Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243700 | XP_003594883.2 | 90.428 | 491 | 37 | 1 | 1 | 481 | 1 | 491 | 0.0 | 866 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243700 | sp|O49432|QRT3_ARATH | 49.588 | 486 | 216 | 8 | 6 | 481 | 13 | 479 | 2.33e-150 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243700 | A0A396JAJ4 | 90.428 | 491 | 37 | 1 | 1 | 481 | 1 | 491 | 0.0 | 866 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0161200 | Msa0243700 | 0.804842 | 1.779312e-49 | -8.615850e-47 |
| Msa0243700 | Msa0282230 | 0.881843 | 1.712949e-70 | -8.615850e-47 |
| Msa0243700 | Msa0413930 | 0.822831 | 1.919566e-53 | -8.615850e-47 |
| Msa0243700 | Msa1018790 | 0.804122 | 2.513808e-49 | -8.615850e-47 |
| Msa0243700 | Msa1340670 | 0.940235 | 3.301591e-100 | -8.615850e-47 |
| Msa0243700 | Msa1436440 | 0.834834 | 2.383749e-56 | -8.615850e-47 |
| Msa0243700 | Msa1462440 | 0.928885 | 1.531759e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243700 | MtrunA17_Chr2g0297001 | 90.428 | 491 | 37 | 1 | 1 | 481 | 1 | 491 | 0.0 | 866 |
| Msa0243700 | MtrunA17_Chr4g0052711 | 68.696 | 460 | 139 | 3 | 25 | 481 | 23 | 480 | 0.0 | 629 |
| Msa0243700 | MtrunA17_Chr2g0296981 | 52.542 | 413 | 178 | 7 | 62 | 469 | 82 | 481 | 1.39e-140 | 413 |
| Msa0243700 | MtrunA17_Chr6g0455291 | 52.998 | 417 | 173 | 7 | 69 | 481 | 93 | 490 | 1.06e-133 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0243700 | AT4G20040.1 | 64.085 | 426 | 146 | 5 | 58 | 481 | 63 | 483 | 0.0 | 553 |
| Msa0243700 | AT4G20050.5 | 49.588 | 486 | 216 | 8 | 6 | 481 | 38 | 504 | 1.80e-151 | 441 |
| Msa0243700 | AT4G20050.7 | 49.588 | 486 | 216 | 8 | 6 | 481 | 13 | 479 | 2.37e-151 | 440 |
| Msa0243700 | AT4G20050.6 | 49.588 | 486 | 216 | 8 | 6 | 481 | 13 | 479 | 2.37e-151 | 440 |
| Msa0243700 | AT4G20050.2 | 49.588 | 486 | 216 | 8 | 6 | 481 | 13 | 479 | 2.37e-151 | 440 |
| Msa0243700 | AT4G20050.1 | 49.588 | 486 | 216 | 8 | 6 | 481 | 13 | 479 | 2.37e-151 | 440 |
| Msa0243700 | AT4G20050.4 | 54.250 | 400 | 159 | 7 | 87 | 481 | 1 | 381 | 1.53e-137 | 401 |
| Msa0243700 | AT4G20050.3 | 54.250 | 400 | 159 | 7 | 87 | 481 | 1 | 381 | 1.53e-137 | 401 |
Find 90 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGATATTGATAATTT+AGG | 0.107857 | 2_2:+21014325 | Msa0243700:CDS |
| ACAATTGGAACATTATTATT+AGG | 0.129299 | 2_2:-21016944 | None:intergenic |
| TCAATTAAAGGGAAAGTTTA+TGG | 0.147921 | 2_2:+21016887 | Msa0243700:CDS |
| GGATCTGCACCATACTTAAT+TGG | 0.153680 | 2_2:-21014253 | None:intergenic |
| AGCATTTCTCTTGTCACTTT+TGG | 0.197047 | 2_2:+21013814 | Msa0243700:CDS |
| CATTTGATATTGATAATTTA+GGG | 0.251344 | 2_2:+21014326 | Msa0243700:CDS |
| GTTCCAATTGTGAAATTAGA+TGG | 0.269638 | 2_2:+21016956 | Msa0243700:CDS |
| CATCAATGACCAAAGGTAAA+TGG | 0.278889 | 2_2:+21016215 | Msa0243700:intron |
| CAATTGGAACATTATTATTA+GGG | 0.285274 | 2_2:-21016943 | None:intergenic |
| TATAACAAAGCAACAGGTTT+TGG | 0.286379 | 2_2:+21016713 | Msa0243700:CDS |
| ATTGTTAACAATATGTTTAG+TGG | 0.301676 | 2_2:+21016917 | Msa0243700:CDS |
| TGAAAATGACTAATCCTATT+AGG | 0.302520 | 2_2:-21017118 | None:intergenic |
| CAGCCATAGGAATTGTTGTT+AGG | 0.306110 | 2_2:+21016657 | Msa0243700:CDS |
| TGGATGGTAATGGCACAAAA+TGG | 0.367127 | 2_2:+21017065 | Msa0243700:CDS |
| AAATGTTTCAGAAGCTCTTA+AGG | 0.373297 | 2_2:-21016243 | None:intergenic |
| TACTTGATATGAAGGTTTCA+TGG | 0.388165 | 2_2:-21016517 | None:intergenic |
| CCTCCAAGGTCTCTAATTCC+TGG | 0.397675 | 2_2:-21014361 | None:intergenic |
| CATTGTTATAACAAAGCAAC+AGG | 0.404226 | 2_2:+21016707 | Msa0243700:CDS |
| TAATTCCTTCGGTGGTGAAA+TGG | 0.411730 | 2_2:-21016481 | None:intergenic |
| ACTTTGAACTTTAATTCCTT+CGG | 0.420815 | 2_2:-21016492 | None:intergenic |
| AGCTTCTACAGCTTTCATAA+TGG | 0.424025 | 2_2:-21014302 | None:intergenic |
| TTCGTAACATGAACTTGAAC+AGG | 0.426663 | 2_2:-21016827 | None:intergenic |
| AAGTATGGTGCAGATCCAAC+TGG | 0.430294 | 2_2:+21014259 | Msa0243700:CDS |
| TTGTTCAAGTAATCTGTTGT+TGG | 0.430783 | 2_2:-21016336 | None:intergenic |
| AATTCATTGTTCAACAAAGA+AGG | 0.431005 | 2_2:-21017251 | None:intergenic |
| ACTGAATGTGCAACAAACTT+TGG | 0.434126 | 2_2:-21017166 | None:intergenic |
| AAGAAAACTACTTGATATGA+AGG | 0.434177 | 2_2:-21016525 | None:intergenic |
| ATATTCATTTCATGCATTAG+AGG | 0.439787 | 2_2:+21017141 | Msa0243700:CDS |
| GATCTGCACCATACTTAATT+GGG | 0.441924 | 2_2:-21014252 | None:intergenic |
| ATCACATTTCCTTCATCGGC+TGG | 0.454793 | 2_2:+21014430 | Msa0243700:CDS |
| AGATTACTTGAACAAACAAT+AGG | 0.463517 | 2_2:+21016344 | Msa0243700:CDS |
| TCCCATCACATTTCCTTCAT+CGG | 0.471050 | 2_2:+21014426 | Msa0243700:CDS |
| AGCCATAGGAATTGTTGTTA+GGG | 0.472547 | 2_2:+21016658 | Msa0243700:CDS |
| GAAAGTGAGAAACCAGTTCA+TGG | 0.473042 | 2_2:+21017220 | Msa0243700:CDS |
| TTCCAATTGTGAAATTAGAT+GGG | 0.473930 | 2_2:+21016957 | Msa0243700:CDS |
| AAGGAAACAACCCCATGAAC+TGG | 0.475950 | 2_2:-21017232 | None:intergenic |
| TTACCAGGAATTAGAGACCT+TGG | 0.494991 | 2_2:+21014358 | Msa0243700:CDS |
| TCCCCTAACAACAATTCCTA+TGG | 0.501817 | 2_2:-21016660 | None:intergenic |
| TATTCATTTCATGCATTAGA+GGG | 0.507592 | 2_2:+21017142 | Msa0243700:CDS |
| AAGAATTGATAATTGTTACA+TGG | 0.510868 | 2_2:+21016778 | Msa0243700:CDS |
| GTCAAATAATGTTGTAGTTG+TGG | 0.512201 | 2_2:+21017198 | Msa0243700:CDS |
| TTAGGGCTTGAATTATTACC+AGG | 0.514044 | 2_2:+21014343 | Msa0243700:CDS |
| TTCTACGTGTTCATTGAAGC+AGG | 0.514067 | 2_2:-21013861 | None:intergenic |
| TTCCTCCATTTCACCACCGA+AGG | 0.521417 | 2_2:+21016476 | Msa0243700:CDS |
| TCAACAAGGTGTCTATCAGT+TGG | 0.524915 | 2_2:-21016266 | None:intergenic |
| GTGGTGTACCCAATTAAGTA+TGG | 0.526549 | 2_2:+21014244 | Msa0243700:CDS |
| ACAAGATTGCCAGCCGATGA+AGG | 0.526613 | 2_2:-21014439 | None:intergenic |
| CTTGGACAACACTCAACAGT+CGG | 0.527472 | 2_2:+21016545 | Msa0243700:CDS |
| GTTCAAGTTCATGTTACGAA+TGG | 0.528355 | 2_2:+21016830 | Msa0243700:CDS |
| GATTGGAAAATGAAGAAGAG+TGG | 0.536042 | 2_2:+21014217 | Msa0243700:intron |
| GATTCAAGTTACCGAGGTGG+AGG | 0.539152 | 2_2:+21016407 | Msa0243700:CDS |
| TTGAACTTTAATTCCTTCGG+TGG | 0.542054 | 2_2:-21016489 | None:intergenic |
| ATTGATATGAACAATGTGAT+TGG | 0.543536 | 2_2:+21017007 | Msa0243700:CDS |
| TGGTAATGGCACAAAATGGG+TGG | 0.549729 | 2_2:+21017069 | Msa0243700:CDS |
| GGATGGTAATGGCACAAAAT+GGG | 0.551911 | 2_2:+21017066 | Msa0243700:CDS |
| GGATTATAATTCTATAGTCA+TGG | 0.563335 | 2_2:+21016799 | Msa0243700:CDS |
| AAAGTGAGAAACCAGTTCAT+GGG | 0.566325 | 2_2:+21017221 | Msa0243700:CDS |
| TTCATCGGCTGGCAATCTTG+TGG | 0.566505 | 2_2:+21014441 | Msa0243700:CDS |
| TCAACAGTCGGCGGAGACAA+AGG | 0.569193 | 2_2:+21016557 | Msa0243700:CDS |
| AATGAAGAAGAGTGGAAGAG+TGG | 0.571785 | 2_2:+21014225 | Msa0243700:intron |
| TTCCTTCGGTGGTGAAATGG+AGG | 0.577526 | 2_2:-21016478 | None:intergenic |
| GCCGATGAAGGAAATGTGAT+GGG | 0.577733 | 2_2:-21014427 | None:intergenic |
| CCAGGAATTAGAGACCTTGG+AGG | 0.587401 | 2_2:+21014361 | Msa0243700:CDS |
| AAGTGACAAGAGAAATGCTA+AGG | 0.588861 | 2_2:-21013810 | None:intergenic |
| GGACAAGCTAACATGATCAC+AGG | 0.590351 | 2_2:+21016680 | Msa0243700:CDS |
| AGTATGGTGCAGATCCAACT+GGG | 0.590855 | 2_2:+21014260 | Msa0243700:CDS |
| ATTTAGTGACATTGATCAAG+TGG | 0.593403 | 2_2:+21016982 | Msa0243700:CDS |
| TCCAATTGTGAAATTAGATG+GGG | 0.603106 | 2_2:+21016958 | Msa0243700:CDS |
| TACGTGTTCATTGAAGCAGG+TGG | 0.603710 | 2_2:-21013858 | None:intergenic |
| CTCGGTAACTTGAATCGAAG+AGG | 0.611266 | 2_2:-21016400 | None:intergenic |
| AGCCGATGAAGGAAATGTGA+TGG | 0.612995 | 2_2:-21014428 | None:intergenic |
| AAGTTGAATGTGGATGGTAA+TGG | 0.619073 | 2_2:+21017055 | Msa0243700:CDS |
| AATCAATGATAACACCTCCA+AGG | 0.627415 | 2_2:-21014375 | None:intergenic |
| AACCGTTGGGAAGTTGAATG+TGG | 0.628722 | 2_2:+21017045 | Msa0243700:CDS |
| TGCTGAGAAAATTGCAACAT+CGG | 0.630023 | 2_2:-21016636 | None:intergenic |
| GTGTGAAGATGGCTGAGACA+TGG | 0.634929 | 2_2:-21013930 | None:intergenic |
| TTCGATTCAAGTTACCGAGG+TGG | 0.636613 | 2_2:+21016404 | Msa0243700:CDS |
| GCCATAGGAATTGTTGTTAG+GGG | 0.637301 | 2_2:+21016659 | Msa0243700:CDS |
| CCAATTGTGAAATTAGATGG+GGG | 0.638303 | 2_2:+21016959 | Msa0243700:CDS |
| GGTAATGGCACAAAATGGGT+GGG | 0.641219 | 2_2:+21017070 | Msa0243700:CDS |
| ATCCACATTCAACTTCCCAA+CGG | 0.649744 | 2_2:-21017047 | None:intergenic |
| TTGATGCATTTAATTCAACA+AGG | 0.650431 | 2_2:-21016280 | None:intergenic |
| AAGTGAGAAACCAGTTCATG+GGG | 0.654495 | 2_2:+21017222 | Msa0243700:CDS |
| GTTGGGAAGTTGAATGTGGA+TGG | 0.656072 | 2_2:+21017049 | Msa0243700:CDS |
| GAAGGAATTAAAGTTCAAAG+TGG | 0.662811 | 2_2:+21016494 | Msa0243700:CDS |
| CAATGACCAAAGGTAAATGG+AGG | 0.667241 | 2_2:+21016218 | Msa0243700:intron |
| CTCTTCGATTCAAGTTACCG+AGG | 0.668555 | 2_2:+21016401 | Msa0243700:CDS |
| GGACAACACTCAACAGTCGG+CGG | 0.701448 | 2_2:+21016548 | Msa0243700:CDS |
| CGATGAATATTCCTCCACCT+CGG | 0.718566 | 2_2:-21016418 | None:intergenic |
| GTATGGTGCAGATCCAACTG+GGG | 0.760947 | 2_2:+21014261 | Msa0243700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTGATGATTTTAAT+TGG | + | chr2_2:21014015-21014034 | Msa0243700:intron | 10.0% |
| !! | CTAATTTATATAACAAATTA+AGG | - | chr2_2:21014566-21014585 | None:intergenic | 10.0% |
| !!! | TTTTGATAATATTTATTAAG+AGG | + | chr2_2:21014956-21014975 | Msa0243700:intron | 10.0% |
| !! | AGAGAAAAATATTTATTTAT+AGG | - | chr2_2:21015054-21015073 | None:intergenic | 10.0% |
| !!! | ATGAGATTTTAAAAAAATTA+TGG | + | chr2_2:21015350-21015369 | Msa0243700:intron | 10.0% |
| !! | TCAAAATAATAAATTTGTAT+TGG | + | chr2_2:21015676-21015695 | Msa0243700:intron | 10.0% |
| !! | AAAAATTGTTAAGCAAAAAA+TGG | + | chr2_2:21013901-21013920 | Msa0243700:CDS | 15.0% |
| !!! | CATTTTATACAATGAAAAAA+AGG | - | chr2_2:21014162-21014181 | None:intergenic | 15.0% |
| !!! | CATTTGATATTGATAATTTA+GGG | + | chr2_2:21014326-21014345 | Msa0243700:CDS | 15.0% |
| !!! | AATAAAACATTATTTGGAAT+GGG | - | chr2_2:21014921-21014940 | None:intergenic | 15.0% |
| !! | AAATAAAACATTATTTGGAA+TGG | - | chr2_2:21014922-21014941 | None:intergenic | 15.0% |
| !!! | TCTCTTTTGATTTTTTTTAT+TGG | + | chr2_2:21015069-21015088 | Msa0243700:intron | 15.0% |
| !!! | TCAAATTTAATTTGTAAACA+TGG | + | chr2_2:21015466-21015485 | Msa0243700:intron | 15.0% |
| !!! | GGAATTTTTTTTTTTGAATA+AGG | + | chr2_2:21015541-21015560 | Msa0243700:intron | 15.0% |
| !! | TGTGAATTTAATGATAAATA+AGG | - | chr2_2:21015893-21015912 | None:intergenic | 15.0% |
| !! | AAATCATAACATAACAATAT+TGG | + | chr2_2:21016090-21016109 | Msa0243700:intron | 15.0% |
| !! | AATAATATGTAAAAGTTAAG+TGG | - | chr2_2:21016174-21016193 | None:intergenic | 15.0% |
| !!! | ATTGTTTTGAAATCAATTAA+AGG | + | chr2_2:21016875-21016894 | Msa0243700:CDS | 15.0% |
| !!! | TTGTTTTGAAATCAATTAAA+GGG | + | chr2_2:21016876-21016895 | Msa0243700:CDS | 15.0% |
| !!! | ATATTATTTTCCTTTTTCCT+AGG | + | chr2_2:21013990-21014009 | Msa0243700:intron | 20.0% |
| !!! | GCATTTGATATTGATAATTT+AGG | + | chr2_2:21014325-21014344 | Msa0243700:CDS | 20.0% |
| !!! | ATAAAACATTATTTGGAATG+GGG | - | chr2_2:21014920-21014939 | None:intergenic | 20.0% |
| !! | TCGATTCAATAGAATAAAAA+AGG | + | chr2_2:21015308-21015327 | Msa0243700:intron | 20.0% |
| !!! | AGTTGCAAAATTTTATTGAA+AGG | - | chr2_2:21015750-21015769 | None:intergenic | 20.0% |
| !! | ACATCTACTTTAATAGTTTA+TGG | + | chr2_2:21015931-21015950 | Msa0243700:intron | 20.0% |
| !!! | AAGAATTGATAATTGTTACA+TGG | + | chr2_2:21016778-21016797 | Msa0243700:CDS | 20.0% |
| !! | ATTGTTAACAATATGTTTAG+TGG | + | chr2_2:21016917-21016936 | Msa0243700:CDS | 20.0% |
| !! | CAATTGGAACATTATTATTA+GGG | - | chr2_2:21016946-21016965 | None:intergenic | 20.0% |
| !! | ACAATTGGAACATTATTATT+AGG | - | chr2_2:21016947-21016966 | None:intergenic | 20.0% |
| ! | AAAAAAAACTCCTAGGAAAA+AGG | - | chr2_2:21014003-21014022 | None:intergenic | 25.0% |
| ! | AATCATCAAAAAAAACTCCT+AGG | - | chr2_2:21014010-21014029 | None:intergenic | 25.0% |
| !! | CATTTTTCTAACATTGTTTG+AGG | + | chr2_2:21014087-21014106 | Msa0243700:intron | 25.0% |
| !!! | TTAACTCTTAACTTGTTTTC+TGG | - | chr2_2:21014759-21014778 | None:intergenic | 25.0% |
| ! | TAAGAGTTAAAACAAAGAAG+AGG | + | chr2_2:21014769-21014788 | Msa0243700:intron | 25.0% |
| ! | AAGAGTTAAAACAAAGAAGA+GGG | + | chr2_2:21014770-21014789 | Msa0243700:intron | 25.0% |
| !! | TTTTCTTGAATGATTCTTGA+AGG | - | chr2_2:21014892-21014911 | None:intergenic | 25.0% |
| !! | TATTCAATGCAAGAACATTT+TGG | - | chr2_2:21015097-21015116 | None:intergenic | 25.0% |
| !!! | ATCAGTAGATATTTTTGAAG+AGG | + | chr2_2:21015520-21015539 | Msa0243700:intron | 25.0% |
| ! | TTCTATGATGTACATATGTT+AGG | + | chr2_2:21015649-21015668 | Msa0243700:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | - | chr2_2:21016037-21016056 | None:intergenic | 25.0% |
| ! | AGCTAAAACATCAAAAGAAA+AGG | - | chr2_2:21015806-21015825 | None:intergenic | 25.0% |
| !! | CACTAAAACATCAAAAGTTT+TGG | + | chr2_2:21015996-21016015 | Msa0243700:intron | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | + | chr2_2:21016032-21016051 | Msa0243700:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | chr2_2:21016037-21016056 | Msa0243700:intron | 25.0% |
| ! | TCATAACATAACAATATTGG+AGG | + | chr2_2:21016093-21016112 | Msa0243700:intron | 25.0% |
| ! | CATAACATAACAATATTGGA+GGG | + | chr2_2:21016094-21016113 | Msa0243700:intron | 25.0% |
| ! | TTGATGCATTTAATTCAACA+AGG | - | chr2_2:21016283-21016302 | None:intergenic | 25.0% |
| ! | AGATTACTTGAACAAACAAT+AGG | + | chr2_2:21016344-21016363 | Msa0243700:CDS | 25.0% |
| ! | ACTTTGAACTTTAATTCCTT+CGG | - | chr2_2:21016495-21016514 | None:intergenic | 25.0% |
| ! | AAGAAAACTACTTGATATGA+AGG | - | chr2_2:21016528-21016547 | None:intergenic | 25.0% |
| !! | TTCATATCAAGTAGTTTTCT+TGG | + | chr2_2:21016527-21016546 | Msa0243700:CDS | 25.0% |
| ! | GGATTATAATTCTATAGTCA+TGG | + | chr2_2:21016799-21016818 | Msa0243700:CDS | 25.0% |
| !!! | TTACGAATGGTTTTTTCTTA+GGG | + | chr2_2:21016843-21016862 | Msa0243700:CDS | 25.0% |
| ! | TCAATTAAAGGGAAAGTTTA+TGG | + | chr2_2:21016887-21016906 | Msa0243700:CDS | 25.0% |
| ! | TTCCAATTGTGAAATTAGAT+GGG | + | chr2_2:21016957-21016976 | Msa0243700:CDS | 25.0% |
| ! | ATTGATATGAACAATGTGAT+TGG | + | chr2_2:21017007-21017026 | Msa0243700:CDS | 25.0% |
| !!! | ATGTTTTGGTATTTCCTAAT+AGG | + | chr2_2:21017104-21017123 | Msa0243700:CDS | 25.0% |
| ! | TGAAAATGACTAATCCTATT+AGG | - | chr2_2:21017121-21017140 | None:intergenic | 25.0% |
| ! | ATATTCATTTCATGCATTAG+AGG | + | chr2_2:21017141-21017160 | Msa0243700:CDS | 25.0% |
| ! | TATTCATTTCATGCATTAGA+GGG | + | chr2_2:21017142-21017161 | Msa0243700:CDS | 25.0% |
| !!! | ACCTTTTTTTTGTGTGAAGA+TGG | - | chr2_2:21013944-21013963 | None:intergenic | 30.0% |
| !!! | GGTGTTATCATTGATTTTCA+AGG | + | chr2_2:21014382-21014401 | Msa0243700:CDS | 30.0% |
| !!! | GTTATCATTGATTTTCAAGG+TGG | + | chr2_2:21014385-21014404 | Msa0243700:CDS | 30.0% |
| ATCAATCAAAGTAGTAAAGG+AGG | - | chr2_2:21014502-21014521 | None:intergenic | 30.0% | |
| TGCATCAATCAAAGTAGTAA+AGG | - | chr2_2:21014505-21014524 | None:intergenic | 30.0% | |
| ! | AGAACTCGAAAAAAGTACAA+GGG | + | chr2_2:21014721-21014740 | Msa0243700:intron | 30.0% |
| TGGAGTTATTAAGAAATTGC+AGG | - | chr2_2:21015162-21015181 | None:intergenic | 30.0% | |
| TTGAGTGAGACTTAAATTGA+TGG | - | chr2_2:21015182-21015201 | None:intergenic | 30.0% | |
| TCTCACCAAACAATACTAAA+GGG | + | chr2_2:21015224-21015243 | Msa0243700:intron | 30.0% | |
| !! | GATTTGTTCATTTTCCAACA+AGG | - | chr2_2:21015286-21015305 | None:intergenic | 30.0% |
| ATCAAAAGAAAAGGAATGGA+TGG | - | chr2_2:21016041-21016060 | None:intergenic | 30.0% | |
| !!! | TCTTTTGATGTTTTAGCTCT+TGG | + | chr2_2:21015808-21015827 | Msa0243700:intron | 30.0% |
| ATTCACATGTGATAAACCAA+AGG | + | chr2_2:21015906-21015925 | Msa0243700:intron | 30.0% | |
| ATTAAAGTAGATGTGACCTT+TGG | - | chr2_2:21015925-21015944 | None:intergenic | 30.0% | |
| ! | TTTATGGTGTTTTCCAACAA+GGG | + | chr2_2:21015947-21015966 | Msa0243700:intron | 30.0% |
| ATCAAAAGAAAAGGAATGGA+GGG | + | chr2_2:21016041-21016060 | Msa0243700:intron | 30.0% | |
| ! | ACTTTTACATCAATGACCAA+AGG | + | chr2_2:21016208-21016227 | Msa0243700:intron | 30.0% |
| AAATGTTTCAGAAGCTCTTA+AGG | - | chr2_2:21016246-21016265 | None:intergenic | 30.0% | |
| TTGTTCAAGTAATCTGTTGT+TGG | - | chr2_2:21016339-21016358 | None:intergenic | 30.0% | |
| GAAGGAATTAAAGTTCAAAG+TGG | + | chr2_2:21016494-21016513 | Msa0243700:CDS | 30.0% | |
| TACTTGATATGAAGGTTTCA+TGG | - | chr2_2:21016520-21016539 | None:intergenic | 30.0% | |
| ! | CAAAGGTGAAAGACAATTTT+CGG | + | chr2_2:21016574-21016593 | Msa0243700:CDS | 30.0% |
| ! | AAAGGTGAAAGACAATTTTC+GGG | + | chr2_2:21016575-21016594 | Msa0243700:CDS | 30.0% |
| CATTGTTATAACAAAGCAAC+AGG | + | chr2_2:21016707-21016726 | Msa0243700:CDS | 30.0% | |
| ! | TATAACAAAGCAACAGGTTT+TGG | + | chr2_2:21016713-21016732 | Msa0243700:CDS | 30.0% |
| ! | GAATTTTGTTGAAGTTAGCA+GGG | + | chr2_2:21016744-21016763 | Msa0243700:CDS | 30.0% |
| !!! | GTTACGAATGGTTTTTTCTT+AGG | + | chr2_2:21016842-21016861 | Msa0243700:CDS | 30.0% |
| !!! | TACGAATGGTTTTTTCTTAG+GGG | + | chr2_2:21016844-21016863 | Msa0243700:CDS | 30.0% |
| GTTCCAATTGTGAAATTAGA+TGG | + | chr2_2:21016956-21016975 | Msa0243700:CDS | 30.0% | |
| TCCAATTGTGAAATTAGATG+GGG | + | chr2_2:21016958-21016977 | Msa0243700:CDS | 30.0% | |
| ATTTAGTGACATTGATCAAG+TGG | + | chr2_2:21016982-21017001 | Msa0243700:CDS | 30.0% | |
| !!! | ATGATTTTAAGATCAACCGT+TGG | + | chr2_2:21017031-21017050 | Msa0243700:CDS | 30.0% |
| !!! | TGATTTTAAGATCAACCGTT+GGG | + | chr2_2:21017032-21017051 | Msa0243700:CDS | 30.0% |
| !! | GGGTGATTTTTCAAATGTTT+TGG | + | chr2_2:21017090-21017109 | Msa0243700:CDS | 30.0% |
| GTCAAATAATGTTGTAGTTG+TGG | + | chr2_2:21017198-21017217 | Msa0243700:CDS | 30.0% | |
| AAGTGACAAGAGAAATGCTA+AGG | - | chr2_2:21013813-21013832 | None:intergenic | 35.0% | |
| !!! | AGCATTTCTCTTGTCACTTT+TGG | + | chr2_2:21013814-21013833 | Msa0243700:CDS | 35.0% |
| GCCATCTTCACACAAAAAAA+AGG | + | chr2_2:21013940-21013959 | Msa0243700:CDS | 35.0% | |
| GATTGGAAAATGAAGAAGAG+TGG | + | chr2_2:21014217-21014236 | Msa0243700:intron | 35.0% | |
| GATCTGCACCATACTTAATT+GGG | - | chr2_2:21014255-21014274 | None:intergenic | 35.0% | |
| AGCTTCTACAGCTTTCATAA+TGG | - | chr2_2:21014305-21014324 | None:intergenic | 35.0% | |
| TTAGGGCTTGAATTATTACC+AGG | + | chr2_2:21014343-21014362 | Msa0243700:CDS | 35.0% | |
| AATCAATGATAACACCTCCA+AGG | - | chr2_2:21014378-21014397 | None:intergenic | 35.0% | |
| CAAAGTAGTAAAGGAGGAAA+AGG | - | chr2_2:21014496-21014515 | None:intergenic | 35.0% | |
| ! | CAGAACTCGAAAAAAGTACA+AGG | + | chr2_2:21014720-21014739 | Msa0243700:intron | 35.0% |
| !!! | CTCTTAACTTGTTTTCTGGT+GGG | - | chr2_2:21014755-21014774 | None:intergenic | 35.0% |
| !!! | ACTCTTAACTTGTTTTCTGG+TGG | - | chr2_2:21014756-21014775 | None:intergenic | 35.0% |
| !!! | AACCTCAATTTTTTCGTAGC+TGG | + | chr2_2:21014820-21014839 | Msa0243700:intron | 35.0% |
| TTCCAGCTACGAAAAAATTG+AGG | - | chr2_2:21014825-21014844 | None:intergenic | 35.0% | |
| ! | AGTGGGTTCAAAATTGTTAG+AGG | - | chr2_2:21015205-21015224 | None:intergenic | 35.0% |
| ! | TAGTATTGTTTGGTGAGAGT+GGG | - | chr2_2:21015222-21015241 | None:intergenic | 35.0% |
| ! | TTAGTATTGTTTGGTGAGAG+TGG | - | chr2_2:21015223-21015242 | None:intergenic | 35.0% |
| CTCTCACCAAACAATACTAA+AGG | + | chr2_2:21015223-21015242 | Msa0243700:intron | 35.0% | |
| CTCACCAAACAATACTAAAG+GGG | + | chr2_2:21015225-21015244 | Msa0243700:intron | 35.0% | |
| TCACCAAACAATACTAAAGG+GGG | + | chr2_2:21015226-21015245 | Msa0243700:intron | 35.0% | |
| ! | TTCATTTTCCAACAAGGCTT+TGG | - | chr2_2:21015280-21015299 | None:intergenic | 35.0% |
| GCACAAACCAGACAAAATAA+AGG | + | chr2_2:21015420-21015439 | Msa0243700:intron | 35.0% | |
| !!! | CAGATCTCCTTTATTTTGTC+TGG | - | chr2_2:21015430-21015449 | None:intergenic | 35.0% |
| ! | TTATCTGTTTTGCACTGCTA+AGG | - | chr2_2:21015590-21015609 | None:intergenic | 35.0% |
| GGATGGAGTAAGATGTTAAA+AGG | - | chr2_2:21015780-21015799 | None:intergenic | 35.0% | |
| ! | GTTTATGGTGTTTTCCAACA+AGG | + | chr2_2:21015946-21015965 | Msa0243700:intron | 35.0% |
| TTTCTCAAGTTTACCCTTGT+TGG | - | chr2_2:21015963-21015982 | None:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | + | chr2_2:21016040-21016059 | Msa0243700:intron | 35.0% | |
| CATCAATGACCAAAGGTAAA+TGG | + | chr2_2:21016215-21016234 | Msa0243700:intron | 35.0% | |
| ! | TGCTTTTGTTGCATTTTGGA+GGG | - | chr2_2:21016315-21016334 | None:intergenic | 35.0% |
| ! | ATGCTTTTGTTGCATTTTGG+AGG | - | chr2_2:21016316-21016335 | None:intergenic | 35.0% |
| ! | TGGATGCTTTTGTTGCATTT+TGG | - | chr2_2:21016319-21016338 | None:intergenic | 35.0% |
| TTGAACTTTAATTCCTTCGG+TGG | - | chr2_2:21016492-21016511 | None:intergenic | 35.0% | |
| TGCTGAGAAAATTGCAACAT+CGG | - | chr2_2:21016639-21016658 | None:intergenic | 35.0% | |
| ! | AGCCATAGGAATTGTTGTTA+GGG | + | chr2_2:21016658-21016677 | Msa0243700:CDS | 35.0% |
| ! | GGAATTTTGTTGAAGTTAGC+AGG | + | chr2_2:21016743-21016762 | Msa0243700:CDS | 35.0% |
| TTCGTAACATGAACTTGAAC+AGG | - | chr2_2:21016830-21016849 | None:intergenic | 35.0% | |
| ! | GTTCAAGTTCATGTTACGAA+TGG | + | chr2_2:21016830-21016849 | Msa0243700:CDS | 35.0% |
| !!! | AATGGTTTTTTCTTAGGGGA+TGG | + | chr2_2:21016848-21016867 | Msa0243700:CDS | 35.0% |
| CCAATTGTGAAATTAGATGG+GGG | + | chr2_2:21016959-21016978 | Msa0243700:CDS | 35.0% | |
| AAGTTGAATGTGGATGGTAA+TGG | + | chr2_2:21017055-21017074 | Msa0243700:CDS | 35.0% | |
| ACTGAATGTGCAACAAACTT+TGG | - | chr2_2:21017169-21017188 | None:intergenic | 35.0% | |
| AAAGTGAGAAACCAGTTCAT+GGG | + | chr2_2:21017221-21017240 | Msa0243700:CDS | 35.0% | |
| TTCTACGTGTTCATTGAAGC+AGG | - | chr2_2:21013864-21013883 | None:intergenic | 40.0% | |
| ACAATCTCATTCTCTCTGTG+TGG | + | chr2_2:21014189-21014208 | Msa0243700:intron | 40.0% | |
| ! | TCATTCTCTCTGTGTGGTTT+TGG | + | chr2_2:21014195-21014214 | Msa0243700:intron | 40.0% |
| AATGAAGAAGAGTGGAAGAG+TGG | + | chr2_2:21014225-21014244 | Msa0243700:intron | 40.0% | |
| GTGGTGTACCCAATTAAGTA+TGG | + | chr2_2:21014244-21014263 | Msa0243700:CDS | 40.0% | |
| GGATCTGCACCATACTTAAT+TGG | - | chr2_2:21014256-21014275 | None:intergenic | 40.0% | |
| TTACCAGGAATTAGAGACCT+TGG | + | chr2_2:21014358-21014377 | Msa0243700:CDS | 40.0% | |
| TCCCATCACATTTCCTTCAT+CGG | + | chr2_2:21014426-21014445 | Msa0243700:CDS | 40.0% | |
| !! | ACCTCGAAGAGGTTGATATA+CGG | + | chr2_2:21014848-21014867 | Msa0243700:intron | 40.0% |
| TAGCCCCCTTTAGTATTGTT+TGG | - | chr2_2:21015232-21015251 | None:intergenic | 40.0% | |
| !! | ACAAGGCTTTGGATTTCTCA+AGG | - | chr2_2:21015269-21015288 | None:intergenic | 40.0% |
| ! | TGAGAAATCCAAAGCCTTGT+TGG | + | chr2_2:21015269-21015288 | Msa0243700:intron | 40.0% |
| ! | AGCTCTTGGCACAAGTTTTA+AGG | + | chr2_2:21015822-21015841 | Msa0243700:intron | 40.0% |
| CAATGACCAAAGGTAAATGG+AGG | + | chr2_2:21016218-21016237 | Msa0243700:intron | 40.0% | |
| AAGGTTCCTCCATTTACCTT+TGG | - | chr2_2:21016227-21016246 | None:intergenic | 40.0% | |
| ! | TCAACAAGGTGTCTATCAGT+TGG | - | chr2_2:21016269-21016288 | None:intergenic | 40.0% |
| !! | TGTTGCATTTTGGAGGGTTT+TGG | - | chr2_2:21016309-21016328 | None:intergenic | 40.0% |
| TAATTCCTTCGGTGGTGAAA+TGG | - | chr2_2:21016484-21016503 | None:intergenic | 40.0% | |
| ! | CAGCCATAGGAATTGTTGTT+AGG | + | chr2_2:21016657-21016676 | Msa0243700:CDS | 40.0% |
| ! | GCCATAGGAATTGTTGTTAG+GGG | + | chr2_2:21016659-21016678 | Msa0243700:CDS | 40.0% |
| TCCCCTAACAACAATTCCTA+TGG | - | chr2_2:21016663-21016682 | None:intergenic | 40.0% | |
| !! | AACAAAGCAACAGGTTTTGG+TGG | + | chr2_2:21016716-21016735 | Msa0243700:CDS | 40.0% |
| CCCCCATCTAATTTCACAAT+TGG | - | chr2_2:21016962-21016981 | None:intergenic | 40.0% | |
| ATCCACATTCAACTTCCCAA+CGG | - | chr2_2:21017050-21017069 | None:intergenic | 40.0% | |
| !! | TGGATGGTAATGGCACAAAA+TGG | + | chr2_2:21017065-21017084 | Msa0243700:CDS | 40.0% |
| !! | GGATGGTAATGGCACAAAAT+GGG | + | chr2_2:21017066-21017085 | Msa0243700:CDS | 40.0% |
| GAAAGTGAGAAACCAGTTCA+TGG | + | chr2_2:21017220-21017239 | Msa0243700:CDS | 40.0% | |
| AAGTGAGAAACCAGTTCATG+GGG | + | chr2_2:21017222-21017241 | Msa0243700:CDS | 40.0% | |
| TACGTGTTCATTGAAGCAGG+TGG | - | chr2_2:21013861-21013880 | None:intergenic | 45.0% | |
| !!! | CTCTCTGTGTGGTTTTGGAT+TGG | + | chr2_2:21014200-21014219 | Msa0243700:intron | 45.0% |
| AAGTATGGTGCAGATCCAAC+TGG | + | chr2_2:21014259-21014278 | Msa0243700:CDS | 45.0% | |
| AGTATGGTGCAGATCCAACT+GGG | + | chr2_2:21014260-21014279 | Msa0243700:CDS | 45.0% | |
| ! | CTGCTTTCTTTTTCCCCAGT+TGG | - | chr2_2:21014277-21014296 | None:intergenic | 45.0% |
| GCCGATGAAGGAAATGTGAT+GGG | - | chr2_2:21014430-21014449 | None:intergenic | 45.0% | |
| AGCCGATGAAGGAAATGTGA+TGG | - | chr2_2:21014431-21014450 | None:intergenic | 45.0% | |
| ATCACATTTCCTTCATCGGC+TGG | + | chr2_2:21014430-21014449 | Msa0243700:CDS | 45.0% | |
| TCCGTATATCAACCTCTTCG+AGG | - | chr2_2:21014852-21014871 | None:intergenic | 45.0% | |
| GTGTTTCCTAGTACGCTTCT+AGG | - | chr2_2:21015136-21015155 | None:intergenic | 45.0% | |
| CTCGGTAACTTGAATCGAAG+AGG | - | chr2_2:21016403-21016422 | None:intergenic | 45.0% | |
| ! | CTCTTCGATTCAAGTTACCG+AGG | + | chr2_2:21016401-21016420 | Msa0243700:CDS | 45.0% |
| ! | TTCGATTCAAGTTACCGAGG+TGG | + | chr2_2:21016404-21016423 | Msa0243700:CDS | 45.0% |
| CGATGAATATTCCTCCACCT+CGG | - | chr2_2:21016421-21016440 | None:intergenic | 45.0% | |
| CTTGGACAACACTCAACAGT+CGG | + | chr2_2:21016545-21016564 | Msa0243700:CDS | 45.0% | |
| ! | GCAATTTTCTCAGCAGCCAT+AGG | + | chr2_2:21016644-21016663 | Msa0243700:CDS | 45.0% |
| GGACAAGCTAACATGATCAC+AGG | + | chr2_2:21016680-21016699 | Msa0243700:CDS | 45.0% | |
| !! | GCAACAGGTTTTGGTGGAAT+TGG | + | chr2_2:21016722-21016741 | Msa0243700:CDS | 45.0% |
| AACCGTTGGGAAGTTGAATG+TGG | + | chr2_2:21017045-21017064 | Msa0243700:CDS | 45.0% | |
| GTTGGGAAGTTGAATGTGGA+TGG | + | chr2_2:21017049-21017068 | Msa0243700:CDS | 45.0% | |
| !! | TGGTAATGGCACAAAATGGG+TGG | + | chr2_2:21017069-21017088 | Msa0243700:CDS | 45.0% |
| ! | GGTAATGGCACAAAATGGGT+GGG | + | chr2_2:21017070-21017089 | Msa0243700:CDS | 45.0% |
| AAGGAAACAACCCCATGAAC+TGG | - | chr2_2:21017235-21017254 | None:intergenic | 45.0% | |
| !! | AATTTAAATAAAACATTATT+TGG | - | chr2_2:21014927-21014946 | None:intergenic | 5.0% |
| GTGTGAAGATGGCTGAGACA+TGG | - | chr2_2:21013933-21013952 | None:intergenic | 50.0% | |
| GTATGGTGCAGATCCAACTG+GGG | + | chr2_2:21014261-21014280 | Msa0243700:CDS | 50.0% | |
| CCTCCAAGGTCTCTAATTCC+TGG | - | chr2_2:21014364-21014383 | None:intergenic | 50.0% | |
| CCAGGAATTAGAGACCTTGG+AGG | + | chr2_2:21014361-21014380 | Msa0243700:CDS | 50.0% | |
| ACAAGATTGCCAGCCGATGA+AGG | - | chr2_2:21014442-21014461 | None:intergenic | 50.0% | |
| ! | TTCATCGGCTGGCAATCTTG+TGG | + | chr2_2:21014441-21014460 | Msa0243700:CDS | 50.0% |
| AGCTGGAAAACACCTCGAAG+AGG | + | chr2_2:21014837-21014856 | Msa0243700:intron | 50.0% | |
| CCTAGTACGCTTCTAGGTAC+AGG | - | chr2_2:21015130-21015149 | None:intergenic | 50.0% | |
| ! | CCTGTACCTAGAAGCGTACT+AGG | + | chr2_2:21015127-21015146 | Msa0243700:intron | 50.0% |
| ! | GATTCAAGTTACCGAGGTGG+AGG | + | chr2_2:21016407-21016426 | Msa0243700:CDS | 50.0% |
| TTCCTCCATTTCACCACCGA+AGG | + | chr2_2:21016476-21016495 | Msa0243700:CDS | 50.0% | |
| TTCCTTCGGTGGTGAAATGG+AGG | - | chr2_2:21016481-21016500 | None:intergenic | 50.0% | |
| GCTTCTAGGTACAGGCTCAC+TGG | - | chr2_2:21015122-21015141 | None:intergenic | 55.0% | |
| GGACAACACTCAACAGTCGG+CGG | + | chr2_2:21016548-21016567 | Msa0243700:CDS | 55.0% | |
| TCAACAGTCGGCGGAGACAA+AGG | + | chr2_2:21016557-21016576 | Msa0243700:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 21013756 | 21017270 | 21013756 | ID=Msa0243700;Name=Msa0243700 |
| chr2_2 | mRNA | 21013756 | 21017270 | 21013756 | ID=Msa0243700-mRNA-1;Parent=Msa0243700;Name=Msa0243700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=32|1|0.66|1|0.5|0.33|3|0|481 |
| chr2_2 | exon | 21013756 | 21013961 | 21013756 | ID=Msa0243700-mRNA-1:exon:8395;Parent=Msa0243700-mRNA-1 |
| chr2_2 | exon | 21014232 | 21014462 | 21014232 | ID=Msa0243700-mRNA-1:exon:8396;Parent=Msa0243700-mRNA-1 |
| chr2_2 | exon | 21016230 | 21017270 | 21016230 | ID=Msa0243700-mRNA-1:exon:8397;Parent=Msa0243700-mRNA-1 |
| chr2_2 | five_prime_UTR | 21013756 | 21013787 | 21013756 | ID=Msa0243700-mRNA-1:five_prime_utr;Parent=Msa0243700-mRNA-1 |
| chr2_2 | CDS | 21013788 | 21013961 | 21013788 | ID=Msa0243700-mRNA-1:cds;Parent=Msa0243700-mRNA-1 |
| chr2_2 | CDS | 21014232 | 21014462 | 21014232 | ID=Msa0243700-mRNA-1:cds;Parent=Msa0243700-mRNA-1 |
| chr2_2 | CDS | 21016230 | 21017270 | 21016230 | ID=Msa0243700-mRNA-1:cds;Parent=Msa0243700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
