC+TGG | 0.513361 | 2_1:-65666753 | None:intergenic |
| GACAGGAGTCAACACATTGT+TGG | 0.513955 | 2_1:-65665445 | None:intergenic |
| GGATTTGTCGGAACCGCCAT+GGG | 0.517514 | 2_1:-65661187 | None:intergenic |
| GAATCAATGGATTGCTGTAA+AGG | 0.518691 | 2_1:+65666606 | Msa0218490:CDS |
| TAACCAAGGCTCCTCGGCTA+GGG | 0.521780 | 2_1:-65661599 | None:intergenic |
| TCCAAATCATCCGAAGCAAA+AGG | 0.522029 | 2_1:-65665284 | None:intergenic |
| TTTGAATCTTCTCTCATGCA+AGG | 0.526719 | 2_1:+65661723 | Msa0218490:CDS |
| TTGTCCAGACCAATCTTTGG+AGG | 0.536546 | 2_1:+65666749 | Msa0218490:three_prime_UTR |
| AATCCATTGATTCACAATGC+TGG | 0.539426 | 2_1:-65666596 | None:intergenic |
| TATCAATCAGACCACCTAAG+AGG | 0.544952 | 2_1:-65665256 | None:intergenic |
| GAACGTTCTGGTGCTTCGGT+TGG | 0.550806 | 2_1:+65661774 | Msa0218490:CDS |
| TGGATTTGTCGGAACCGCCA+TGG | 0.553089 | 2_1:-65661188 | None:intergenic |
| TGCCAAACCAAGCTTCAGCA+TGG | 0.553733 | 2_1:-65664542 | None:intergenic |
| TCTCGTAGCTTAAAATTGGA+GGG | 0.555905 | 2_1:+65661142 | Msa0218490:five_prime_UTR |
| TATCTATAACCAAGGCTCCT+CGG | 0.556855 | 2_1:-65661605 | None:intergenic |
| TCGTTACAAATTGATGCAGA+TGG | 0.558666 | 2_1:-65661645 | None:intergenic |
| AAACCAAGCTTCAGCATGGG+TGG | 0.563385 | 2_1:-65664538 | None:intergenic |
| TTCTGGTGCTTCGGTTGGTG+AGG | 0.569662 | 2_1:+65661779 | Msa0218490:CDS |
| AAGTGGTGAGTCTATTAGAT+GGG | 0.573874 | 2_1:+65664186 | Msa0218490:CDS |
| TTGCATGAGAGAAGATTCAA+AGG | 0.576865 | 2_1:-65661721 | None:intergenic |
| CCAGATTCGTGCCTCTTAGG+TGG | 0.577487 | 2_1:+65665245 | Msa0218490:intron |
| GAGAACAGATTGTTAACCGT+GGG | 0.580139 | 2_1:+65664157 | Msa0218490:intron |
| GTGATGAAAGAATGCCTGAA+AGG | 0.583242 | 2_1:+65664611 | Msa0218490:CDS |
| AGGACTGATTGAGATAATTG+TGG | 0.585676 | 2_1:+65662901 | Msa0218490:CDS |
| CTCACCACTTTGAAGGCCCA+CGG | 0.587297 | 2_1:-65664173 | None:intergenic |
| TGGTTATAGATAATAAAGAA+GGG | 0.593998 | 2_1:+65661616 | Msa0218490:CDS |
| CATGTTTCACATAGGCATTG+AGG | 0.594745 | 2_1:-65662944 | None:intergenic |
| GTGGAACTTCATGGCAAGCA+AGG | 0.601090 | 2_1:-65662856 | None:intergenic |
| TGAGTCTATTAGATGGGCTG+AGG | 0.601705 | 2_1:+65664192 | Msa0218490:CDS |
| TTGACCGAGGCGGAATCCAA+AGG | 0.602244 | 2_1:-65661558 | None:intergenic |
| ATCAAGGAGATTATATAACT+AGG | 0.603135 | 2_1:-65661522 | None:intergenic |
| GAGAATAATGGGAATGCTGA+AGG | 0.603883 | 2_1:+65666637 | Msa0218490:CDS |
| GCCAAACCAAGCTTCAGCAT+GGG | 0.603907 | 2_1:-65664541 | None:intergenic |
| AATCGAAACGATTCCCATGG+CGG | 0.627072 | 2_1:+65661174 | Msa0218490:exon |
| CATGTGATATTTCGGAAGCA+CGG | 0.628378 | 2_1:-65665115 | None:intergenic |
| CAAAATCGAAACGATTCCCA+TGG | 0.631498 | 2_1:+65661171 | Msa0218490:exon |
| CATACCGACATGTTTCACAT+AGG | 0.632373 | 2_1:-65662952 | None:intergenic |
| TTCCGACAAGAACCGAAACA+AGG | 0.636386 | 2_1:-65665391 | None:intergenic |
| TAGACTTACAGTAACACGCT+CGG | 0.637773 | 2_1:-65662676 | None:intergenic |
| ATGATGATAACCTCGTGTGA+TGG | 0.641969 | 2_1:-65661283 | None:intergenic |
| GGTTATAGATAATAAAGAAG+GGG | 0.648327 | 2_1:+65661617 | Msa0218490:CDS |
| GGAGGAAAAGGATGATGTGT+GGG | 0.649014 | 2_1:-65661262 | None:intergenic |
| CGTGCTTCCGAAATATCACA+TGG | 0.652038 | 2_1:+65665116 | Msa0218490:CDS |
| TGGAGGAAAAGGATGATGTG+TGG | 0.652696 | 2_1:-65661263 | None:intergenic |
| CGAAGCAACTCCGTTGACCG+AGG | 0.657317 | 2_1:-65661571 | None:intergenic |
| AATGCCTATGTGAAACATGT+CGG | 0.660409 | 2_1:+65662948 | Msa0218490:CDS |
| TCAATGGATTGCTGTAAAGG+AGG | 0.666699 | 2_1:+65666609 | Msa0218490:CDS |
| ATGATAACCTCGTGTGATGG+AGG | 0.671070 | 2_1:-65661280 | None:intergenic |
| TGAGAACAGATTGTTAACCG+TGG | 0.671208 | 2_1:+65664156 | Msa0218490:intron |
| AGCAACTCCGTTGACCGAGG+CGG | 0.671827 | 2_1:-65661568 | None:intergenic |
| GCTTCGGATGACCCTAGCCG+AGG | 0.672522 | 2_1:+65661588 | Msa0218490:CDS |
| AATATTTGCAATAAGAACTG+CGG | 0.674411 | 2_1:-65665075 | None:intergenic |
| CGACAAGAACCGAAACAAGG+TGG | 0.675348 | 2_1:-65665388 | None:intergenic |
| CAAGTTTCCAGATAAAGCTG+AGG | 0.689931 | 2_1:+65664906 | Msa0218490:CDS |
| TTAACCGTGGGCCTTCAAAG+TGG | 0.696713 | 2_1:+65664169 | Msa0218490:CDS |
| GAGCTCGAGCACGAGCACGA+TGG | 0.728685 | 2_1:+65661238 | Msa0218490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATAAAATAATATTGAAA+AGG | - | chr2_1:65663915-65663934 | None:intergenic | 10.0% |
| !! | ATATATTATGTCAAATATTA+TGG | + | chr2_1:65664230-65664249 | Msa0218490:CDS | 10.0% |
| !!! | ATGATAAAAATGATTTTGAT+TGG | - | chr2_1:65662334-65662353 | None:intergenic | 15.0% |
| !! | TAAAACAAAAACAAAAAACA+GGG | - | chr2_1:65663071-65663090 | None:intergenic | 15.0% |
| !! | ATAAAACAAAAACAAAAAAC+AGG | - | chr2_1:65663072-65663091 | None:intergenic | 15.0% |
| !!! | CTATTATACATTATTTTTGT+TGG | + | chr2_1:65663101-65663120 | Msa0218490:intron | 15.0% |
| !!! | ACACATTTTTTAATATGAAA+AGG | - | chr2_1:65663163-65663182 | None:intergenic | 15.0% |
| !! | ATAAATAATTCAAAAGGAAA+TGG | - | chr2_1:65663227-65663246 | None:intergenic | 15.0% |
| !! | AAGGAAATAAATAATTCAAA+AGG | - | chr2_1:65663233-65663252 | None:intergenic | 15.0% |
| !!! | AATTACATAATAGACATTTT+AGG | - | chr2_1:65663500-65663519 | None:intergenic | 15.0% |
| !! | TTGAAATTGTATAATTTCAA+AGG | + | chr2_1:65663733-65663752 | Msa0218490:intron | 15.0% |
| !! | TGAAATTGTATAATTTCAAA+GGG | + | chr2_1:65663734-65663753 | Msa0218490:intron | 15.0% |
| !! | TATTTGACATAATATATGTT+CGG | - | chr2_1:65664227-65664246 | None:intergenic | 15.0% |
| !! | AAATAAAAAAACAAGCAAAA+TGG | - | chr2_1:65664402-65664421 | None:intergenic | 15.0% |
| !! | GATACATAATTTAATAAGTT+TGG | + | chr2_1:65665801-65665820 | Msa0218490:intron | 15.0% |
| !! | AAAAAAAATCCATATATACA+AGG | - | chr2_1:65665960-65665979 | None:intergenic | 15.0% |
| !! | AAGTAGAATTTGTAATTAAG+CGG | - | chr2_1:65661314-65661333 | None:intergenic | 20.0% |
| !! | TATAACACTATTGCATTATT+TGG | + | chr2_1:65661408-65661427 | Msa0218490:intron | 20.0% |
| !! | TTCTTTATTATCTATAACCA+AGG | - | chr2_1:65661616-65661635 | None:intergenic | 20.0% |
| !! | TTGGTTATAGATAATAAAGA+AGG | + | chr2_1:65661615-65661634 | Msa0218490:CDS | 20.0% |
| !! | TGGTTATAGATAATAAAGAA+GGG | + | chr2_1:65661616-65661635 | Msa0218490:CDS | 20.0% |
| !! | TTAATTACACCATCAAATTT+CGG | + | chr2_1:65662161-65662180 | Msa0218490:intron | 20.0% |
| !!! | TCATTTTTATAGCAATATCA+TGG | + | chr2_1:65662512-65662531 | Msa0218490:intron | 20.0% |
| !! | TTCAGTTTATACAATCAAAA+CGG | - | chr2_1:65662569-65662588 | None:intergenic | 20.0% |
| !! | TTGTATAAACTGAAATTAGA+TGG | + | chr2_1:65662575-65662594 | Msa0218490:intron | 20.0% |
| !! | TGTGAAACTAAAATATTATC+AGG | + | chr2_1:65662750-65662769 | Msa0218490:intron | 20.0% |
| !! | AGATTAGTATAGGAATTATT+GGG | + | chr2_1:65662831-65662850 | Msa0218490:CDS | 20.0% |
| !! | AAATGTCTATTATGTAATTC+TGG | + | chr2_1:65663501-65663520 | Msa0218490:intron | 20.0% |
| !!! | ATTTCTTTTTTGTATATGTC+TGG | + | chr2_1:65663708-65663727 | Msa0218490:intron | 20.0% |
| !!! | TTTTATTTTTAACAGAGTGT+AGG | + | chr2_1:65664463-65664482 | Msa0218490:intron | 20.0% |
| !!! | TTTATTTTTAACAGAGTGTA+GGG | + | chr2_1:65664464-65664483 | Msa0218490:intron | 20.0% |
| !! | AATTGGTATTAGAAGATAAT+AGG | - | chr2_1:65664685-65664704 | None:intergenic | 20.0% |
| !! | ACTGAATATCTTAAAATTTC+AGG | + | chr2_1:65664770-65664789 | Msa0218490:intron | 20.0% |
| !! | ATATTTACCATGTGATATTT+CGG | - | chr2_1:65665126-65665145 | None:intergenic | 20.0% |
| !!! | AAAAGATTTTACACATGATA+AGG | + | chr2_1:65666036-65666055 | Msa0218490:intron | 20.0% |
| !! | TTGACAATAATTAAATGAAG+CGG | - | chr2_1:65666309-65666328 | None:intergenic | 20.0% |
| !! | CATTTAATTATTGTCAATGT+TGG | + | chr2_1:65666312-65666331 | Msa0218490:intron | 20.0% |
| !! | CTAATGATCTATATGTATTT+AGG | + | chr2_1:65666380-65666399 | Msa0218490:intron | 20.0% |
| !! | CATAATAAAGTAATTCTACT+TGG | - | chr2_1:65666716-65666735 | None:intergenic | 20.0% |
| !! | AAAGATTAATGATTAGTTGC+AGG | - | chr2_1:65661386-65661405 | None:intergenic | 25.0% |
| ! | ATCAAGGAGATTATATAACT+AGG | - | chr2_1:65661525-65661544 | None:intergenic | 25.0% |
| ! | GTTATATAATCTCCTTGATA+AGG | + | chr2_1:65661526-65661545 | Msa0218490:CDS | 25.0% |
| ! | GGTTATAGATAATAAAGAAG+GGG | + | chr2_1:65661617-65661636 | Msa0218490:CDS | 25.0% |
| !! | TAAGAGTACATCTGAAAATA+TGG | + | chr2_1:65661686-65661705 | Msa0218490:CDS | 25.0% |
| !! | AAGAATATGGTTGTATTTTG+TGG | + | chr2_1:65661811-65661830 | Msa0218490:intron | 25.0% |
| !! | AGAATATGGTTGTATTTTGT+GGG | + | chr2_1:65661812-65661831 | Msa0218490:intron | 25.0% |
| !! | GATATTTGTGGAGATATTTT+AGG | + | chr2_1:65661959-65661978 | Msa0218490:intron | 25.0% |
| ! | TAGGAACTAACTTAAGAAAA+CGG | + | chr2_1:65661978-65661997 | Msa0218490:intron | 25.0% |
| ! | CAAAAGTGAGATTAATTTCT+AGG | - | chr2_1:65662065-65662084 | None:intergenic | 25.0% |
| !! | GGTTATAGCATTTTGTATTT+GGG | - | chr2_1:65662364-65662383 | None:intergenic | 25.0% |
| !! | AGGTTATAGCATTTTGTATT+TGG | - | chr2_1:65662365-65662384 | None:intergenic | 25.0% |
| ! | AAATACAAAATGCTATAACC+TGG | + | chr2_1:65662364-65662383 | Msa0218490:intron | 25.0% |
| ! | ATGATTGTTTGAATGTATTG+TGG | + | chr2_1:65662439-65662458 | Msa0218490:intron | 25.0% |
| ! | TAAGATATAAATACGTACCA+TGG | + | chr2_1:65662702-65662721 | Msa0218490:intron | 25.0% |
| ! | TTTGTATTAATACATGCTAC+AGG | + | chr2_1:65662808-65662827 | Msa0218490:intron | 25.0% |
| ! | GAGATTAGTATAGGAATTAT+TGG | + | chr2_1:65662830-65662849 | Msa0218490:CDS | 25.0% |
| !!! | TCTCTCTTTCATTTTTGTTA+AGG | + | chr2_1:65663006-65663025 | Msa0218490:intron | 25.0% |
| ! | AAAAAACAGGGATAACAATA+CGG | - | chr2_1:65663059-65663078 | None:intergenic | 25.0% |
| ! | TAATTTCTCTCTCTTGATTT+CGG | + | chr2_1:65663633-65663652 | Msa0218490:intron | 25.0% |
| ! | TTCATCAAGAAAGAAGATAA+TGG | - | chr2_1:65663963-65663982 | None:intergenic | 25.0% |
| ! | CTAATTTCATTGATGCAAAA+TGG | - | chr2_1:65664656-65664675 | None:intergenic | 25.0% |
| ! | GTCAATAATGTTGTCATAAT+TGG | - | chr2_1:65664702-65664721 | None:intergenic | 25.0% |
| ! | AAGTGTTAACTACAATAATG+CGG | - | chr2_1:65664934-65664953 | None:intergenic | 25.0% |
| ! | GACATGAAATGAAAATGATT+TGG | + | chr2_1:65664989-65665008 | Msa0218490:intron | 25.0% |
| ! | AATATTTGCAATAAGAACTG+CGG | - | chr2_1:65665078-65665097 | None:intergenic | 25.0% |
| !! | TGATATATTTCCTTTTGCTT+CGG | + | chr2_1:65665274-65665293 | Msa0218490:CDS | 25.0% |
| ! | AAGTGCAAATAACTAAATGA+AGG | - | chr2_1:65665507-65665526 | None:intergenic | 25.0% |
| ! | CAGAAATCCTCATAATATAA+TGG | + | chr2_1:65666070-65666089 | Msa0218490:intron | 25.0% |
| ! | GGACTTATAAATGTAATGAA+TGG | - | chr2_1:65666288-65666307 | None:intergenic | 25.0% |
| !! | TTATTGTCAATGTTGGTTAA+TGG | + | chr2_1:65666319-65666338 | Msa0218490:intron | 25.0% |
| ! | AACCTAAATAACAATACATG+TGG | - | chr2_1:65666496-65666515 | None:intergenic | 25.0% |
| ! | ACTATTATTCCAAAGGTAAA+GGG | - | chr2_1:65666564-65666583 | None:intergenic | 25.0% |
| ! | AACTATTATTCCAAAGGTAA+AGG | - | chr2_1:65666565-65666584 | None:intergenic | 25.0% |
| ! | GATAGATGTAAAAAAGTTGT+TGG | + | chr2_1:65666672-65666691 | Msa0218490:CDS | 25.0% |
| CTATTCTCGTAGCTTAAAAT+TGG | + | chr2_1:65661138-65661157 | Msa0218490:five_prime_UTR | 30.0% | |
| TTCTTCTTCTTCTTCTTCAA+TGG | - | chr2_1:65661215-65661234 | None:intergenic | 30.0% | |
| ! | GCATGGATTGAAAATTGAAA+TGG | - | chr2_1:65661351-65661370 | None:intergenic | 30.0% |
| ! | TGAGTTCTTTTGTATGTTCA+TGG | + | chr2_1:65662091-65662110 | Msa0218490:intron | 30.0% |
| TACTCAAAACCGAAATTTGA+TGG | - | chr2_1:65662173-65662192 | None:intergenic | 30.0% | |
| ! | TTCAGACTGCATTCTTTTTA+TGG | + | chr2_1:65662725-65662744 | Msa0218490:intron | 30.0% |
| !! | AATCAAATAGTGTCGACAAA+AGG | + | chr2_1:65662881-65662900 | Msa0218490:CDS | 30.0% |
| GTCAAAACATTTGATATAGC+AGG | - | chr2_1:65663135-65663154 | None:intergenic | 30.0% | |
| CAGAATAGATAAGGCATAAT+TGG | - | chr2_1:65663203-65663222 | None:intergenic | 30.0% | |
| CTTTGAACTCTTTACTATTG+AGG | + | chr2_1:65663318-65663337 | Msa0218490:intron | 30.0% | |
| ! | CATAGAAAGCTGATATTTTG+TGG | + | chr2_1:65663668-65663687 | Msa0218490:intron | 30.0% |
| !!! | TTGTTATTTTAGCCACCTTT+TGG | + | chr2_1:65663791-65663810 | Msa0218490:intron | 30.0% |
| ! | AGATAATGGTACAAAGAAAG+TGG | - | chr2_1:65663949-65663968 | None:intergenic | 30.0% |
| ATATACCAGCCTGAATATAT+AGG | + | chr2_1:65664015-65664034 | Msa0218490:intron | 30.0% | |
| AGCCTGAATATATAGGAATA+GGG | + | chr2_1:65664022-65664041 | Msa0218490:intron | 30.0% | |
| TTTCTTGTGCAATATTCCAT+AGG | - | chr2_1:65664353-65664372 | None:intergenic | 30.0% | |
| ATATTGCACAAGAAACAATC+TGG | + | chr2_1:65664358-65664377 | Msa0218490:intron | 30.0% | |
| TATTGCACAAGAAACAATCT+GGG | + | chr2_1:65664359-65664378 | Msa0218490:intron | 30.0% | |
| TTTCATTGATGCAAAATGGA+GGG | - | chr2_1:65664652-65664671 | None:intergenic | 30.0% | |
| ATTTCATTGATGCAAAATGG+AGG | - | chr2_1:65664653-65664672 | None:intergenic | 30.0% | |
| TAACTATTCATCAATCAGTC+CGG | + | chr2_1:65664731-65664750 | Msa0218490:intron | 30.0% | |
| ! | TTAATTCTTCGTGCTATTGA+AGG | + | chr2_1:65664808-65664827 | Msa0218490:CDS | 30.0% |
| AGTTATAGATGAACATTCTC+AGG | + | chr2_1:65664837-65664856 | Msa0218490:CDS | 30.0% | |
| ! | TTTTCATCTTGTATGTGACA+TGG | + | chr2_1:65664882-65664901 | Msa0218490:CDS | 30.0% |
| AGCGCATATTAAATAACAAG+AGG | - | chr2_1:65664958-65664977 | None:intergenic | 30.0% | |
| TTTGGACAACTGAAAAACAA+TGG | + | chr2_1:65665007-65665026 | Msa0218490:intron | 30.0% | |
| ACTGAAAAACAATGGTGAAT+TGG | + | chr2_1:65665015-65665034 | Msa0218490:intron | 30.0% | |
| AAATATCGCATTGAAGTCTA+TGG | - | chr2_1:65665166-65665185 | None:intergenic | 30.0% | |
| ! | AAGTTTATTCCACCTTGTTT+CGG | + | chr2_1:65665379-65665398 | Msa0218490:CDS | 30.0% |
| GAAATTTGAATCACGTTTCT+TGG | + | chr2_1:65665568-65665587 | Msa0218490:intron | 30.0% | |
| TAGTGCAACAAGAATTAAGA+TGG | - | chr2_1:65665667-65665686 | None:intergenic | 30.0% | |
| ! | CTTGTTGCACTAATTTCTTT+TGG | + | chr2_1:65665675-65665694 | Msa0218490:intron | 30.0% |
| AGAAAAATAAACCCGATATG+AGG | + | chr2_1:65665840-65665859 | Msa0218490:intron | 30.0% | |
| GTAACAGCCATTATATTATG+AGG | - | chr2_1:65666080-65666099 | None:intergenic | 30.0% | |
| CATCACTATAATTATGCTTG+TGG | - | chr2_1:65666135-65666154 | None:intergenic | 30.0% | |
| CACAAGCATAATTATAGTGA+TGG | + | chr2_1:65666133-65666152 | Msa0218490:intron | 30.0% | |
| GCATAATTATAGTGATGGTT+AGG | + | chr2_1:65666138-65666157 | Msa0218490:intron | 30.0% | |
| TAACAAGATGGAAGTCAAAA+AGG | - | chr2_1:65666437-65666456 | None:intergenic | 30.0% | |
| CATTTATAATCAGATGCACT+GGG | - | chr2_1:65666468-65666487 | None:intergenic | 30.0% | |
| TAAATAACAATACATGTGGC+TGG | - | chr2_1:65666492-65666511 | None:intergenic | 30.0% | |
| !! | AGCCACATGTATTGTTATTT+AGG | + | chr2_1:65666491-65666510 | Msa0218490:intron | 30.0% |
| TATTTGTTTCCCTTTACCTT+TGG | + | chr2_1:65666552-65666571 | Msa0218490:intron | 30.0% | |
| CTCATGAACTATTATTCCAA+AGG | - | chr2_1:65666571-65666590 | None:intergenic | 30.0% | |
| TTCTCGTAGCTTAAAATTGG+AGG | + | chr2_1:65661141-65661160 | Msa0218490:five_prime_UTR | 35.0% | |
| TCTCGTAGCTTAAAATTGGA+GGG | + | chr2_1:65661142-65661161 | Msa0218490:five_prime_UTR | 35.0% | |
| ! | TCTTCAATGGATGGATTTGT+CGG | - | chr2_1:65661202-65661221 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCAATGGA+TGG | - | chr2_1:65661211-65661230 | None:intergenic | 35.0% | |
| TCGTTACAAATTGATGCAGA+TGG | - | chr2_1:65661648-65661667 | None:intergenic | 35.0% | |
| TTGCATGAGAGAAGATTCAA+AGG | - | chr2_1:65661724-65661743 | None:intergenic | 35.0% | |
| TTTGAATCTTCTCTCATGCA+AGG | + | chr2_1:65661723-65661742 | Msa0218490:CDS | 35.0% | |
| TACACATGCATCCAACAAAT+TGG | + | chr2_1:65661928-65661947 | Msa0218490:intron | 35.0% | |
| ACACATGCATCCAACAAATT+GGG | + | chr2_1:65661929-65661948 | Msa0218490:intron | 35.0% | |
| ATCTACATAGCCCAATTTGT+TGG | - | chr2_1:65661942-65661961 | None:intergenic | 35.0% | |
| TTGGGCTATGTAGATATTTG+TGG | + | chr2_1:65661947-65661966 | Msa0218490:intron | 35.0% | |
| !! | GCTCTTAAATGTGATTTGCT+TGG | + | chr2_1:65662000-65662019 | Msa0218490:intron | 35.0% |
| ! | GATTAATTTCTAGGCACAGA+CGG | - | chr2_1:65662056-65662075 | None:intergenic | 35.0% |
| !! | GAGTTTCACTCAGTTACTTT+TGG | + | chr2_1:65662241-65662260 | Msa0218490:intron | 35.0% |
| AAAATGCTATAACCTGGTAG+TGG | + | chr2_1:65662370-65662389 | Msa0218490:intron | 35.0% | |
| ACTCGAAGCTTGATTATGAT+GGG | - | chr2_1:65662493-65662512 | None:intergenic | 35.0% | |
| CGTAAAGAAATGAGAGAAAG+TGG | - | chr2_1:65662538-65662557 | None:intergenic | 35.0% | |
| AAGTATTAGATTCTCCACCT+GGG | - | chr2_1:65662622-65662641 | None:intergenic | 35.0% | |
| ATGCTACAGGAGATTAGTAT+AGG | + | chr2_1:65662821-65662840 | Msa0218490:intron | 35.0% | |
| TTTGATTCAGTGGAACTTCA+TGG | - | chr2_1:65662868-65662887 | None:intergenic | 35.0% | |
| AGGACTGATTGAGATAATTG+TGG | + | chr2_1:65662901-65662920 | Msa0218490:CDS | 35.0% | |
| AATGCCTATGTGAAACATGT+CGG | + | chr2_1:65662948-65662967 | Msa0218490:CDS | 35.0% | |
| TACGGAAATAGTAACGAAAC+AGG | - | chr2_1:65663041-65663060 | None:intergenic | 35.0% | |
| GGAAATGGACAGAATAGATA+AGG | - | chr2_1:65663212-65663231 | None:intergenic | 35.0% | |
| GAGTTCAAAGTCTATCATAG+AGG | - | chr2_1:65663308-65663327 | None:intergenic | 35.0% | |
| !! | ACATAAGCTTTGAGCTTAGA+TGG | - | chr2_1:65663403-65663422 | None:intergenic | 35.0% |
| CTAAGCTCAAAGCTTATGTT+TGG | + | chr2_1:65663404-65663423 | Msa0218490:intron | 35.0% | |
| AGAAATTAACGCATATCCGT+AGG | - | chr2_1:65663621-65663640 | None:intergenic | 35.0% | |
| !!! | CTCTAGACTTATTTTGCACA+GGG | + | chr2_1:65663768-65663787 | Msa0218490:intron | 35.0% |
| !!! | GCTCATGATGTTTTTAGAAC+TGG | + | chr2_1:65663820-65663839 | Msa0218490:intron | 35.0% |
| TCTGAGTCATGCAGAAATAT+TGG | + | chr2_1:65663848-65663867 | Msa0218490:intron | 35.0% | |
| TGCTACATGATTCAATTCCT+AGG | + | chr2_1:65663878-65663897 | Msa0218490:intron | 35.0% | |
| AAAAGGCAAAACTAGAACCT+AGG | - | chr2_1:65663898-65663917 | None:intergenic | 35.0% | |
| CTATTCCTATATATTCAGGC+TGG | - | chr2_1:65664023-65664042 | None:intergenic | 35.0% | |
| CAGCCTGAATATATAGGAAT+AGG | + | chr2_1:65664021-65664040 | Msa0218490:intron | 35.0% | |
| GCCTGAATATATAGGAATAG+GGG | + | chr2_1:65664023-65664042 | Msa0218490:intron | 35.0% | |
| TCCCCTATTCCTATATATTC+AGG | - | chr2_1:65664027-65664046 | None:intergenic | 35.0% | |
| TAATAGACTCACCACTTTGA+AGG | - | chr2_1:65664183-65664202 | None:intergenic | 35.0% | |
| AAAGTGGTGAGTCTATTAGA+TGG | + | chr2_1:65664185-65664204 | Msa0218490:CDS | 35.0% | |
| AAGTGGTGAGTCTATTAGAT+GGG | + | chr2_1:65664186-65664205 | Msa0218490:CDS | 35.0% | |
| ! | TTACCTTCTCTAAAAGCTGA+AGG | - | chr2_1:65664276-65664295 | None:intergenic | 35.0% |
| !! | ACTTTGTGAAAAGCATCCTA+TGG | + | chr2_1:65664334-65664353 | Msa0218490:intron | 35.0% |
| TGATTAGTGACTCAGAAACA+AGG | - | chr2_1:65664429-65664448 | None:intergenic | 35.0% | |
| ACTTATTGTTTGCGATTCTG+AGG | + | chr2_1:65665523-65665542 | Msa0218490:intron | 35.0% | |
| GAATCACGTTTCTTGGAATT+AGG | + | chr2_1:65665575-65665594 | Msa0218490:intron | 35.0% | |
| ! | TTTCTTTTGGCCAGAAAAAG+TGG | + | chr2_1:65665688-65665707 | Msa0218490:intron | 35.0% |
| !!! | CTACTACTAACCACTTTTTC+TGG | - | chr2_1:65665701-65665720 | None:intergenic | 35.0% |
| ! | CATGTAAATGATTTTGCGCT+GGG | - | chr2_1:65665898-65665917 | None:intergenic | 35.0% |
| ! | TCATGTAAATGATTTTGCGC+TGG | - | chr2_1:65665899-65665918 | None:intergenic | 35.0% |
| ! | GTCTTACAGCCTTGTATATA+TGG | + | chr2_1:65665948-65665967 | Msa0218490:intron | 35.0% |
| TAACAGCAATACTAGGGAAA+CGG | - | chr2_1:65666188-65666207 | None:intergenic | 35.0% | |
| GGACTATAACAGCAATACTA+GGG | - | chr2_1:65666194-65666213 | None:intergenic | 35.0% | |
| TGGACTATAACAGCAATACT+AGG | - | chr2_1:65666195-65666214 | None:intergenic | 35.0% | |
| ! | TGTTGGTTAATGGTTCCTAA+AGG | + | chr2_1:65666329-65666348 | Msa0218490:intron | 35.0% |
| GTTGGTTAATGGTTCCTAAA+GGG | + | chr2_1:65666330-65666349 | Msa0218490:intron | 35.0% | |
| CCATTTATAATCAGATGCAC+TGG | - | chr2_1:65666469-65666488 | None:intergenic | 35.0% | |
| CCAGTGCATCTGATTATAAA+TGG | + | chr2_1:65666466-65666485 | Msa0218490:intron | 35.0% | |
| TAACCAGCATTGTGAATCAA+TGG | + | chr2_1:65666593-65666612 | Msa0218490:CDS | 35.0% | |
| !! | AATCCATTGATTCACAATGC+TGG | - | chr2_1:65666599-65666618 | None:intergenic | 35.0% |
| !! | GAATCAATGGATTGCTGTAA+AGG | + | chr2_1:65666606-65666625 | Msa0218490:CDS | 35.0% |
| TAACTCTTTGACAGCTTAAC+TGG | - | chr2_1:65666813-65666832 | None:intergenic | 35.0% | |
| CAAAATCGAAACGATTCCCA+TGG | + | chr2_1:65661171-65661190 | Msa0218490:exon | 40.0% | |
| ATGATGATAACCTCGTGTGA+TGG | - | chr2_1:65661286-65661305 | None:intergenic | 40.0% | |
| GCAGGTAATTGAAATGAGCA+TGG | - | chr2_1:65661368-65661387 | None:intergenic | 40.0% | |
| TATCTATAACCAAGGCTCCT+CGG | - | chr2_1:65661608-65661627 | None:intergenic | 40.0% | |
| CAAGGAGAATGTCAGGATTT+GGG | + | chr2_1:65661741-65661760 | Msa0218490:CDS | 40.0% | |
| AATTGAACGTTCTGGTGCTT+CGG | + | chr2_1:65661770-65661789 | Msa0218490:CDS | 40.0% | |
| GAGGATGTATGGGAAGAATA+TGG | + | chr2_1:65661798-65661817 | Msa0218490:intron | 40.0% | |
| TAAAACACATGCGGAACTCA+TGG | + | chr2_1:65661848-65661867 | Msa0218490:intron | 40.0% | |
| !! | TGGTACTGCTCTACTTTTGT+TGG | + | chr2_1:65661868-65661887 | Msa0218490:intron | 40.0% |
| !! | GGTACTGCTCTACTTTTGTT+GGG | + | chr2_1:65661869-65661888 | Msa0218490:intron | 40.0% |
| ! | TCTCCAAAATGTCACTTGTG+TGG | + | chr2_1:65662399-65662418 | Msa0218490:intron | 40.0% |
| ! | CTCCAAAATGTCACTTGTGT+GGG | + | chr2_1:65662400-65662419 | Msa0218490:intron | 40.0% |
| !! | CTTGATTATGATGGGTAGAG+TGG | - | chr2_1:65662485-65662504 | None:intergenic | 40.0% |
| GACTCGAAGCTTGATTATGA+TGG | - | chr2_1:65662494-65662513 | None:intergenic | 40.0% | |
| AGTATTAGATTCTCCACCTG+GGG | - | chr2_1:65662621-65662640 | None:intergenic | 40.0% | |
| CAAGTATTAGATTCTCCACC+TGG | - | chr2_1:65662623-65662642 | None:intergenic | 40.0% | |
| TAGACTTACAGTAACACGCT+CGG | - | chr2_1:65662679-65662698 | None:intergenic | 40.0% | |
| AAAGAATGCAGTCTGAACCA+TGG | - | chr2_1:65662722-65662741 | None:intergenic | 40.0% | |
| GTCGACACTATTTGATTCAG+TGG | - | chr2_1:65662878-65662897 | None:intergenic | 40.0% | |
| ! | CATGTTTCACATAGGCATTG+AGG | - | chr2_1:65662947-65662966 | None:intergenic | 40.0% |
| CATACCGACATGTTTCACAT+AGG | - | chr2_1:65662955-65662974 | None:intergenic | 40.0% | |
| TCTAACAGGCAAGTTCATCA+AGG | - | chr2_1:65663252-65663271 | None:intergenic | 40.0% | |
| AACTCAGTAACCTCTCTAAC+AGG | - | chr2_1:65663266-65663285 | None:intergenic | 40.0% | |
| AGAGACTTTGTTAGGAGGAT+GGG | - | chr2_1:65663374-65663393 | None:intergenic | 40.0% | |
| TAGAGACTTTGTTAGGAGGA+TGG | - | chr2_1:65663375-65663394 | None:intergenic | 40.0% | |
| !! | GCTTTAGAGACTTTGTTAGG+AGG | - | chr2_1:65663379-65663398 | None:intergenic | 40.0% |
| !! | GGAGCTTTAGAGACTTTGTT+AGG | - | chr2_1:65663382-65663401 | None:intergenic | 40.0% |
| TAATTCTGGTCCATCAACCA+GGG | + | chr2_1:65663515-65663534 | Msa0218490:intron | 40.0% | |
| ATGCAAAACGAGATAAACCC+TGG | - | chr2_1:65663535-65663554 | None:intergenic | 40.0% | |
| AGTAAGCTGTGCAGGATTTA+TGG | + | chr2_1:65663579-65663598 | Msa0218490:intron | 40.0% | |
| CAGGATTTATGGAGGATAGT+AGG | + | chr2_1:65663590-65663609 | Msa0218490:intron | 40.0% | |
| AGGATAGTAGGTTTGTCCTA+CGG | + | chr2_1:65663602-65663621 | Msa0218490:intron | 40.0% | |
| TTTCTCTCTCTTGATTTCGG+AGG | + | chr2_1:65663636-65663655 | Msa0218490:intron | 40.0% | |
| !!! | GCTCTAGACTTATTTTGCAC+AGG | + | chr2_1:65663767-65663786 | Msa0218490:intron | 40.0% |
| ATCATGAGCAAAACGCCAAA+AGG | - | chr2_1:65663809-65663828 | None:intergenic | 40.0% | |
| TGAGAACAGATTGTTAACCG+TGG | + | chr2_1:65664156-65664175 | Msa0218490:intron | 40.0% | |
| GAGAACAGATTGTTAACCGT+GGG | + | chr2_1:65664157-65664176 | Msa0218490:intron | 40.0% | |
| !! | GAACCTTCAGCTTTTAGAGA+AGG | + | chr2_1:65664270-65664289 | Msa0218490:CDS | 40.0% |
| AGAAAGTCAGCAGAAAGCTT+TGG | + | chr2_1:65664504-65664523 | Msa0218490:CDS | 40.0% | |
| GTGATGAAAGAATGCCTGAA+AGG | + | chr2_1:65664611-65664630 | Msa0218490:CDS | 40.0% | |
| AGTTGTCAGATCAATTCCAC+CGG | - | chr2_1:65664753-65664772 | None:intergenic | 40.0% | |
| CAAGTTTCCAGATAAAGCTG+AGG | + | chr2_1:65664906-65664925 | Msa0218490:CDS | 40.0% | |
| GAATTGGTCATATCTCCTGT+AGG | + | chr2_1:65665031-65665050 | Msa0218490:intron | 40.0% | |
| CATGTGATATTTCGGAAGCA+CGG | - | chr2_1:65665118-65665137 | None:intergenic | 40.0% | |
| TATCAATCAGACCACCTAAG+AGG | - | chr2_1:65665259-65665278 | None:intergenic | 40.0% | |
| ! | TCCTTTTGCTTCGGATGATT+TGG | + | chr2_1:65665283-65665302 | Msa0218490:CDS | 40.0% |
| TCCAAATCATCCGAAGCAAA+AGG | - | chr2_1:65665287-65665306 | None:intergenic | 40.0% | |
| TTCAATTCCTGCCATCCAAA+GGG | - | chr2_1:65665551-65665570 | None:intergenic | 40.0% | |
| TTTCAATTCCTGCCATCCAA+AGG | - | chr2_1:65665552-65665571 | None:intergenic | 40.0% | |
| TTCTGCTAACACCTCATATC+GGG | - | chr2_1:65665854-65665873 | None:intergenic | 40.0% | |
| CTTCTGCTAACACCTCATAT+CGG | - | chr2_1:65665855-65665874 | None:intergenic | 40.0% | |
| CACATGATAAGGAACATGTG+TGG | + | chr2_1:65666047-65666066 | Msa0218490:intron | 40.0% | |
| TGGACATTCTCAGTCAAAGA+CGG | - | chr2_1:65666115-65666134 | None:intergenic | 40.0% | |
| AGTGGAAATCAAATGTGCAG+TGG | - | chr2_1:65666215-65666234 | None:intergenic | 40.0% | |
| ACAATCATAGTTGGTTGCAG+TGG | - | chr2_1:65666233-65666252 | None:intergenic | 40.0% | |
| TGCAACCAACTATGATTGTG+TGG | + | chr2_1:65666234-65666253 | Msa0218490:intron | 40.0% | |
| AACAGCCACACAATCATAGT+TGG | - | chr2_1:65666242-65666261 | None:intergenic | 40.0% | |
| CTGCTCAAGAATTTCCCTTT+AGG | - | chr2_1:65666347-65666366 | None:intergenic | 40.0% | |
| TATAATCAGATGCACTGGGA+TGG | - | chr2_1:65666464-65666483 | None:intergenic | 40.0% | |
| !! | TCAATGGATTGCTGTAAAGG+AGG | + | chr2_1:65666609-65666628 | Msa0218490:CDS | 40.0% |
| AAGGAGGATGCTGAGAATAA+TGG | + | chr2_1:65666625-65666644 | Msa0218490:CDS | 40.0% | |
| AGGAGGATGCTGAGAATAAT+GGG | + | chr2_1:65666626-65666645 | Msa0218490:CDS | 40.0% | |
| ! | GAGAATAATGGGAATGCTGA+AGG | + | chr2_1:65666637-65666656 | Msa0218490:CDS | 40.0% |
| CATGTCAAACCTCCAAAGAT+TGG | - | chr2_1:65666761-65666780 | None:intergenic | 40.0% | |
| TTTGACAGCTTAACTGGTTG+AGG | - | chr2_1:65666807-65666826 | None:intergenic | 40.0% | |
| AATCGAAACGATTCCCATGG+CGG | + | chr2_1:65661174-65661193 | Msa0218490:exon | 45.0% | |
| GGAGGAAAAGGATGATGTGT+GGG | - | chr2_1:65661265-65661284 | None:intergenic | 45.0% | |
| TGGAGGAAAAGGATGATGTG+TGG | - | chr2_1:65661266-65661285 | None:intergenic | 45.0% | |
| ATGATAACCTCGTGTGATGG+AGG | - | chr2_1:65661283-65661302 | None:intergenic | 45.0% | |
| AGGCAAGAGCTTCCTTATCA+AGG | - | chr2_1:65661541-65661560 | None:intergenic | 45.0% | |
| GATAAGGAAGCTCTTGCCTT+TGG | + | chr2_1:65661542-65661561 | Msa0218490:CDS | 45.0% | |
| TCTCATGCAAGGAGAATGTC+AGG | + | chr2_1:65661734-65661753 | Msa0218490:CDS | 45.0% | |
| GCAAGGAGAATGTCAGGATT+TGG | + | chr2_1:65661740-65661759 | Msa0218490:CDS | 45.0% | |
| GAATGTCAGGATTTGGGTGA+TGG | + | chr2_1:65661747-65661766 | Msa0218490:CDS | 45.0% | |
| !! | GGTGATGGAATTGAACGTTC+TGG | + | chr2_1:65661762-65661781 | Msa0218490:CDS | 45.0% |
| !! | TTCGGTTGGTGAGGATGTAT+GGG | + | chr2_1:65661788-65661807 | Msa0218490:intron | 45.0% |
| AGCTGCCAGTAAAACACATG+CGG | + | chr2_1:65661839-65661858 | Msa0218490:intron | 45.0% | |
| ! | GAGTTCCGCATGTGTTTTAC+TGG | - | chr2_1:65661847-65661866 | None:intergenic | 45.0% |
| !! | TGCTATAACCTGGTAGTGGT+CGG | + | chr2_1:65662374-65662393 | Msa0218490:intron | 45.0% |
| ! | AGCCCACACAAGTGACATTT+TGG | - | chr2_1:65662405-65662424 | None:intergenic | 45.0% |
| !! | TATGATGGGTAGAGTGGTCA+AGG | - | chr2_1:65662479-65662498 | None:intergenic | 45.0% |
| GTATTAGATTCTCCACCTGG+GGG | - | chr2_1:65662620-65662639 | None:intergenic | 45.0% | |
| GATGAACTTGCCTGTTAGAG+AGG | + | chr2_1:65663253-65663272 | Msa0218490:intron | 45.0% | |
| CTTTGTTAGGAGGATGGGAA+AGG | - | chr2_1:65663369-65663388 | None:intergenic | 45.0% | |
| GTAATTCTGGTCCATCAACC+AGG | + | chr2_1:65663514-65663533 | Msa0218490:intron | 45.0% | |
| ACGAGATAAACCCTGGTTGA+TGG | - | chr2_1:65663528-65663547 | None:intergenic | 45.0% | |
| TTTCACAGAGTAAGCTGTGC+AGG | + | chr2_1:65663571-65663590 | Msa0218490:intron | 45.0% | |
| AAGCTGTGCAGGATTTATGG+AGG | + | chr2_1:65663582-65663601 | Msa0218490:intron | 45.0% | |
| ATGAGCAAAACGCCAAAAGG+TGG | - | chr2_1:65663806-65663825 | None:intergenic | 45.0% | |
| ! | GTGTGTGGGCTCTTCTTTTA+TGG | - | chr2_1:65663993-65664012 | None:intergenic | 45.0% |
| AGGCTGGTATATCTGTGTGT+GGG | - | chr2_1:65664007-65664026 | None:intergenic | 45.0% | |
| TGCGTGTTGTGCTGTAAACT+AGG | + | chr2_1:65664078-65664097 | Msa0218490:intron | 45.0% | |
| !! | TGAGTCTATTAGATGGGCTG+AGG | + | chr2_1:65664192-65664211 | Msa0218490:CDS | 45.0% |
| GCACAAGAAACAATCTGGGA+AGG | + | chr2_1:65664363-65664382 | Msa0218490:intron | 45.0% | |
| TGTGGATCATGGTACCTTTC+AGG | - | chr2_1:65664628-65664647 | None:intergenic | 45.0% | |
| AAATGGAGGGTTGTGGATCA+TGG | - | chr2_1:65664639-65664658 | None:intergenic | 45.0% | |
| TGATGCAAAATGGAGGGTTG+TGG | - | chr2_1:65664646-65664665 | None:intergenic | 45.0% | |
| CTATTCATCAATCAGTCCGG+TGG | + | chr2_1:65664734-65664753 | Msa0218490:intron | 45.0% | |
| TGGTCATATCTCCTGTAGGT+CGG | + | chr2_1:65665035-65665054 | Msa0218490:intron | 45.0% | |
| CGTGCTTCCGAAATATCACA+TGG | + | chr2_1:65665116-65665135 | Msa0218490:CDS | 45.0% | |
| TGGAAGCAAGAAATGCAGTC+TGG | + | chr2_1:65665303-65665322 | Msa0218490:CDS | 45.0% | |
| ! | CACCTTGTTTCGGTTCTTGT+CGG | + | chr2_1:65665389-65665408 | Msa0218490:CDS | 45.0% |
| TTCCGACAAGAACCGAAACA+AGG | - | chr2_1:65665394-65665413 | None:intergenic | 45.0% | |
| GACAGGAGTCAACACATTGT+TGG | - | chr2_1:65665448-65665467 | None:intergenic | 45.0% | |
| TCAATTCCTGCCATCCAAAG+GGG | - | chr2_1:65665550-65665569 | None:intergenic | 45.0% | |
| TGGGATGGCTAGTAACAAGA+TGG | - | chr2_1:65666449-65666468 | None:intergenic | 45.0% | |
| CAGTTGTCCAGACCAATCTT+TGG | + | chr2_1:65666746-65666765 | Msa0218490:three_prime_UTR | 45.0% | |
| TTGTCCAGACCAATCTTTGG+AGG | + | chr2_1:65666749-65666768 | Msa0218490:three_prime_UTR | 45.0% | |
| ! | CAAACCTCCAAAGATTGGTC+TGG | - | chr2_1:65666756-65666775 | None:intergenic | 45.0% |
| ! | TCCTTTTCCTCCATCACACG+AGG | + | chr2_1:65661273-65661292 | Msa0218490:CDS | 50.0% |
| ! | ACCTCGTGTGATGGAGGAAA+AGG | - | chr2_1:65661277-65661296 | None:intergenic | 50.0% |
| !! | CTTCGGTTGGTGAGGATGTA+TGG | + | chr2_1:65661787-65661806 | Msa0218490:intron | 50.0% |
| GTTCTGTGATCTAATCCCCC+AGG | + | chr2_1:65662602-65662621 | Msa0218490:intron | 50.0% | |
| GTGGAACTTCATGGCAAGCA+AGG | - | chr2_1:65662859-65662878 | None:intergenic | 50.0% | |
| CAGGCTGGTATATCTGTGTG+TGG | - | chr2_1:65664008-65664027 | None:intergenic | 50.0% | |
| TTAACCGTGGGCCTTCAAAG+TGG | + | chr2_1:65664169-65664188 | Msa0218490:CDS | 50.0% | |
| AAACCAAGCTTCAGCATGGG+TGG | - | chr2_1:65664541-65664560 | None:intergenic | 50.0% | |
| ACCCATGCTGAAGCTTGGTT+TGG | + | chr2_1:65664540-65664559 | Msa0218490:CDS | 50.0% | |
| GCCAAACCAAGCTTCAGCAT+GGG | - | chr2_1:65664544-65664563 | None:intergenic | 50.0% | |
| TGCCAAACCAAGCTTCAGCA+TGG | - | chr2_1:65664545-65664564 | None:intergenic | 50.0% | |
| ! | TGCGGTACCTCAGCTTTATC+TGG | - | chr2_1:65664916-65664935 | None:intergenic | 50.0% |
| GGTCATATCTCCTGTAGGTC+GGG | + | chr2_1:65665036-65665055 | Msa0218490:intron | 50.0% | |
| ! | CTAAGAGGCACGAATCTGGA+AGG | - | chr2_1:65665244-65665263 | None:intergenic | 50.0% |
| CTTCCAGATTCGTGCCTCTT+AGG | + | chr2_1:65665242-65665261 | Msa0218490:intron | 50.0% | |
| CGACAAGAACCGAAACAAGG+TGG | - | chr2_1:65665391-65665410 | None:intergenic | 50.0% | |
| !! | CAATGTGTTGACTCCTGTCC+TGG | + | chr2_1:65665449-65665468 | Msa0218490:CDS | 50.0% |
| ATCTGCTGTTGAACCAGGAC+AGG | - | chr2_1:65665465-65665484 | None:intergenic | 50.0% | |
| CTAGCATCTGCTGTTGAACC+AGG | - | chr2_1:65665470-65665489 | None:intergenic | 50.0% | |
| CAATTCCTGCCATCCAAAGG+GGG | - | chr2_1:65665549-65665568 | None:intergenic | 50.0% | |
| GGAAACGGAGTCACATGTCT+GGG | - | chr2_1:65666173-65666192 | None:intergenic | 50.0% | |
| GCTTAACTGGTTGAGGCTTC+AGG | - | chr2_1:65666800-65666819 | None:intergenic | 50.0% | |
| GGATTTGTCGGAACCGCCAT+GGG | - | chr2_1:65661190-65661209 | None:intergenic | 55.0% | |
| TGGATTTGTCGGAACCGCCA+TGG | - | chr2_1:65661191-65661210 | None:intergenic | 55.0% | |
| CTTGCCTTTGGATTCCGCCT+CGG | + | chr2_1:65661554-65661573 | Msa0218490:CDS | 55.0% | |
| TTGACCGAGGCGGAATCCAA+AGG | - | chr2_1:65661561-65661580 | None:intergenic | 55.0% | |
| TTGGATTCCGCCTCGGTCAA+CGG | + | chr2_1:65661561-65661580 | Msa0218490:CDS | 55.0% | |
| CTCGGTCAACGGAGTTGCTT+CGG | + | chr2_1:65661572-65661591 | Msa0218490:CDS | 55.0% | |
| TAACCAAGGCTCCTCGGCTA+GGG | - | chr2_1:65661602-65661621 | None:intergenic | 55.0% | |
| ATAACCAAGGCTCCTCGGCT+AGG | - | chr2_1:65661603-65661622 | None:intergenic | 55.0% | |
| GAACGTTCTGGTGCTTCGGT+TGG | + | chr2_1:65661774-65661793 | Msa0218490:CDS | 55.0% | |
| ! | TTCTGGTGCTTCGGTTGGTG+AGG | + | chr2_1:65661779-65661798 | Msa0218490:CDS | 55.0% |
| CTGTGATCTAATCCCCCAGG+TGG | + | chr2_1:65662605-65662624 | Msa0218490:intron | 55.0% | |
| ! | CTCACCACTTTGAAGGCCCA+CGG | - | chr2_1:65664176-65664195 | None:intergenic | 55.0% |
| CTTCCACCCATGCTGAAGCT+TGG | + | chr2_1:65664535-65664554 | Msa0218490:CDS | 55.0% | |
| ! | CCACCTAAGAGGCACGAATC+TGG | - | chr2_1:65665248-65665267 | None:intergenic | 55.0% |
| CCAGATTCGTGCCTCTTAGG+TGG | + | chr2_1:65665245-65665264 | Msa0218490:intron | 55.0% | |
| !! | ATTCTGAGGCCCCCTTTGGA+TGG | + | chr2_1:65665537-65665556 | Msa0218490:intron | 55.0% |
| GGGAAACGGAGTCACATGTC+TGG | - | chr2_1:65666174-65666193 | None:intergenic | 55.0% | |
| AGCAACTCCGTTGACCGAGG+CGG | - | chr2_1:65661571-65661590 | None:intergenic | 60.0% | |
| CGAAGCAACTCCGTTGACCG+AGG | - | chr2_1:65661574-65661593 | None:intergenic | 60.0% | |
| TGGAGAGACCGACCACTACC+AGG | - | chr2_1:65662385-65662404 | None:intergenic | 60.0% | |
| CACAGCAGTTCCCGACCTAC+AGG | - | chr2_1:65665049-65665068 | None:intergenic | 60.0% | |
| !! | TGCGATTCTGAGGCCCCCTT+TGG | + | chr2_1:65665533-65665552 | Msa0218490:intron | 60.0% |
| GAGCTCGAGCACGAGCACGA+TGG | + | chr2_1:65661238-65661257 | Msa0218490:CDS | 65.0% | |
| GCTTCGGATGACCCTAGCCG+AGG | + | chr2_1:65661588-65661607 | Msa0218490:CDS | 65.0% | |
| TGACCCTAGCCGAGGAGCCT+TGG | + | chr2_1:65661596-65661615 | Msa0218490:CDS | 65.0% | |
| TGAGGCCCCCTTTGGATGGC+AGG | + | chr2_1:65665541-65665560 | Msa0218490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 65661109 | 65666856 | 65661109 | ID=Msa0218490;Name=Msa0218490 |
| chr2_1 | mRNA | 65661109 | 65666856 | 65661109 | ID=Msa0218490-mRNA-1;Parent=Msa0218490;Name=Msa0218490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=81|0.88|0.9|1|1|1|10|136|503 |
| chr2_1 | exon | 65661109 | 65661294 | 65661109 | ID=Msa0218490-mRNA-1:exon:18313;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65661495 | 65661803 | 65661495 | ID=Msa0218490-mRNA-1:exon:18314;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65662624 | 65662689 | 65662624 | ID=Msa0218490-mRNA-1:exon:18315;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65662830 | 65662969 | 65662830 | ID=Msa0218490-mRNA-1:exon:18316;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65664165 | 65664291 | 65664165 | ID=Msa0218490-mRNA-1:exon:18317;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65664478 | 65664632 | 65664478 | ID=Msa0218490-mRNA-1:exon:18318;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65664792 | 65664927 | 65664792 | ID=Msa0218490-mRNA-1:exon:18319;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65665053 | 65665137 | 65665053 | ID=Msa0218490-mRNA-1:exon:18320;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65665249 | 65665499 | 65665249 | ID=Msa0218490-mRNA-1:exon:18321;Parent=Msa0218490-mRNA-1 |
| chr2_1 | exon | 65666583 | 65666856 | 65666583 | ID=Msa0218490-mRNA-1:exon:18322;Parent=Msa0218490-mRNA-1 |
| chr2_1 | five_prime_UTR | 65661109 | 65661189 | 65661109 | ID=Msa0218490-mRNA-1:five_prime_utr;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65661190 | 65661294 | 65661190 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65661495 | 65661803 | 65661495 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65662624 | 65662689 | 65662624 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65662830 | 65662969 | 65662830 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65664165 | 65664291 | 65664165 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65664478 | 65664632 | 65664478 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65664792 | 65664927 | 65664792 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65665053 | 65665137 | 65665053 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65665249 | 65665499 | 65665249 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | CDS | 65666583 | 65666720 | 65666583 | ID=Msa0218490-mRNA-1:cds;Parent=Msa0218490-mRNA-1 |
| chr2_1 | three_prime_UTR | 65666721 | 65666856 | 65666721 | ID=Msa0218490-mRNA-1:three_prime_utr;Parent=Msa0218490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
