Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462440 | AES65134.1 | 86.321 | 424 | 23 | 1 | 2 | 390 | 65 | 488 | 0.0 | 703 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462440 | sp|O49432|QRT3_ARATH | 50.000 | 424 | 155 | 5 | 6 | 390 | 74 | 479 | 4.64e-133 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462440 | G7INF1 | 86.321 | 424 | 23 | 1 | 2 | 390 | 65 | 488 | 0.0 | 703 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1420060 | Msa1462440 | 0.816295 | 5.952438e-52 | -8.615850e-47 |
| Msa1436440 | Msa1462440 | 0.802869 | 4.571377e-49 | -8.615850e-47 |
| Msa0134130 | Msa1462440 | 0.810005 | 1.429205e-50 | -8.615850e-47 |
| Msa0161200 | Msa1462440 | 0.815171 | 1.059576e-51 | -8.615850e-47 |
| Msa1340670 | Msa1462440 | 0.918702 | 1.124467e-86 | -8.615850e-47 |
| Msa0413930 | Msa1462440 | 0.825370 | 4.863381e-54 | -8.615850e-47 |
| Msa0458950 | Msa1462440 | 0.802543 | 5.338587e-49 | -8.615850e-47 |
| Msa0243700 | Msa1462440 | 0.928885 | 1.531759e-92 | -8.615850e-47 |
| Msa0282230 | Msa1462440 | 0.864732 | 9.838253e-65 | -8.615850e-47 |
| Msa0906370 | Msa1462440 | 0.811666 | 6.246944e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462440 | MtrunA17_Chr2g0297001 | 86.321 | 424 | 23 | 1 | 2 | 390 | 68 | 491 | 0.0 | 702 |
| Msa1462440 | MtrunA17_Chr4g0052711 | 67.213 | 427 | 100 | 4 | 2 | 390 | 56 | 480 | 0.0 | 551 |
| Msa1462440 | MtrunA17_Chr2g0296981 | 47.816 | 412 | 164 | 6 | 6 | 378 | 82 | 481 | 1.35e-123 | 366 |
| Msa1462440 | MtrunA17_Chr6g0455291 | 46.495 | 428 | 172 | 7 | 1 | 390 | 82 | 490 | 2.46e-115 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462440 | AT4G20040.1 | 58.451 | 426 | 135 | 6 | 2 | 390 | 63 | 483 | 3.28e-170 | 484 |
| Msa1462440 | AT4G20050.7 | 50.000 | 424 | 155 | 5 | 6 | 390 | 74 | 479 | 4.71e-134 | 392 |
| Msa1462440 | AT4G20050.6 | 50.000 | 424 | 155 | 5 | 6 | 390 | 74 | 479 | 4.71e-134 | 392 |
| Msa1462440 | AT4G20050.2 | 50.000 | 424 | 155 | 5 | 6 | 390 | 74 | 479 | 4.71e-134 | 392 |
| Msa1462440 | AT4G20050.1 | 50.000 | 424 | 155 | 5 | 6 | 390 | 74 | 479 | 4.71e-134 | 392 |
| Msa1462440 | AT4G20050.5 | 50.000 | 424 | 155 | 5 | 6 | 390 | 99 | 504 | 6.99e-134 | 393 |
| Msa1462440 | AT4G20050.4 | 49.123 | 399 | 146 | 5 | 31 | 390 | 1 | 381 | 6.43e-122 | 358 |
| Msa1462440 | AT4G20050.3 | 49.123 | 399 | 146 | 5 | 31 | 390 | 1 | 381 | 6.43e-122 | 358 |
Find 76 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGATATTGATAATTT+AGG | 0.107857 | tig0042275:+3861 | Msa1462440:CDS |
| GGATCTGCACCATACTTAAT+TGG | 0.153680 | tig0042275:-3789 | Msa1462440:intergenic |
| CATTTGATATTGATAATTTA+GGG | 0.251344 | tig0042275:+3862 | Msa1462440:CDS |
| CATCAATGACCAAAGGTAAA+TGG | 0.278889 | tig0042275:+5753 | Msa1462440:intron |
| TATAACAAAGCAACAGGTTT+TGG | 0.286379 | tig0042275:+6251 | Msa1462440:CDS |
| TGAAAATGACTAATCCTATT+AGG | 0.302520 | tig0042275:-6654 | Msa1462440:intergenic |
| CAGCCATAGGAATTGTTGTT+AGG | 0.306110 | tig0042275:+6195 | Msa1462440:CDS |
| TGGATGGTAATGGCACAAAA+TGG | 0.367127 | tig0042275:+6601 | Msa1462440:CDS |
| AAATGTTTCAGAAGCTCTTA+AGG | 0.373297 | tig0042275:-5781 | Msa1462440:intergenic |
| TACTTGATATGAAGGTTTCA+TGG | 0.388165 | tig0042275:-6055 | Msa1462440:intergenic |
| CCTCCAAGGTCTCTAATTCC+TGG | 0.397675 | tig0042275:-3897 | Msa1462440:intergenic |
| CATTGTTATAACAAAGCAAC+AGG | 0.404226 | tig0042275:+6245 | Msa1462440:CDS |
| TAATTCCTTCGGTGGTGAAA+TGG | 0.411730 | tig0042275:-6019 | Msa1462440:intergenic |
| ACTTTGAACTTTAATTCCTT+CGG | 0.420815 | tig0042275:-6030 | Msa1462440:intergenic |
| AGCTTCTACAGCTTTCATAA+TGG | 0.424025 | tig0042275:-3838 | Msa1462440:intergenic |
| TTCGTAACATGAACTTGAAC+AGG | 0.426663 | tig0042275:-6365 | Msa1462440:intergenic |
| AAGTATGGTGCAGATCCAAC+TGG | 0.430294 | tig0042275:+3795 | Msa1462440:CDS |
| TTGTTCAAGTAATCTGTTGT+TGG | 0.430783 | tig0042275:-5874 | Msa1462440:intergenic |
| AATTCATTGTTCAACAAAGA+AGG | 0.431005 | tig0042275:-6787 | Msa1462440:intergenic |
| ACTGAATGTGCAACAAACTT+TGG | 0.434126 | tig0042275:-6702 | Msa1462440:intergenic |
| AAGAAAACTACTTGATATGA+AGG | 0.434177 | tig0042275:-6063 | Msa1462440:intergenic |
| ATATTCATTTCATGCATTAG+AGG | 0.439787 | tig0042275:+6677 | Msa1462440:CDS |
| GATCTGCACCATACTTAATT+GGG | 0.441924 | tig0042275:-3788 | Msa1462440:intergenic |
| ATCACATTTCCTTCATCGGC+TGG | 0.454793 | tig0042275:+3966 | Msa1462440:CDS |
| AGATTACTTGAACAAACAAT+AGG | 0.463517 | tig0042275:+5882 | Msa1462440:CDS |
| TCCCATCACATTTCCTTCAT+CGG | 0.471050 | tig0042275:+3962 | Msa1462440:CDS |
| AGCCATAGGAATTGTTGTTA+GGG | 0.472547 | tig0042275:+6196 | Msa1462440:CDS |
| GAAAGTGAGAAACCAGTTCA+TGG | 0.473042 | tig0042275:+6756 | Msa1462440:CDS |
| AAGGAAACAACCCCATGAAC+TGG | 0.475950 | tig0042275:-6768 | Msa1462440:intergenic |
| TTACCAGGAATTAGAGACCT+TGG | 0.494991 | tig0042275:+3894 | Msa1462440:CDS |
| TCCCCTAACAACAATTCCTA+TGG | 0.501817 | tig0042275:-6198 | Msa1462440:intergenic |
| TATTCATTTCATGCATTAGA+GGG | 0.507592 | tig0042275:+6678 | Msa1462440:CDS |
| AAGAATTGATAATTGTTACA+TGG | 0.510868 | tig0042275:+6316 | Msa1462440:CDS |
| GTCAAATAATGTTGTAGTTG+TGG | 0.512201 | tig0042275:+6734 | Msa1462440:CDS |
| TTAGGGCTTGAATTATTACC+AGG | 0.514044 | tig0042275:+3879 | Msa1462440:CDS |
| TTCCTCCATTTCACCACCGA+AGG | 0.521417 | tig0042275:+6014 | Msa1462440:CDS |
| TCAACAAGGTGTCTATCAGT+TGG | 0.524915 | tig0042275:-5804 | Msa1462440:intergenic |
| GTGGTGTACCCAATTAAGTA+TGG | 0.526549 | tig0042275:+3780 | Msa1462440:CDS |
| ACAAGATTGCCAGCCGATGA+AGG | 0.526613 | tig0042275:-3975 | Msa1462440:intergenic |
| CTTGGACAACACTCAACAGT+CGG | 0.527472 | tig0042275:+6083 | Msa1462440:CDS |
| GTTCAAGTTCATGTTACGAA+TGG | 0.528355 | tig0042275:+6368 | Msa1462440:CDS |
| GATTGGAAAATGAAGAAGAG+TGG | 0.536042 | tig0042275:+3753 | None:intergenic |
| GATTCAAGTTACCGAGGTGG+AGG | 0.539152 | tig0042275:+5945 | Msa1462440:CDS |
| TTGAACTTTAATTCCTTCGG+TGG | 0.542054 | tig0042275:-6027 | Msa1462440:intergenic |
| ATTGATATGAACAATGTGAT+TGG | 0.543536 | tig0042275:+6543 | Msa1462440:CDS |
| TGGTAATGGCACAAAATGGG+TGG | 0.549729 | tig0042275:+6605 | Msa1462440:CDS |
| GGATGGTAATGGCACAAAAT+GGG | 0.551911 | tig0042275:+6602 | Msa1462440:CDS |
| GGATTATAATTCTATAGTCA+TGG | 0.563335 | tig0042275:+6337 | Msa1462440:CDS |
| AAAGTGAGAAACCAGTTCAT+GGG | 0.566325 | tig0042275:+6757 | Msa1462440:CDS |
| TTCATCGGCTGGCAATCTTG+TGG | 0.566505 | tig0042275:+3977 | Msa1462440:CDS |
| TCAACAGTCGGCGGAGACAA+AGG | 0.569193 | tig0042275:+6095 | Msa1462440:CDS |
| AATGAAGAAGAGTGGAAGAG+TGG | 0.571785 | tig0042275:+3761 | None:intergenic |
| TTCCTTCGGTGGTGAAATGG+AGG | 0.577526 | tig0042275:-6016 | Msa1462440:intergenic |
| GCCGATGAAGGAAATGTGAT+GGG | 0.577733 | tig0042275:-3963 | Msa1462440:intergenic |
| CCAGGAATTAGAGACCTTGG+AGG | 0.587401 | tig0042275:+3897 | Msa1462440:CDS |
| GGACAAGCTAACATGATCAC+AGG | 0.590351 | tig0042275:+6218 | Msa1462440:CDS |
| AGTATGGTGCAGATCCAACT+GGG | 0.590855 | tig0042275:+3796 | Msa1462440:CDS |
| ATTTAGTGACATTGATCAAG+TGG | 0.593403 | tig0042275:+6518 | Msa1462440:CDS |
| CTCGGTAACTTGAATCGAAG+AGG | 0.611266 | tig0042275:-5938 | Msa1462440:intergenic |
| AGCCGATGAAGGAAATGTGA+TGG | 0.612995 | tig0042275:-3964 | Msa1462440:intergenic |
| AAGTTGAATGTGGATGGTAA+TGG | 0.619073 | tig0042275:+6591 | Msa1462440:CDS |
| AATCAATGATAACACCTCCA+AGG | 0.627415 | tig0042275:-3911 | Msa1462440:intergenic |
| TGCTGAGAAAATTGCAACAT+CGG | 0.630023 | tig0042275:-6174 | Msa1462440:intergenic |
| TTCGATTCAAGTTACCGAGG+TGG | 0.636613 | tig0042275:+5942 | Msa1462440:CDS |
| GCCATAGGAATTGTTGTTAG+GGG | 0.637301 | tig0042275:+6197 | Msa1462440:CDS |
| GGTAATGGCACAAAATGGGT+GGG | 0.641219 | tig0042275:+6606 | Msa1462440:CDS |
| AACGGTTGGAAAGTTGAATG+TGG | 0.643847 | tig0042275:+6581 | Msa1462440:CDS |
| TTGATGCATTTAATTCAACA+AGG | 0.650431 | tig0042275:-5818 | Msa1462440:intergenic |
| GTTGGAAAGTTGAATGTGGA+TGG | 0.650817 | tig0042275:+6585 | Msa1462440:CDS |
| AAGTGAGAAACCAGTTCATG+GGG | 0.654495 | tig0042275:+6758 | Msa1462440:CDS |
| GAAGGAATTAAAGTTCAAAG+TGG | 0.662811 | tig0042275:+6032 | Msa1462440:CDS |
| CAATGACCAAAGGTAAATGG+AGG | 0.667241 | tig0042275:+5756 | Msa1462440:intron |
| CTCTTCGATTCAAGTTACCG+AGG | 0.668555 | tig0042275:+5939 | Msa1462440:CDS |
| GGACAACACTCAACAGTCGG+CGG | 0.701448 | tig0042275:+6086 | Msa1462440:CDS |
| CGATGAATATTCCTCCACCT+CGG | 0.718566 | tig0042275:-5956 | Msa1462440:intergenic |
| GTATGGTGCAGATCCAACTG+GGG | 0.760947 | tig0042275:+3797 | Msa1462440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATATAACAAATTA+AGG | - | tig0042275:4101-4120 | Msa1462440:intergenic | 10.0% |
| !!! | TTTTGATAATATTTATTAAG+AGG | + | tig0042275:4491-4510 | Msa1462440:intron | 10.0% |
| !! | AGAGAAAAATATTTATTTAT+AGG | - | tig0042275:4589-4608 | Msa1462440:intergenic | 10.0% |
| !!! | ATGAGATTTTAAAAAAATTA+TGG | + | tig0042275:4885-4904 | Msa1462440:intron | 10.0% |
| !!! | GAATTTTTTTTTTTTGAATA+AGG | + | tig0042275:5077-5096 | Msa1462440:intron | 10.0% |
| !! | TCAAAATAATAAATTTGTAT+TGG | + | tig0042275:5214-5233 | Msa1462440:intron | 10.0% |
| !!! | CATTTGATATTGATAATTTA+GGG | + | tig0042275:3862-3881 | Msa1462440:CDS | 15.0% |
| !!! | AATAAAACATTATTTGGAAT+GGG | - | tig0042275:4456-4475 | Msa1462440:intergenic | 15.0% |
| !! | AAATAAAACATTATTTGGAA+TGG | - | tig0042275:4457-4476 | Msa1462440:intergenic | 15.0% |
| !!! | TCTCTTTTGATTTTTTTTAT+TGG | + | tig0042275:4604-4623 | Msa1462440:intron | 15.0% |
| !!! | TCAAATTTAATTTGTAAACA+TGG | + | tig0042275:5001-5020 | Msa1462440:intron | 15.0% |
| !! | TGTGAATTTAATGATAAATA+AGG | - | tig0042275:5431-5450 | Msa1462440:intergenic | 15.0% |
| !! | AAATCATAACATAACAATAT+TGG | + | tig0042275:5628-5647 | Msa1462440:intron | 15.0% |
| !! | AATAATATGTAAAAGTTAAG+TGG | - | tig0042275:5712-5731 | Msa1462440:intergenic | 15.0% |
| !!! | ATTGTTTTGAAATCAATTAA+AGG | + | tig0042275:6413-6432 | Msa1462440:intron | 15.0% |
| !!! | TTGTTTTGAAATCAATTAAA+GGG | + | tig0042275:6414-6433 | Msa1462440:intron | 15.0% |
| !!! | GCATTTGATATTGATAATTT+AGG | + | tig0042275:3861-3880 | Msa1462440:CDS | 20.0% |
| !!! | ATAAAACATTATTTGGAATG+GGG | - | tig0042275:4455-4474 | Msa1462440:intergenic | 20.0% |
| !! | TCGATTCAATAGAATAAAAA+AGG | + | tig0042275:4843-4862 | Msa1462440:intron | 20.0% |
| !!! | AGTTGCAAAATTTTATTGAA+AGG | - | tig0042275:5288-5307 | Msa1462440:intergenic | 20.0% |
| !! | ACATCTACTTTAATAGTTTA+TGG | + | tig0042275:5469-5488 | Msa1462440:intron | 20.0% |
| !!! | AAGAATTGATAATTGTTACA+TGG | + | tig0042275:6316-6335 | Msa1462440:CDS | 20.0% |
| !! | ATAGTTAACAATATGTTTAG+TGG | + | tig0042275:6453-6472 | Msa1462440:intron | 20.0% |
| !! | CAATTGGAACATTATTATTA+GGG | - | tig0042275:6482-6501 | Msa1462440:intergenic | 20.0% |
| !! | ACAATTGGAACATTATTATT+AGG | - | tig0042275:6483-6502 | Msa1462440:intergenic | 20.0% |
| !!! | TTAACTCTTAACTTGTTTTC+TGG | - | tig0042275:4294-4313 | Msa1462440:intergenic | 25.0% |
| ! | TAAGAGTTAAAACAAAGAAG+AGG | + | tig0042275:4304-4323 | Msa1462440:intron | 25.0% |
| ! | AAGAGTTAAAACAAAGAAGA+GGG | + | tig0042275:4305-4324 | Msa1462440:intron | 25.0% |
| !! | TTTTCTTGAATGATTCTTGA+AGG | - | tig0042275:4427-4446 | Msa1462440:intergenic | 25.0% |
| !! | TATTCAATGCAAGAACATTT+TGG | - | tig0042275:4632-4651 | Msa1462440:intergenic | 25.0% |
| !!! | ATGAGTAGATATTTTTGAAG+AGG | + | tig0042275:5055-5074 | Msa1462440:intron | 25.0% |
| ! | TTCTATGATGTACATATGTT+AGG | + | tig0042275:5187-5206 | Msa1462440:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | - | tig0042275:5575-5594 | Msa1462440:intergenic | 25.0% |
| ! | AGCTAAAACATCAAAAGAAA+AGG | - | tig0042275:5344-5363 | Msa1462440:intergenic | 25.0% |
| !! | CACTAAAACATCAAAAGTTT+TGG | + | tig0042275:5534-5553 | Msa1462440:intron | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | + | tig0042275:5570-5589 | Msa1462440:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | tig0042275:5575-5594 | Msa1462440:intron | 25.0% |
| ! | TCATAACATAACAATATTGG+AGG | + | tig0042275:5631-5650 | Msa1462440:intron | 25.0% |
| ! | CATAACATAACAATATTGGA+GGG | + | tig0042275:5632-5651 | Msa1462440:intron | 25.0% |
| ! | TTGATGCATTTAATTCAACA+AGG | - | tig0042275:5821-5840 | Msa1462440:intergenic | 25.0% |
| ! | AGATTACTTGAACAAACAAT+AGG | + | tig0042275:5882-5901 | Msa1462440:CDS | 25.0% |
| ! | ACTTTGAACTTTAATTCCTT+CGG | - | tig0042275:6033-6052 | Msa1462440:intergenic | 25.0% |
| ! | AAGAAAACTACTTGATATGA+AGG | - | tig0042275:6066-6085 | Msa1462440:intergenic | 25.0% |
| !! | TTCATATCAAGTAGTTTTCT+TGG | + | tig0042275:6065-6084 | Msa1462440:CDS | 25.0% |
| ! | GGATTATAATTCTATAGTCA+TGG | + | tig0042275:6337-6356 | Msa1462440:CDS | 25.0% |
| !!! | TTACGAATGGTTTTTTCTTA+GGG | + | tig0042275:6381-6400 | Msa1462440:CDS | 25.0% |
| ! | TCAATTAAAGGGAAAGTTTA+TGG | + | tig0042275:6425-6444 | Msa1462440:intron | 25.0% |
| ! | TTCCAATTGTGAAATTAGAT+GGG | + | tig0042275:6493-6512 | Msa1462440:intron | 25.0% |
| ! | ATTGATATGAACAATGTGAT+TGG | + | tig0042275:6543-6562 | Msa1462440:CDS | 25.0% |
| !!! | TGGTATGATTTTAAGATCAA+CGG | + | tig0042275:6563-6582 | Msa1462440:CDS | 25.0% |
| !!! | ATGTTTTGGTATTTCCTAAT+AGG | + | tig0042275:6640-6659 | Msa1462440:CDS | 25.0% |
| ! | TGAAAATGACTAATCCTATT+AGG | - | tig0042275:6657-6676 | Msa1462440:intergenic | 25.0% |
| ! | ATATTCATTTCATGCATTAG+AGG | + | tig0042275:6677-6696 | Msa1462440:CDS | 25.0% |
| ! | TATTCATTTCATGCATTAGA+GGG | + | tig0042275:6678-6697 | Msa1462440:CDS | 25.0% |
| !!! | GGTGTTATCATTGATTTTCA+AGG | + | tig0042275:3918-3937 | Msa1462440:CDS | 30.0% |
| !!! | GTTATCATTGATTTTCAAGG+TGG | + | tig0042275:3921-3940 | Msa1462440:CDS | 30.0% |
| ATCAATCAAAGTAGTAAAGG+AGG | - | tig0042275:4038-4057 | Msa1462440:intergenic | 30.0% | |
| TGCATCAATCAAAGTAGTAA+AGG | - | tig0042275:4041-4060 | Msa1462440:intergenic | 30.0% | |
| ! | AGAACTCGAAAAAAGTACAA+GGG | + | tig0042275:4256-4275 | Msa1462440:intron | 30.0% |
| TGGAGTTATTAAGAAATTGC+AGG | - | tig0042275:4697-4716 | Msa1462440:intergenic | 30.0% | |
| TTGAGTGAGACTTAAATTGA+TGG | - | tig0042275:4717-4736 | Msa1462440:intergenic | 30.0% | |
| TCTCACCAAACAATACTAAA+GGG | + | tig0042275:4759-4778 | Msa1462440:intron | 30.0% | |
| !! | GATTTGTTCATTTTCCAACA+AGG | - | tig0042275:4821-4840 | Msa1462440:intergenic | 30.0% |
| ATCAAAAGAAAAGGAATGGA+TGG | - | tig0042275:5579-5598 | Msa1462440:intergenic | 30.0% | |
| !!! | TCTTTTGATGTTTTAGCTCT+TGG | + | tig0042275:5346-5365 | Msa1462440:intron | 30.0% |
| ATTCACATGTGATAAACCAA+AGG | + | tig0042275:5444-5463 | Msa1462440:intron | 30.0% | |
| ATTAAAGTAGATGTGACCTT+TGG | - | tig0042275:5463-5482 | Msa1462440:intergenic | 30.0% | |
| ! | TTTATGGTGTTTTCCAACAA+GGG | + | tig0042275:5485-5504 | Msa1462440:intron | 30.0% |
| ATCAAAAGAAAAGGAATGGA+GGG | + | tig0042275:5579-5598 | Msa1462440:intron | 30.0% | |
| ! | ACTTTTACATCAATGACCAA+AGG | + | tig0042275:5746-5765 | Msa1462440:intron | 30.0% |
| AAATGTTTCAGAAGCTCTTA+AGG | - | tig0042275:5784-5803 | Msa1462440:intergenic | 30.0% | |
| TTGTTCAAGTAATCTGTTGT+TGG | - | tig0042275:5877-5896 | Msa1462440:intergenic | 30.0% | |
| GAAGGAATTAAAGTTCAAAG+TGG | + | tig0042275:6032-6051 | Msa1462440:CDS | 30.0% | |
| TACTTGATATGAAGGTTTCA+TGG | - | tig0042275:6058-6077 | Msa1462440:intergenic | 30.0% | |
| ! | CAAAGGTGAAAGACAATTTT+CGG | + | tig0042275:6112-6131 | Msa1462440:CDS | 30.0% |
| ! | AAAGGTGAAAGACAATTTTC+GGG | + | tig0042275:6113-6132 | Msa1462440:CDS | 30.0% |
| CATTGTTATAACAAAGCAAC+AGG | + | tig0042275:6245-6264 | Msa1462440:CDS | 30.0% | |
| ! | TATAACAAAGCAACAGGTTT+TGG | + | tig0042275:6251-6270 | Msa1462440:CDS | 30.0% |
| ! | GAATTTTGTTGAAGTTAGCA+GGG | + | tig0042275:6282-6301 | Msa1462440:CDS | 30.0% |
| !!! | GTTACGAATGGTTTTTTCTT+AGG | + | tig0042275:6380-6399 | Msa1462440:CDS | 30.0% |
| !!! | TACGAATGGTTTTTTCTTAG+GGG | + | tig0042275:6382-6401 | Msa1462440:CDS | 30.0% |
| GTTCCAATTGTGAAATTAGA+TGG | + | tig0042275:6492-6511 | Msa1462440:intron | 30.0% | |
| TCCAATTGTGAAATTAGATG+GGG | + | tig0042275:6494-6513 | Msa1462440:intron | 30.0% | |
| ATTTAGTGACATTGATCAAG+TGG | + | tig0042275:6518-6537 | Msa1462440:CDS | 30.0% | |
| !!! | ATGATTTTAAGATCAACGGT+TGG | + | tig0042275:6567-6586 | Msa1462440:CDS | 30.0% |
| !! | GGGTGATTTTTCAAATGTTT+TGG | + | tig0042275:6626-6645 | Msa1462440:CDS | 30.0% |
| GTCAAATAATGTTGTAGTTG+TGG | + | tig0042275:6734-6753 | Msa1462440:CDS | 30.0% | |
| GATCTGCACCATACTTAATT+GGG | - | tig0042275:3791-3810 | Msa1462440:intergenic | 35.0% | |
| AGCTTCTACAGCTTTCATAA+TGG | - | tig0042275:3841-3860 | Msa1462440:intergenic | 35.0% | |
| TTAGGGCTTGAATTATTACC+AGG | + | tig0042275:3879-3898 | Msa1462440:CDS | 35.0% | |
| AATCAATGATAACACCTCCA+AGG | - | tig0042275:3914-3933 | Msa1462440:intergenic | 35.0% | |
| CAAAGTAGTAAAGGAGGAAA+AGG | - | tig0042275:4032-4051 | Msa1462440:intergenic | 35.0% | |
| ! | CAGAACTCGAAAAAAGTACA+AGG | + | tig0042275:4255-4274 | Msa1462440:intron | 35.0% |
| !!! | CTCTTAACTTGTTTTCTGGT+GGG | - | tig0042275:4290-4309 | Msa1462440:intergenic | 35.0% |
| !!! | ACTCTTAACTTGTTTTCTGG+TGG | - | tig0042275:4291-4310 | Msa1462440:intergenic | 35.0% |
| !!! | AACCTCAATTTTTTCGTAGC+TGG | + | tig0042275:4355-4374 | Msa1462440:intron | 35.0% |
| TTCCAGCTACGAAAAAATTG+AGG | - | tig0042275:4360-4379 | Msa1462440:intergenic | 35.0% | |
| ! | AGTGGGTTCAAAATTGTTAG+AGG | - | tig0042275:4740-4759 | Msa1462440:intergenic | 35.0% |
| ! | TAGTATTGTTTGGTGAGAGT+GGG | - | tig0042275:4757-4776 | Msa1462440:intergenic | 35.0% |
| ! | TTAGTATTGTTTGGTGAGAG+TGG | - | tig0042275:4758-4777 | Msa1462440:intergenic | 35.0% |
| CTCTCACCAAACAATACTAA+AGG | + | tig0042275:4758-4777 | Msa1462440:intron | 35.0% | |
| CTCACCAAACAATACTAAAG+GGG | + | tig0042275:4760-4779 | Msa1462440:intron | 35.0% | |
| TCACCAAACAATACTAAAGG+GGG | + | tig0042275:4761-4780 | Msa1462440:intron | 35.0% | |
| ! | TTCATTTTCCAACAAGGCTT+TGG | - | tig0042275:4815-4834 | Msa1462440:intergenic | 35.0% |
| GCACAAACCAGACAAAATAA+AGG | + | tig0042275:4955-4974 | Msa1462440:intron | 35.0% | |
| !!! | CAGATCTCCTTTATTTTGTC+TGG | - | tig0042275:4965-4984 | Msa1462440:intergenic | 35.0% |
| ! | TTATCTGTTTTGCACTGCTA+AGG | - | tig0042275:5126-5145 | Msa1462440:intergenic | 35.0% |
| GGATGGAGTAAGATGTTAAA+AGG | - | tig0042275:5318-5337 | Msa1462440:intergenic | 35.0% | |
| ! | GTTTATGGTGTTTTCCAACA+AGG | + | tig0042275:5484-5503 | Msa1462440:intron | 35.0% |
| TTTCTCAAGTTTACCCTTGT+TGG | - | tig0042275:5501-5520 | Msa1462440:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | + | tig0042275:5578-5597 | Msa1462440:intron | 35.0% | |
| CATCAATGACCAAAGGTAAA+TGG | + | tig0042275:5753-5772 | Msa1462440:intron | 35.0% | |
| ! | TGCTTTTGTTGCATTTTGGA+GGG | - | tig0042275:5853-5872 | Msa1462440:intergenic | 35.0% |
| ! | ATGCTTTTGTTGCATTTTGG+AGG | - | tig0042275:5854-5873 | Msa1462440:intergenic | 35.0% |
| ! | TGGATGCTTTTGTTGCATTT+TGG | - | tig0042275:5857-5876 | Msa1462440:intergenic | 35.0% |
| TTGAACTTTAATTCCTTCGG+TGG | - | tig0042275:6030-6049 | Msa1462440:intergenic | 35.0% | |
| TGCTGAGAAAATTGCAACAT+CGG | - | tig0042275:6177-6196 | Msa1462440:intergenic | 35.0% | |
| ! | AGCCATAGGAATTGTTGTTA+GGG | + | tig0042275:6196-6215 | Msa1462440:CDS | 35.0% |
| ! | GGAATTTTGTTGAAGTTAGC+AGG | + | tig0042275:6281-6300 | Msa1462440:CDS | 35.0% |
| TTCGTAACATGAACTTGAAC+AGG | - | tig0042275:6368-6387 | Msa1462440:intergenic | 35.0% | |
| ! | GTTCAAGTTCATGTTACGAA+TGG | + | tig0042275:6368-6387 | Msa1462440:CDS | 35.0% |
| !!! | AATGGTTTTTTCTTAGGGGA+TGG | + | tig0042275:6386-6405 | Msa1462440:CDS | 35.0% |
| CCAATTGTGAAATTAGATGG+GGG | + | tig0042275:6495-6514 | Msa1462440:intron | 35.0% | |
| AAGTTGAATGTGGATGGTAA+TGG | + | tig0042275:6591-6610 | Msa1462440:CDS | 35.0% | |
| ACTGAATGTGCAACAAACTT+TGG | - | tig0042275:6705-6724 | Msa1462440:intergenic | 35.0% | |
| AAAGTGAGAAACCAGTTCAT+GGG | + | tig0042275:6757-6776 | Msa1462440:CDS | 35.0% | |
| GTGGTGTACCCAATTAAGTA+TGG | + | tig0042275:3780-3799 | Msa1462440:CDS | 40.0% | |
| GGATCTGCACCATACTTAAT+TGG | - | tig0042275:3792-3811 | Msa1462440:intergenic | 40.0% | |
| TTACCAGGAATTAGAGACCT+TGG | + | tig0042275:3894-3913 | Msa1462440:CDS | 40.0% | |
| TCCCATCACATTTCCTTCAT+CGG | + | tig0042275:3962-3981 | Msa1462440:CDS | 40.0% | |
| !! | ACCTCGAAGAGGTTGATATA+CGG | + | tig0042275:4383-4402 | Msa1462440:intron | 40.0% |
| TAGCCCCCTTTAGTATTGTT+TGG | - | tig0042275:4767-4786 | Msa1462440:intergenic | 40.0% | |
| !! | ACAAGGCTTTGGATTTCTCA+AGG | - | tig0042275:4804-4823 | Msa1462440:intergenic | 40.0% |
| ! | TGAGAAATCCAAAGCCTTGT+TGG | + | tig0042275:4804-4823 | Msa1462440:intron | 40.0% |
| ! | AGCTCTTGGCACAAGTTTTA+AGG | + | tig0042275:5360-5379 | Msa1462440:intron | 40.0% |
| CAATGACCAAAGGTAAATGG+AGG | + | tig0042275:5756-5775 | Msa1462440:intron | 40.0% | |
| AAGGTTCCTCCATTTACCTT+TGG | - | tig0042275:5765-5784 | Msa1462440:intergenic | 40.0% | |
| ! | TCAACAAGGTGTCTATCAGT+TGG | - | tig0042275:5807-5826 | Msa1462440:intergenic | 40.0% |
| !! | TGTTGCATTTTGGAGGGTTT+TGG | - | tig0042275:5847-5866 | Msa1462440:intergenic | 40.0% |
| TAATTCCTTCGGTGGTGAAA+TGG | - | tig0042275:6022-6041 | Msa1462440:intergenic | 40.0% | |
| ! | CAGCCATAGGAATTGTTGTT+AGG | + | tig0042275:6195-6214 | Msa1462440:CDS | 40.0% |
| ! | GCCATAGGAATTGTTGTTAG+GGG | + | tig0042275:6197-6216 | Msa1462440:CDS | 40.0% |
| TCCCCTAACAACAATTCCTA+TGG | - | tig0042275:6201-6220 | Msa1462440:intergenic | 40.0% | |
| !! | AACAAAGCAACAGGTTTTGG+TGG | + | tig0042275:6254-6273 | Msa1462440:CDS | 40.0% |
| CCCCCATCTAATTTCACAAT+TGG | - | tig0042275:6498-6517 | Msa1462440:intergenic | 40.0% | |
| AACGGTTGGAAAGTTGAATG+TGG | + | tig0042275:6581-6600 | Msa1462440:CDS | 40.0% | |
| GTTGGAAAGTTGAATGTGGA+TGG | + | tig0042275:6585-6604 | Msa1462440:CDS | 40.0% | |
| !! | TGGATGGTAATGGCACAAAA+TGG | + | tig0042275:6601-6620 | Msa1462440:CDS | 40.0% |
| !! | GGATGGTAATGGCACAAAAT+GGG | + | tig0042275:6602-6621 | Msa1462440:CDS | 40.0% |
| GAAAGTGAGAAACCAGTTCA+TGG | + | tig0042275:6756-6775 | Msa1462440:CDS | 40.0% | |
| AAGTGAGAAACCAGTTCATG+GGG | + | tig0042275:6758-6777 | Msa1462440:CDS | 40.0% | |
| AAGTATGGTGCAGATCCAAC+TGG | + | tig0042275:3795-3814 | Msa1462440:CDS | 45.0% | |
| AGTATGGTGCAGATCCAACT+GGG | + | tig0042275:3796-3815 | Msa1462440:CDS | 45.0% | |
| ! | CTGCTTTCATTTTCCCCAGT+TGG | - | tig0042275:3813-3832 | Msa1462440:intergenic | 45.0% |
| GCCGATGAAGGAAATGTGAT+GGG | - | tig0042275:3966-3985 | Msa1462440:intergenic | 45.0% | |
| AGCCGATGAAGGAAATGTGA+TGG | - | tig0042275:3967-3986 | Msa1462440:intergenic | 45.0% | |
| ATCACATTTCCTTCATCGGC+TGG | + | tig0042275:3966-3985 | Msa1462440:CDS | 45.0% | |
| TCCGTATATCAACCTCTTCG+AGG | - | tig0042275:4387-4406 | Msa1462440:intergenic | 45.0% | |
| GTGTTTCCTAGTACGCTTCT+AGG | - | tig0042275:4671-4690 | Msa1462440:intergenic | 45.0% | |
| CTCGGTAACTTGAATCGAAG+AGG | - | tig0042275:5941-5960 | Msa1462440:intergenic | 45.0% | |
| ! | CTCTTCGATTCAAGTTACCG+AGG | + | tig0042275:5939-5958 | Msa1462440:CDS | 45.0% |
| ! | TTCGATTCAAGTTACCGAGG+TGG | + | tig0042275:5942-5961 | Msa1462440:CDS | 45.0% |
| CGATGAATATTCCTCCACCT+CGG | - | tig0042275:5959-5978 | Msa1462440:intergenic | 45.0% | |
| CTTGGACAACACTCAACAGT+CGG | + | tig0042275:6083-6102 | Msa1462440:CDS | 45.0% | |
| ! | GCAATTTTCTCAGCAGCCAT+AGG | + | tig0042275:6182-6201 | Msa1462440:CDS | 45.0% |
| GGACAAGCTAACATGATCAC+AGG | + | tig0042275:6218-6237 | Msa1462440:CDS | 45.0% | |
| !! | GCAACAGGTTTTGGTGGAAT+TGG | + | tig0042275:6260-6279 | Msa1462440:CDS | 45.0% |
| !! | TGGTAATGGCACAAAATGGG+TGG | + | tig0042275:6605-6624 | Msa1462440:CDS | 45.0% |
| ! | GGTAATGGCACAAAATGGGT+GGG | + | tig0042275:6606-6625 | Msa1462440:CDS | 45.0% |
| AAGGAAACAACCCCATGAAC+TGG | - | tig0042275:6771-6790 | Msa1462440:intergenic | 45.0% | |
| !! | AATTTAAATAAAACATTATT+TGG | - | tig0042275:4462-4481 | Msa1462440:intergenic | 5.0% |
| GTATGGTGCAGATCCAACTG+GGG | + | tig0042275:3797-3816 | Msa1462440:CDS | 50.0% | |
| CCTCCAAGGTCTCTAATTCC+TGG | - | tig0042275:3900-3919 | Msa1462440:intergenic | 50.0% | |
| CCAGGAATTAGAGACCTTGG+AGG | + | tig0042275:3897-3916 | Msa1462440:CDS | 50.0% | |
| ACAAGATTGCCAGCCGATGA+AGG | - | tig0042275:3978-3997 | Msa1462440:intergenic | 50.0% | |
| ! | TTCATCGGCTGGCAATCTTG+TGG | + | tig0042275:3977-3996 | Msa1462440:CDS | 50.0% |
| AGCTGGAAAACACCTCGAAG+AGG | + | tig0042275:4372-4391 | Msa1462440:intron | 50.0% | |
| CCTAGTACGCTTCTAGGTAC+AGG | - | tig0042275:4665-4684 | Msa1462440:intergenic | 50.0% | |
| ! | CCTGTACCTAGAAGCGTACT+AGG | + | tig0042275:4662-4681 | Msa1462440:intron | 50.0% |
| ! | GATTCAAGTTACCGAGGTGG+AGG | + | tig0042275:5945-5964 | Msa1462440:CDS | 50.0% |
| TTCCTCCATTTCACCACCGA+AGG | + | tig0042275:6014-6033 | Msa1462440:CDS | 50.0% | |
| TTCCTTCGGTGGTGAAATGG+AGG | - | tig0042275:6019-6038 | Msa1462440:intergenic | 50.0% | |
| GCTTCTAGGTACAGGCTCAC+TGG | - | tig0042275:4657-4676 | Msa1462440:intergenic | 55.0% | |
| GGACAACACTCAACAGTCGG+CGG | + | tig0042275:6086-6105 | Msa1462440:CDS | 55.0% | |
| TCAACAGTCGGCGGAGACAA+AGG | + | tig0042275:6095-6114 | Msa1462440:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042275 | gene | 3762 | 6806 | 3762 | ID=Msa1462440;Name=Msa1462440 |
| tig0042275 | mRNA | 3762 | 6806 | 3762 | ID=Msa1462440-mRNA-1;Parent=Msa1462440;Name=Msa1462440-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.5|0|1|1|1|3|0|390 |
| tig0042275 | exon | 3762 | 3998 | 3762 | ID=Msa1462440-mRNA-1:exon:23648;Parent=Msa1462440-mRNA-1 |
| tig0042275 | exon | 5768 | 6407 | 5768 | ID=Msa1462440-mRNA-1:exon:23649;Parent=Msa1462440-mRNA-1 |
| tig0042275 | exon | 6511 | 6806 | 6511 | ID=Msa1462440-mRNA-1:exon:23650;Parent=Msa1462440-mRNA-1 |
| tig0042275 | CDS | 3762 | 3998 | 3762 | ID=Msa1462440-mRNA-1:cds;Parent=Msa1462440-mRNA-1 |
| tig0042275 | CDS | 5768 | 6407 | 5768 | ID=Msa1462440-mRNA-1:cds;Parent=Msa1462440-mRNA-1 |
| tig0042275 | CDS | 6511 | 6806 | 6511 | ID=Msa1462440-mRNA-1:cds;Parent=Msa1462440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
