Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436440 | XP_003594883.2 | 90.631 | 491 | 36 | 1 | 1 | 481 | 1 | 491 | 0.0 | 872 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436440 | sp|O49432|QRT3_ARATH | 49.794 | 486 | 215 | 8 | 6 | 481 | 13 | 479 | 5.17e-152 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436440 | A0A396JAJ4 | 90.631 | 491 | 36 | 1 | 1 | 481 | 1 | 491 | 0.0 | 872 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1436440 | Msa1462440 | 0.802869 | 4.571377e-49 | -8.615850e-47 |
| Msa0243700 | Msa1436440 | 0.834834 | 2.383749e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436440 | MtrunA17_Chr2g0297001 | 90.631 | 491 | 36 | 1 | 1 | 481 | 1 | 491 | 0.0 | 872 |
| Msa1436440 | MtrunA17_Chr4g0052711 | 68.478 | 460 | 140 | 3 | 25 | 481 | 23 | 480 | 0.0 | 629 |
| Msa1436440 | MtrunA17_Chr2g0296981 | 53.269 | 413 | 175 | 7 | 62 | 469 | 82 | 481 | 2.05e-142 | 417 |
| Msa1436440 | MtrunA17_Chr6g0455291 | 53.477 | 417 | 171 | 7 | 69 | 481 | 93 | 490 | 1.88e-134 | 397 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436440 | AT4G20040.1 | 63.380 | 426 | 149 | 5 | 58 | 481 | 63 | 483 | 0.0 | 550 |
| Msa1436440 | AT4G20050.7 | 49.794 | 486 | 215 | 8 | 6 | 481 | 13 | 479 | 5.25e-153 | 444 |
| Msa1436440 | AT4G20050.6 | 49.794 | 486 | 215 | 8 | 6 | 481 | 13 | 479 | 5.25e-153 | 444 |
| Msa1436440 | AT4G20050.2 | 49.794 | 486 | 215 | 8 | 6 | 481 | 13 | 479 | 5.25e-153 | 444 |
| Msa1436440 | AT4G20050.1 | 49.794 | 486 | 215 | 8 | 6 | 481 | 13 | 479 | 5.25e-153 | 444 |
| Msa1436440 | AT4G20050.5 | 49.794 | 486 | 215 | 8 | 6 | 481 | 38 | 504 | 8.68e-153 | 445 |
| Msa1436440 | AT4G20050.4 | 54.500 | 400 | 158 | 7 | 87 | 481 | 1 | 381 | 8.54e-139 | 404 |
| Msa1436440 | AT4G20050.3 | 54.500 | 400 | 158 | 7 | 87 | 481 | 1 | 381 | 8.54e-139 | 404 |
Find 88 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATAAACTTTGCCTTTAA+TGG | 0.026748 | tig0027935:-55939 | Msa1436440:intergenic |
| GCATTTGATATTGATAATTT+AGG | 0.107857 | tig0027935:+53660 | Msa1436440:CDS |
| ACAATTGGAACATTATTATT+AGG | 0.129299 | tig0027935:-55995 | Msa1436440:intergenic |
| TCCATTAAAGGCAAAGTTTA+TGG | 0.143235 | tig0027935:+55938 | Msa1436440:CDS |
| GGATCTGCACCATACTTAAT+TGG | 0.153680 | tig0027935:-53588 | Msa1436440:intergenic |
| CAGCCATTGGAATTGTTCTT+AGG | 0.195596 | tig0027935:+55708 | Msa1436440:CDS |
| AGCATTTCTCTTGTCACTTT+TGG | 0.197047 | tig0027935:+53149 | Msa1436440:CDS |
| CATTTGATATTGATAATTTA+GGG | 0.251344 | tig0027935:+53661 | Msa1436440:CDS |
| GTTCCAATTGTAAAATTAGA+TGG | 0.268649 | tig0027935:+56007 | Msa1436440:CDS |
| CATCAATGACCAAAGGTAAA+TGG | 0.278889 | tig0027935:+55266 | Msa1436440:intron |
| CAATTGGAACATTATTATTA+GGG | 0.285274 | tig0027935:-55994 | Msa1436440:intergenic |
| TATAACAAAGCAACAGGTTT+TGG | 0.286379 | tig0027935:+55764 | Msa1436440:CDS |
| TGAAAATGACTAATCCTATT+AGG | 0.294977 | tig0027935:-56169 | Msa1436440:intergenic |
| ATTGTTAACAATATGTTTAG+TGG | 0.301676 | tig0027935:+55968 | Msa1436440:CDS |
| GTTCAAGTTCATGTTACTAA+TGG | 0.312426 | tig0027935:+55881 | Msa1436440:CDS |
| TGGATGGTAATGGCACAAAA+TGG | 0.367127 | tig0027935:+56116 | Msa1436440:CDS |
| TAATTCCTTCTGTGTTGAAA+TGG | 0.369391 | tig0027935:-55532 | Msa1436440:intergenic |
| AAATGTTTCAGAAGCTCTTA+AGG | 0.373297 | tig0027935:-55294 | Msa1436440:intergenic |
| TACTTGATATGAAGGTTTCA+TGG | 0.388165 | tig0027935:-55568 | Msa1436440:intergenic |
| CCTCCAAGGTCTCTAATTCC+TGG | 0.397675 | tig0027935:-53696 | Msa1436440:intergenic |
| CATTGTTATAACAAAGCAAC+AGG | 0.404226 | tig0027935:+55758 | Msa1436440:CDS |
| AGCTTCTACAGCTTTCATAA+TGG | 0.424025 | tig0027935:-53637 | Msa1436440:intergenic |
| AAGTATGGTGCAGATCCAAC+TGG | 0.430294 | tig0027935:+53594 | Msa1436440:CDS |
| TTGATCAAGTGGTGATTGAT+AGG | 0.431617 | tig0027935:+56044 | Msa1436440:CDS |
| AGCCATTGGAATTGTTCTTA+GGG | 0.433955 | tig0027935:+55709 | Msa1436440:CDS |
| ACTGAATGTGCAACAAACTT+TGG | 0.434126 | tig0027935:-56217 | Msa1436440:intergenic |
| AAGAAAACTACTTGATATGA+AGG | 0.434177 | tig0027935:-55576 | Msa1436440:intergenic |
| GTATTCATTTCATGCATTAG+AGG | 0.440197 | tig0027935:+56192 | Msa1436440:CDS |
| GATCTGCACCATACTTAATT+GGG | 0.441924 | tig0027935:-53587 | Msa1436440:intergenic |
| TTAGTAACATGAACTTGAAC+AGG | 0.445078 | tig0027935:-55878 | Msa1436440:intergenic |
| TTGTTCAAGTAATCTGTTGT+TGG | 0.449557 | tig0027935:-55387 | Msa1436440:intergenic |
| ATCACATTTCCTTCATCGGC+TGG | 0.454793 | tig0027935:+53765 | Msa1436440:CDS |
| TTCCAATTGTAAAATTAGAT+GGG | 0.461356 | tig0027935:+56008 | Msa1436440:CDS |
| TCCCATCACATTTCCTTCAT+CGG | 0.471050 | tig0027935:+53761 | Msa1436440:CDS |
| AAGGAAACAACACCATGAAC+TGG | 0.487041 | tig0027935:-56283 | Msa1436440:intergenic |
| GATTCGAGCTACCGAGGTGG+AGG | 0.488285 | tig0027935:+55458 | Msa1436440:CDS |
| TTACCAGGAATTAGAGACCT+TGG | 0.494991 | tig0027935:+53693 | Msa1436440:CDS |
| CTCGGTAGCTCGAATCGAAA+AGG | 0.508146 | tig0027935:-55451 | Msa1436440:intergenic |
| TTCCTCCATTTCAACACAGA+AGG | 0.508555 | tig0027935:+55527 | Msa1436440:CDS |
| AAGAATTGATAATTGTTACA+TGG | 0.510868 | tig0027935:+55829 | Msa1436440:CDS |
| AACTCATTGTTCAACAAAGA+AGG | 0.513850 | tig0027935:-56302 | Msa1436440:intergenic |
| TTAGGGCTTGAATTATTACC+AGG | 0.514044 | tig0027935:+53678 | Msa1436440:CDS |
| TTCTACGTGTTCATTGAAGC+AGG | 0.514067 | tig0027935:-53196 | Msa1436440:intergenic |
| TCAACAAGGTATCTATCAGT+TGG | 0.515242 | tig0027935:-55317 | Msa1436440:intergenic |
| TATTCATTTCATGCATTAGA+GGG | 0.516937 | tig0027935:+56193 | Msa1436440:CDS |
| GTGGTGTACCCAATTAAGTA+TGG | 0.526549 | tig0027935:+53579 | Msa1436440:CDS |
| ACAAGATTGCCAGCCGATGA+AGG | 0.526613 | tig0027935:-53774 | Msa1436440:intergenic |
| GAAAGTGAGAAACCAGTTCA+TGG | 0.531426 | tig0027935:+56271 | Msa1436440:CDS |
| GATTGGAAAATGAAGAAGAG+TGG | 0.536042 | tig0027935:+53552 | Msa1436440:intron |
| CTTGGACAACACTCAACAGT+CGG | 0.538774 | tig0027935:+55596 | Msa1436440:CDS |
| ATTGATAGGAACAATGTGAT+TGG | 0.546202 | tig0027935:+56058 | Msa1436440:CDS |
| TGGTAATGGCACAAAATGGG+TGG | 0.549729 | tig0027935:+56120 | Msa1436440:CDS |
| TTCCTTCTGTGTTGAAATGG+AGG | 0.550409 | tig0027935:-55529 | Msa1436440:intergenic |
| GGATGGTAATGGCACAAAAT+GGG | 0.551911 | tig0027935:+56117 | Msa1436440:CDS |
| TTCATCGGCTGGCAATCTTG+TGG | 0.566505 | tig0027935:+53776 | Msa1436440:CDS |
| TCCAATTGTAAAATTAGATG+GGG | 0.567825 | tig0027935:+56009 | Msa1436440:CDS |
| AATGAAGAAGAGTGGAAGAG+TGG | 0.571785 | tig0027935:+53560 | Msa1436440:intron |
| GGATTATAATAGTATAGTCA+TGG | 0.575274 | tig0027935:+55850 | Msa1436440:CDS |
| ATTTAGTAACATTGATCAAG+TGG | 0.575859 | tig0027935:+56033 | Msa1436440:CDS |
| GCCGATGAAGGAAATGTGAT+GGG | 0.577733 | tig0027935:-53762 | Msa1436440:intergenic |
| AAAGGCGAAAGACAATTCTC+AGG | 0.579523 | tig0027935:+55626 | Msa1436440:CDS |
| TCAACAGTCGGTGGAGACAA+AGG | 0.584797 | tig0027935:+55608 | Msa1436440:CDS |
| CCAGGAATTAGAGACCTTGG+AGG | 0.587401 | tig0027935:+53696 | Msa1436440:CDS |
| AAGTGACAAGAGAAATGCTA+AGG | 0.588861 | tig0027935:-53145 | Msa1436440:intergenic |
| GGACAAGCTAACATGATCAC+AGG | 0.590351 | tig0027935:+55731 | Msa1436440:CDS |
| AGTATGGTGCAGATCCAACT+GGG | 0.590855 | tig0027935:+53595 | Msa1436440:CDS |
| GCCATTGGAATTGTTCTTAG+GGG | 0.599615 | tig0027935:+55710 | Msa1436440:CDS |
| TGCCGAGAAAATTGCAACAT+CGG | 0.599656 | tig0027935:-55687 | Msa1436440:intergenic |
| TACGTGTTCATTGAAGCAGG+TGG | 0.603710 | tig0027935:-53193 | Msa1436440:intergenic |
| CCAATTGTAAAATTAGATGG+GGG | 0.605323 | tig0027935:+56010 | Msa1436440:CDS |
| TTCGATTCGAGCTACCGAGG+TGG | 0.606373 | tig0027935:+55455 | Msa1436440:CDS |
| AGCCGATGAAGGAAATGTGA+TGG | 0.612995 | tig0027935:-53763 | Msa1436440:intergenic |
| TCCCCTAAGAACAATTCCAA+TGG | 0.613399 | tig0027935:-55711 | Msa1436440:intergenic |
| AAGTTGAATGTGGATGGTAA+TGG | 0.619073 | tig0027935:+56106 | Msa1436440:CDS |
| AATCAATGATAACACCTCCA+AGG | 0.627415 | tig0027935:-53710 | Msa1436440:intergenic |
| AACGGTTGGTAAGTTGAATG+TGG | 0.630673 | tig0027935:+56096 | Msa1436440:CDS |
| GTGTGAAGATGGCTGAGACA+TGG | 0.634929 | tig0027935:-53265 | Msa1436440:intergenic |
| AGATTACTTGAACAAACGAT+AGG | 0.635310 | tig0027935:+55395 | Msa1436440:CDS |
| GAAGGAATTAAAGTTCAAAG+TGG | 0.637402 | tig0027935:+55545 | Msa1436440:CDS |
| GTTGGTAAGTTGAATGTGGA+TGG | 0.638186 | tig0027935:+56100 | Msa1436440:CDS |
| GGTAATGGCACAAAATGGGT+GGG | 0.641219 | tig0027935:+56121 | Msa1436440:CDS |
| GTTGCTATCAAGATCAATTG+CGG | 0.644562 | tig0027935:-55651 | Msa1436440:intergenic |
| TTGATGCATTTAATTCAACA+AGG | 0.652870 | tig0027935:-55331 | Msa1436440:intergenic |
| ATTGTCGATTCTGATTCTAG+CGG | 0.659026 | tig0027935:-55498 | Msa1436440:intergenic |
| CAATGACCAAAGGTAAATGG+AGG | 0.667241 | tig0027935:+55269 | Msa1436440:intron |
| GGACAACACTCAACAGTCGG+TGG | 0.682248 | tig0027935:+55599 | Msa1436440:CDS |
| CGATGAATATTCCTCCACCT+CGG | 0.718566 | tig0027935:-55469 | Msa1436440:intergenic |
| GTATGGTGCAGATCCAACTG+GGG | 0.760947 | tig0027935:+53596 | Msa1436440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGATGATTTTAAT+TGG | + | tig0027935:53350-53369 | Msa1436440:intron | 10.0% |
| !! | CTAATTTATATAACAAATTA+AGG | - | tig0027935:53901-53920 | Msa1436440:intergenic | 10.0% |
| !!! | TTTTGATAATATTTATTAAG+AGG | + | tig0027935:54300-54319 | Msa1436440:intron | 10.0% |
| !!! | ATGAGATTTTAAAAAAATTA+TGG | + | tig0027935:54677-54696 | Msa1436440:intron | 10.0% |
| !! | TCAAAATAATAAATTTGTAT+TGG | + | tig0027935:55015-55034 | Msa1436440:intron | 10.0% |
| !! | AAAAATTGTTAAGCAAAAAA+TGG | + | tig0027935:53236-53255 | Msa1436440:CDS | 15.0% |
| !!! | CATTTTATACAATGAAAAAA+AGG | - | tig0027935:53497-53516 | Msa1436440:intergenic | 15.0% |
| !!! | CATTTGATATTGATAATTTA+GGG | + | tig0027935:53661-53680 | Msa1436440:CDS | 15.0% |
| !!! | AATAAAACATTATTTGGAAT+GGG | - | tig0027935:54265-54284 | Msa1436440:intergenic | 15.0% |
| !! | AAATAAAACATTATTTGGAA+TGG | - | tig0027935:54266-54285 | Msa1436440:intergenic | 15.0% |
| !!! | TCTCTTTTGATTTTTTTTAT+TGG | + | tig0027935:54396-54415 | Msa1436440:intron | 15.0% |
| !!! | TCAAATTTAATTTGTAAACA+TGG | + | tig0027935:54793-54812 | Msa1436440:intron | 15.0% |
| !! | AATAATATGTAAAAGTTAAG+TGG | - | tig0027935:55225-55244 | Msa1436440:intergenic | 15.0% |
| !!! | ATATTATTTTCCTTTTTCCT+AGG | + | tig0027935:53325-53344 | Msa1436440:intron | 20.0% |
| !!! | GCATTTGATATTGATAATTT+AGG | + | tig0027935:53660-53679 | Msa1436440:CDS | 20.0% |
| !!! | TTAACTAAGTATTTGTTTTC+TGG | - | tig0027935:54095-54114 | Msa1436440:intergenic | 20.0% |
| !!! | ATAAAACATTATTTGGAATG+GGG | - | tig0027935:54264-54283 | Msa1436440:intergenic | 20.0% |
| !! | TCGATTCAATAGAATAAAAA+AGG | + | tig0027935:54635-54654 | Msa1436440:intron | 20.0% |
| !!! | AGTTGCAAAATTTTATTGAT+AGG | - | tig0027935:55089-55108 | Msa1436440:intergenic | 20.0% |
| !! | AAGCATATTAAGATGTTAAA+AGG | - | tig0027935:55119-55138 | Msa1436440:intergenic | 20.0% |
| !! | TCATAACATAACAATATTTG+AGG | + | tig0027935:55156-55175 | Msa1436440:intron | 20.0% |
| !! | CATAACATAACAATATTTGA+GGG | + | tig0027935:55157-55176 | Msa1436440:intron | 20.0% |
| !!! | AAGAATTGATAATTGTTACA+TGG | + | tig0027935:55829-55848 | Msa1436440:CDS | 20.0% |
| !!! | TTACTAATGGTTTTTTCTTA+GGG | + | tig0027935:55894-55913 | Msa1436440:CDS | 20.0% |
| !! | ATTGTTAACAATATGTTTAG+TGG | + | tig0027935:55968-55987 | Msa1436440:CDS | 20.0% |
| !! | CAATTGGAACATTATTATTA+GGG | - | tig0027935:55997-56016 | Msa1436440:intergenic | 20.0% |
| !! | ACAATTGGAACATTATTATT+AGG | - | tig0027935:55998-56017 | Msa1436440:intergenic | 20.0% |
| !! | TTCCAATTGTAAAATTAGAT+GGG | + | tig0027935:56008-56027 | Msa1436440:CDS | 20.0% |
| ! | AAAAAAAACTCCTAGGAAAA+AGG | - | tig0027935:53338-53357 | Msa1436440:intergenic | 25.0% |
| ! | AATCATCAAAAAAAACTCCT+AGG | - | tig0027935:53345-53364 | Msa1436440:intergenic | 25.0% |
| !! | CATTTTTCTAACATTGTTTG+AGG | + | tig0027935:53422-53441 | Msa1436440:intron | 25.0% |
| ! | TTAAATGTAGTATATGAGAG+AGG | + | tig0027935:54014-54033 | Msa1436440:intron | 25.0% |
| ! | TAAGAGTTAAAACAAAGAAG+AGG | + | tig0027935:54112-54131 | Msa1436440:intron | 25.0% |
| ! | AAGAGTTAAAACAAAGAAGA+GGG | + | tig0027935:54113-54132 | Msa1436440:intron | 25.0% |
| !! | TTTTCTTGAATGATTCTTGA+AGG | - | tig0027935:54236-54255 | Msa1436440:intergenic | 25.0% |
| !! | TATTCAATGCAAGAACATTT+TGG | - | tig0027935:54424-54443 | Msa1436440:intergenic | 25.0% |
| ! | TTCTATGATGTACATATGTT+AGG | + | tig0027935:54988-55007 | Msa1436440:intron | 25.0% |
| ! | TTGATGCATTTAATTCAACA+AGG | - | tig0027935:55334-55353 | Msa1436440:intergenic | 25.0% |
| ! | AAGAAAACTACTTGATATGA+AGG | - | tig0027935:55579-55598 | Msa1436440:intergenic | 25.0% |
| !! | TTCATATCAAGTAGTTTTCT+TGG | + | tig0027935:55578-55597 | Msa1436440:CDS | 25.0% |
| !! | GAATTTTGTTGAAATTAGCA+GGG | + | tig0027935:55795-55814 | Msa1436440:CDS | 25.0% |
| ! | GGATTATAATAGTATAGTCA+TGG | + | tig0027935:55850-55869 | Msa1436440:CDS | 25.0% |
| !!! | GTTACTAATGGTTTTTTCTT+AGG | + | tig0027935:55893-55912 | Msa1436440:CDS | 25.0% |
| !!! | TACTAATGGTTTTTTCTTAG+GGG | + | tig0027935:55895-55914 | Msa1436440:CDS | 25.0% |
| !!! | ATTGTTTTGAAGTCCATTAA+AGG | + | tig0027935:55926-55945 | Msa1436440:CDS | 25.0% |
| ! | GTTCCAATTGTAAAATTAGA+TGG | + | tig0027935:56007-56026 | Msa1436440:CDS | 25.0% |
| ! | TCCAATTGTAAAATTAGATG+GGG | + | tig0027935:56009-56028 | Msa1436440:CDS | 25.0% |
| ! | ATTTAGTAACATTGATCAAG+TGG | + | tig0027935:56033-56052 | Msa1436440:CDS | 25.0% |
| !!! | TGGTATGATTTTAAGATCAA+CGG | + | tig0027935:56078-56097 | Msa1436440:CDS | 25.0% |
| !!! | GGGTGATTTTTCAAATATTT+TGG | + | tig0027935:56141-56160 | Msa1436440:CDS | 25.0% |
| !!! | ATATTTTGGTGTTTCCTAAT+AGG | + | tig0027935:56155-56174 | Msa1436440:CDS | 25.0% |
| ! | TGAAAATGACTAATCCTATT+AGG | - | tig0027935:56172-56191 | Msa1436440:intergenic | 25.0% |
| ! | TATTCATTTCATGCATTAGA+GGG | + | tig0027935:56193-56212 | Msa1436440:CDS | 25.0% |
| !!! | ACCTTTTTTTTGTGTGAAGA+TGG | - | tig0027935:53279-53298 | Msa1436440:intergenic | 30.0% |
| !!! | GGTGTTATCATTGATTTTCA+AGG | + | tig0027935:53717-53736 | Msa1436440:CDS | 30.0% |
| !!! | GTTATCATTGATTTTCAAGG+TGG | + | tig0027935:53720-53739 | Msa1436440:CDS | 30.0% |
| ATCAATCAAAGTAGTAAAGG+AGG | - | tig0027935:53837-53856 | Msa1436440:intergenic | 30.0% | |
| TGCATCAATCAAAGTAGTAA+AGG | - | tig0027935:53840-53859 | Msa1436440:intergenic | 30.0% | |
| ! | AGAACTCGAAAAAAAGTACA+AGG | + | tig0027935:54056-54075 | Msa1436440:intron | 30.0% |
| ! | GAACTCGAAAAAAAGTACAA+GGG | + | tig0027935:54057-54076 | Msa1436440:intron | 30.0% |
| !! | CTAAGTATTTGTTTTCTGGT+GGG | - | tig0027935:54091-54110 | Msa1436440:intergenic | 30.0% |
| !! | ACTAAGTATTTGTTTTCTGG+TGG | - | tig0027935:54092-54111 | Msa1436440:intergenic | 30.0% |
| TGGAGTTATTAAGAAATTGC+AGG | - | tig0027935:54489-54508 | Msa1436440:intergenic | 30.0% | |
| TTGAGTGAGACTTAAATTGA+TGG | - | tig0027935:54509-54528 | Msa1436440:intergenic | 30.0% | |
| TCTCACCAAACAATACTAAA+GGG | + | tig0027935:54551-54570 | Msa1436440:intron | 30.0% | |
| !! | GATTTGTTCATTTTCCAACA+AGG | - | tig0027935:54613-54632 | Msa1436440:intergenic | 30.0% |
| !! | TCACGTAGATATTTTTGAAG+AGG | + | tig0027935:54857-54876 | Msa1436440:intron | 30.0% |
| ! | ACTTTTACATCAATGACCAA+AGG | + | tig0027935:55259-55278 | Msa1436440:intron | 30.0% |
| AAATGTTTCAGAAGCTCTTA+AGG | - | tig0027935:55297-55316 | Msa1436440:intergenic | 30.0% | |
| TTGTTCAAGTAATCTGTTGT+TGG | - | tig0027935:55390-55409 | Msa1436440:intergenic | 30.0% | |
| AGATTACTTGAACAAACGAT+AGG | + | tig0027935:55395-55414 | Msa1436440:CDS | 30.0% | |
| TAATTCCTTCTGTGTTGAAA+TGG | - | tig0027935:55535-55554 | Msa1436440:intergenic | 30.0% | |
| GAAGGAATTAAAGTTCAAAG+TGG | + | tig0027935:55545-55564 | Msa1436440:CDS | 30.0% | |
| TACTTGATATGAAGGTTTCA+TGG | - | tig0027935:55571-55590 | Msa1436440:intergenic | 30.0% | |
| CATTGTTATAACAAAGCAAC+AGG | + | tig0027935:55758-55777 | Msa1436440:CDS | 30.0% | |
| ! | TATAACAAAGCAACAGGTTT+TGG | + | tig0027935:55764-55783 | Msa1436440:CDS | 30.0% |
| ! | GGAATTTTGTTGAAATTAGC+AGG | + | tig0027935:55794-55813 | Msa1436440:CDS | 30.0% |
| TTAGTAACATGAACTTGAAC+AGG | - | tig0027935:55881-55900 | Msa1436440:intergenic | 30.0% | |
| ! | GTTCAAGTTCATGTTACTAA+TGG | + | tig0027935:55881-55900 | Msa1436440:CDS | 30.0% |
| TCCATTAAAGGCAAAGTTTA+TGG | + | tig0027935:55938-55957 | Msa1436440:CDS | 30.0% | |
| ACCATAAACTTTGCCTTTAA+TGG | - | tig0027935:55942-55961 | Msa1436440:intergenic | 30.0% | |
| CCAATTGTAAAATTAGATGG+GGG | + | tig0027935:56010-56029 | Msa1436440:CDS | 30.0% | |
| ATTGATAGGAACAATGTGAT+TGG | + | tig0027935:56058-56077 | Msa1436440:CDS | 30.0% | |
| !!! | ATGATTTTAAGATCAACGGT+TGG | + | tig0027935:56082-56101 | Msa1436440:CDS | 30.0% |
| GTATTCATTTCATGCATTAG+AGG | + | tig0027935:56192-56211 | Msa1436440:CDS | 30.0% | |
| AAGTGACAAGAGAAATGCTA+AGG | - | tig0027935:53148-53167 | None:intergenic | 35.0% | |
| !!! | AGCATTTCTCTTGTCACTTT+TGG | + | tig0027935:53149-53168 | Msa1436440:CDS | 35.0% |
| GCCATCTTCACACAAAAAAA+AGG | + | tig0027935:53275-53294 | Msa1436440:CDS | 35.0% | |
| GATTGGAAAATGAAGAAGAG+TGG | + | tig0027935:53552-53571 | Msa1436440:intron | 35.0% | |
| GATCTGCACCATACTTAATT+GGG | - | tig0027935:53590-53609 | Msa1436440:intergenic | 35.0% | |
| AGCTTCTACAGCTTTCATAA+TGG | - | tig0027935:53640-53659 | Msa1436440:intergenic | 35.0% | |
| TTAGGGCTTGAATTATTACC+AGG | + | tig0027935:53678-53697 | Msa1436440:CDS | 35.0% | |
| AATCAATGATAACACCTCCA+AGG | - | tig0027935:53713-53732 | Msa1436440:intergenic | 35.0% | |
| CAAAGTAGTAAAGGAGGAAA+AGG | - | tig0027935:53831-53850 | Msa1436440:intergenic | 35.0% | |
| !!! | AACCTCAATTTTTTCCTAGC+TGG | + | tig0027935:54163-54182 | Msa1436440:intron | 35.0% |
| TTCCAGCTAGGAAAAAATTG+AGG | - | tig0027935:54168-54187 | Msa1436440:intergenic | 35.0% | |
| ! | AGTGGGTTCAAAATTGTTAG+AGG | - | tig0027935:54532-54551 | Msa1436440:intergenic | 35.0% |
| ! | TAGTATTGTTTGGTGAGAGT+GGG | - | tig0027935:54549-54568 | Msa1436440:intergenic | 35.0% |
| ! | TTAGTATTGTTTGGTGAGAG+TGG | - | tig0027935:54550-54569 | Msa1436440:intergenic | 35.0% |
| CTCTCACCAAACAATACTAA+AGG | + | tig0027935:54550-54569 | Msa1436440:intron | 35.0% | |
| CTCACCAAACAATACTAAAG+GGG | + | tig0027935:54552-54571 | Msa1436440:intron | 35.0% | |
| TCACCAAACAATACTAAAGG+GGG | + | tig0027935:54553-54572 | Msa1436440:intron | 35.0% | |
| ! | TTCATTTTCCAACAAGGCTT+TGG | - | tig0027935:54607-54626 | Msa1436440:intergenic | 35.0% |
| GCACAAACCAGACAAAATAA+AGG | + | tig0027935:54747-54766 | Msa1436440:intron | 35.0% | |
| !!! | CAGATCTCCTTTATTTTGTC+TGG | - | tig0027935:54757-54776 | Msa1436440:intergenic | 35.0% |
| CATCAATGACCAAAGGTAAA+TGG | + | tig0027935:55266-55285 | Msa1436440:intron | 35.0% | |
| ! | TCAACAAGGTATCTATCAGT+TGG | - | tig0027935:55320-55339 | Msa1436440:intergenic | 35.0% |
| ! | TGCTTTTGTTGCATTTTGGA+GGG | - | tig0027935:55366-55385 | Msa1436440:intergenic | 35.0% |
| ! | ATGCTTTTGTTGCATTTTGG+AGG | - | tig0027935:55367-55386 | Msa1436440:intergenic | 35.0% |
| ! | TGGATGCTTTTGTTGCATTT+TGG | - | tig0027935:55370-55389 | Msa1436440:intergenic | 35.0% |
| !! | ATTGTCGATTCTGATTCTAG+CGG | - | tig0027935:55501-55520 | Msa1436440:intergenic | 35.0% |
| GTTGCTATCAAGATCAATTG+CGG | - | tig0027935:55654-55673 | Msa1436440:intergenic | 35.0% | |
| ! | TACCGATGTTGCAATTTTCT+CGG | + | tig0027935:55685-55704 | Msa1436440:CDS | 35.0% |
| AGCCATTGGAATTGTTCTTA+GGG | + | tig0027935:55709-55728 | Msa1436440:CDS | 35.0% | |
| ! | CCCCCATCTAATTTTACAAT+TGG | - | tig0027935:56013-56032 | Msa1436440:intergenic | 35.0% |
| TTGATCAAGTGGTGATTGAT+AGG | + | tig0027935:56044-56063 | Msa1436440:CDS | 35.0% | |
| AAGTTGAATGTGGATGGTAA+TGG | + | tig0027935:56106-56125 | Msa1436440:CDS | 35.0% | |
| ACTGAATGTGCAACAAACTT+TGG | - | tig0027935:56220-56239 | Msa1436440:intergenic | 35.0% | |
| TTCTACGTGTTCATTGAAGC+AGG | - | tig0027935:53199-53218 | Msa1436440:intergenic | 40.0% | |
| ACAATCTCATTCTCTCTGTG+TGG | + | tig0027935:53524-53543 | Msa1436440:intron | 40.0% | |
| ! | TCATTCTCTCTGTGTGGTTT+TGG | + | tig0027935:53530-53549 | Msa1436440:intron | 40.0% |
| AATGAAGAAGAGTGGAAGAG+TGG | + | tig0027935:53560-53579 | Msa1436440:intron | 40.0% | |
| GTGGTGTACCCAATTAAGTA+TGG | + | tig0027935:53579-53598 | Msa1436440:CDS | 40.0% | |
| GGATCTGCACCATACTTAAT+TGG | - | tig0027935:53591-53610 | Msa1436440:intergenic | 40.0% | |
| TTACCAGGAATTAGAGACCT+TGG | + | tig0027935:53693-53712 | Msa1436440:CDS | 40.0% | |
| TCCCATCACATTTCCTTCAT+CGG | + | tig0027935:53761-53780 | Msa1436440:CDS | 40.0% | |
| !! | CCTCGAAGAGGTTGATATTA+CGG | + | tig0027935:54192-54211 | Msa1436440:intron | 40.0% |
| TAGCCCCCTTTAGTATTGTT+TGG | - | tig0027935:54559-54578 | Msa1436440:intergenic | 40.0% | |
| !! | ACAAGGCTTTGGATTTCTCA+AGG | - | tig0027935:54596-54615 | Msa1436440:intergenic | 40.0% |
| ! | TGAGAAATCCAAAGCCTTGT+TGG | + | tig0027935:54596-54615 | Msa1436440:intron | 40.0% |
| ! | TTCTCTGTTTTGCACTGCTA+AGG | - | tig0027935:54929-54948 | Msa1436440:intergenic | 40.0% |
| CAATGACCAAAGGTAAATGG+AGG | + | tig0027935:55269-55288 | Msa1436440:intron | 40.0% | |
| AAGGTTCCTCCATTTACCTT+TGG | - | tig0027935:55278-55297 | Msa1436440:intergenic | 40.0% | |
| !! | TGTTGCATTTTGGAGGGTTT+TGG | - | tig0027935:55360-55379 | Msa1436440:intergenic | 40.0% |
| TTCCTCCATTTCAACACAGA+AGG | + | tig0027935:55527-55546 | Msa1436440:CDS | 40.0% | |
| TTCCTTCTGTGTTGAAATGG+AGG | - | tig0027935:55532-55551 | Msa1436440:intergenic | 40.0% | |
| AAAGGCGAAAGACAATTCTC+AGG | + | tig0027935:55626-55645 | Msa1436440:CDS | 40.0% | |
| TGCCGAGAAAATTGCAACAT+CGG | - | tig0027935:55690-55709 | Msa1436440:intergenic | 40.0% | |
| CAGCCATTGGAATTGTTCTT+AGG | + | tig0027935:55708-55727 | Msa1436440:CDS | 40.0% | |
| GCCATTGGAATTGTTCTTAG+GGG | + | tig0027935:55710-55729 | Msa1436440:CDS | 40.0% | |
| TCCCCTAAGAACAATTCCAA+TGG | - | tig0027935:55714-55733 | Msa1436440:intergenic | 40.0% | |
| !! | AACAAAGCAACAGGTTTTGG+TGG | + | tig0027935:55767-55786 | Msa1436440:CDS | 40.0% |
| !! | AACGGTTGGTAAGTTGAATG+TGG | + | tig0027935:56096-56115 | Msa1436440:CDS | 40.0% |
| ! | GTTGGTAAGTTGAATGTGGA+TGG | + | tig0027935:56100-56119 | Msa1436440:CDS | 40.0% |
| !! | TGGATGGTAATGGCACAAAA+TGG | + | tig0027935:56116-56135 | Msa1436440:CDS | 40.0% |
| !! | GGATGGTAATGGCACAAAAT+GGG | + | tig0027935:56117-56136 | Msa1436440:CDS | 40.0% |
| GAAAGTGAGAAACCAGTTCA+TGG | + | tig0027935:56271-56290 | Msa1436440:CDS | 40.0% | |
| AAGGAAACAACACCATGAAC+TGG | - | tig0027935:56286-56305 | Msa1436440:intergenic | 40.0% | |
| TACGTGTTCATTGAAGCAGG+TGG | - | tig0027935:53196-53215 | Msa1436440:intergenic | 45.0% | |
| !!! | CTCTCTGTGTGGTTTTGGAT+TGG | + | tig0027935:53535-53554 | Msa1436440:intron | 45.0% |
| AAGTATGGTGCAGATCCAAC+TGG | + | tig0027935:53594-53613 | Msa1436440:CDS | 45.0% | |
| AGTATGGTGCAGATCCAACT+GGG | + | tig0027935:53595-53614 | Msa1436440:CDS | 45.0% | |
| ! | CTGCTTTCTTTTTCCCCAGT+TGG | - | tig0027935:53612-53631 | Msa1436440:intergenic | 45.0% |
| GCCGATGAAGGAAATGTGAT+GGG | - | tig0027935:53765-53784 | Msa1436440:intergenic | 45.0% | |
| AGCCGATGAAGGAAATGTGA+TGG | - | tig0027935:53766-53785 | Msa1436440:intergenic | 45.0% | |
| ATCACATTTCCTTCATCGGC+TGG | + | tig0027935:53765-53784 | Msa1436440:CDS | 45.0% | |
| CCGTAATATCAACCTCTTCG+AGG | - | tig0027935:54195-54214 | Msa1436440:intergenic | 45.0% | |
| GTGTTTCCTAGTACGCTTCT+AGG | - | tig0027935:54463-54482 | Msa1436440:intergenic | 45.0% | |
| CGATGAATATTCCTCCACCT+CGG | - | tig0027935:55472-55491 | Msa1436440:intergenic | 45.0% | |
| CTTGGACAACACTCAACAGT+CGG | + | tig0027935:55596-55615 | Msa1436440:CDS | 45.0% | |
| GGACAAGCTAACATGATCAC+AGG | + | tig0027935:55731-55750 | Msa1436440:CDS | 45.0% | |
| !! | GCAACAGGTTTTGGTGGAAT+TGG | + | tig0027935:55773-55792 | Msa1436440:CDS | 45.0% |
| !! | TGGTAATGGCACAAAATGGG+TGG | + | tig0027935:56120-56139 | Msa1436440:CDS | 45.0% |
| ! | GGTAATGGCACAAAATGGGT+GGG | + | tig0027935:56121-56140 | Msa1436440:CDS | 45.0% |
| !! | AATTTAAATAAAACATTATT+TGG | - | tig0027935:54271-54290 | Msa1436440:intergenic | 5.0% |
| !!! | ATTTTTTTTTTTTTTGAATA+AGG | + | tig0027935:54880-54899 | Msa1436440:intron | 5.0% |
| GTGTGAAGATGGCTGAGACA+TGG | - | tig0027935:53268-53287 | Msa1436440:intergenic | 50.0% | |
| GTATGGTGCAGATCCAACTG+GGG | + | tig0027935:53596-53615 | Msa1436440:CDS | 50.0% | |
| CCTCCAAGGTCTCTAATTCC+TGG | - | tig0027935:53699-53718 | Msa1436440:intergenic | 50.0% | |
| CCAGGAATTAGAGACCTTGG+AGG | + | tig0027935:53696-53715 | Msa1436440:CDS | 50.0% | |
| ACAAGATTGCCAGCCGATGA+AGG | - | tig0027935:53777-53796 | Msa1436440:intergenic | 50.0% | |
| ! | TTCATCGGCTGGCAATCTTG+TGG | + | tig0027935:53776-53795 | Msa1436440:CDS | 50.0% |
| !! | CTTCGAGGTGTTTTCCAGCT+AGG | - | tig0027935:54180-54199 | Msa1436440:intergenic | 50.0% |
| AGCTGGAAAACACCTCGAAG+AGG | + | tig0027935:54180-54199 | Msa1436440:intron | 50.0% | |
| CCTAGTACGCTTCTAGGTAC+AGG | - | tig0027935:54457-54476 | Msa1436440:intergenic | 50.0% | |
| ! | CCTGTACCTAGAAGCGTACT+AGG | + | tig0027935:54454-54473 | Msa1436440:intron | 50.0% |
| CTCGGTAGCTCGAATCGAAA+AGG | - | tig0027935:55454-55473 | Msa1436440:intergenic | 50.0% | |
| !! | CTTTTCGATTCGAGCTACCG+AGG | + | tig0027935:55452-55471 | Msa1436440:CDS | 50.0% |
| TCAACAGTCGGTGGAGACAA+AGG | + | tig0027935:55608-55627 | Msa1436440:CDS | 50.0% | |
| ! | GCAATTTTCTCGGCAGCCAT+TGG | + | tig0027935:55695-55714 | Msa1436440:CDS | 50.0% |
| GCTTCTAGGTACAGGCTCAC+TGG | - | tig0027935:54449-54468 | Msa1436440:intergenic | 55.0% | |
| ! | TTCGATTCGAGCTACCGAGG+TGG | + | tig0027935:55455-55474 | Msa1436440:CDS | 55.0% |
| GGACAACACTCAACAGTCGG+TGG | + | tig0027935:55599-55618 | Msa1436440:CDS | 55.0% | |
| GATTCGAGCTACCGAGGTGG+AGG | + | tig0027935:55458-55477 | Msa1436440:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027935 | gene | 53091 | 56321 | 53091 | ID=Msa1436440;Name=Msa1436440 |
| tig0027935 | mRNA | 53091 | 56321 | 53091 | ID=Msa1436440-mRNA-1;Parent=Msa1436440;Name=Msa1436440-mRNA-1;_AED=0.25;_eAED=0.25;_QI=32|1|0.66|1|0.5|0.33|3|0|481 |
| tig0027935 | exon | 53091 | 53296 | 53091 | ID=Msa1436440-mRNA-1:exon:10228;Parent=Msa1436440-mRNA-1 |
| tig0027935 | exon | 53567 | 53797 | 53567 | ID=Msa1436440-mRNA-1:exon:10229;Parent=Msa1436440-mRNA-1 |
| tig0027935 | exon | 55281 | 56321 | 55281 | ID=Msa1436440-mRNA-1:exon:10230;Parent=Msa1436440-mRNA-1 |
| tig0027935 | five_prime_UTR | 53091 | 53122 | 53091 | ID=Msa1436440-mRNA-1:five_prime_utr;Parent=Msa1436440-mRNA-1 |
| tig0027935 | CDS | 53123 | 53296 | 53123 | ID=Msa1436440-mRNA-1:cds;Parent=Msa1436440-mRNA-1 |
| tig0027935 | CDS | 53567 | 53797 | 53567 | ID=Msa1436440-mRNA-1:cds;Parent=Msa1436440-mRNA-1 |
| tig0027935 | CDS | 55281 | 56321 | 55281 | ID=Msa1436440-mRNA-1:cds;Parent=Msa1436440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
