Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434720 | XP_003611434.1 | 99.275 | 138 | 1 | 0 | 1 | 138 | 1 | 138 | 3.09e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434720 | sp|Q9AST6|VSP55_ARATH | 67.647 | 136 | 43 | 1 | 1 | 135 | 1 | 136 | 5.30e-62 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434720 | G7JZT8 | 99.275 | 138 | 1 | 0 | 1 | 138 | 1 | 138 | 1.47e-92 | 273 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0755170 | Msa1434720 | 0.827860 | 1.238885e-54 | -8.615850e-47 |
| Msa0755350 | Msa1434720 | 0.900930 | 4.472815e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434720 | MtrunA17_Chr5g0400201 | 99.275 | 138 | 1 | 0 | 1 | 138 | 1 | 138 | 2.84e-96 | 273 |
| Msa1434720 | MtrunA17_Chr7g0266711 | 53.097 | 113 | 53 | 0 | 23 | 135 | 1 | 113 | 1.94e-36 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1434720 | AT1G32410.3 | 67.647 | 136 | 43 | 1 | 1 | 135 | 1 | 136 | 5.39e-63 | 189 |
| Msa1434720 | AT1G32410.4 | 67.647 | 136 | 43 | 1 | 1 | 135 | 1 | 136 | 5.39e-63 | 189 |
| Msa1434720 | AT1G32410.1 | 67.647 | 136 | 43 | 1 | 1 | 135 | 1 | 136 | 5.39e-63 | 189 |
| Msa1434720 | AT1G32410.2 | 67.647 | 136 | 43 | 1 | 1 | 135 | 1 | 136 | 5.39e-63 | 189 |
| Msa1434720 | AT1G32410.5 | 67.647 | 136 | 43 | 1 | 1 | 135 | 1 | 136 | 5.39e-63 | 189 |
| Msa1434720 | AT3G11530.1 | 49.558 | 113 | 57 | 0 | 23 | 135 | 1 | 113 | 7.32e-35 | 117 |
| Msa1434720 | AT3G11530.2 | 49.558 | 113 | 57 | 0 | 23 | 135 | 1 | 113 | 7.32e-35 | 117 |
| Msa1434720 | AT3G11530.3 | 45.652 | 92 | 50 | 0 | 44 | 135 | 1 | 92 | 7.96e-23 | 86.3 |
Find 53 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCAAAAGCAAACAATTTA+TGG | 0.117700 | tig0027591:-1934 | None:intergenic |
| AGGAATCGTCTTACAAATTT+TGG | 0.200860 | tig0027591:+1032 | Msa1434720:CDS |
| ATGCCGTTGCTGTTCTTTGC+TGG | 0.234696 | tig0027591:+1354 | Msa1434720:CDS |
| TTCAATAAGGTTTGCATCAT+TGG | 0.243794 | tig0027591:+1809 | Msa1434720:three_prime_UTR |
| TATGAAACAGGAGTTCAATA+AGG | 0.353730 | tig0027591:+1796 | Msa1434720:exon |
| CTGTTCTTTGCTGGGTCTGA+TGG | 0.357081 | tig0027591:+1363 | Msa1434720:CDS |
| TGCCGTTGCTGTTCTTTGCT+GGG | 0.388184 | tig0027591:+1355 | Msa1434720:CDS |
| AATTTCGGCAAGTTCTTAAC+CGG | 0.397297 | tig0027591:+1615 | Msa1434720:CDS |
| CATCCACAGGAAACACAATA+TGG | 0.410235 | tig0027591:-1748 | None:intergenic |
| CTCTGTAGAAACACAGCTAT+TGG | 0.410517 | tig0027591:+2019 | Msa1434720:three_prime_UTR |
| CATGTGCTTTGTATAATAAT+TGG | 0.413950 | tig0027591:+1162 | Msa1434720:CDS |
| TGGTGCAGCTGGGTGAATTT+CGG | 0.434061 | tig0027591:+1600 | Msa1434720:intron |
| GTTACAGTATGCTATGAAAC+AGG | 0.435514 | tig0027591:+1784 | Msa1434720:exon |
| GAAGAACAGAGGTGGAAAGG+TGG | 0.435810 | tig0027591:-1985 | None:intergenic |
| CGGTTGGGCAGCCTTTGCAT+TGG | 0.450746 | tig0027591:+1695 | Msa1434720:CDS |
| CAGAGGTGGAAAGGTGGAGA+AGG | 0.452632 | tig0027591:-1979 | None:intergenic |
| AGTGAAGAACAGAGGTGGAA+AGG | 0.471092 | tig0027591:-1988 | None:intergenic |
| CCAGCATGTATTAATATGCT+TGG | 0.485609 | tig0027591:-1666 | None:intergenic |
| AATTGGTGGCCGATGCTTAG+TGG | 0.489280 | tig0027591:+1179 | Msa1434720:CDS |
| AGAAATCAATAGCACGCAAA+AGG | 0.498561 | tig0027591:-1850 | None:intergenic |
| TTTATCAATATTTGAACTGA+GGG | 0.500578 | tig0027591:-1905 | None:intergenic |
| ATTGAGCAGCACTCTTGTAA+TGG | 0.507513 | tig0027591:-2045 | None:intergenic |
| TACATGCTGGTGTGATCGGT+TGG | 0.512206 | tig0027591:+1679 | Msa1434720:CDS |
| GTGGAAAGGTGGAGAAGGAG+AGG | 0.513270 | tig0027591:-1974 | None:intergenic |
| GCCTCCGAGAGTTGAGGCTC+CGG | 0.515791 | tig0027591:-1634 | None:intergenic |
| GCAAAGAACAGCAACGGCAT+TGG | 0.515874 | tig0027591:-1351 | None:intergenic |
| ATATTTGAACTGAGGGGAGG+AGG | 0.528595 | tig0027591:-1898 | None:intergenic |
| TGGAAGATGGATGACATACC+AGG | 0.532972 | tig0027591:+949 | Msa1434720:exon |
| AAACAGTAACGTACATATCC+TGG | 0.534955 | tig0027591:-967 | None:intergenic |
| ATGTTTAGAGTGAAGAACAG+AGG | 0.550751 | tig0027591:-1996 | None:intergenic |
| CTCGTAAGCACTAAGCTATG+AGG | 0.552307 | tig0027591:-877 | None:intergenic |
| AGAAGAGAGTTCCAATGCAA+AGG | 0.555565 | tig0027591:-1706 | None:intergenic |
| CCAAGCATATTAATACATGC+TGG | 0.560109 | tig0027591:+1666 | Msa1434720:CDS |
| TACGTTACTGTTTCAACACA+GGG | 0.563039 | tig0027591:+977 | Msa1434720:CDS |
| ACATGCTGGTGTGATCGGTT+GGG | 0.569252 | tig0027591:+1680 | Msa1434720:CDS |
| TTAACCGGAGCCTCAACTCT+CGG | 0.570335 | tig0027591:+1630 | Msa1434720:CDS |
| TTTAGAGTGAAGAACAGAGG+TGG | 0.584551 | tig0027591:-1993 | None:intergenic |
| TTAATACATGCTGGTGTGAT+CGG | 0.586015 | tig0027591:+1675 | Msa1434720:CDS |
| TATCTTCATCACTCATCCAC+AGG | 0.587041 | tig0027591:-1761 | None:intergenic |
| AACATGAGGTGACTGGAAGA+TGG | 0.587821 | tig0027591:+936 | Msa1434720:exon |
| GTTTATCAATATTTGAACTG+AGG | 0.588641 | tig0027591:-1906 | None:intergenic |
| TTTATCTTACCACTAAGCAT+CGG | 0.589779 | tig0027591:-1188 | None:intergenic |
| CGCAATGCCTCCGAGAGTTG+AGG | 0.595677 | tig0027591:-1640 | None:intergenic |
| TAGCCATATTGTGTTTCCTG+TGG | 0.596306 | tig0027591:+1745 | Msa1434720:CDS |
| TCGTAAGCACTAAGCTATGA+GGG | 0.596980 | tig0027591:-876 | None:intergenic |
| GTGCTTTGTATAATAATTGG+TGG | 0.599825 | tig0027591:+1165 | Msa1434720:CDS |
| GTACGTTACTGTTTCAACAC+AGG | 0.600532 | tig0027591:+976 | Msa1434720:CDS |
| TCAATATTTGAACTGAGGGG+AGG | 0.603101 | tig0027591:-1901 | None:intergenic |
| GACCCAGCAAAGAACAGCAA+CGG | 0.621058 | tig0027591:-1357 | None:intergenic |
| TCTCTGTAACATGAGGTGAC+TGG | 0.685080 | tig0027591:+929 | Msa1434720:five_prime_UTR |
| ACCGGAGCCTCAACTCTCGG+AGG | 0.710836 | tig0027591:+1633 | Msa1434720:CDS |
| TTATCAATATTTGAACTGAG+GGG | 0.710943 | tig0027591:-1904 | None:intergenic |
| TGCTTGCTCTCTGTAACATG+AGG | 0.711732 | tig0027591:+922 | Msa1434720:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTCTTTATGAATAAAATCA+TGG | - | tig0027591:1074-1093 | None:intergenic | 20.0% |
| !!! | AGTTTAAATGTTTTCTTTGA+TGG | + | tig0027591:1242-1261 | Msa1434720:intron | 20.0% |
| !!! | TAATAGGTAAGCTTTTATTT+TGG | + | tig0027591:1410-1429 | Msa1434720:intron | 20.0% |
| !! | TTTATCAATATTTGAACTGA+GGG | - | tig0027591:1908-1927 | None:intergenic | 20.0% |
| !! | TCTCTTTATGAATAAAATCA+TGG | - | tig0027591:1074-1093 | None:intergenic | 20.0% |
| !!! | AGTTTAAATGTTTTCTTTGA+TGG | + | tig0027591:1242-1261 | Msa1434720:intron | 20.0% |
| !!! | TAATAGGTAAGCTTTTATTT+TGG | + | tig0027591:1410-1429 | Msa1434720:intron | 20.0% |
| !! | TTTATCAATATTTGAACTGA+GGG | - | tig0027591:1908-1927 | None:intergenic | 20.0% |
| ! | GAAAAAAGTTGACAACTATT+TGG | + | tig0027591:1092-1111 | Msa1434720:intron | 25.0% |
| ! | CATGTGCTTTGTATAATAAT+TGG | + | tig0027591:1162-1181 | Msa1434720:CDS | 25.0% |
| !! | TGTTTTCTGAATCTGATAAT+AGG | + | tig0027591:1394-1413 | Msa1434720:CDS | 25.0% |
| ! | TTATCAATATTTGAACTGAG+GGG | - | tig0027591:1907-1926 | None:intergenic | 25.0% |
| ! | GTTTATCAATATTTGAACTG+AGG | - | tig0027591:1909-1928 | None:intergenic | 25.0% |
| ! | GAAAAAAGTTGACAACTATT+TGG | + | tig0027591:1092-1111 | Msa1434720:intron | 25.0% |
| ! | CATGTGCTTTGTATAATAAT+TGG | + | tig0027591:1162-1181 | Msa1434720:CDS | 25.0% |
| !! | TGTTTTCTGAATCTGATAAT+AGG | + | tig0027591:1394-1413 | Msa1434720:CDS | 25.0% |
| ! | TTATCAATATTTGAACTGAG+GGG | - | tig0027591:1907-1926 | None:intergenic | 25.0% |
| ! | GTTTATCAATATTTGAACTG+AGG | - | tig0027591:1909-1928 | None:intergenic | 25.0% |
| ! | AGGAATCGTCTTACAAATTT+TGG | + | tig0027591:1032-1051 | Msa1434720:CDS | 30.0% |
| !! | ATCGTCTTACAAATTTTGGT+CGG | + | tig0027591:1036-1055 | Msa1434720:intron | 30.0% |
| GTGCTTTGTATAATAATTGG+TGG | + | tig0027591:1165-1184 | Msa1434720:CDS | 30.0% | |
| TTTATCTTACCACTAAGCAT+CGG | - | tig0027591:1191-1210 | None:intergenic | 30.0% | |
| ! | TTTCTTTGATGGCATTGTTA+CGG | + | tig0027591:1253-1272 | Msa1434720:intron | 30.0% |
| !! | AAGATCTGAATGCTTTAGAA+AGG | + | tig0027591:1504-1523 | Msa1434720:intron | 30.0% |
| TAATCACTCATCTCAAGATA+TGG | - | tig0027591:1544-1563 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGTGATTTGCTGAA+TGG | + | tig0027591:1577-1596 | Msa1434720:intron | 30.0% |
| TATGAAACAGGAGTTCAATA+AGG | + | tig0027591:1796-1815 | Msa1434720:exon | 30.0% | |
| TTCAATAAGGTTTGCATCAT+TGG | + | tig0027591:1809-1828 | Msa1434720:three_prime_UTR | 30.0% | |
| ACGCAAAAGCAAACAATTTA+TGG | - | tig0027591:1937-1956 | None:intergenic | 30.0% | |
| ! | AGGAATCGTCTTACAAATTT+TGG | + | tig0027591:1032-1051 | Msa1434720:CDS | 30.0% |
| !! | ATCGTCTTACAAATTTTGGT+CGG | + | tig0027591:1036-1055 | Msa1434720:intron | 30.0% |
| GTGCTTTGTATAATAATTGG+TGG | + | tig0027591:1165-1184 | Msa1434720:CDS | 30.0% | |
| TTTATCTTACCACTAAGCAT+CGG | - | tig0027591:1191-1210 | None:intergenic | 30.0% | |
| ! | TTTCTTTGATGGCATTGTTA+CGG | + | tig0027591:1253-1272 | Msa1434720:intron | 30.0% |
| !! | AAGATCTGAATGCTTTAGAA+AGG | + | tig0027591:1504-1523 | Msa1434720:intron | 30.0% |
| TAATCACTCATCTCAAGATA+TGG | - | tig0027591:1544-1563 | None:intergenic | 30.0% | |
| !!! | TTGTTTTGTGATTTGCTGAA+TGG | + | tig0027591:1577-1596 | Msa1434720:intron | 30.0% |
| TATGAAACAGGAGTTCAATA+AGG | + | tig0027591:1796-1815 | Msa1434720:exon | 30.0% | |
| TTCAATAAGGTTTGCATCAT+TGG | + | tig0027591:1809-1828 | Msa1434720:three_prime_UTR | 30.0% | |
| ACGCAAAAGCAAACAATTTA+TGG | - | tig0027591:1937-1956 | None:intergenic | 30.0% | |
| AAACAGTAACGTACATATCC+TGG | - | tig0027591:970-989 | None:intergenic | 35.0% | |
| TACGTTACTGTTTCAACACA+GGG | + | tig0027591:977-996 | Msa1434720:CDS | 35.0% | |
| ! | AACTTGTGTTTTGTGTTGTC+AGG | + | tig0027591:1139-1158 | Msa1434720:intron | 35.0% |
| CATTTAAACTTGCAGTGTAC+TGG | - | tig0027591:1232-1251 | None:intergenic | 35.0% | |
| ! | TTCTTTGATGGCATTGTTAC+GGG | + | tig0027591:1254-1273 | Msa1434720:intron | 35.0% |
| ATGTAATAACCACCAACCAA+GGG | - | tig0027591:1289-1308 | None:intergenic | 35.0% | |
| AATGTAATAACCACCAACCA+AGG | - | tig0027591:1290-1309 | None:intergenic | 35.0% | |
| !! | TGGTTGGTGGTTATTACATT+CGG | + | tig0027591:1290-1309 | Msa1434720:intron | 35.0% |
| ! | GAAGTAAGATCGTTCAGTTT+TGG | + | tig0027591:1442-1461 | Msa1434720:intron | 35.0% |
| !!! | TTTTGTGATTTGCTGAATGG+TGG | + | tig0027591:1580-1599 | Msa1434720:intron | 35.0% |
| AATTTCGGCAAGTTCTTAAC+CGG | + | tig0027591:1615-1634 | Msa1434720:CDS | 35.0% | |
| CCAGCATGTATTAATATGCT+TGG | - | tig0027591:1669-1688 | None:intergenic | 35.0% | |
| CCAAGCATATTAATACATGC+TGG | + | tig0027591:1666-1685 | Msa1434720:CDS | 35.0% | |
| TTAATACATGCTGGTGTGAT+CGG | + | tig0027591:1675-1694 | Msa1434720:CDS | 35.0% | |
| GTTACAGTATGCTATGAAAC+AGG | + | tig0027591:1784-1803 | Msa1434720:exon | 35.0% | |
| AGAAATCAATAGCACGCAAA+AGG | - | tig0027591:1853-1872 | None:intergenic | 35.0% | |
| ! | ATGTTTAGAGTGAAGAACAG+AGG | - | tig0027591:1999-2018 | None:intergenic | 35.0% |
| AAACAGTAACGTACATATCC+TGG | - | tig0027591:970-989 | None:intergenic | 35.0% | |
| TACGTTACTGTTTCAACACA+GGG | + | tig0027591:977-996 | Msa1434720:CDS | 35.0% | |
| ! | AACTTGTGTTTTGTGTTGTC+AGG | + | tig0027591:1139-1158 | Msa1434720:intron | 35.0% |
| CATTTAAACTTGCAGTGTAC+TGG | - | tig0027591:1232-1251 | None:intergenic | 35.0% | |
| ! | TTCTTTGATGGCATTGTTAC+GGG | + | tig0027591:1254-1273 | Msa1434720:intron | 35.0% |
| ATGTAATAACCACCAACCAA+GGG | - | tig0027591:1289-1308 | None:intergenic | 35.0% | |
| AATGTAATAACCACCAACCA+AGG | - | tig0027591:1290-1309 | None:intergenic | 35.0% | |
| !! | TGGTTGGTGGTTATTACATT+CGG | + | tig0027591:1290-1309 | Msa1434720:intron | 35.0% |
| ! | GAAGTAAGATCGTTCAGTTT+TGG | + | tig0027591:1442-1461 | Msa1434720:intron | 35.0% |
| !!! | TTTTGTGATTTGCTGAATGG+TGG | + | tig0027591:1580-1599 | Msa1434720:intron | 35.0% |
| AATTTCGGCAAGTTCTTAAC+CGG | + | tig0027591:1615-1634 | Msa1434720:CDS | 35.0% | |
| CCAGCATGTATTAATATGCT+TGG | - | tig0027591:1669-1688 | None:intergenic | 35.0% | |
| CCAAGCATATTAATACATGC+TGG | + | tig0027591:1666-1685 | Msa1434720:CDS | 35.0% | |
| TTAATACATGCTGGTGTGAT+CGG | + | tig0027591:1675-1694 | Msa1434720:CDS | 35.0% | |
| GTTACAGTATGCTATGAAAC+AGG | + | tig0027591:1784-1803 | Msa1434720:exon | 35.0% | |
| AGAAATCAATAGCACGCAAA+AGG | - | tig0027591:1853-1872 | None:intergenic | 35.0% | |
| ! | ATGTTTAGAGTGAAGAACAG+AGG | - | tig0027591:1999-2018 | None:intergenic | 35.0% |
| GTACGTTACTGTTTCAACAC+AGG | + | tig0027591:976-995 | Msa1434720:CDS | 40.0% | |
| !! | GCTTCTCTTTTTGGCACTTT+TGG | + | tig0027591:1002-1021 | Msa1434720:CDS | 40.0% |
| !! | TTTTTGGCACTTTTGGTCTC+AGG | + | tig0027591:1009-1028 | Msa1434720:CDS | 40.0% |
| ! | TCTTTGATGGCATTGTTACG+GGG | + | tig0027591:1255-1274 | Msa1434720:intron | 40.0% |
| TGTAATAACCACCAACCAAG+GGG | - | tig0027591:1288-1307 | None:intergenic | 40.0% | |
| AGAAGAGAGTTCCAATGCAA+AGG | - | tig0027591:1709-1728 | None:intergenic | 40.0% | |
| TAGCCATATTGTGTTTCCTG+TGG | + | tig0027591:1745-1764 | Msa1434720:CDS | 40.0% | |
| CATCCACAGGAAACACAATA+TGG | - | tig0027591:1751-1770 | None:intergenic | 40.0% | |
| TATCTTCATCACTCATCCAC+AGG | - | tig0027591:1764-1783 | None:intergenic | 40.0% | |
| TCAATATTTGAACTGAGGGG+AGG | - | tig0027591:1904-1923 | None:intergenic | 40.0% | |
| ! | TTTAGAGTGAAGAACAGAGG+TGG | - | tig0027591:1996-2015 | None:intergenic | 40.0% |
| CTCTGTAGAAACACAGCTAT+TGG | + | tig0027591:2019-2038 | Msa1434720:three_prime_UTR | 40.0% | |
| ATTGAGCAGCACTCTTGTAA+TGG | - | tig0027591:2048-2067 | None:intergenic | 40.0% | |
| GTACGTTACTGTTTCAACAC+AGG | + | tig0027591:976-995 | Msa1434720:CDS | 40.0% | |
| !! | GCTTCTCTTTTTGGCACTTT+TGG | + | tig0027591:1002-1021 | Msa1434720:CDS | 40.0% |
| !! | TTTTTGGCACTTTTGGTCTC+AGG | + | tig0027591:1009-1028 | Msa1434720:CDS | 40.0% |
| ! | TCTTTGATGGCATTGTTACG+GGG | + | tig0027591:1255-1274 | Msa1434720:intron | 40.0% |
| TGTAATAACCACCAACCAAG+GGG | - | tig0027591:1288-1307 | None:intergenic | 40.0% | |
| AGAAGAGAGTTCCAATGCAA+AGG | - | tig0027591:1709-1728 | None:intergenic | 40.0% | |
| TAGCCATATTGTGTTTCCTG+TGG | + | tig0027591:1745-1764 | Msa1434720:CDS | 40.0% | |
| CATCCACAGGAAACACAATA+TGG | - | tig0027591:1751-1770 | None:intergenic | 40.0% | |
| TATCTTCATCACTCATCCAC+AGG | - | tig0027591:1764-1783 | None:intergenic | 40.0% | |
| TCAATATTTGAACTGAGGGG+AGG | - | tig0027591:1904-1923 | None:intergenic | 40.0% | |
| ! | TTTAGAGTGAAGAACAGAGG+TGG | - | tig0027591:1996-2015 | None:intergenic | 40.0% |
| CTCTGTAGAAACACAGCTAT+TGG | + | tig0027591:2019-2038 | Msa1434720:three_prime_UTR | 40.0% | |
| ATTGAGCAGCACTCTTGTAA+TGG | - | tig0027591:2048-2067 | None:intergenic | 40.0% | |
| CTCGTAAGCACTAAGCTATG+AGG | - | tig0027591:880-899 | None:intergenic | 45.0% | |
| TGCTTGCTCTCTGTAACATG+AGG | + | tig0027591:922-941 | Msa1434720:five_prime_UTR | 45.0% | |
| TCTCTGTAACATGAGGTGAC+TGG | + | tig0027591:929-948 | Msa1434720:five_prime_UTR | 45.0% | |
| AACATGAGGTGACTGGAAGA+TGG | + | tig0027591:936-955 | Msa1434720:exon | 45.0% | |
| TGGAAGATGGATGACATACC+AGG | + | tig0027591:949-968 | Msa1434720:exon | 45.0% | |
| ! | CACAGGGAAGCTTCTCTTTT+TGG | + | tig0027591:993-1012 | Msa1434720:CDS | 45.0% |
| ATATTTGAACTGAGGGGAGG+AGG | - | tig0027591:1901-1920 | None:intergenic | 45.0% | |
| AGTGAAGAACAGAGGTGGAA+AGG | - | tig0027591:1991-2010 | None:intergenic | 45.0% | |
| CTCGTAAGCACTAAGCTATG+AGG | - | tig0027591:880-899 | None:intergenic | 45.0% | |
| TGCTTGCTCTCTGTAACATG+AGG | + | tig0027591:922-941 | Msa1434720:five_prime_UTR | 45.0% | |
| TCTCTGTAACATGAGGTGAC+TGG | + | tig0027591:929-948 | Msa1434720:five_prime_UTR | 45.0% | |
| AACATGAGGTGACTGGAAGA+TGG | + | tig0027591:936-955 | Msa1434720:exon | 45.0% | |
| TGGAAGATGGATGACATACC+AGG | + | tig0027591:949-968 | Msa1434720:exon | 45.0% | |
| ! | CACAGGGAAGCTTCTCTTTT+TGG | + | tig0027591:993-1012 | Msa1434720:CDS | 45.0% |
| ATATTTGAACTGAGGGGAGG+AGG | - | tig0027591:1901-1920 | None:intergenic | 45.0% | |
| AGTGAAGAACAGAGGTGGAA+AGG | - | tig0027591:1991-2010 | None:intergenic | 45.0% | |
| ! | TTGGCACTTTTGGTCTCAGG+AGG | + | tig0027591:1012-1031 | Msa1434720:CDS | 50.0% |
| ! | AATTGGTGGCCGATGCTTAG+TGG | + | tig0027591:1179-1198 | Msa1434720:CDS | 50.0% |
| TTACGGGGAGAAAATCCCCT+TGG | + | tig0027591:1270-1289 | Msa1434720:intron | 50.0% | |
| GAGAAAATCCCCTTGGTTGG+TGG | + | tig0027591:1277-1296 | Msa1434720:intron | 50.0% | |
| GCAAAGAACAGCAACGGCAT+TGG | - | tig0027591:1354-1373 | None:intergenic | 50.0% | |
| ! | ATGCCGTTGCTGTTCTTTGC+TGG | + | tig0027591:1354-1373 | Msa1434720:CDS | 50.0% |
| ! | TGCCGTTGCTGTTCTTTGCT+GGG | + | tig0027591:1355-1374 | Msa1434720:CDS | 50.0% |
| GACCCAGCAAAGAACAGCAA+CGG | - | tig0027591:1360-1379 | None:intergenic | 50.0% | |
| CTGTTCTTTGCTGGGTCTGA+TGG | + | tig0027591:1363-1382 | Msa1434720:CDS | 50.0% | |
| TGGTGCAGCTGGGTGAATTT+CGG | + | tig0027591:1600-1619 | Msa1434720:intron | 50.0% | |
| TTAACCGGAGCCTCAACTCT+CGG | + | tig0027591:1630-1649 | Msa1434720:CDS | 50.0% | |
| TACATGCTGGTGTGATCGGT+TGG | + | tig0027591:1679-1698 | Msa1434720:CDS | 50.0% | |
| ACATGCTGGTGTGATCGGTT+GGG | + | tig0027591:1680-1699 | Msa1434720:CDS | 50.0% | |
| GAAGAACAGAGGTGGAAAGG+TGG | - | tig0027591:1988-2007 | None:intergenic | 50.0% | |
| ! | TTGGCACTTTTGGTCTCAGG+AGG | + | tig0027591:1012-1031 | Msa1434720:CDS | 50.0% |
| ! | AATTGGTGGCCGATGCTTAG+TGG | + | tig0027591:1179-1198 | Msa1434720:CDS | 50.0% |
| TTACGGGGAGAAAATCCCCT+TGG | + | tig0027591:1270-1289 | Msa1434720:intron | 50.0% | |
| GAGAAAATCCCCTTGGTTGG+TGG | + | tig0027591:1277-1296 | Msa1434720:intron | 50.0% | |
| GCAAAGAACAGCAACGGCAT+TGG | - | tig0027591:1354-1373 | None:intergenic | 50.0% | |
| ! | ATGCCGTTGCTGTTCTTTGC+TGG | + | tig0027591:1354-1373 | Msa1434720:CDS | 50.0% |
| ! | TGCCGTTGCTGTTCTTTGCT+GGG | + | tig0027591:1355-1374 | Msa1434720:CDS | 50.0% |
| GACCCAGCAAAGAACAGCAA+CGG | - | tig0027591:1360-1379 | None:intergenic | 50.0% | |
| CTGTTCTTTGCTGGGTCTGA+TGG | + | tig0027591:1363-1382 | Msa1434720:CDS | 50.0% | |
| TGGTGCAGCTGGGTGAATTT+CGG | + | tig0027591:1600-1619 | Msa1434720:intron | 50.0% | |
| TTAACCGGAGCCTCAACTCT+CGG | + | tig0027591:1630-1649 | Msa1434720:CDS | 50.0% | |
| TACATGCTGGTGTGATCGGT+TGG | + | tig0027591:1679-1698 | Msa1434720:CDS | 50.0% | |
| ACATGCTGGTGTGATCGGTT+GGG | + | tig0027591:1680-1699 | Msa1434720:CDS | 50.0% | |
| GAAGAACAGAGGTGGAAAGG+TGG | - | tig0027591:1988-2007 | None:intergenic | 50.0% | |
| GGGGAGAAAATCCCCTTGGT+TGG | + | tig0027591:1274-1293 | Msa1434720:intron | 55.0% | |
| ! | TTGCTGAATGGTGGTGCAGC+TGG | + | tig0027591:1589-1608 | Msa1434720:intron | 55.0% |
| ! | TGCTGAATGGTGGTGCAGCT+GGG | + | tig0027591:1590-1609 | Msa1434720:intron | 55.0% |
| GTGGAAAGGTGGAGAAGGAG+AGG | - | tig0027591:1977-1996 | None:intergenic | 55.0% | |
| CAGAGGTGGAAAGGTGGAGA+AGG | - | tig0027591:1982-2001 | None:intergenic | 55.0% | |
| GGGGAGAAAATCCCCTTGGT+TGG | + | tig0027591:1274-1293 | Msa1434720:intron | 55.0% | |
| ! | TTGCTGAATGGTGGTGCAGC+TGG | + | tig0027591:1589-1608 | Msa1434720:intron | 55.0% |
| ! | TGCTGAATGGTGGTGCAGCT+GGG | + | tig0027591:1590-1609 | Msa1434720:intron | 55.0% |
| GTGGAAAGGTGGAGAAGGAG+AGG | - | tig0027591:1977-1996 | None:intergenic | 55.0% | |
| CAGAGGTGGAAAGGTGGAGA+AGG | - | tig0027591:1982-2001 | None:intergenic | 55.0% | |
| CGCAATGCCTCCGAGAGTTG+AGG | - | tig0027591:1643-1662 | None:intergenic | 60.0% | |
| CGGTTGGGCAGCCTTTGCAT+TGG | + | tig0027591:1695-1714 | Msa1434720:CDS | 60.0% | |
| CGCAATGCCTCCGAGAGTTG+AGG | - | tig0027591:1643-1662 | None:intergenic | 60.0% | |
| CGGTTGGGCAGCCTTTGCAT+TGG | + | tig0027591:1695-1714 | Msa1434720:CDS | 60.0% | |
| ACCGGAGCCTCAACTCTCGG+AGG | + | tig0027591:1633-1652 | Msa1434720:CDS | 65.0% | |
| GCCTCCGAGAGTTGAGGCTC+CGG | - | tig0027591:1637-1656 | None:intergenic | 65.0% | |
| ACCGGAGCCTCAACTCTCGG+AGG | + | tig0027591:1633-1652 | Msa1434720:CDS | 65.0% | |
| GCCTCCGAGAGTTGAGGCTC+CGG | - | tig0027591:1637-1656 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027591 | gene | 877 | 2080 | 877 | ID=Msa1434720;Name=Msa1434720 |
| tig0027591 | mRNA | 877 | 2080 | 877 | ID=Msa1434720-mRNA-1;Parent=Msa1434720;Name=Msa1434720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=78|1|1|1|0.66|0.75|4|280|138 |
| tig0027591 | exon | 877 | 1053 | 877 | ID=Msa1434720-mRNA-1:exon:9313;Parent=Msa1434720-mRNA-1 |
| tig0027591 | exon | 1161 | 1200 | 1161 | ID=Msa1434720-mRNA-1:exon:9314;Parent=Msa1434720-mRNA-1 |
| tig0027591 | exon | 1331 | 1415 | 1331 | ID=Msa1434720-mRNA-1:exon:9315;Parent=Msa1434720-mRNA-1 |
| tig0027591 | exon | 1608 | 2080 | 1608 | ID=Msa1434720-mRNA-1:exon:9316;Parent=Msa1434720-mRNA-1 |
| tig0027591 | five_prime_UTR | 877 | 954 | 877 | ID=Msa1434720-mRNA-1:five_prime_utr;Parent=Msa1434720-mRNA-1 |
| tig0027591 | CDS | 955 | 1053 | 955 | ID=Msa1434720-mRNA-1:cds;Parent=Msa1434720-mRNA-1 |
| tig0027591 | CDS | 1161 | 1200 | 1161 | ID=Msa1434720-mRNA-1:cds;Parent=Msa1434720-mRNA-1 |
| tig0027591 | CDS | 1331 | 1415 | 1331 | ID=Msa1434720-mRNA-1:cds;Parent=Msa1434720-mRNA-1 |
| tig0027591 | CDS | 1608 | 1800 | 1608 | ID=Msa1434720-mRNA-1:cds;Parent=Msa1434720-mRNA-1 |
| tig0027591 | three_prime_UTR | 1801 | 2080 | 1801 | ID=Msa1434720-mRNA-1:three_prime_utr;Parent=Msa1434720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
