Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418830 | sp|Q9FUM1|EF1G_PRUAV | 79.858 | 422 | 81 | 2 | 1 | 418 | 1 | 422 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418830 | A0A072USZ0 | 98.807 | 419 | 4 | 1 | 1 | 418 | 1 | 419 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1380430 | Msa1418830 | -0.816637 | 4.990796e-52 | -8.615850e-47 |
| Msa1418830 | Msa1436670 | 0.888445 | 5.868088e-73 | -8.615850e-47 |
| Msa0608710 | Msa1418830 | -0.803588 | 3.245563e-49 | -8.615850e-47 |
| Msa0137710 | Msa1418830 | 0.810845 | 9.414340e-51 | -8.615850e-47 |
| Msa0233610 | Msa1418830 | -0.801528 | 8.627634e-49 | -8.615850e-47 |
| Msa1225150 | Msa1418830 | 0.968759 | 3.890938e-129 | -8.615850e-47 |
| Msa0379410 | Msa1418830 | -0.800184 | 1.623418e-48 | -8.615850e-47 |
| Msa1119110 | Msa1418830 | -0.817575 | 3.070997e-52 | -8.615850e-47 |
| Msa1119210 | Msa1418830 | -0.818393 | 2.007113e-52 | -8.615850e-47 |
| Msa0555200 | Msa1418830 | -0.804042 | 2.611323e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418830 | MtrunA17_Chr0c12g0493651 | 98.807 | 419 | 4 | 1 | 1 | 418 | 1 | 419 | 0.0 | 853 |
| Msa1418830 | MtrunA17_Chr3g0102331 | 81.384 | 419 | 77 | 1 | 1 | 418 | 1 | 419 | 0.0 | 716 |
| Msa1418830 | MtrunA17_Chr2g0276951 | 83.014 | 418 | 68 | 2 | 2 | 418 | 3 | 418 | 0.0 | 698 |
| Msa1418830 | MtrunA17_Chr4g0077001 | 56.119 | 335 | 56 | 7 | 1 | 333 | 1 | 246 | 3.12e-110 | 324 |
| Msa1418830 | MtrunA17_Chr4g0077011 | 98.462 | 65 | 1 | 0 | 344 | 408 | 1 | 65 | 2.62e-41 | 142 |
| Msa1418830 | MtrunA17_Chr1g0195831 | 25.991 | 227 | 145 | 5 | 1 | 212 | 1 | 219 | 1.15e-12 | 67.0 |
| Msa1418830 | MtrunA17_Chr1g0157211 | 29.139 | 151 | 97 | 4 | 26 | 167 | 28 | 177 | 2.31e-11 | 63.2 |
| Msa1418830 | MtrunA17_Chr3g0109891 | 33.333 | 132 | 73 | 4 | 40 | 160 | 40 | 167 | 3.00e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418830 | AT1G09640.1 | 75.418 | 419 | 97 | 3 | 1 | 418 | 1 | 414 | 0.0 | 635 |
| Msa1418830 | AT1G57720.1 | 75.179 | 419 | 97 | 4 | 1 | 418 | 1 | 413 | 0.0 | 621 |
| Msa1418830 | AT1G57720.2 | 75.179 | 419 | 97 | 4 | 1 | 418 | 1 | 413 | 0.0 | 621 |
| Msa1418830 | AT1G09640.2 | 69.118 | 204 | 62 | 1 | 1 | 203 | 1 | 204 | 1.99e-97 | 292 |
| Msa1418830 | AT1G09640.2 | 84.932 | 73 | 10 | 1 | 347 | 418 | 193 | 265 | 4.97e-35 | 130 |
| Msa1418830 | AT3G62760.1 | 25.463 | 216 | 138 | 6 | 1 | 201 | 1 | 208 | 1.33e-12 | 67.4 |
| Msa1418830 | AT2G30870.1 | 31.387 | 137 | 77 | 4 | 36 | 160 | 35 | 166 | 1.66e-12 | 67.0 |
Find 122 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTATCTTGCAGGATTT+TGG | 0.085089 | tig0024643:+51315 | Msa1418830:intron |
| CTCTTCTTCTGCTTCTTCTT+TGG | 0.092984 | tig0024643:-50521 | None:intergenic |
| CATTCATCCATCACAAATTT+AGG | 0.098053 | tig0024643:-51551 | None:intergenic |
| CACAACCCCTTTACCTTAAA+AGG | 0.198539 | tig0024643:-51506 | None:intergenic |
| TTTGAGCGGCGGAGTGATTT+AGG | 0.215862 | tig0024643:-48610 | None:intergenic |
| GGGATTCTTGGGTTTGGGCT+TGG | 0.216459 | tig0024643:-50548 | None:intergenic |
| TCACTTACCAAAGCCATATT+AGG | 0.216629 | tig0024643:-48803 | None:intergenic |
| TCTTCTTCTGCTTCTTCTTT+GGG | 0.226224 | tig0024643:-50520 | None:intergenic |
| GGATTCTTGGGTTTGGGCTT+GGG | 0.239221 | tig0024643:-50547 | None:intergenic |
| ATCAATTAGATTCTTCATTC+TGG | 0.242038 | tig0024643:+48895 | Msa1418830:intron |
| AGAGACACCCATCTCAAAAT+TGG | 0.270995 | tig0024643:-48989 | None:intergenic |
| CCAAACTTCCGCAAGATATT+AGG | 0.289841 | tig0024643:+50373 | Msa1418830:CDS |
| TCTCCCGCTCCCTCGTTTGA+TGG | 0.291388 | tig0024643:+51915 | Msa1418830:three_prime_UTR |
| TGTATGAAAATTAAAATTCA+TGG | 0.299742 | tig0024643:+51881 | Msa1418830:three_prime_UTR |
| TTAGCCCGCAAGTATGCTTT+TGG | 0.302747 | tig0024643:+51455 | Msa1418830:CDS |
| ATTCATCCATCACAAATTTA+GGG | 0.306943 | tig0024643:-51550 | None:intergenic |
| CCTAATATCTTGCGGAAGTT+TGG | 0.312009 | tig0024643:-50373 | None:intergenic |
| AAGAAGATCAAGGGGATTCT+TGG | 0.325325 | tig0024643:-50560 | None:intergenic |
| ATCAAGGGGATTCTTGGGTT+TGG | 0.332225 | tig0024643:-50554 | None:intergenic |
| CTCTATCCAAGATTGGGATA+TGG | 0.336268 | tig0024643:+49328 | Msa1418830:CDS |
| GGTAAACGACGAACCCAAAA+AGG | 0.338365 | tig0024643:+50474 | Msa1418830:CDS |
| TCAAGGGGATTCTTGGGTTT+GGG | 0.341781 | tig0024643:-50553 | None:intergenic |
| TTGAGCGGCGGAGTGATTTA+GGG | 0.357016 | tig0024643:-48609 | None:intergenic |
| TTCCCAGCCTAAAGATTCTA+AGG | 0.359278 | tig0024643:+50447 | Msa1418830:CDS |
| GCTGAAGAGATTGCAATTAC+TGG | 0.361731 | tig0024643:+50160 | Msa1418830:CDS |
| ATCCTGAAGGGTACTCTCTC+TGG | 0.365424 | tig0024643:+51348 | Msa1418830:CDS |
| TCTTTCCTATCTCAGTTTCA+TGG | 0.369699 | tig0024643:+51778 | Msa1418830:three_prime_UTR |
| CTCTCAAAGACAGGACCATC+AGG | 0.372688 | tig0024643:-49072 | None:intergenic |
| TCTATCCAAGATTGGGATAT+GGG | 0.385860 | tig0024643:+49329 | Msa1418830:CDS |
| AAGCATTCAAAGCTCTCTTC+AGG | 0.386435 | tig0024643:-50183 | None:intergenic |
| CTCCCGCTCCCTCGTTTGAT+GGG | 0.391295 | tig0024643:+51916 | Msa1418830:three_prime_UTR |
| CTTTCCAAAAGCATACTTGC+GGG | 0.392465 | tig0024643:-51459 | None:intergenic |
| TCCTCCAAGCAAGATGATAC+TGG | 0.393435 | tig0024643:+50582 | Msa1418830:CDS |
| TCTTGGCAAGGTTCCTGTCT+TGG | 0.398617 | tig0024643:+49044 | Msa1418830:CDS |
| GAGACACCCATCTCAAAATT+GGG | 0.399343 | tig0024643:-48988 | None:intergenic |
| AGTCCAGATCGACCCTAATA+TGG | 0.401910 | tig0024643:+48790 | Msa1418830:exon |
| CTCAACAACAACACCTTGTA+TGG | 0.403217 | tig0024643:+49123 | Msa1418830:CDS |
| CTCATGTCGAGAGATACTTT+TGG | 0.403977 | tig0024643:+50335 | Msa1418830:CDS |
| CAGCTTCAGCCTGCTTGACT+TGG | 0.404975 | tig0024643:-50396 | None:intergenic |
| TAAACCCCATATCCCAATCT+TGG | 0.413330 | tig0024643:-49334 | None:intergenic |
| AGAAGATCAAGGGGATTCTT+GGG | 0.421200 | tig0024643:-50559 | None:intergenic |
| CAAGTGGCTCTATCCAAGAT+TGG | 0.421551 | tig0024643:+49321 | Msa1418830:CDS |
| AACCAGAGAGAGTACCCTTC+AGG | 0.429409 | tig0024643:-51350 | None:intergenic |
| CACTTACCAAAGCCATATTA+GGG | 0.456447 | tig0024643:-48802 | None:intergenic |
| CATATCAGATGAAGCTCAAA+AGG | 0.457442 | tig0024643:+51610 | Msa1418830:CDS |
| GATCGACCCTAATATGGCTT+TGG | 0.467819 | tig0024643:+48796 | Msa1418830:exon |
| AAGCCATATTAGGGTCGATC+TGG | 0.471652 | tig0024643:-48793 | None:intergenic |
| TGGCCTTAGAATCTTTAGGC+TGG | 0.476785 | tig0024643:-50450 | None:intergenic |
| CAAAGAAGAAGCAGAAGAAG+AGG | 0.479600 | tig0024643:+50522 | Msa1418830:CDS |
| GCCTCCAATACTTACCTAGT+TGG | 0.484176 | tig0024643:+50220 | Msa1418830:CDS |
| AAGTGGCTCTATCCAAGATT+GGG | 0.485075 | tig0024643:+49322 | Msa1418830:CDS |
| TTTGGGTTCGTCGTTTACCT+TGG | 0.489504 | tig0024643:-50470 | None:intergenic |
| CCATCAGGGGTTTCCAAGAC+AGG | 0.490090 | tig0024643:-49057 | None:intergenic |
| CCCTCGTTTGATGGGTTCGA+AGG | 0.495154 | tig0024643:+51924 | Msa1418830:three_prime_UTR |
| ACGACATGCAATTTGTATGT+TGG | 0.496799 | tig0024643:+50271 | Msa1418830:CDS |
| TGGTGGATTTCTTCAGCGGA+TGG | 0.498176 | tig0024643:+51430 | Msa1418830:CDS |
| GCAAGATGATACTGGATGAC+TGG | 0.502140 | tig0024643:+50590 | Msa1418830:CDS |
| TTAGAATCTTTAGGCTGGGA+AGG | 0.503743 | tig0024643:-50445 | None:intergenic |
| ACCTTGGCCTTAGAATCTTT+AGG | 0.503994 | tig0024643:-50454 | None:intergenic |
| TTCTTCCATGAAACTGAGAT+AGG | 0.507958 | tig0024643:-51783 | None:intergenic |
| TCCAGTATCATCTTGCTTGG+AGG | 0.510179 | tig0024643:-50583 | None:intergenic |
| TCATCCAGTATCATCTTGCT+TGG | 0.513427 | tig0024643:-50586 | None:intergenic |
| TTTCTCGACATGAATCCTCT+TGG | 0.518699 | tig0024643:+49027 | Msa1418830:CDS |
| ATAGCATTGCTCTCAAAGAC+AGG | 0.521702 | tig0024643:-49081 | None:intergenic |
| GCCTAAAGATTCTAAGGCCA+AGG | 0.527634 | tig0024643:+50453 | Msa1418830:CDS |
| GTGGCCAACTAGGTAAGTAT+TGG | 0.528399 | tig0024643:-50224 | None:intergenic |
| TTCAGAGAGGTTGCTATCAA+AGG | 0.531471 | tig0024643:+50643 | Msa1418830:CDS |
| GATATTAGGCCAAGTCAAGC+AGG | 0.533721 | tig0024643:+50387 | Msa1418830:CDS |
| GCCAACTAGGTAAGTATTGG+AGG | 0.535307 | tig0024643:-50221 | None:intergenic |
| CCTGTCTTGGAAACCCCTGA+TGG | 0.535349 | tig0024643:+49057 | Msa1418830:CDS |
| AACCCATCAAACGAGGGAGC+GGG | 0.536659 | tig0024643:-51918 | None:intergenic |
| GGATTCATGTCGAGAAATTG+AGG | 0.540187 | tig0024643:-49021 | None:intergenic |
| AGAGAAGACTTACTGGAGGA+AGG | 0.545703 | tig0024643:-49357 | None:intergenic |
| GGCCTTAGAATCTTTAGGCT+GGG | 0.546742 | tig0024643:-50449 | None:intergenic |
| AGAAATCCCTAAATTTGTGA+TGG | 0.546910 | tig0024643:+51544 | Msa1418830:CDS |
| ATGTCGTTATGATGTCAGCC+AGG | 0.547555 | tig0024643:-50255 | None:intergenic |
| GGGTGACAGAGTGGCCAACT+AGG | 0.557957 | tig0024643:-50234 | None:intergenic |
| CGACATGAATCCTCTTGGCA+AGG | 0.562703 | tig0024643:+49032 | Msa1418830:CDS |
| ATGACATGGAGCTGTATGAA+TGG | 0.563205 | tig0024643:+51576 | Msa1418830:CDS |
| CCACAAAAGTGAAATTTGCA+AGG | 0.563752 | tig0024643:+51720 | Msa1418830:three_prime_UTR |
| GAACCCATCAAACGAGGGAG+CGG | 0.568904 | tig0024643:-51919 | None:intergenic |
| CTAGGTAAGTATTGGAGGCA+AGG | 0.570319 | tig0024643:-50216 | None:intergenic |
| TTTGGAAAGATGCTTGTGAT+CGG | 0.574318 | tig0024643:+51473 | Msa1418830:CDS |
| TGCTTGGAGGAAGAAGATCA+AGG | 0.574810 | tig0024643:-50570 | None:intergenic |
| GCTTGGAGGAAGAAGATCAA+GGG | 0.576087 | tig0024643:-50569 | None:intergenic |
| ATTTAGGGATTTCTTGCCCA+CGG | 0.579224 | tig0024643:-51535 | None:intergenic |
| TGGGACATGTATGATCCTGA+AGG | 0.580791 | tig0024643:+51335 | Msa1418830:CDS |
| GTGACATTGAACAAGGTTGG+TGG | 0.584238 | tig0024643:+51413 | Msa1418830:CDS |
| GGCTTCTTTGCAGATTGAAG+AGG | 0.584689 | tig0024643:-50424 | None:intergenic |
| TTTGTGACATTGAACAAGGT+TGG | 0.585414 | tig0024643:+51410 | Msa1418830:CDS |
| AGGTTGGTGGATTTCTTCAG+CGG | 0.591058 | tig0024643:+51426 | Msa1418830:CDS |
| TGACTTGGCCTAATATCTTG+CGG | 0.591227 | tig0024643:-50381 | None:intergenic |
| TCTTTCCAAAAGCATACTTG+CGG | 0.593669 | tig0024643:-51460 | None:intergenic |
| ACAGAGGCAGTTAGTTTGAG+CGG | 0.595305 | tig0024643:-48624 | None:intergenic |
| TTGATTCTAATATTAACAAG+TGG | 0.595616 | tig0024643:+49305 | Msa1418830:CDS |
| GAAGTTTGGCTGATTGACCA+AGG | 0.597999 | tig0024643:-50359 | None:intergenic |
| AGTTGGCCACTCTGTCACCC+TGG | 0.598292 | tig0024643:+50237 | Msa1418830:CDS |
| TTCAGGCTCACATTGAACAA+TGG | 0.606079 | tig0024643:+49260 | Msa1418830:intron |
| CTATCCAAGATTGGGATATG+GGG | 0.607195 | tig0024643:+49330 | Msa1418830:CDS |
| GGGACATGTATGATCCTGAA+GGG | 0.608052 | tig0024643:+51336 | Msa1418830:CDS |
| GAGGCAGTTAGTTTGAGCGG+CGG | 0.611667 | tig0024643:-48621 | None:intergenic |
| AATATTAGAATCAATCTCCA+AGG | 0.612021 | tig0024643:-49296 | None:intergenic |
| CAAAAGTATCTCTCGACATG+AGG | 0.612573 | tig0024643:-50334 | None:intergenic |
| AGACACCCATCTCAAAATTG+GGG | 0.615532 | tig0024643:-48987 | None:intergenic |
| AATCAAAGAAGAACCATACA+AGG | 0.618859 | tig0024643:-49136 | None:intergenic |
| TCTCAAAGACAGGACCATCA+GGG | 0.621025 | tig0024643:-49071 | None:intergenic |
| CTTGGAGGAAGAAGATCAAG+GGG | 0.623330 | tig0024643:-50568 | None:intergenic |
| CTCAAAGACAGGACCATCAG+GGG | 0.627628 | tig0024643:-49070 | None:intergenic |
| TTCCTTTGTGACATTGAACA+AGG | 0.627797 | tig0024643:+51406 | Msa1418830:CDS |
| ACCTTCGAACCCATCAAACG+AGG | 0.636241 | tig0024643:-51925 | None:intergenic |
| AACCCCTTTACCTTAAAAGG+TGG | 0.642602 | tig0024643:-51503 | None:intergenic |
| AAGCACTTGGCATCCAACAG+AGG | 0.653957 | tig0024643:-51680 | None:intergenic |
| AAGACAGGAACCTTGCCAAG+AGG | 0.659474 | tig0024643:-49042 | None:intergenic |
| TGTCAGCCAGGGTGACAGAG+TGG | 0.662886 | tig0024643:-50243 | None:intergenic |
| AACCTTGTTCAATGTCACAA+AGG | 0.664832 | tig0024643:-51408 | None:intergenic |
| GTAAATCGCATAGCAGTGAG+AGG | 0.665176 | tig0024643:+48578 | Msa1418830:five_prime_UTR |
| CCTTCGAACCCATCAAACGA+GGG | 0.678607 | tig0024643:-51924 | None:intergenic |
| CTCGACATGAGGAAACTCTG+AGG | 0.687154 | tig0024643:-50323 | None:intergenic |
| TGTCGTTATGATGTCAGCCA+GGG | 0.694507 | tig0024643:-50254 | None:intergenic |
| GACACCCATCTCAAAATTGG+GGG | 0.700541 | tig0024643:-48986 | None:intergenic |
| GGAGCTGTATGAATGGACAA+AGG | 0.712876 | tig0024643:+51583 | Msa1418830:CDS |
| GATGGATGAATGCTATGACA+TGG | 0.718496 | tig0024643:+51562 | Msa1418830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTAATTGATTTGATAATTA+GGG | - | tig0024643:48885-48904 | None:intergenic | 15.0% |
| !!! | ATCTAATTGATTTGATAATT+AGG | - | tig0024643:48886-48905 | None:intergenic | 15.0% |
| !!! | TTAAACAAGTGAATATATTT+TGG | + | tig0024643:49669-49688 | Msa1418830:intron | 15.0% |
| !! | GTAGCTAAATATATATTATT+GGG | + | tig0024643:49735-49754 | Msa1418830:intron | 15.0% |
| !! | TCAAAGAAAAAAATATTTGT+TGG | + | tig0024643:49787-49806 | Msa1418830:intron | 15.0% |
| !! | CAAAGAAAAAAATATTTGTT+GGG | + | tig0024643:49788-49807 | Msa1418830:intron | 15.0% |
| !!! | AAAGAAAAAAATATTTGTTG+GGG | + | tig0024643:49789-49808 | Msa1418830:intron | 15.0% |
| !! | AAATAACATATGCAAATATA+AGG | + | tig0024643:50881-50900 | Msa1418830:intron | 15.0% |
| !! | TGTATGAAAATTAAAATTCA+TGG | + | tig0024643:51881-51900 | Msa1418830:three_prime_UTR | 15.0% |
| !!! | GTATTTTGTTAAATTAAAAG+CGG | + | tig0024643:51946-51965 | Msa1418830:three_prime_UTR | 15.0% |
| !! | TTGATTCTAATATTAACAAG+TGG | + | tig0024643:49305-49324 | Msa1418830:CDS | 20.0% |
| !!! | TTTAAAATAAGTTTGGGATA+CGG | - | tig0024643:49459-49478 | None:intergenic | 20.0% |
| !! | GGTAGCTAAATATATATTAT+TGG | + | tig0024643:49734-49753 | Msa1418830:intron | 20.0% |
| !! | TTGAAAACAATAACATCAAA+GGG | - | tig0024643:50685-50704 | None:intergenic | 20.0% |
| !! | ATTGAAAACAATAACATCAA+AGG | - | tig0024643:50686-50705 | None:intergenic | 20.0% |
| !! | AAAAATGAAAAAAATCAGCT+TGG | + | tig0024643:51154-51173 | Msa1418830:intron | 20.0% |
| !! | AAAATGAAAAAAATCAGCTT+GGG | + | tig0024643:51155-51174 | Msa1418830:intron | 20.0% |
| !!! | GATTTTTATAAGACATACAT+AGG | + | tig0024643:51276-51295 | Msa1418830:intron | 20.0% |
| !! | TTGATTTGATAATTAGGGTT+AGG | - | tig0024643:48880-48899 | None:intergenic | 25.0% |
| ! | ATCAATTAGATTCTTCATTC+TGG | + | tig0024643:48895-48914 | Msa1418830:intron | 25.0% |
| ! | AATCAACAAAAATGCTTACA+AGG | + | tig0024643:48921-48940 | Msa1418830:CDS | 25.0% |
| ! | AATATTAGAATCAATCTCCA+AGG | - | tig0024643:49299-49318 | None:intergenic | 25.0% |
| ! | TGTCAAAAATCAGTAGAAAT+AGG | - | tig0024643:49699-49718 | None:intergenic | 25.0% |
| !! | TTGACAAATAAACTCTTTTG+CGG | + | tig0024643:49713-49732 | Msa1418830:intron | 25.0% |
| ! | TCATAGAAATAAACCAACTT+GGG | - | tig0024643:49906-49925 | None:intergenic | 25.0% |
| ! | TTCATAGAAATAAACCAACT+TGG | - | tig0024643:49907-49926 | None:intergenic | 25.0% |
| ! | TAAAGTATATGTGTCAGATT+TGG | - | tig0024643:49966-49985 | None:intergenic | 25.0% |
| ! | TTAATTATTTGTCTGGATGA+AGG | + | tig0024643:50138-50157 | Msa1418830:intron | 25.0% |
| ! | TGAAAACAATAACATCAAAG+GGG | - | tig0024643:50684-50703 | None:intergenic | 25.0% |
| !!! | TTATGTGTGTTTGTTGTTAT+GGG | - | tig0024643:50913-50932 | None:intergenic | 25.0% |
| ! | CTATGAGTACCAAATATTTA+GGG | - | tig0024643:50936-50955 | None:intergenic | 25.0% |
| ! | ACTATGAGTACCAAATATTT+AGG | - | tig0024643:50937-50956 | None:intergenic | 25.0% |
| ! | GAAATCATATGTAGAAATCA+TGG | - | tig0024643:51046-51065 | None:intergenic | 25.0% |
| ! | TCAGTTCAATGTTTCATATA+TGG | + | tig0024643:51125-51144 | Msa1418830:intron | 25.0% |
| ! | TTCAATGTTTCATATATGGA+GGG | + | tig0024643:51129-51148 | Msa1418830:intron | 25.0% |
| ! | AATTTCACAATGTACAATCA+GGG | - | tig0024643:51222-51241 | None:intergenic | 25.0% |
| ! | AAATTTCACAATGTACAATC+AGG | - | tig0024643:51223-51242 | None:intergenic | 25.0% |
| ! | ATTGTACATTGTGAAATTTG+CGG | + | tig0024643:51224-51243 | Msa1418830:intron | 25.0% |
| ! | ATTCATCCATCACAAATTTA+GGG | - | tig0024643:51553-51572 | None:intergenic | 25.0% |
| GATGAATGAAAAGAGTAGTA+GGG | - | tig0024643:48831-48850 | None:intergenic | 30.0% | |
| AATCAAAGAAGAACCATACA+AGG | - | tig0024643:49139-49158 | None:intergenic | 30.0% | |
| !! | ATGGATTGATTTTTCATCCT+TGG | + | tig0024643:49279-49298 | Msa1418830:CDS | 30.0% |
| !! | TGGTTTATTTCTATGAAGCA+CGG | + | tig0024643:49910-49929 | Msa1418830:intron | 30.0% |
| ! | TGATTTTCTCACATTGTTAG+CGG | + | tig0024643:49998-50017 | Msa1418830:intron | 30.0% |
| GTAAATAAACCTATGAAGCA+CGG | - | tig0024643:50061-50080 | None:intergenic | 30.0% | |
| CCAGACAAATAATTAAGATC+AGG | - | tig0024643:50134-50153 | None:intergenic | 30.0% | |
| CCTGATCTTAATTATTTGTC+TGG | + | tig0024643:50131-50150 | Msa1418830:intron | 30.0% | |
| GAAAACAATAACATCAAAGG+GGG | - | tig0024643:50683-50702 | None:intergenic | 30.0% | |
| !! | GTTATGTGTGTTTGTTGTTA+TGG | - | tig0024643:50914-50933 | None:intergenic | 30.0% |
| CACACATAACCCTAAATATT+TGG | + | tig0024643:50924-50943 | Msa1418830:intron | 30.0% | |
| !! | AGAAAAGAAAAGTATTGCAG+CGG | - | tig0024643:50973-50992 | None:intergenic | 30.0% |
| TGTAGAAATCATGGTAAGAA+AGG | - | tig0024643:51037-51056 | None:intergenic | 30.0% | |
| ! | GATTTCTTCTTCTTTTCTAC+TGG | + | tig0024643:51060-51079 | Msa1418830:intron | 30.0% |
| GTTCAATGTTTCATATATGG+AGG | + | tig0024643:51128-51147 | Msa1418830:intron | 30.0% | |
| ATTTCACAATGTACAATCAG+GGG | - | tig0024643:51221-51240 | None:intergenic | 30.0% | |
| TTTAAATCCTTCTATCTTGC+AGG | + | tig0024643:51308-51327 | Msa1418830:intron | 30.0% | |
| AGAAATCCCTAAATTTGTGA+TGG | + | tig0024643:51544-51563 | Msa1418830:CDS | 30.0% | |
| CATTCATCCATCACAAATTT+AGG | - | tig0024643:51554-51573 | None:intergenic | 30.0% | |
| ! | TGAAGATTTTGAACCTTTTG+AGG | + | tig0024643:51652-51671 | Msa1418830:CDS | 30.0% |
| ! | GAAGATTTTGAACCTTTTGA+GGG | + | tig0024643:51653-51672 | Msa1418830:CDS | 30.0% |
| ! | AAGATTTTGAACCTTTTGAG+GGG | + | tig0024643:51654-51673 | Msa1418830:CDS | 30.0% |
| ! | AAAAATTCACTTGAAGCACT+TGG | - | tig0024643:51696-51715 | None:intergenic | 30.0% |
| ! | CGAAGAGATTTTACTTACAG+AGG | - | tig0024643:48643-48662 | None:intergenic | 35.0% |
| CTGTAAGTAAAATCTCTTCG+CGG | + | tig0024643:48643-48662 | Msa1418830:intron | 35.0% | |
| CACTTACCAAAGCCATATTA+GGG | - | tig0024643:48805-48824 | None:intergenic | 35.0% | |
| TCACTTACCAAAGCCATATT+AGG | - | tig0024643:48806-48825 | None:intergenic | 35.0% | |
| GGATGAATGAAAAGAGTAGT+AGG | - | tig0024643:48832-48851 | None:intergenic | 35.0% | |
| ATTAGATCAGATCGATGAAG+TGG | - | tig0024643:48853-48872 | None:intergenic | 35.0% | |
| TTGATTCATTCTCTGCATTC+AGG | + | tig0024643:49243-49262 | Msa1418830:intron | 35.0% | |
| TCTATCCAAGATTGGGATAT+GGG | + | tig0024643:49329-49348 | Msa1418830:CDS | 35.0% | |
| TCAGTGTATGGAAAATGTTG+AGG | - | tig0024643:49383-49402 | None:intergenic | 35.0% | |
| TCTAAATCGAGTTCAGTGTA+TGG | - | tig0024643:49395-49414 | None:intergenic | 35.0% | |
| TTAAGATTCTCTGACATGAG+GGG | - | tig0024643:49850-49869 | None:intergenic | 35.0% | |
| CTTAAGATTCTCTGACATGA+GGG | - | tig0024643:49851-49870 | None:intergenic | 35.0% | |
| TCTTAAGATTCTCTGACATG+AGG | - | tig0024643:49852-49871 | None:intergenic | 35.0% | |
| ACGACATGCAATTTGTATGT+TGG | + | tig0024643:50271-50290 | Msa1418830:CDS | 35.0% | |
| TCTTCTTCTGCTTCTTCTTT+GGG | - | tig0024643:50523-50542 | None:intergenic | 35.0% | |
| CACTAAAAACAACTTCAGAG+AGG | + | tig0024643:50630-50649 | Msa1418830:CDS | 35.0% | |
| ! | TCAATTTTGTGATTGTACGC+AGG | + | tig0024643:50701-50720 | Msa1418830:intron | 35.0% |
| ! | CAATTTTGTGATTGTACGCA+GGG | + | tig0024643:50702-50721 | Msa1418830:intron | 35.0% |
| ! | AATTTTGTGATTGTACGCAG+GGG | + | tig0024643:50703-50722 | Msa1418830:intron | 35.0% |
| CAAAATTCACTCGCTACAAA+CGG | - | tig0024643:50821-50840 | None:intergenic | 35.0% | |
| TCTTTCTTCTTACAGTTCCA+TGG | + | tig0024643:50996-51015 | Msa1418830:intron | 35.0% | |
| GGAAAAAGATGAAGAAACCA+TGG | - | tig0024643:51016-51035 | None:intergenic | 35.0% | |
| ! | CTTCTATCTTGCAGGATTTT+GGG | + | tig0024643:51316-51335 | Msa1418830:intron | 35.0% |
| TTCCTTTGTGACATTGAACA+AGG | + | tig0024643:51406-51425 | Msa1418830:CDS | 35.0% | |
| AACCTTGTTCAATGTCACAA+AGG | - | tig0024643:51411-51430 | None:intergenic | 35.0% | |
| TTTGTGACATTGAACAAGGT+TGG | + | tig0024643:51410-51429 | Msa1418830:CDS | 35.0% | |
| ! | TCTTTCCAAAAGCATACTTG+CGG | - | tig0024643:51463-51482 | None:intergenic | 35.0% |
| TTTGGAAAGATGCTTGTGAT+CGG | + | tig0024643:51473-51492 | Msa1418830:CDS | 35.0% | |
| CATATCAGATGAAGCTCAAA+AGG | + | tig0024643:51610-51629 | Msa1418830:CDS | 35.0% | |
| !! | AGATTTTGAACCTTTTGAGG+GGG | + | tig0024643:51655-51674 | Msa1418830:CDS | 35.0% |
| !! | CCTTGCAAATTTCACTTTTG+TGG | - | tig0024643:51723-51742 | None:intergenic | 35.0% |
| CCACAAAAGTGAAATTTGCA+AGG | + | tig0024643:51720-51739 | Msa1418830:three_prime_UTR | 35.0% | |
| TCTTTCCTATCTCAGTTTCA+TGG | + | tig0024643:51778-51797 | Msa1418830:three_prime_UTR | 35.0% | |
| TTCTTCCATGAAACTGAGAT+AGG | - | tig0024643:51786-51805 | None:intergenic | 35.0% | |
| AATTGGGGGTCAATTGAAGT+TGG | - | tig0024643:48975-48994 | None:intergenic | 40.0% | |
| !! | ATTGACCCCCAATTTTGAGA+TGG | + | tig0024643:48981-49000 | Msa1418830:CDS | 40.0% |
| !!! | TTGACCCCCAATTTTGAGAT+GGG | + | tig0024643:48982-49001 | Msa1418830:CDS | 40.0% |
| AGACACCCATCTCAAAATTG+GGG | - | tig0024643:48990-49009 | None:intergenic | 40.0% | |
| GAGACACCCATCTCAAAATT+GGG | - | tig0024643:48991-49010 | None:intergenic | 40.0% | |
| AGAGACACCCATCTCAAAAT+TGG | - | tig0024643:48992-49011 | None:intergenic | 40.0% | |
| GGATTCATGTCGAGAAATTG+AGG | - | tig0024643:49024-49043 | None:intergenic | 40.0% | |
| TTTCTCGACATGAATCCTCT+TGG | + | tig0024643:49027-49046 | Msa1418830:CDS | 40.0% | |
| ATAGCATTGCTCTCAAAGAC+AGG | - | tig0024643:49084-49103 | None:intergenic | 40.0% | |
| CTCAACAACAACACCTTGTA+TGG | + | tig0024643:49123-49142 | Msa1418830:CDS | 40.0% | |
| TTCAGGCTCACATTGAACAA+TGG | + | tig0024643:49260-49279 | Msa1418830:intron | 40.0% | |
| ! | AAGTGGCTCTATCCAAGATT+GGG | + | tig0024643:49322-49341 | Msa1418830:CDS | 40.0% |
| CTCTATCCAAGATTGGGATA+TGG | + | tig0024643:49328-49347 | Msa1418830:CDS | 40.0% | |
| CTATCCAAGATTGGGATATG+GGG | + | tig0024643:49330-49349 | Msa1418830:CDS | 40.0% | |
| TAAACCCCATATCCCAATCT+TGG | - | tig0024643:49337-49356 | None:intergenic | 40.0% | |
| ! | AATAAGTTTGGGATACGGTG+TGG | - | tig0024643:49454-49473 | None:intergenic | 40.0% |
| AAGCTAGCTATGTTTCCACA+AGG | + | tig0024643:49521-49540 | Msa1418830:intron | 40.0% | |
| AGCTAGCTATGTTTCCACAA+GGG | + | tig0024643:49522-49541 | Msa1418830:intron | 40.0% | |
| ATTTAAATTTGGCCCCCTTG+TGG | - | tig0024643:49539-49558 | None:intergenic | 40.0% | |
| ! | CGAAGCTATTTGTTGCCAAA+GGG | - | tig0024643:49827-49846 | None:intergenic | 40.0% |
| CTTGGGTGAAGTATATGTGT+CGG | - | tig0024643:49889-49908 | None:intergenic | 40.0% | |
| CACATATACTTCACCCAAGT+TGG | + | tig0024643:49890-49909 | Msa1418830:intron | 40.0% | |
| AAACCTATGAAGCACGGATA+CGG | - | tig0024643:50055-50074 | None:intergenic | 40.0% | |
| GCTGAAGAGATTGCAATTAC+TGG | + | tig0024643:50160-50179 | Msa1418830:CDS | 40.0% | |
| AAGCATTCAAAGCTCTCTTC+AGG | - | tig0024643:50186-50205 | None:intergenic | 40.0% | |
| !! | CAAAAGTATCTCTCGACATG+AGG | - | tig0024643:50337-50356 | None:intergenic | 40.0% |
| ! | CTCATGTCGAGAGATACTTT+TGG | + | tig0024643:50335-50354 | Msa1418830:CDS | 40.0% |
| CCTAATATCTTGCGGAAGTT+TGG | - | tig0024643:50376-50395 | None:intergenic | 40.0% | |
| CCAAACTTCCGCAAGATATT+AGG | + | tig0024643:50373-50392 | Msa1418830:CDS | 40.0% | |
| ! | TGACTTGGCCTAATATCTTG+CGG | - | tig0024643:50384-50403 | None:intergenic | 40.0% |
| TTAGAATCTTTAGGCTGGGA+AGG | - | tig0024643:50448-50467 | None:intergenic | 40.0% | |
| TTCCCAGCCTAAAGATTCTA+AGG | + | tig0024643:50447-50466 | Msa1418830:CDS | 40.0% | |
| !! | ACCTTGGCCTTAGAATCTTT+AGG | - | tig0024643:50457-50476 | None:intergenic | 40.0% |
| CTCTTCTTCTGCTTCTTCTT+TGG | - | tig0024643:50524-50543 | None:intergenic | 40.0% | |
| CAAAGAAGAAGCAGAAGAAG+AGG | + | tig0024643:50522-50541 | Msa1418830:CDS | 40.0% | |
| AGAAGATCAAGGGGATTCTT+GGG | - | tig0024643:50562-50581 | None:intergenic | 40.0% | |
| AAGAAGATCAAGGGGATTCT+TGG | - | tig0024643:50563-50582 | None:intergenic | 40.0% | |
| TCATCCAGTATCATCTTGCT+TGG | - | tig0024643:50589-50608 | None:intergenic | 40.0% | |
| TTCAGAGAGGTTGCTATCAA+AGG | + | tig0024643:50643-50662 | Msa1418830:CDS | 40.0% | |
| ATCTGGACTCAATATTGGTG+AGG | + | tig0024643:50729-50748 | Msa1418830:intron | 40.0% | |
| ! | CGTTTGTAGCGAGTGAATTT+TGG | + | tig0024643:50819-50838 | Msa1418830:intron | 40.0% |
| !! | GTGTTTGTTGTTATGGGCTT+GGG | - | tig0024643:50907-50926 | None:intergenic | 40.0% |
| !! | TGTGTTTGTTGTTATGGGCT+TGG | - | tig0024643:50908-50927 | None:intergenic | 40.0% |
| GTACTCTGCTTGTGATTGAT+GGG | + | tig0024643:51082-51101 | Msa1418830:intron | 40.0% | |
| TGAAAAAAATCAGCTTGGGC+TGG | + | tig0024643:51159-51178 | Msa1418830:intron | 40.0% | |
| CATTGTGAAATTTGCGGTTC+TGG | + | tig0024643:51230-51249 | Msa1418830:intron | 40.0% | |
| CCAAAATCCTGCAAGATAGA+AGG | - | tig0024643:51318-51337 | None:intergenic | 40.0% | |
| ! | CCTTCTATCTTGCAGGATTT+TGG | + | tig0024643:51315-51334 | Msa1418830:intron | 40.0% |
| ! | CTTTCCAAAAGCATACTTGC+GGG | - | tig0024643:51462-51481 | None:intergenic | 40.0% |
| !!! | TGAGCCACCTTTTAAGGTAA+AGG | + | tig0024643:51499-51518 | Msa1418830:CDS | 40.0% |
| !!! | GAGCCACCTTTTAAGGTAAA+GGG | + | tig0024643:51500-51519 | Msa1418830:CDS | 40.0% |
| !!! | AGCCACCTTTTAAGGTAAAG+GGG | + | tig0024643:51501-51520 | Msa1418830:CDS | 40.0% |
| AACCCCTTTACCTTAAAAGG+TGG | - | tig0024643:51506-51525 | None:intergenic | 40.0% | |
| CACAACCCCTTTACCTTAAA+AGG | - | tig0024643:51509-51528 | None:intergenic | 40.0% | |
| !!! | CTTTTAAGGTAAAGGGGTTG+TGG | + | tig0024643:51507-51526 | Msa1418830:CDS | 40.0% |
| ATTTAGGGATTTCTTGCCCA+CGG | - | tig0024643:51538-51557 | None:intergenic | 40.0% | |
| GATGGATGAATGCTATGACA+TGG | + | tig0024643:51562-51581 | Msa1418830:CDS | 40.0% | |
| ATGACATGGAGCTGTATGAA+TGG | + | tig0024643:51576-51595 | Msa1418830:CDS | 40.0% | |
| GTAAATCGCATAGCAGTGAG+AGG | + | tig0024643:48578-48597 | Msa1418830:five_prime_UTR | 45.0% | |
| ! | ACAGAGGCAGTTAGTTTGAG+CGG | - | tig0024643:48627-48646 | None:intergenic | 45.0% |
| AGTCCAGATCGACCCTAATA+TGG | + | tig0024643:48790-48809 | Msa1418830:exon | 45.0% | |
| AAGCCATATTAGGGTCGATC+TGG | - | tig0024643:48796-48815 | None:intergenic | 45.0% | |
| GATCGACCCTAATATGGCTT+TGG | + | tig0024643:48796-48815 | Msa1418830:exon | 45.0% | |
| GACACCCATCTCAAAATTGG+GGG | - | tig0024643:48989-49008 | None:intergenic | 45.0% | |
| TCTCAAAGACAGGACCATCA+GGG | - | tig0024643:49074-49093 | None:intergenic | 45.0% | |
| ! | CAAGTGGCTCTATCCAAGAT+TGG | + | tig0024643:49321-49340 | Msa1418830:CDS | 45.0% |
| AGAGAAGACTTACTGGAGGA+AGG | - | tig0024643:49360-49379 | None:intergenic | 45.0% | |
| GTTGAGGAGAGAAGACTTAC+TGG | - | tig0024643:49367-49386 | None:intergenic | 45.0% | |
| CAGATGTGTATGTCAGACAG+CGG | + | tig0024643:49496-49515 | Msa1418830:intron | 45.0% | |
| GCTAGCTATGTTTCCACAAG+GGG | + | tig0024643:49523-49542 | Msa1418830:intron | 45.0% | |
| CTAGCTATGTTTCCACAAGG+GGG | + | tig0024643:49524-49543 | Msa1418830:intron | 45.0% | |
| TTGTTGCCAAAGGGTAGCTT+TGG | - | tig0024643:49818-49837 | None:intergenic | 45.0% | |
| ! | GCGAAGCTATTTGTTGCCAA+AGG | - | tig0024643:49828-49847 | None:intergenic | 45.0% |
| TGTCAATGTGTCAGTGTCTG+TGG | + | tig0024643:50021-50040 | Msa1418830:intron | 45.0% | |
| !! | CTAGGTAAGTATTGGAGGCA+AGG | - | tig0024643:50219-50238 | None:intergenic | 45.0% |
| GCCTCCAATACTTACCTAGT+TGG | + | tig0024643:50220-50239 | Msa1418830:CDS | 45.0% | |
| !! | GCCAACTAGGTAAGTATTGG+AGG | - | tig0024643:50224-50243 | None:intergenic | 45.0% |
| GTGGCCAACTAGGTAAGTAT+TGG | - | tig0024643:50227-50246 | None:intergenic | 45.0% | |
| TGTCGTTATGATGTCAGCCA+GGG | - | tig0024643:50257-50276 | None:intergenic | 45.0% | |
| ATGTCGTTATGATGTCAGCC+AGG | - | tig0024643:50258-50277 | None:intergenic | 45.0% | |
| ! | CGAGAGATACTTTTGGACCT+TGG | + | tig0024643:50342-50361 | Msa1418830:CDS | 45.0% |
| GAAGTTTGGCTGATTGACCA+AGG | - | tig0024643:50362-50381 | None:intergenic | 45.0% | |
| GATATTAGGCCAAGTCAAGC+AGG | + | tig0024643:50387-50406 | Msa1418830:CDS | 45.0% | |
| GGCTTCTTTGCAGATTGAAG+AGG | - | tig0024643:50427-50446 | None:intergenic | 45.0% | |
| GGCCTTAGAATCTTTAGGCT+GGG | - | tig0024643:50452-50471 | None:intergenic | 45.0% | |
| ! | TGGCCTTAGAATCTTTAGGC+TGG | - | tig0024643:50453-50472 | None:intergenic | 45.0% |
| !! | GCCTAAAGATTCTAAGGCCA+AGG | + | tig0024643:50453-50472 | Msa1418830:CDS | 45.0% |
| ! | TTTGGGTTCGTCGTTTACCT+TGG | - | tig0024643:50473-50492 | None:intergenic | 45.0% |
| GGTAAACGACGAACCCAAAA+AGG | + | tig0024643:50474-50493 | Msa1418830:CDS | 45.0% | |
| AAACGACGAACCCAAAAAGG+AGG | + | tig0024643:50477-50496 | Msa1418830:CDS | 45.0% | |
| ! | ACCTTCTTGGCCTCCTTTTT+GGG | - | tig0024643:50490-50509 | None:intergenic | 45.0% |
| ! | GCTTCTTCTTTGGGCTTTTC+TGG | - | tig0024643:50514-50533 | None:intergenic | 45.0% |
| TCAAGGGGATTCTTGGGTTT+GGG | - | tig0024643:50556-50575 | None:intergenic | 45.0% | |
| ATCAAGGGGATTCTTGGGTT+TGG | - | tig0024643:50557-50576 | None:intergenic | 45.0% | |
| CTTGGAGGAAGAAGATCAAG+GGG | - | tig0024643:50571-50590 | None:intergenic | 45.0% | |
| GCTTGGAGGAAGAAGATCAA+GGG | - | tig0024643:50572-50591 | None:intergenic | 45.0% | |
| TGCTTGGAGGAAGAAGATCA+AGG | - | tig0024643:50573-50592 | None:intergenic | 45.0% | |
| TCCTCCAAGCAAGATGATAC+TGG | + | tig0024643:50582-50601 | Msa1418830:CDS | 45.0% | |
| TCCAGTATCATCTTGCTTGG+AGG | - | tig0024643:50586-50605 | None:intergenic | 45.0% | |
| GCAAGATGATACTGGATGAC+TGG | + | tig0024643:50590-50609 | Msa1418830:CDS | 45.0% | |
| !!! | GGTGAGGCACAATTTTTTCG+CGG | + | tig0024643:50745-50764 | Msa1418830:intron | 45.0% |
| GGTACTCTGCTTGTGATTGA+TGG | + | tig0024643:51081-51100 | Msa1418830:intron | 45.0% | |
| TCACAATGTACAATCAGGGG+CGG | - | tig0024643:51218-51237 | None:intergenic | 45.0% | |
| TGGGACATGTATGATCCTGA+AGG | + | tig0024643:51335-51354 | Msa1418830:CDS | 45.0% | |
| GGGACATGTATGATCCTGAA+GGG | + | tig0024643:51336-51355 | Msa1418830:CDS | 45.0% | |
| GTGACATTGAACAAGGTTGG+TGG | + | tig0024643:51413-51432 | Msa1418830:CDS | 45.0% | |
| !! | AGGTTGGTGGATTTCTTCAG+CGG | + | tig0024643:51426-51445 | Msa1418830:CDS | 45.0% |
| ! | TTAGCCCGCAAGTATGCTTT+TGG | + | tig0024643:51455-51474 | Msa1418830:CDS | 45.0% |
| GGAGCTGTATGAATGGACAA+AGG | + | tig0024643:51583-51602 | Msa1418830:CDS | 45.0% | |
| !!! | ATTAATTTTAAAATAAGTTT+GGG | - | tig0024643:49465-49484 | None:intergenic | 5.0% |
| !!! | AATTAATTTTAAAATAAGTT+TGG | - | tig0024643:49466-49485 | None:intergenic | 5.0% |
| !!! | AAACTTATTTTAAAATTAAT+TGG | + | tig0024643:49465-49484 | Msa1418830:intron | 5.0% |
| !! | TTATTTCATTTATTTAAATT+TGG | - | tig0024643:49550-49569 | None:intergenic | 5.0% |
| TTGAGCGGCGGAGTGATTTA+GGG | - | tig0024643:48612-48631 | None:intergenic | 50.0% | |
| TTTGAGCGGCGGAGTGATTT+AGG | - | tig0024643:48613-48632 | None:intergenic | 50.0% | |
| CGACATGAATCCTCTTGGCA+AGG | + | tig0024643:49032-49051 | Msa1418830:CDS | 50.0% | |
| AAGACAGGAACCTTGCCAAG+AGG | - | tig0024643:49045-49064 | None:intergenic | 50.0% | |
| TCTTGGCAAGGTTCCTGTCT+TGG | + | tig0024643:49044-49063 | Msa1418830:CDS | 50.0% | |
| CTCAAAGACAGGACCATCAG+GGG | - | tig0024643:49073-49092 | None:intergenic | 50.0% | |
| CTCTCAAAGACAGGACCATC+AGG | - | tig0024643:49075-49094 | None:intergenic | 50.0% | |
| GAGGAGAGAAGACTTACTGG+AGG | - | tig0024643:49364-49383 | None:intergenic | 50.0% | |
| GATACGGTGTGGCATGGATT+GGG | - | tig0024643:49443-49462 | None:intergenic | 50.0% | |
| ACGGACACTGACACATTCCT+CGG | + | tig0024643:49929-49948 | Msa1418830:intron | 50.0% | |
| !! | GTGTCAGATTTGGTGTGTCC+CGG | - | tig0024643:49956-49975 | None:intergenic | 50.0% |
| TGTCCGTATCCGTGCTTCAT+AGG | + | tig0024643:50049-50068 | Msa1418830:intron | 50.0% | |
| CTCGACATGAGGAAACTCTG+AGG | - | tig0024643:50326-50345 | None:intergenic | 50.0% | |
| ACCCAAAAAGGAGGCCAAGA+AGG | + | tig0024643:50486-50505 | Msa1418830:CDS | 50.0% | |
| ! | CACCTTCTTGGCCTCCTTTT+TGG | - | tig0024643:50491-50510 | None:intergenic | 50.0% |
| GGATTCTTGGGTTTGGGCTT+GGG | - | tig0024643:50550-50569 | None:intergenic | 50.0% | |
| TTTGTGATTGTACGCAGGGG+CGG | + | tig0024643:50706-50725 | Msa1418830:intron | 50.0% | |
| GGCGGATCTGGACTCAATAT+TGG | + | tig0024643:50724-50743 | Msa1418830:intron | 50.0% | |
| !! | AAAATCAGCTTGGGCTGGTG+TGG | + | tig0024643:51164-51183 | Msa1418830:intron | 50.0% |
| !! | ATCCTGAAGGGTACTCTCTC+TGG | + | tig0024643:51348-51367 | Msa1418830:CDS | 50.0% |
| !! | AACCAGAGAGAGTACCCTTC+AGG | - | tig0024643:51353-51372 | None:intergenic | 50.0% |
| !! | TGGTGGATTTCTTCAGCGGA+TGG | + | tig0024643:51430-51449 | Msa1418830:CDS | 50.0% |
| !!! | CGGTTCTGAGCCACCTTTTA+AGG | + | tig0024643:51493-51512 | Msa1418830:CDS | 50.0% |
| AACAGAGGTTCCCCCTCAAA+AGG | - | tig0024643:51668-51687 | None:intergenic | 50.0% | |
| !! | TTTTGAGGGGGAACCTCTGT+TGG | + | tig0024643:51667-51686 | Msa1418830:CDS | 50.0% |
| AAGCACTTGGCATCCAACAG+AGG | - | tig0024643:51683-51702 | None:intergenic | 50.0% | |
| CCTTCGAACCCATCAAACGA+GGG | - | tig0024643:51927-51946 | None:intergenic | 50.0% | |
| ACCTTCGAACCCATCAAACG+AGG | - | tig0024643:51928-51947 | None:intergenic | 50.0% | |
| ! | GAGGCAGTTAGTTTGAGCGG+CGG | - | tig0024643:48624-48643 | None:intergenic | 55.0% |
| CCATCAGGGGTTTCCAAGAC+AGG | - | tig0024643:49060-49079 | None:intergenic | 55.0% | |
| CCTGTCTTGGAAACCCCTGA+TGG | + | tig0024643:49057-49076 | Msa1418830:CDS | 55.0% | |
| GGATACGGTGTGGCATGGAT+TGG | - | tig0024643:49444-49463 | None:intergenic | 55.0% | |
| ! | GTTTGGGATACGGTGTGGCA+TGG | - | tig0024643:49449-49468 | None:intergenic | 55.0% |
| GGGTAGCCAAAGCTACCCTT+TGG | + | tig0024643:49809-49828 | Msa1418830:intron | 55.0% | |
| CACTGACACATTCCTCGGAC+CGG | + | tig0024643:49934-49953 | Msa1418830:intron | 55.0% | |
| ACTGACACATTCCTCGGACC+GGG | + | tig0024643:49935-49954 | Msa1418830:intron | 55.0% | |
| CAGCTTCAGCCTGCTTGACT+TGG | - | tig0024643:50399-50418 | None:intergenic | 55.0% | |
| !! | GGGCTTTTCTGGCACCTTCT+TGG | - | tig0024643:50503-50522 | None:intergenic | 55.0% |
| GGGATTCTTGGGTTTGGGCT+TGG | - | tig0024643:50551-50570 | None:intergenic | 55.0% | |
| ! | AAGGGGTTGTGGCTTTTCCG+TGG | + | tig0024643:51518-51537 | Msa1418830:CDS | 55.0% |
| ! | AGGGGTTGTGGCTTTTCCGT+GGG | + | tig0024643:51519-51538 | Msa1418830:CDS | 55.0% |
| AACCCATCAAACGAGGGAGC+GGG | - | tig0024643:51921-51940 | None:intergenic | 55.0% | |
| GAACCCATCAAACGAGGGAG+CGG | - | tig0024643:51922-51941 | None:intergenic | 55.0% | |
| !! | CCCTCGTTTGATGGGTTCGA+AGG | + | tig0024643:51924-51943 | Msa1418830:three_prime_UTR | 55.0% |
| !! | ACGGTGTGGCATGGATTGGG+TGG | - | tig0024643:49440-49459 | None:intergenic | 60.0% |
| !! | ATTTGGTGTGTCCCGGTCCG+AGG | - | tig0024643:49949-49968 | None:intergenic | 60.0% |
| GGGTGACAGAGTGGCCAACT+AGG | - | tig0024643:50237-50256 | None:intergenic | 60.0% | |
| AGTTGGCCACTCTGTCACCC+TGG | + | tig0024643:50237-50256 | Msa1418830:CDS | 60.0% | |
| TGTCAGCCAGGGTGACAGAG+TGG | - | tig0024643:50246-50265 | None:intergenic | 60.0% | |
| ATTGTACGCAGGGGCGGATC+TGG | + | tig0024643:50712-50731 | Msa1418830:intron | 60.0% | |
| TGCCACACCAGGACCTGTTC+AGG | + | tig0024643:51191-51210 | Msa1418830:intron | 60.0% | |
| GACCTGAACAGGTCCTGGTG+TGG | - | tig0024643:51196-51215 | None:intergenic | 60.0% | |
| AATCAGGGGCGGACCTGAAC+AGG | - | tig0024643:51207-51226 | None:intergenic | 60.0% | |
| TCTCCCGCTCCCTCGTTTGA+TGG | + | tig0024643:51915-51934 | Msa1418830:three_prime_UTR | 60.0% | |
| CTCCCGCTCCCTCGTTTGAT+GGG | + | tig0024643:51916-51935 | Msa1418830:three_prime_UTR | 60.0% | |
| CAGCAGCAGCAGCAGCAAGC+AGG | + | tig0024643:48764-48783 | Msa1418830:five_prime_UTR | 65.0% | |
| GGTGTGGCACTTGCCACACC+AGG | + | tig0024643:51180-51199 | Msa1418830:intron | 65.0% | |
| GGGCGGACCTGAACAGGTCC+TGG | - | tig0024643:51201-51220 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024643 | gene | 48557 | 52002 | 48557 | ID=Msa1418830;Name=Msa1418830 |
| tig0024643 | mRNA | 48557 | 52002 | 48557 | ID=Msa1418830-mRNA-1;Parent=Msa1418830;Name=Msa1418830-mRNA-1;_AED=0.03;_eAED=0.03;_QI=133|1|1|1|0.8|0.83|6|293|418 |
| tig0024643 | exon | 48557 | 48644 | 48557 | ID=Msa1418830-mRNA-1:exon:526;Parent=Msa1418830-mRNA-1 |
| tig0024643 | exon | 48764 | 48817 | 48764 | ID=Msa1418830-mRNA-1:exon:527;Parent=Msa1418830-mRNA-1 |
| tig0024643 | exon | 48904 | 49164 | 48904 | ID=Msa1418830-mRNA-1:exon:528;Parent=Msa1418830-mRNA-1 |
| tig0024643 | exon | 49265 | 49366 | 49265 | ID=Msa1418830-mRNA-1:exon:529;Parent=Msa1418830-mRNA-1 |
| tig0024643 | exon | 50160 | 50664 | 50160 | ID=Msa1418830-mRNA-1:exon:530;Parent=Msa1418830-mRNA-1 |
| tig0024643 | exon | 51330 | 52002 | 51330 | ID=Msa1418830-mRNA-1:exon:531;Parent=Msa1418830-mRNA-1 |
| tig0024643 | five_prime_UTR | 48557 | 48644 | 48557 | ID=Msa1418830-mRNA-1:five_prime_utr;Parent=Msa1418830-mRNA-1 |
| tig0024643 | five_prime_UTR | 48764 | 48808 | 48764 | ID=Msa1418830-mRNA-1:five_prime_utr;Parent=Msa1418830-mRNA-1 |
| tig0024643 | CDS | 48809 | 48817 | 48809 | ID=Msa1418830-mRNA-1:cds;Parent=Msa1418830-mRNA-1 |
| tig0024643 | CDS | 48904 | 49164 | 48904 | ID=Msa1418830-mRNA-1:cds;Parent=Msa1418830-mRNA-1 |
| tig0024643 | CDS | 49265 | 49366 | 49265 | ID=Msa1418830-mRNA-1:cds;Parent=Msa1418830-mRNA-1 |
| tig0024643 | CDS | 50160 | 50664 | 50160 | ID=Msa1418830-mRNA-1:cds;Parent=Msa1418830-mRNA-1 |
| tig0024643 | CDS | 51330 | 51709 | 51330 | ID=Msa1418830-mRNA-1:cds;Parent=Msa1418830-mRNA-1 |
| tig0024643 | three_prime_UTR | 51710 | 52002 | 51710 | ID=Msa1418830-mRNA-1:three_prime_utr;Parent=Msa1418830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
