Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438200 | XP_013468814.1 | 91.017 | 757 | 24 | 3 | 40 | 796 | 109 | 821 | 0.0 | 1384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438200 | A0A072VMP0 | 91.017 | 757 | 24 | 3 | 40 | 796 | 109 | 821 | 0.0 | 1384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030830 | Msa1438200 | 0.976668 | 2.870823e-142 | -8.615850e-47 |
| Msa0078340 | Msa1438200 | 0.979110 | 2.961893e-147 | -8.615850e-47 |
| Msa0267870 | Msa1438200 | 0.850620 | 1.509586e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438200 | MtrunA17_Chr1g0188471 | 91.017 | 757 | 24 | 3 | 40 | 796 | 109 | 821 | 0.0 | 1384 |
| Msa1438200 | MtrunA17_Chr6g0477131 | 61.089 | 753 | 210 | 12 | 51 | 796 | 63 | 739 | 0.0 | 847 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1438200 | AT5G08450.3 | 55.527 | 787 | 248 | 12 | 36 | 796 | 208 | 918 | 0.0 | 799 |
| Msa1438200 | AT5G08450.1 | 55.527 | 787 | 248 | 12 | 36 | 796 | 208 | 918 | 0.0 | 799 |
| Msa1438200 | AT5G08450.2 | 55.527 | 787 | 248 | 12 | 36 | 796 | 208 | 918 | 0.0 | 799 |
Find 209 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAATTAATGTACTTATT+TGG | 0.131352 | tig0028517:+52452 | Msa1438200:three_prime_UTR |
| GTCTTTCGCTTCTACTATTA+AGG | 0.145555 | tig0028517:+52393 | Msa1438200:three_prime_UTR |
| CACATCTGCTCGATTGAAAA+AGG | 0.213489 | tig0028517:+51551 | Msa1438200:CDS |
| GGTCAGAGGCGGCCAGCTTT+GGG | 0.215858 | tig0028517:+49977 | Msa1438200:intron |
| TATATAAGTTCTGGTATTTC+AGG | 0.243212 | tig0028517:+48289 | Msa1438200:CDS |
| AGGTCAGAGGCGGCCAGCTT+TGG | 0.245444 | tig0028517:+49976 | Msa1438200:intron |
| CGTGCTTGGGGTGCTAAAAT+TGG | 0.248389 | tig0028517:+50434 | Msa1438200:CDS |
| CAAACTGGTGTTTGGATTGC+AGG | 0.277043 | tig0028517:+52292 | Msa1438200:CDS |
| GTGCCGGCAGAAATTATTAT+TGG | 0.291264 | tig0028517:+48172 | Msa1438200:CDS |
| GGTTCATTCGCCTGAGTTGC+TGG | 0.305306 | tig0028517:-51966 | None:intergenic |
| AAGAAAGACGGCGCCAATTT+CGG | 0.308912 | tig0028517:-46695 | None:intergenic |
| GGGAAGCTCGTGAAGCTGTT+GGG | 0.312197 | tig0028517:+47153 | Msa1438200:CDS |
| CGCAGGTGCATATCCGAAAT+TGG | 0.316104 | tig0028517:+46682 | Msa1438200:CDS |
| TGATCCTCCTGGCGCGAGTT+TGG | 0.318436 | tig0028517:+47043 | Msa1438200:CDS |
| GACTCTTCATGAGATTTCTT+AGG | 0.324563 | tig0028517:-46626 | None:intergenic |
| AAATACCAGAACTTATATAT+TGG | 0.329432 | tig0028517:-48285 | None:intergenic |
| AAGAATTACGCGCAACCATT+CGG | 0.339382 | tig0028517:+50177 | Msa1438200:CDS |
| GGTAAGACAGTTTCTTGTTC+AGG | 0.349229 | tig0028517:-47569 | None:intergenic |
| TCTTATGTTGTTTATAAAGT+TGG | 0.350015 | tig0028517:+48325 | Msa1438200:CDS |
| GCTATTTGAAACATCTTTCT+CGG | 0.351179 | tig0028517:-47513 | None:intergenic |
| GGAAGTGAAGCATCGGGACT+GGG | 0.361092 | tig0028517:+47235 | Msa1438200:CDS |
| CAGAAATTGATGCGCACAAT+TGG | 0.362794 | tig0028517:+52104 | Msa1438200:CDS |
| TGTATGGACATACAATCTTT+TGG | 0.367782 | tig0028517:-50209 | None:intergenic |
| ACTGAGAAGAAGGAGATGTT+TGG | 0.371321 | tig0028517:+46807 | Msa1438200:CDS |
| AATGGTCTCAAACTGGTGTT+TGG | 0.374846 | tig0028517:+52284 | Msa1438200:CDS |
| AGAATTACGCGCAACCATTC+GGG | 0.375276 | tig0028517:+50178 | Msa1438200:CDS |
| CAATGTACGTTCCCGTGCTT+GGG | 0.376198 | tig0028517:+50421 | Msa1438200:CDS |
| GAAAGGGAAGCTGATTTAGT+AGG | 0.382092 | tig0028517:+47644 | Msa1438200:CDS |
| TTTAGATCTATCGTCACCTT+TGG | 0.390168 | tig0028517:-47192 | None:intergenic |
| GCCCATTGATAATCAATTGC+TGG | 0.392653 | tig0028517:+48194 | Msa1438200:CDS |
| TCAGCAGAACCAAGGGAGTA+TGG | 0.398466 | tig0028517:+47128 | Msa1438200:CDS |
| TCTTTCGCTTCTACTATTAA+GGG | 0.401795 | tig0028517:+52394 | Msa1438200:three_prime_UTR |
| TGCGGCTAGCGGCCTTCACT+TGG | 0.401963 | tig0028517:+46977 | Msa1438200:CDS |
| AGGAAGTGAAGCATCGGGAC+TGG | 0.402780 | tig0028517:+47234 | Msa1438200:CDS |
| GACTCTTGCTCCCGTGGCTG+TGG | 0.403687 | tig0028517:+50626 | Msa1438200:CDS |
| ACAATGTACGTTCCCGTGCT+TGG | 0.404868 | tig0028517:+50420 | Msa1438200:CDS |
| TGAACAAGAAACTGTCTTAC+CGG | 0.408860 | tig0028517:+47571 | Msa1438200:CDS |
| TATGACTCCGATCTTGTTGC+TGG | 0.415495 | tig0028517:+50017 | Msa1438200:CDS |
| ATGGCCCCACTCTGGAAATT+CGG | 0.415777 | tig0028517:+48434 | Msa1438200:CDS |
| CTAGCGGCCTTCACTTGGAT+TGG | 0.421167 | tig0028517:+46982 | Msa1438200:CDS |
| ACAAACCGAGGCTGCGGCCC+TGG | 0.427516 | tig0028517:-50664 | None:intergenic |
| GTGATCTTTGTATCCTCTTA+CGG | 0.431829 | tig0028517:-47781 | None:intergenic |
| GATGTTTGGAGAAGTAAGAA+AGG | 0.434703 | tig0028517:+46821 | Msa1438200:CDS |
| TGCCAGCAATTGATTATCAA+TGG | 0.435849 | tig0028517:-48196 | None:intergenic |
| AGGAAAAGGATCAGATGAAG+AGG | 0.440033 | tig0028517:+47474 | Msa1438200:CDS |
| AGCGAGAAGGAACCTGTTGA+TGG | 0.445827 | tig0028517:+47533 | Msa1438200:CDS |
| TTAGGTGTTGGAGGAGAACT+TGG | 0.446465 | tig0028517:+52246 | Msa1438200:intron |
| GATATACAATGGTCTCAAAC+TGG | 0.449001 | tig0028517:+52277 | Msa1438200:CDS |
| ACCTTAGCCGATCCATCAAC+AGG | 0.450588 | tig0028517:-47545 | None:intergenic |
| CCGTCTTTCTTCAGTTTCAA+AGG | 0.455103 | tig0028517:+46707 | Msa1438200:CDS |
| GTCAGAGGCGGCCAGCTTTG+GGG | 0.459665 | tig0028517:+49978 | Msa1438200:CDS |
| GATGCACATGTTGAAGTTAG+AGG | 0.460869 | tig0028517:+46870 | Msa1438200:CDS |
| GCATCAATCATAACATGATC+AGG | 0.460916 | tig0028517:-52047 | None:intergenic |
| GACTACCAGGGCCGCAGCCT+CGG | 0.462584 | tig0028517:+50659 | Msa1438200:CDS |
| CGCATCAATTTCTGTGGCAG+AGG | 0.465734 | tig0028517:-52095 | None:intergenic |
| CACCATCCACATTCTGCAAA+TGG | 0.465832 | tig0028517:+52011 | Msa1438200:CDS |
| GCAGGAGGTGGAGATGCTGT+TGG | 0.466066 | tig0028517:-50146 | None:intergenic |
| TTGTGTATTCCCACGTAACA+TGG | 0.468448 | tig0028517:-47075 | None:intergenic |
| TGGTGTTTGGATTGCAGGAA+AGG | 0.471986 | tig0028517:+52297 | Msa1438200:CDS |
| TCTTGTATGGCTGCAGGAGG+TGG | 0.472238 | tig0028517:-50158 | None:intergenic |
| GGGGAAGCTCGTGAAGCTGT+TGG | 0.476726 | tig0028517:+47152 | Msa1438200:CDS |
| TAAAGACAAGAGAAAAGAAA+GGG | 0.483019 | tig0028517:+47628 | Msa1438200:CDS |
| TCAGAGGCGGCCAGCTTTGG+GGG | 0.483142 | tig0028517:+49979 | Msa1438200:CDS |
| CAGAACCAAGGGAGTATGGC+GGG | 0.483321 | tig0028517:+47132 | Msa1438200:CDS |
| GTTTATCTTCAGAAAGGAGG+TGG | 0.484444 | tig0028517:+50555 | Msa1438200:intron |
| CTAAAGACAAGAGAAAAGAA+AGG | 0.484997 | tig0028517:+47627 | Msa1438200:CDS |
| GCACTATGATTAGGTGTTGG+AGG | 0.485559 | tig0028517:+52237 | Msa1438200:intron |
| CTCTAACAATGGCCCCACTC+TGG | 0.489167 | tig0028517:+48426 | Msa1438200:CDS |
| AAAAGAAAATTTAAAAGAGA+AGG | 0.489507 | tig0028517:+47454 | Msa1438200:CDS |
| AGTGAAGTCTATAACTATAG+TGG | 0.492425 | tig0028517:+47752 | Msa1438200:CDS |
| CGTAATTCTTGTATGGCTGC+AGG | 0.493153 | tig0028517:-50164 | None:intergenic |
| CAGGAGGTGGAGATGCTGTT+GGG | 0.493377 | tig0028517:-50145 | None:intergenic |
| AGATAAAGATGTTGAAAGGT+GGG | 0.496253 | tig0028517:+47403 | Msa1438200:CDS |
| CAAGGATGGTAGACATGATC+GGG | 0.500951 | tig0028517:+46902 | Msa1438200:CDS |
| AAGATGTTGAAAGGTGGGAG+AGG | 0.501264 | tig0028517:+47408 | Msa1438200:CDS |
| CAGGGTTCCAAACTCGCGCC+AGG | 0.501992 | tig0028517:-47050 | None:intergenic |
| TCATGAAGGAACACTGGTGC+CGG | 0.503226 | tig0028517:+48156 | Msa1438200:CDS |
| TCAGAGTGCTAAAAGTGAAA+AGG | 0.503292 | tig0028517:+46848 | Msa1438200:CDS |
| AATATACAAGTTAGCAATAC+GGG | 0.505779 | tig0028517:+47293 | Msa1438200:CDS |
| AGATGTTGAAAGGTGGGAGA+GGG | 0.505990 | tig0028517:+47409 | Msa1438200:CDS |
| ACATCTTTATCTTGCTTCAG+AGG | 0.506057 | tig0028517:-47392 | None:intergenic |
| ACCTGTTGATGGATCGGCTA+AGG | 0.506107 | tig0028517:+47544 | Msa1438200:CDS |
| ACAATCTTTGCAATGAGCCT+TGG | 0.506694 | tig0028517:+51214 | Msa1438200:CDS |
| TGCACAGTTCTCATGCATAC+AGG | 0.508695 | tig0028517:+50113 | Msa1438200:intron |
| GCAACTCAGGCGAATGAACC+AGG | 0.509092 | tig0028517:+51969 | Msa1438200:CDS |
| TTAGCAATACGGGTAGTGAC+TGG | 0.510037 | tig0028517:+47303 | Msa1438200:CDS |
| GGCACTGTTTAGCTGTGGAA+TGG | 0.510691 | tig0028517:+48215 | Msa1438200:CDS |
| GCTTCCCCGCCATACTCCCT+TGG | 0.510806 | tig0028517:-47137 | None:intergenic |
| ATTCCCACGTAACATGGGCC+AGG | 0.511952 | tig0028517:-47069 | None:intergenic |
| GGTTGCGCGTAATTCTTGTA+TGG | 0.512360 | tig0028517:-50171 | None:intergenic |
| GCTGAAACAAACCGAGGCTG+CGG | 0.512908 | tig0028517:-50670 | None:intergenic |
| GATAGTCATAATGATTCAAA+AGG | 0.512917 | tig0028517:+46924 | Msa1438200:CDS |
| ATGTTATGATTGATGCGTTC+CGG | 0.513877 | tig0028517:+52054 | Msa1438200:CDS |
| GCCAGCAATTGATTATCAAT+GGG | 0.515076 | tig0028517:-48195 | None:intergenic |
| CTGGCGCGAGTTTGGAACCC+TGG | 0.518206 | tig0028517:+47051 | Msa1438200:CDS |
| ATTGTCCGCTCCACAGCCAC+GGG | 0.521413 | tig0028517:-50636 | None:intergenic |
| TACTATTAAGGGAGTGATGG+TGG | 0.522100 | tig0028517:+52405 | Msa1438200:three_prime_UTR |
| ATAGTGGTCAGCACCGTAAG+AGG | 0.524152 | tig0028517:+47768 | Msa1438200:CDS |
| TCAGACGATGGATGTGCTGA+TGG | 0.524170 | tig0028517:+47707 | Msa1438200:CDS |
| AAGATAAAGATGTTGAAAGG+TGG | 0.524455 | tig0028517:+47402 | Msa1438200:CDS |
| AAATTTAAAAGAGAAGGAAA+AGG | 0.524644 | tig0028517:+47460 | Msa1438200:CDS |
| AAGCTGATTTAGTAGGAGAC+AGG | 0.524761 | tig0028517:+47651 | Msa1438200:CDS |
| ACAAGAAATGCACCCTTGCA+AGG | 0.525240 | tig0028517:-52327 | None:intergenic |
| CAATATACAAGTTAGCAATA+CGG | 0.525660 | tig0028517:+47292 | Msa1438200:CDS |
| GAATGAACCAGGCGCAGAGA+AGG | 0.529663 | tig0028517:+51980 | Msa1438200:CDS |
| ACACAAGGTTCAGTTGAGGT+TGG | 0.529870 | tig0028517:+47092 | Msa1438200:CDS |
| AGGTGATACTAAGACAGAAA+AGG | 0.531406 | tig0028517:+46944 | Msa1438200:CDS |
| ACAGGTCTGATAAGCGCAGT+AGG | 0.531771 | tig0028517:+47669 | Msa1438200:CDS |
| TTGTTTCAGTGGCTTCATGA+AGG | 0.533883 | tig0028517:+48142 | Msa1438200:CDS |
| ATGGATGTGCTGATGGGCAA+GGG | 0.536045 | tig0028517:+47714 | Msa1438200:CDS |
| AAAGAAAGGAAGTGAAGCAT+CGG | 0.538057 | tig0028517:+47228 | Msa1438200:CDS |
| TGGAGCGGACAATGACTACC+AGG | 0.540569 | tig0028517:+50646 | Msa1438200:CDS |
| AAAATATATTCTGATCCTCC+TGG | 0.540746 | tig0028517:+47032 | Msa1438200:CDS |
| CACCATTTGCAGAATGTGGA+TGG | 0.541504 | tig0028517:-52013 | None:intergenic |
| CATATATGTTGCAGGTCTCA+AGG | 0.542324 | tig0028517:+48107 | Msa1438200:intron |
| GATGGATGTGCTGATGGGCA+AGG | 0.547049 | tig0028517:+47713 | Msa1438200:CDS |
| AAGAAAGGAAGTGAAGCATC+GGG | 0.547344 | tig0028517:+47229 | Msa1438200:CDS |
| TTCTACTATTAAGGGAGTGA+TGG | 0.549056 | tig0028517:+52402 | Msa1438200:three_prime_UTR |
| GGAAAAGGATCAGATGAAGA+GGG | 0.549365 | tig0028517:+47475 | Msa1438200:CDS |
| ATGAAGAGGGAGTCGTGGAA+TGG | 0.551838 | tig0028517:+47488 | Msa1438200:CDS |
| CAGGTCTGATAAGCGCAGTA+GGG | 0.551861 | tig0028517:+47670 | Msa1438200:CDS |
| GAAGTGAAGCATCGGGACTG+GGG | 0.552074 | tig0028517:+47236 | Msa1438200:CDS |
| GGAAGCTCGTGAAGCTGTTG+GGG | 0.552492 | tig0028517:+47154 | Msa1438200:CDS |
| TGCTGGAGAGAAGTTGGTCA+AGG | 0.552942 | tig0028517:+51938 | Msa1438200:CDS |
| GAGTTCATCAGCAGAACCAA+GGG | 0.553737 | tig0028517:+47121 | Msa1438200:CDS |
| CAAGGCTACACCAGCAACTC+AGG | 0.553901 | tig0028517:+51956 | Msa1438200:CDS |
| AATGGTGAAAGCTCTAACAA+TGG | 0.554756 | tig0028517:+48415 | Msa1438200:CDS |
| ATGCACCTGCGTCTTCATGC+GGG | 0.555218 | tig0028517:-46670 | None:intergenic |
| AAGTGAAGCATCGGGACTGG+GGG | 0.556691 | tig0028517:+47237 | Msa1438200:CDS |
| TAAGAGGATACAAAGATCAC+GGG | 0.558324 | tig0028517:+47784 | Msa1438200:CDS |
| TGGGCAAGGGGCAATAGAAA+AGG | 0.561976 | tig0028517:+47727 | Msa1438200:CDS |
| TATGCACCTGCGTCTTCATG+CGG | 0.564892 | tig0028517:-46671 | None:intergenic |
| TTGCTCCCGTGGCTGTGGAG+CGG | 0.565542 | tig0028517:+50631 | Msa1438200:CDS |
| AATCGAGCAGATGTGTATTG+TGG | 0.566279 | tig0028517:-51543 | None:intergenic |
| TGATACGAAGACTGAGAAGA+AGG | 0.566732 | tig0028517:+46797 | Msa1438200:intron |
| TGTTGGAGGAGAACTTGGAC+TGG | 0.568034 | tig0028517:+52251 | Msa1438200:CDS |
| TTTGTTTATCTTCAGAAAGG+AGG | 0.569004 | tig0028517:+50552 | Msa1438200:intron |
| GAAGGAACCTGTTGATGGAT+CGG | 0.569303 | tig0028517:+47538 | Msa1438200:CDS |
| AGGTTCAGTTGAGGTTGGAA+AGG | 0.569711 | tig0028517:+47097 | Msa1438200:CDS |
| CATTGTCCGCTCCACAGCCA+CGG | 0.570099 | tig0028517:-50637 | None:intergenic |
| GAACCCTGGCCCATGTTACG+TGG | 0.571537 | tig0028517:+47065 | Msa1438200:CDS |
| ACAAGGATGGTAGACATGAT+CGG | 0.572899 | tig0028517:+46901 | Msa1438200:CDS |
| CATTATTGTATTCAGGTCAG+AGG | 0.574281 | tig0028517:+49963 | Msa1438200:intron |
| TATAAGCATTGTAGCAGACA+AGG | 0.576918 | tig0028517:+51509 | Msa1438200:CDS |
| TGAGCCGACTCTTGCTCCCG+TGG | 0.579023 | tig0028517:+50620 | Msa1438200:CDS |
| ATCAGATGAAGAGGGAGTCG+TGG | 0.581068 | tig0028517:+47483 | Msa1438200:CDS |
| GAAAGGAATATACCCTTGCA+AGG | 0.585289 | tig0028517:+52314 | Msa1438200:CDS |
| AGCAAGATAAAGATGTTGAA+AGG | 0.586136 | tig0028517:+47399 | Msa1438200:CDS |
| ATTCTTTCCAATCCAAGTGA+AGG | 0.587175 | tig0028517:-46989 | None:intergenic |
| TCGACATGTTCAAGAGGCAG+AGG | 0.587259 | tig0028517:-52131 | None:intergenic |
| AGAGTTCATCAGCAGAACCA+AGG | 0.587737 | tig0028517:+47120 | Msa1438200:CDS |
| TGGATGTGCTGATGGGCAAG+GGG | 0.595577 | tig0028517:+47715 | Msa1438200:CDS |
| TTCCCACGTAACATGGGCCA+GGG | 0.596850 | tig0028517:-47068 | None:intergenic |
| AGACATACCAGCAACAAGAT+CGG | 0.598403 | tig0028517:-50024 | None:intergenic |
| TGCAAGAGCTGATAAAGTTG+TGG | 0.600141 | tig0028517:+48356 | Msa1438200:CDS |
| TGGTATTTCAGGTAAAGTAG+AGG | 0.601143 | tig0028517:+48300 | Msa1438200:CDS |
| GGGCCAATAATAATTTCTGC+CGG | 0.601601 | tig0028517:-48175 | None:intergenic |
| GTAAGCAATACGATTGGTGA+TGG | 0.603069 | tig0028517:+47362 | Msa1438200:CDS |
| GCGCAGTAGGGGCTTTGACA+AGG | 0.603439 | tig0028517:+47682 | Msa1438200:CDS |
| GCTTCTTACAACGAGACCAC+CGG | 0.606502 | tig0028517:-52073 | None:intergenic |
| TTGCTGGCACTGTTTAGCTG+TGG | 0.607632 | tig0028517:+48210 | Msa1438200:CDS |
| GTACAAGTAAGCAATACGAT+TGG | 0.611525 | tig0028517:+47356 | Msa1438200:CDS |
| AGAGGAGATGACAACAAGGA+TGG | 0.612778 | tig0028517:+46888 | Msa1438200:CDS |
| CAAGAAATGCACCCTTGCAA+GGG | 0.613007 | tig0028517:-52326 | None:intergenic |
| GATATCCGAATTTCCAGAGT+GGG | 0.613558 | tig0028517:-48439 | None:intergenic |
| GTTGGAGGAGAACTTGGACT+GGG | 0.614908 | tig0028517:+52252 | Msa1438200:CDS |
| ACAGCCACGGGAGCAAGAGT+CGG | 0.619177 | tig0028517:-50624 | None:intergenic |
| TATTGTATTCAGGTCAGAGG+CGG | 0.619235 | tig0028517:+49966 | Msa1438200:intron |
| GTAAGAGGATACAAAGATCA+CGG | 0.619894 | tig0028517:+47783 | Msa1438200:CDS |
| AGATGTTTCAAATAGCGAGA+AGG | 0.621242 | tig0028517:+47520 | Msa1438200:CDS |
| GTGGCTTCATGAAGGAACAC+TGG | 0.621597 | tig0028517:+48150 | Msa1438200:CDS |
| ACTATTAAGGGAGTGATGGT+GGG | 0.623081 | tig0028517:+52406 | Msa1438200:three_prime_UTR |
| TGTGTATTCCCACGTAACAT+GGG | 0.623181 | tig0028517:-47074 | None:intergenic |
| GCTGCAGTTATCGAATTGAA+CGG | 0.629213 | tig0028517:+50456 | Msa1438200:CDS |
| AGGTCTGATAAGCGCAGTAG+GGG | 0.630782 | tig0028517:+47671 | Msa1438200:CDS |
| CCTTTGAAACTGAAGAAAGA+CGG | 0.632328 | tig0028517:-46707 | None:intergenic |
| ATTGTGCGCATCAATTTCTG+TGG | 0.633533 | tig0028517:-52101 | None:intergenic |
| TGAACGGTGTTGCATTGTGA+AGG | 0.636161 | tig0028517:+50472 | Msa1438200:CDS |
| TCTGCCTCTTGAACATGTCG+AGG | 0.636664 | tig0028517:+52133 | Msa1438200:CDS |
| AATGTACGTTCCCGTGCTTG+GGG | 0.639375 | tig0028517:+50422 | Msa1438200:CDS |
| ATTTGGAGACACATACGACC+AGG | 0.639905 | tig0028517:+51586 | Msa1438200:CDS |
| ATAAGCATTGTAGCAGACAA+GGG | 0.640627 | tig0028517:+51510 | Msa1438200:CDS |
| AATACCTCGACATGTTCAAG+AGG | 0.641245 | tig0028517:-52137 | None:intergenic |
| CGACATGTTCAAGAGGCAGA+GGG | 0.643401 | tig0028517:-52130 | None:intergenic |
| AGAACCAAGGGAGTATGGCG+GGG | 0.645192 | tig0028517:+47133 | Msa1438200:CDS |
| AGAGCTGATAAAGTTGTGGA+CGG | 0.646325 | tig0028517:+48360 | Msa1438200:CDS |
| CAGACGATGGATGTGCTGAT+GGG | 0.649559 | tig0028517:+47708 | Msa1438200:CDS |
| AGTGAAGCATCGGGACTGGG+GGG | 0.652868 | tig0028517:+47238 | Msa1438200:CDS |
| GAGAACAAAATTGATTCCAA+AGG | 0.653361 | tig0028517:+47176 | Msa1438200:CDS |
| AATTCTTGTATGGCTGCAGG+AGG | 0.654697 | tig0028517:-50161 | None:intergenic |
| CGATATCCGAATTTCCAGAG+TGG | 0.657411 | tig0028517:-48440 | None:intergenic |
| GGTTCCAAACTCGCGCCAGG+AGG | 0.657439 | tig0028517:-47047 | None:intergenic |
| AACCCTGGCCCATGTTACGT+GGG | 0.662153 | tig0028517:+47066 | Msa1438200:CDS |
| AAAGGAATATACCCTTGCAA+GGG | 0.667302 | tig0028517:+52315 | Msa1438200:CDS |
| ATGTTACGTGGGAATACACA+AGG | 0.667886 | tig0028517:+47077 | Msa1438200:CDS |
| GCAGAACCAAGGGAGTATGG+CGG | 0.670054 | tig0028517:+47131 | Msa1438200:CDS |
| AAACACCCGCATGAAGACGC+AGG | 0.670959 | tig0028517:+46665 | Msa1438200:CDS |
| TTATGATTGATGCGTTCCGG+TGG | 0.672968 | tig0028517:+52057 | Msa1438200:CDS |
| ATTTGTAGCAGTAACATACT+CGG | 0.674038 | tig0028517:-48464 | None:intergenic |
| AGTTAGAGGAGATGACAACA+AGG | 0.674306 | tig0028517:+46884 | Msa1438200:CDS |
| AAGAGGATACAAAGATCACG+GGG | 0.691210 | tig0028517:+47785 | Msa1438200:CDS |
| GGAGCGGACAATGACTACCA+GGG | 0.693176 | tig0028517:+50647 | Msa1438200:CDS |
| TGGACTGGGAAGATATACAA+TGG | 0.693989 | tig0028517:+52266 | Msa1438200:CDS |
| GAATACACAAGGTTCAGTTG+AGG | 0.702018 | tig0028517:+47088 | Msa1438200:CDS |
| GTTGATGTATGTGTGAGGCA+AGG | 0.705622 | tig0028517:-50594 | None:intergenic |
| ATATCCGAATTTCCAGAGTG+GGG | 0.715872 | tig0028517:-48438 | None:intergenic |
| TTTGACAAGGAATCAGACGA+TGG | 0.737459 | tig0028517:+47695 | Msa1438200:CDS |
| CAATAGTTGATGTATGTGTG+AGG | 0.739184 | tig0028517:-50599 | None:intergenic |
| AGAGGATACAAAGATCACGG+GGG | 0.825867 | tig0028517:+47786 | Msa1438200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTCTTTTTCTTT+GGG | - | tig0028517:47449-47468 | None:intergenic | 10.0% |
| !!! | TTTTAAATTTTCTTTTTCTT+TGG | - | tig0028517:47450-47469 | None:intergenic | 10.0% |
| !! | AATGAAAAAAAAAAAATAGA+AGG | - | tig0028517:48656-48675 | None:intergenic | 10.0% |
| !!! | AGTATTACAATTAAATTTTA+AGG | - | tig0028517:49891-49910 | None:intergenic | 10.0% |
| !! | TTTCCATTTAAATATTTATT+TGG | + | tig0028517:50341-50360 | Msa1438200:intron | 10.0% |
| !! | TATAAAATAATATCAAGATA+AGG | - | tig0028517:51437-51456 | None:intergenic | 10.0% |
| !!! | AATTTTTTTGTTTTGTTTTT+TGG | + | tig0028517:52359-52378 | Msa1438200:exon | 10.0% |
| !! | AATTAATTAATGTACTTATT+TGG | + | tig0028517:52452-52471 | Msa1438200:three_prime_UTR | 10.0% |
| !! | AAAAGAAAATTTAAAAGAGA+AGG | + | tig0028517:47454-47473 | Msa1438200:CDS | 15.0% |
| !! | TTGAATGACAATATATTTAT+TGG | - | tig0028517:47920-47939 | None:intergenic | 15.0% |
| !! | AAAAAAAACACCATAAAAAT+AGG | - | tig0028517:48041-48060 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATAGAAGGAA+CGG | - | tig0028517:48651-48670 | None:intergenic | 15.0% |
| !!! | TTTTTAAACCAAAAAACTAT+AGG | + | tig0028517:49363-49382 | Msa1438200:intron | 15.0% |
| !!! | TTTTCATAATAGCATAAAAT+TGG | - | tig0028517:49721-49740 | None:intergenic | 15.0% |
| !!! | ATTTTAAGGATATAGAAAAA+AGG | - | tig0028517:49877-49896 | None:intergenic | 15.0% |
| !! | TTGCCAAATAAATATTTAAA+TGG | - | tig0028517:50347-50366 | None:intergenic | 15.0% |
| !!! | AACAGTTATTGATTATATTT+TGG | - | tig0028517:50741-50760 | None:intergenic | 15.0% |
| !! | TTACTAAAATAACACAAATT+GGG | - | tig0028517:51310-51329 | None:intergenic | 15.0% |
| !! | ATTACTAAAATAACACAAAT+TGG | - | tig0028517:51311-51330 | None:intergenic | 15.0% |
| !! | AAATTTAAAAGAGAAGGAAA+AGG | + | tig0028517:47460-47479 | Msa1438200:CDS | 20.0% |
| !! | AATAGGATTCTAATCAATTA+AGG | - | tig0028517:48024-48043 | None:intergenic | 20.0% |
| !!! | TGATTAGAATCCTATTTTTA+TGG | + | tig0028517:48028-48047 | Msa1438200:intron | 20.0% |
| !!! | TGGTGTTTTTTTTTTTAGTA+TGG | + | tig0028517:48048-48067 | Msa1438200:intron | 20.0% |
| !! | TTATATATTGGAAAAAGCAA+AGG | - | tig0028517:48276-48295 | None:intergenic | 20.0% |
| !!! | TTTTTCCAATATATAAGTTC+TGG | + | tig0028517:48280-48299 | Msa1438200:CDS | 20.0% |
| !! | AAATACCAGAACTTATATAT+TGG | - | tig0028517:48288-48307 | None:intergenic | 20.0% |
| !!! | TCTTATGTTGTTTATAAAGT+TGG | + | tig0028517:48325-48344 | Msa1438200:CDS | 20.0% |
| !! | CAATCTCAAATTGAAAAAAA+TGG | + | tig0028517:48397-48416 | Msa1438200:CDS | 20.0% |
| !! | AAATGTGTGAAAAAGAAAAA+GGG | - | tig0028517:48791-48810 | None:intergenic | 20.0% |
| !! | AAAATGTGTGAAAAAGAAAA+AGG | - | tig0028517:48792-48811 | None:intergenic | 20.0% |
| !! | TTCATGAAAATTATGAAGAA+TGG | - | tig0028517:48847-48866 | None:intergenic | 20.0% |
| !!! | AACATTTTGTAAACTATTAG+AGG | + | tig0028517:48865-48884 | Msa1438200:intron | 20.0% |
| !!! | TAACTCTAAAACTAATAATC+CGG | + | tig0028517:49116-49135 | Msa1438200:intron | 20.0% |
| !! | CTTAGTGATTACTATTATAA+GGG | + | tig0028517:49489-49508 | Msa1438200:intron | 20.0% |
| !! | ATCATTTATGCAATGATTAT+TGG | + | tig0028517:49564-49583 | Msa1438200:intron | 20.0% |
| !! | AAAAAAATGATTTCACAAGA+TGG | + | tig0028517:49824-49843 | Msa1438200:intron | 20.0% |
| !! | ATTGAAGATAATAGTGATTA+TGG | - | tig0028517:50236-50255 | None:intergenic | 20.0% |
| !! | TTAATTATGTATGTAACATC+AGG | + | tig0028517:50377-50396 | Msa1438200:intron | 20.0% |
| !!! | AGTTATTGATTATATTTTGG+AGG | - | tig0028517:50738-50757 | None:intergenic | 20.0% |
| !!! | ATTTCTTGAAGTTAAAGTTT+TGG | + | tig0028517:50832-50851 | Msa1438200:intron | 20.0% |
| !!! | GGTGTTTATTTTTTTCTATT+TGG | + | tig0028517:50853-50872 | Msa1438200:intron | 20.0% |
| !! | TGGAATTAATAACACATTTA+TGG | - | tig0028517:50997-51016 | None:intergenic | 20.0% |
| !!! | AATAACACTTTACTTTTCAT+TGG | - | tig0028517:51017-51036 | None:intergenic | 20.0% |
| !! | AATAAGACAGTAAATACTAA+AGG | - | tig0028517:51128-51147 | None:intergenic | 20.0% |
| !! | TTTGAAAACATGTCAATATT+CGG | + | tig0028517:51332-51351 | Msa1438200:intron | 20.0% |
| !! | AGAAATACAAAATCATGATA+AGG | - | tig0028517:51467-51486 | None:intergenic | 20.0% |
| !!! | TTTTGTATTTCTTAATCATC+AGG | + | tig0028517:51475-51494 | Msa1438200:intron | 20.0% |
| !!! | TTTTTTAGTTGTATGATGAT+TGG | + | tig0028517:52208-52227 | Msa1438200:intron | 20.0% |
| !!! | GAAGCAAATTTTATTTCTAT+TGG | - | tig0028517:52541-52560 | None:intergenic | 20.0% |
| !!! | AGGAGTATTATTAGAAATCA+TGG | + | tig0028517:46727-46746 | Msa1438200:intron | 25.0% |
| ! | ATTAGAAATCATGGAATCAT+AGG | + | tig0028517:46736-46755 | Msa1438200:intron | 25.0% |
| ! | TTAGAAATCATGGAATCATA+GGG | + | tig0028517:46737-46756 | Msa1438200:intron | 25.0% |
| ! | GATAGTCATAATGATTCAAA+AGG | + | tig0028517:46924-46943 | Msa1438200:CDS | 25.0% |
| !!! | AGAAAAGGATAGTTTTAATG+CGG | + | tig0028517:46959-46978 | Msa1438200:CDS | 25.0% |
| ! | AAGAATCAGAAAAATACCAT+AGG | + | tig0028517:47006-47025 | Msa1438200:CDS | 25.0% |
| ! | AGAATCAGAAAAATACCATA+GGG | + | tig0028517:47007-47026 | Msa1438200:CDS | 25.0% |
| ! | AGAGAAAGATAGAAAAAGAA+AGG | + | tig0028517:47214-47233 | Msa1438200:CDS | 25.0% |
| ! | CAATATACAAGTTAGCAATA+CGG | + | tig0028517:47292-47311 | Msa1438200:CDS | 25.0% |
| ! | AATATACAAGTTAGCAATAC+GGG | + | tig0028517:47293-47312 | Msa1438200:CDS | 25.0% |
| ! | TAAAGACAAGAGAAAAGAAA+GGG | + | tig0028517:47628-47647 | Msa1438200:CDS | 25.0% |
| ! | TTGAAGCTTCATAATTACAT+TGG | + | tig0028517:47987-48006 | Msa1438200:intron | 25.0% |
| ! | TACTAGAATGAATATAACGA+AGG | - | tig0028517:48075-48094 | None:intergenic | 25.0% |
| !! | TATATAAGTTCTGGTATTTC+AGG | + | tig0028517:48289-48308 | Msa1438200:CDS | 25.0% |
| ! | AAGAAAAAATGAAGCTTACT+TGG | - | tig0028517:48492-48511 | None:intergenic | 25.0% |
| !! | GCATTCCTTTTAATACTTAA+AGG | + | tig0028517:48954-48973 | Msa1438200:intron | 25.0% |
| !!! | AACTCTAAAACTAATAATCC+GGG | + | tig0028517:49117-49136 | Msa1438200:intron | 25.0% |
| ! | GAAGATTCAGATAAATCAAA+AGG | - | tig0028517:49232-49251 | None:intergenic | 25.0% |
| ! | TGTAAGATATAAGTATAGGA+TGG | - | tig0028517:49433-49452 | None:intergenic | 25.0% |
| ! | ATGCTGTAAGATATAAGTAT+AGG | - | tig0028517:49437-49456 | None:intergenic | 25.0% |
| ! | GCTTAGTGATTACTATTATA+AGG | + | tig0028517:49488-49507 | Msa1438200:intron | 25.0% |
| ! | TGATTTCTATGCAAACTTAA+TGG | - | tig0028517:49548-49567 | None:intergenic | 25.0% |
| !! | TTGAACTTGTTCATAATGTT+AGG | + | tig0028517:49661-49680 | Msa1438200:intron | 25.0% |
| ! | TATGCTATTATGAAAATCTG+AGG | + | tig0028517:49725-49744 | Msa1438200:intron | 25.0% |
| ! | AGAGTTACATTATTGTATTC+AGG | + | tig0028517:49956-49975 | Msa1438200:intron | 25.0% |
| !! | ATATTTACTTGCCTTTTAAG+TGG | + | tig0028517:50257-50276 | Msa1438200:intron | 25.0% |
| !! | ACTGAGAGTATATTTAGAAT+CGG | + | tig0028517:50292-50311 | Msa1438200:intron | 25.0% |
| ! | ATTGTGAAGGTAATATCAAA+AGG | + | tig0028517:50485-50504 | Msa1438200:intron | 25.0% |
| ! | CAAACAGTTAGATATTAAGT+TGG | - | tig0028517:50536-50555 | None:intergenic | 25.0% |
| !!! | GTATTTACTGTCTTATTTTG+CGG | + | tig0028517:51131-51150 | Msa1438200:intron | 25.0% |
| ! | CATCTGTTATCTAATACTAT+AGG | - | tig0028517:51393-51412 | None:intergenic | 25.0% |
| ! | TACAAAATCATGATAAGGAT+AGG | - | tig0028517:51462-51481 | None:intergenic | 25.0% |
| ! | TTCAACAAAATAACAATCAG+TGG | - | tig0028517:51715-51734 | None:intergenic | 25.0% |
| !! | CAGAATATATTTTTGCCCTA+TGG | - | tig0028517:47025-47044 | None:intergenic | 30.0% |
| AAAATATATTCTGATCCTCC+TGG | + | tig0028517:47032-47051 | Msa1438200:CDS | 30.0% | |
| ! | GAGAACAAAATTGATTCCAA+AGG | + | tig0028517:47176-47195 | Msa1438200:CDS | 30.0% |
| AGCAAGATAAAGATGTTGAA+AGG | + | tig0028517:47399-47418 | Msa1438200:CDS | 30.0% | |
| AAGATAAAGATGTTGAAAGG+TGG | + | tig0028517:47402-47421 | Msa1438200:CDS | 30.0% | |
| AGATAAAGATGTTGAAAGGT+GGG | + | tig0028517:47403-47422 | Msa1438200:CDS | 30.0% | |
| ! | GCTATTTGAAACATCTTTCT+CGG | - | tig0028517:47516-47535 | None:intergenic | 30.0% |
| CTAAAGACAAGAGAAAAGAA+AGG | + | tig0028517:47627-47646 | Msa1438200:CDS | 30.0% | |
| AGTGAAGTCTATAACTATAG+TGG | + | tig0028517:47752-47771 | Msa1438200:CDS | 30.0% | |
| TAGCAAACAATGAAACATGA+AGG | - | tig0028517:47887-47906 | None:intergenic | 30.0% | |
| TTCATTCTAGTAACTATAGC+TGG | + | tig0028517:48083-48102 | Msa1438200:intron | 30.0% | |
| !! | ATGCTATCATTTTGTTTCAG+TGG | + | tig0028517:48131-48150 | Msa1438200:CDS | 30.0% |
| ATTGGAAAAAGCAAAGGAAA+AGG | - | tig0028517:48270-48289 | None:intergenic | 30.0% | |
| ATTTGTAGCAGTAACATACT+CGG | - | tig0028517:48467-48486 | None:intergenic | 30.0% | |
| ACAATCAAAGGCTCAATTAA+AGG | - | tig0028517:48818-48837 | None:intergenic | 30.0% | |
| ATTGAGCCTTTGATTGTAAT+TGG | + | tig0028517:48821-48840 | Msa1438200:intron | 30.0% | |
| CAAGGCCTTTAAGTATTAAA+AGG | - | tig0028517:48962-48981 | None:intergenic | 30.0% | |
| ! | ATTGCTTCCTTTGTTTATGA+AGG | + | tig0028517:49067-49086 | Msa1438200:intron | 30.0% |
| TTACTGTCCTTCATAAACAA+AGG | - | tig0028517:49077-49096 | None:intergenic | 30.0% | |
| ! | TCAGATAAATCAAAAGGTAC+CGG | - | tig0028517:49226-49245 | None:intergenic | 30.0% |
| AATTACGCAGTCTTAAATAG+AGG | - | tig0028517:49274-49293 | None:intergenic | 30.0% | |
| GGTTTAAAAATAGCAAGCAA+GGG | - | tig0028517:49353-49372 | None:intergenic | 30.0% | |
| TGGTTTAAAAATAGCAAGCA+AGG | - | tig0028517:49354-49373 | None:intergenic | 30.0% | |
| !!! | AGTTCAGACCTATAGTTTTT+TGG | - | tig0028517:49374-49393 | None:intergenic | 30.0% |
| ! | TATTATGAAAATCTGAGGCT+TGG | + | tig0028517:49730-49749 | Msa1438200:intron | 30.0% |
| ! | AGGGTGCATAAATTAGTTTA+CGG | - | tig0028517:49774-49793 | None:intergenic | 30.0% |
| TAAATCTTCATGCCAAACTA+GGG | - | tig0028517:49793-49812 | None:intergenic | 30.0% | |
| ATAAATCTTCATGCCAAACT+AGG | - | tig0028517:49794-49813 | None:intergenic | 30.0% | |
| ! | TGGTATGTCTTTTACAAAAC+TGG | + | tig0028517:50037-50056 | Msa1438200:intron | 30.0% |
| ! | TTTTACAAAACTGGTGCATT+AGG | + | tig0028517:50046-50065 | Msa1438200:intron | 30.0% |
| TTTACAAAACTGGTGCATTA+GGG | + | tig0028517:50047-50066 | Msa1438200:intron | 30.0% | |
| ! | TGTATGGACATACAATCTTT+TGG | - | tig0028517:50212-50231 | None:intergenic | 30.0% |
| TAATAGTGATTATGGCTGTA+TGG | - | tig0028517:50228-50247 | None:intergenic | 30.0% | |
| CTTAGTCATTACCACTTAAA+AGG | - | tig0028517:50271-50290 | None:intergenic | 30.0% | |
| ! | GTATATTTAGAATCGGATTC+AGG | + | tig0028517:50299-50318 | Msa1438200:intron | 30.0% |
| CTGTTTGTTTATCTTCAGAA+AGG | + | tig0028517:50549-50568 | Msa1438200:intron | 30.0% | |
| TTTGTTTATCTTCAGAAAGG+AGG | + | tig0028517:50552-50571 | Msa1438200:intron | 30.0% | |
| !! | CTGTTATGTTGTTTCATAGA+TGG | + | tig0028517:50756-50775 | Msa1438200:intron | 30.0% |
| ! | GTTGGTTATGTTCTATTTTC+TGG | + | tig0028517:50884-50903 | Msa1438200:intron | 30.0% |
| !! | TCATTTTTCAGAATGCATTG+CGG | + | tig0028517:51157-51176 | Msa1438200:intron | 30.0% |
| AATCTAATATTGTGCTGTGT+TGG | + | tig0028517:51268-51287 | Msa1438200:intron | 30.0% | |
| !! | AAAGGGAGAAGTTTTGTATT+TGG | + | tig0028517:51569-51588 | Msa1438200:CDS | 30.0% |
| TAAGTTCAAAGAATTCGTGA+AGG | + | tig0028517:51837-51856 | Msa1438200:intron | 30.0% | |
| TGGATATTTGCACTATGATT+AGG | + | tig0028517:52228-52247 | Msa1438200:intron | 30.0% | |
| TCTTTCGCTTCTACTATTAA+GGG | + | tig0028517:52394-52413 | Msa1438200:three_prime_UTR | 30.0% | |
| GACTCTTCATGAGATTTCTT+AGG | - | tig0028517:46629-46648 | None:intergenic | 35.0% | |
| !! | CCTTTGAAACTGAAGAAAGA+CGG | - | tig0028517:46710-46729 | None:intergenic | 35.0% |
| GATGTTTGGAGAAGTAAGAA+AGG | + | tig0028517:46821-46840 | Msa1438200:CDS | 35.0% | |
| !! | TTTTCACTTTTAGCACTCTG+AGG | - | tig0028517:46849-46868 | None:intergenic | 35.0% |
| ! | TCAGAGTGCTAAAAGTGAAA+AGG | + | tig0028517:46848-46867 | Msa1438200:CDS | 35.0% |
| AGGTGATACTAAGACAGAAA+AGG | + | tig0028517:46944-46963 | Msa1438200:CDS | 35.0% | |
| ATTCTTTCCAATCCAAGTGA+AGG | - | tig0028517:46992-47011 | None:intergenic | 35.0% | |
| TTTAGATCTATCGTCACCTT+TGG | - | tig0028517:47195-47214 | None:intergenic | 35.0% | |
| AAAGAAAGGAAGTGAAGCAT+CGG | + | tig0028517:47228-47247 | Msa1438200:CDS | 35.0% | |
| GTACAAGTAAGCAATACGAT+TGG | + | tig0028517:47356-47375 | Msa1438200:CDS | 35.0% | |
| ACATCTTTATCTTGCTTCAG+AGG | - | tig0028517:47395-47414 | None:intergenic | 35.0% | |
| AGATGTTTCAAATAGCGAGA+AGG | + | tig0028517:47520-47539 | Msa1438200:CDS | 35.0% | |
| TGAACAAGAAACTGTCTTAC+CGG | + | tig0028517:47571-47590 | Msa1438200:CDS | 35.0% | |
| GTGATCTTTGTATCCTCTTA+CGG | - | tig0028517:47784-47803 | None:intergenic | 35.0% | |
| GTAAGAGGATACAAAGATCA+CGG | + | tig0028517:47783-47802 | Msa1438200:CDS | 35.0% | |
| TAAGAGGATACAAAGATCAC+GGG | + | tig0028517:47784-47803 | Msa1438200:CDS | 35.0% | |
| ACAATGAAACATGAAGGAAG+AGG | - | tig0028517:47881-47900 | None:intergenic | 35.0% | |
| GCCAGCAATTGATTATCAAT+GGG | - | tig0028517:48198-48217 | None:intergenic | 35.0% | |
| TGCCAGCAATTGATTATCAA+TGG | - | tig0028517:48199-48218 | None:intergenic | 35.0% | |
| ! | TGGTATTTCAGGTAAAGTAG+AGG | + | tig0028517:48300-48319 | Msa1438200:CDS | 35.0% |
| ! | AATGGTGAAAGCTCTAACAA+TGG | + | tig0028517:48415-48434 | Msa1438200:CDS | 35.0% |
| ! | TCTCATCAATTGCGTTCTTT+TGG | + | tig0028517:48533-48552 | Msa1438200:intron | 35.0% |
| GAATGGCCAATTACAATCAA+AGG | - | tig0028517:48830-48849 | None:intergenic | 35.0% | |
| !! | ATTAGAGGCCTTTTCTAAAG+AGG | + | tig0028517:48880-48899 | Msa1438200:intron | 35.0% |
| ! | ATAAGCTGCCTCTTTAGAAA+AGG | - | tig0028517:48891-48910 | None:intergenic | 35.0% |
| ATGTTCAACAGTAAGGAACA+AGG | - | tig0028517:48980-48999 | None:intergenic | 35.0% | |
| ACAGTGAATGTTCAACAGTA+AGG | - | tig0028517:48987-49006 | None:intergenic | 35.0% | |
| TACTGTTGAACATTCACTGT+TGG | + | tig0028517:48987-49006 | Msa1438200:intron | 35.0% | |
| !! | AACTTGCTGATATCTGTGTT+TGG | + | tig0028517:49022-49041 | Msa1438200:intron | 35.0% |
| ! | ACTTGCTGATATCTGTGTTT+GGG | + | tig0028517:49023-49042 | Msa1438200:intron | 35.0% |
| AATAATCCGGGATGCTAATA+TGG | + | tig0028517:49129-49148 | Msa1438200:intron | 35.0% | |
| TCCATATTCTGCCAATAATC+CGG | + | tig0028517:49204-49223 | Msa1438200:intron | 35.0% | |
| !! | ATCAAAAGGTACCGGATTAT+TGG | - | tig0028517:49218-49237 | None:intergenic | 35.0% |
| CTTAAATAGAGGTGGAACTA+TGG | - | tig0028517:49263-49282 | None:intergenic | 35.0% | |
| AGGAAGACTTCAAGAATAAG+AGG | - | tig0028517:49317-49336 | None:intergenic | 35.0% | |
| CTTATTCTTGAAGTCTTCCT+TGG | + | tig0028517:49317-49336 | Msa1438200:intron | 35.0% | |
| CTATGCAAACTTAATGGCTA+TGG | - | tig0028517:49542-49561 | None:intergenic | 35.0% | |
| AGATTTGACTGACACTAAGA+TGG | - | tig0028517:49629-49648 | None:intergenic | 35.0% | |
| ATCTTAGTGTCAGTCAAATC+TGG | + | tig0028517:49628-49647 | Msa1438200:intron | 35.0% | |
| TTGTTCATAATGTTAGGCGA+TGG | + | tig0028517:49667-49686 | Msa1438200:intron | 35.0% | |
| ! | GTGCATAAATTAGTTTACGG+TGG | - | tig0028517:49771-49790 | None:intergenic | 35.0% |
| CTAATTTATGCACCCTAGTT+TGG | + | tig0028517:49778-49797 | Msa1438200:intron | 35.0% | |
| CATTATTGTATTCAGGTCAG+AGG | + | tig0028517:49963-49982 | Msa1438200:intron | 35.0% | |
| ! | TAGGGTGTTCTTACATATAC+TGG | + | tig0028517:50065-50084 | Msa1438200:intron | 35.0% |
| ! | ATGGACATACAATCTTTTGG+AGG | - | tig0028517:50209-50228 | None:intergenic | 35.0% |
| ! | CAATAGTTGATGTATGTGTG+AGG | - | tig0028517:50602-50621 | None:intergenic | 35.0% |
| ! | TTATTGAGAAGCACAAATGC+AGG | - | tig0028517:50794-50813 | None:intergenic | 35.0% |
| TTCTATTTGGACTGTTCAGT+TGG | + | tig0028517:50866-50885 | Msa1438200:intron | 35.0% | |
| ! | TTGTGCTTTGTTATGCTTTC+AGG | + | tig0028517:50916-50935 | Msa1438200:intron | 35.0% |
| AGACAGTAAATACTAAAGGC+CGG | - | tig0028517:51124-51143 | None:intergenic | 35.0% | |
| CAACATAAACTACCATACCA+AGG | - | tig0028517:51234-51253 | None:intergenic | 35.0% | |
| ! | TATAAGCATTGTAGCAGACA+AGG | + | tig0028517:51509-51528 | Msa1438200:CDS | 35.0% |
| ! | ATAAGCATTGTAGCAGACAA+GGG | + | tig0028517:51510-51529 | Msa1438200:CDS | 35.0% |
| ACATCTGCTCGATTGAAAAA+GGG | + | tig0028517:51552-51571 | Msa1438200:CDS | 35.0% | |
| ! | TTTTCACCATTTGCAGAATG+TGG | - | tig0028517:52020-52039 | None:intergenic | 35.0% |
| GCATCAATCATAACATGATC+AGG | - | tig0028517:52050-52069 | None:intergenic | 35.0% | |
| ATGTTATGATTGATGCGTTC+CGG | + | tig0028517:52054-52073 | Msa1438200:CDS | 35.0% | |
| TTTGCACTATGATTAGGTGT+TGG | + | tig0028517:52234-52253 | Msa1438200:intron | 35.0% | |
| GATATACAATGGTCTCAAAC+TGG | + | tig0028517:52277-52296 | Msa1438200:CDS | 35.0% | |
| AAAGGAATATACCCTTGCAA+GGG | + | tig0028517:52315-52334 | Msa1438200:CDS | 35.0% | |
| GTCTTTCGCTTCTACTATTA+AGG | + | tig0028517:52393-52412 | Msa1438200:three_prime_UTR | 35.0% | |
| TTCTACTATTAAGGGAGTGA+TGG | + | tig0028517:52402-52421 | Msa1438200:three_prime_UTR | 35.0% | |
| CCGTCTTTCTTCAGTTTCAA+AGG | + | tig0028517:46707-46726 | Msa1438200:CDS | 40.0% | |
| ATGGAATCATAGGGAATCCA+AGG | + | tig0028517:46746-46765 | Msa1438200:intron | 40.0% | |
| ATAGGGAATCCAAGGATAGT+AGG | + | tig0028517:46754-46773 | Msa1438200:intron | 40.0% | |
| CCAAGGATAGTAGGATATAC+CGG | + | tig0028517:46763-46782 | Msa1438200:intron | 40.0% | |
| TCGTATCACGATTCTCAAAC+CGG | - | tig0028517:46785-46804 | None:intergenic | 40.0% | |
| TGATACGAAGACTGAGAAGA+AGG | + | tig0028517:46797-46816 | Msa1438200:intron | 40.0% | |
| ACTGAGAAGAAGGAGATGTT+TGG | + | tig0028517:46807-46826 | Msa1438200:CDS | 40.0% | |
| GATGCACATGTTGAAGTTAG+AGG | + | tig0028517:46870-46889 | Msa1438200:CDS | 40.0% | |
| AGTTAGAGGAGATGACAACA+AGG | + | tig0028517:46884-46903 | Msa1438200:CDS | 40.0% | |
| ACAAGGATGGTAGACATGAT+CGG | + | tig0028517:46901-46920 | Msa1438200:CDS | 40.0% | |
| !!! | GATAGTTTTAATGCGGCTAG+CGG | + | tig0028517:46966-46985 | Msa1438200:CDS | 40.0% |
| TGTGTATTCCCACGTAACAT+GGG | - | tig0028517:47077-47096 | None:intergenic | 40.0% | |
| TTGTGTATTCCCACGTAACA+TGG | - | tig0028517:47078-47097 | None:intergenic | 40.0% | |
| ATGTTACGTGGGAATACACA+AGG | + | tig0028517:47077-47096 | Msa1438200:CDS | 40.0% | |
| GAATACACAAGGTTCAGTTG+AGG | + | tig0028517:47088-47107 | Msa1438200:CDS | 40.0% | |
| ! | AAGAAAGGAAGTGAAGCATC+GGG | + | tig0028517:47229-47248 | Msa1438200:CDS | 40.0% |
| GTAAGCAATACGATTGGTGA+TGG | + | tig0028517:47362-47381 | Msa1438200:CDS | 40.0% | |
| AGGAAAAGGATCAGATGAAG+AGG | + | tig0028517:47474-47493 | Msa1438200:CDS | 40.0% | |
| GGAAAAGGATCAGATGAAGA+GGG | + | tig0028517:47475-47494 | Msa1438200:CDS | 40.0% | |
| GGTAAGACAGTTTCTTGTTC+AGG | - | tig0028517:47572-47591 | None:intergenic | 40.0% | |
| ! | TCTTTTTGCTTCTTCTGCTC+CGG | - | tig0028517:47593-47612 | None:intergenic | 40.0% |
| ! | GAAAGGGAAGCTGATTTAGT+AGG | + | tig0028517:47644-47663 | Msa1438200:CDS | 40.0% |
| ! | AAGCTGATTTAGTAGGAGAC+AGG | + | tig0028517:47651-47670 | Msa1438200:CDS | 40.0% |
| TTTGACAAGGAATCAGACGA+TGG | + | tig0028517:47695-47714 | Msa1438200:CDS | 40.0% | |
| AAGAGGATACAAAGATCACG+GGG | + | tig0028517:47785-47804 | Msa1438200:CDS | 40.0% | |
| ! | AAAGTACCCTTCGTTGTCTT+GGG | - | tig0028517:47855-47874 | None:intergenic | 40.0% |
| TAGCTGGACATATATGTTGC+AGG | + | tig0028517:48099-48118 | Msa1438200:intron | 40.0% | |
| CATATATGTTGCAGGTCTCA+AGG | + | tig0028517:48107-48126 | Msa1438200:intron | 40.0% | |
| TTGTTTCAGTGGCTTCATGA+AGG | + | tig0028517:48142-48161 | Msa1438200:CDS | 40.0% | |
| ! | GTGCCGGCAGAAATTATTAT+TGG | + | tig0028517:48172-48191 | Msa1438200:CDS | 40.0% |
| GGGCCAATAATAATTTCTGC+CGG | - | tig0028517:48178-48197 | None:intergenic | 40.0% | |
| ! | GCCCATTGATAATCAATTGC+TGG | + | tig0028517:48194-48213 | Msa1438200:CDS | 40.0% |
| TGCAAGAGCTGATAAAGTTG+TGG | + | tig0028517:48356-48375 | Msa1438200:CDS | 40.0% | |
| AGAGCTGATAAAGTTGTGGA+CGG | + | tig0028517:48360-48379 | Msa1438200:CDS | 40.0% | |
| ATATCCGAATTTCCAGAGTG+GGG | - | tig0028517:48441-48460 | None:intergenic | 40.0% | |
| GATATCCGAATTTCCAGAGT+GGG | - | tig0028517:48442-48461 | None:intergenic | 40.0% | |
| ! | CATCAATTGCGTTCTTTTGG+TGG | + | tig0028517:48536-48555 | Msa1438200:intron | 40.0% |
| GCAAGCAAAAGATGAAGCAA+AGG | - | tig0028517:48682-48701 | None:intergenic | 40.0% | |
| CCATATCCATATTAGCATCC+CGG | - | tig0028517:49138-49157 | None:intergenic | 40.0% | |
| ACCGGATTATTGGCAGAATA+TGG | - | tig0028517:49208-49227 | None:intergenic | 40.0% | |
| TACGCAGTCTTAAATAGAGG+TGG | - | tig0028517:49271-49290 | None:intergenic | 40.0% | |
| GCAAGGGACTTAAATTTCCA+AGG | - | tig0028517:49337-49356 | None:intergenic | 40.0% | |
| ! | TTGGACTAGATTGACTAGTC+TGG | + | tig0028517:49583-49602 | Msa1438200:intron | 40.0% |
| TATTGTATTCAGGTCAGAGG+CGG | + | tig0028517:49966-49985 | Msa1438200:intron | 40.0% | |
| AGACATACCAGCAACAAGAT+CGG | - | tig0028517:50027-50046 | None:intergenic | 40.0% | |
| AAGAATTACGCGCAACCATT+CGG | + | tig0028517:50177-50196 | Msa1438200:CDS | 40.0% | |
| GCTGCAGTTATCGAATTGAA+CGG | + | tig0028517:50456-50475 | Msa1438200:CDS | 40.0% | |
| GTTTATCTTCAGAAAGGAGG+TGG | + | tig0028517:50555-50574 | Msa1438200:intron | 40.0% | |
| ATAGATGCTGAAACAAACCG+AGG | - | tig0028517:50679-50698 | None:intergenic | 40.0% | |
| ! | TGCTTTGTTATGCTTTCAGG+TGG | + | tig0028517:50919-50938 | Msa1438200:intron | 40.0% |
| GACAGTAAATACTAAAGGCC+GGG | - | tig0028517:51123-51142 | None:intergenic | 40.0% | |
| ACAATCTTTGCAATGAGCCT+TGG | + | tig0028517:51214-51233 | Msa1438200:CDS | 40.0% | |
| AATCGAGCAGATGTGTATTG+TGG | - | tig0028517:51546-51565 | None:intergenic | 40.0% | |
| CACATCTGCTCGATTGAAAA+AGG | + | tig0028517:51551-51570 | Msa1438200:CDS | 40.0% | |
| !!! | AGATACGAGCTTTGTTTTGC+TGG | + | tig0028517:51921-51940 | Msa1438200:intron | 40.0% |
| !! | TTGTTTTGCTGGAGAGAAGT+TGG | + | tig0028517:51932-51951 | Msa1438200:CDS | 40.0% |
| ATTGTGCGCATCAATTTCTG+TGG | - | tig0028517:52104-52123 | None:intergenic | 40.0% | |
| CAGAAATTGATGCGCACAAT+TGG | + | tig0028517:52104-52123 | Msa1438200:CDS | 40.0% | |
| AATACCTCGACATGTTCAAG+AGG | - | tig0028517:52140-52159 | None:intergenic | 40.0% | |
| ! | TGGACTGGGAAGATATACAA+TGG | + | tig0028517:52266-52285 | Msa1438200:CDS | 40.0% |
| AATGGTCTCAAACTGGTGTT+TGG | + | tig0028517:52284-52303 | Msa1438200:CDS | 40.0% | |
| GAAAGGAATATACCCTTGCA+AGG | + | tig0028517:52314-52333 | Msa1438200:CDS | 40.0% | |
| TACTATTAAGGGAGTGATGG+TGG | + | tig0028517:52405-52424 | Msa1438200:three_prime_UTR | 40.0% | |
| ACTATTAAGGGAGTGATGGT+GGG | + | tig0028517:52406-52425 | Msa1438200:three_prime_UTR | 40.0% | |
| AAGAAAGACGGCGCCAATTT+CGG | - | tig0028517:46698-46717 | None:intergenic | 45.0% | |
| CCGGTATATCCTACTATCCT+TGG | - | tig0028517:46766-46785 | None:intergenic | 45.0% | |
| AGAGGAGATGACAACAAGGA+TGG | + | tig0028517:46888-46907 | Msa1438200:CDS | 45.0% | |
| CAAGGATGGTAGACATGATC+GGG | + | tig0028517:46902-46921 | Msa1438200:CDS | 45.0% | |
| ACACAAGGTTCAGTTGAGGT+TGG | + | tig0028517:47092-47111 | Msa1438200:CDS | 45.0% | |
| AGGTTCAGTTGAGGTTGGAA+AGG | + | tig0028517:47097-47116 | Msa1438200:CDS | 45.0% | |
| AGAGTTCATCAGCAGAACCA+AGG | + | tig0028517:47120-47139 | Msa1438200:CDS | 45.0% | |
| GAGTTCATCAGCAGAACCAA+GGG | + | tig0028517:47121-47140 | Msa1438200:CDS | 45.0% | |
| TTAGCAATACGGGTAGTGAC+TGG | + | tig0028517:47303-47322 | Msa1438200:CDS | 45.0% | |
| AAGATGTTGAAAGGTGGGAG+AGG | + | tig0028517:47408-47427 | Msa1438200:CDS | 45.0% | |
| AGATGTTGAAAGGTGGGAGA+GGG | + | tig0028517:47409-47428 | Msa1438200:CDS | 45.0% | |
| ! | GAAGGAACCTGTTGATGGAT+CGG | + | tig0028517:47538-47557 | Msa1438200:CDS | 45.0% |
| AGAGGATACAAAGATCACGG+GGG | + | tig0028517:47786-47805 | Msa1438200:CDS | 45.0% | |
| !! | GAAAGTACCCTTCGTTGTCT+TGG | - | tig0028517:47856-47875 | None:intergenic | 45.0% |
| CGATATCCGAATTTCCAGAG+TGG | - | tig0028517:48443-48462 | None:intergenic | 45.0% | |
| CCGGGATGCTAATATGGATA+TGG | + | tig0028517:49135-49154 | Msa1438200:intron | 45.0% | |
| TTAGTTTACGGTGGTAGCAC+TGG | - | tig0028517:49762-49781 | None:intergenic | 45.0% | |
| TATGACTCCGATCTTGTTGC+TGG | + | tig0028517:50017-50036 | Msa1438200:CDS | 45.0% | |
| TGCACAGTTCTCATGCATAC+AGG | + | tig0028517:50113-50132 | Msa1438200:intron | 45.0% | |
| AATTCTTGTATGGCTGCAGG+AGG | - | tig0028517:50164-50183 | None:intergenic | 45.0% | |
| CGTAATTCTTGTATGGCTGC+AGG | - | tig0028517:50167-50186 | None:intergenic | 45.0% | |
| GGTTGCGCGTAATTCTTGTA+TGG | - | tig0028517:50174-50193 | None:intergenic | 45.0% | |
| AGAATTACGCGCAACCATTC+GGG | + | tig0028517:50178-50197 | Msa1438200:CDS | 45.0% | |
| !! | AATTTTAGCACCCCAAGCAC+GGG | - | tig0028517:50435-50454 | None:intergenic | 45.0% |
| !! | CAATTTTAGCACCCCAAGCA+CGG | - | tig0028517:50436-50455 | None:intergenic | 45.0% |
| !! | TGAACGGTGTTGCATTGTGA+AGG | + | tig0028517:50472-50491 | Msa1438200:CDS | 45.0% |
| GTTGATGTATGTGTGAGGCA+AGG | - | tig0028517:50597-50616 | None:intergenic | 45.0% | |
| TACCATGCTTCAACACGTGT+AGG | - | tig0028517:51073-51092 | None:intergenic | 45.0% | |
| CTTTGCAATGAGCCTTGGTA+TGG | + | tig0028517:51219-51238 | Msa1438200:intron | 45.0% | |
| CAATATTCGGCTATGCAACG+TGG | + | tig0028517:51345-51364 | Msa1438200:intron | 45.0% | |
| ATTTGGAGACACATACGACC+AGG | + | tig0028517:51586-51605 | Msa1438200:CDS | 45.0% | |
| TCAGTTAAAAGAACGCCAGG+AGG | - | tig0028517:51888-51907 | None:intergenic | 45.0% | |
| GACTCAGTTAAAAGAACGCC+AGG | - | tig0028517:51891-51910 | None:intergenic | 45.0% | |
| CACCATCCACATTCTGCAAA+TGG | + | tig0028517:52011-52030 | Msa1438200:CDS | 45.0% | |
| CACCATTTGCAGAATGTGGA+TGG | - | tig0028517:52016-52035 | None:intergenic | 45.0% | |
| TTATGATTGATGCGTTCCGG+TGG | + | tig0028517:52057-52076 | Msa1438200:CDS | 45.0% | |
| !! | GCACTATGATTAGGTGTTGG+AGG | + | tig0028517:52237-52256 | Msa1438200:intron | 45.0% |
| !! | TTAGGTGTTGGAGGAGAACT+TGG | + | tig0028517:52246-52265 | Msa1438200:intron | 45.0% |
| CAAACTGGTGTTTGGATTGC+AGG | + | tig0028517:52292-52311 | Msa1438200:CDS | 45.0% | |
| TGGTGTTTGGATTGCAGGAA+AGG | + | tig0028517:52297-52316 | Msa1438200:CDS | 45.0% | |
| CAAGAAATGCACCCTTGCAA+GGG | - | tig0028517:52329-52348 | None:intergenic | 45.0% | |
| ACAAGAAATGCACCCTTGCA+AGG | - | tig0028517:52330-52349 | None:intergenic | 45.0% | |
| TATGCACCTGCGTCTTCATG+CGG | - | tig0028517:46674-46693 | None:intergenic | 50.0% | |
| CGCAGGTGCATATCCGAAAT+TGG | + | tig0028517:46682-46701 | Msa1438200:CDS | 50.0% | |
| TCAGCAGAACCAAGGGAGTA+TGG | + | tig0028517:47128-47147 | Msa1438200:CDS | 50.0% | |
| ATCAGATGAAGAGGGAGTCG+TGG | + | tig0028517:47483-47502 | Msa1438200:CDS | 50.0% | |
| ATGAAGAGGGAGTCGTGGAA+TGG | + | tig0028517:47488-47507 | Msa1438200:CDS | 50.0% | |
| AGCGAGAAGGAACCTGTTGA+TGG | + | tig0028517:47533-47552 | Msa1438200:CDS | 50.0% | |
| ! | ACCTGTTGATGGATCGGCTA+AGG | + | tig0028517:47544-47563 | Msa1438200:CDS | 50.0% |
| ACCTTAGCCGATCCATCAAC+AGG | - | tig0028517:47548-47567 | None:intergenic | 50.0% | |
| ACAGGTCTGATAAGCGCAGT+AGG | + | tig0028517:47669-47688 | Msa1438200:CDS | 50.0% | |
| CAGGTCTGATAAGCGCAGTA+GGG | + | tig0028517:47670-47689 | Msa1438200:CDS | 50.0% | |
| AGGTCTGATAAGCGCAGTAG+GGG | + | tig0028517:47671-47690 | Msa1438200:CDS | 50.0% | |
| TCAGACGATGGATGTGCTGA+TGG | + | tig0028517:47707-47726 | Msa1438200:CDS | 50.0% | |
| ! | CAGACGATGGATGTGCTGAT+GGG | + | tig0028517:47708-47727 | Msa1438200:CDS | 50.0% |
| ! | ATGGATGTGCTGATGGGCAA+GGG | + | tig0028517:47714-47733 | Msa1438200:CDS | 50.0% |
| TGGGCAAGGGGCAATAGAAA+AGG | + | tig0028517:47727-47746 | Msa1438200:CDS | 50.0% | |
| ATAGTGGTCAGCACCGTAAG+AGG | + | tig0028517:47768-47787 | Msa1438200:CDS | 50.0% | |
| GTGGCTTCATGAAGGAACAC+TGG | + | tig0028517:48150-48169 | Msa1438200:CDS | 50.0% | |
| TCATGAAGGAACACTGGTGC+CGG | + | tig0028517:48156-48175 | Msa1438200:CDS | 50.0% | |
| TTGCTGGCACTGTTTAGCTG+TGG | + | tig0028517:48210-48229 | Msa1438200:CDS | 50.0% | |
| GGCACTGTTTAGCTGTGGAA+TGG | + | tig0028517:48215-48234 | Msa1438200:CDS | 50.0% | |
| ! | ATGGCCCCACTCTGGAAATT+CGG | + | tig0028517:48434-48453 | Msa1438200:CDS | 50.0% |
| CTGGTCCAAGTAACTGCAGT+CGG | + | tig0028517:49602-49621 | Msa1438200:intron | 50.0% | |
| TGGTCCAAGTAACTGCAGTC+GGG | + | tig0028517:49603-49622 | Msa1438200:intron | 50.0% | |
| TGTTAGGCGATGGAGCTGAA+TGG | + | tig0028517:49677-49696 | Msa1438200:intron | 50.0% | |
| GTTAGGCGATGGAGCTGAAT+GGG | + | tig0028517:49678-49697 | Msa1438200:intron | 50.0% | |
| TTAGGCGATGGAGCTGAATG+GGG | + | tig0028517:49679-49698 | Msa1438200:intron | 50.0% | |
| !! | TTTTGGAGGTAGCACCCGAA+TGG | - | tig0028517:50195-50214 | None:intergenic | 50.0% |
| ACAATGTACGTTCCCGTGCT+TGG | + | tig0028517:50420-50439 | Msa1438200:CDS | 50.0% | |
| CAATGTACGTTCCCGTGCTT+GGG | + | tig0028517:50421-50440 | Msa1438200:CDS | 50.0% | |
| AATGTACGTTCCCGTGCTTG+GGG | + | tig0028517:50422-50441 | Msa1438200:CDS | 50.0% | |
| ! | CGTGCTTGGGGTGCTAAAAT+TGG | + | tig0028517:50434-50453 | Msa1438200:CDS | 50.0% |
| GTCCTACACGTGTTGAAGCA+TGG | + | tig0028517:51068-51087 | Msa1438200:intron | 50.0% | |
| GTCACGTAGAAAAAGCCTCC+TGG | + | tig0028517:51870-51889 | Msa1438200:intron | 50.0% | |
| ! | TGCTGGAGAGAAGTTGGTCA+AGG | + | tig0028517:51938-51957 | Msa1438200:CDS | 50.0% |
| GCTTCTTACAACGAGACCAC+CGG | - | tig0028517:52076-52095 | None:intergenic | 50.0% | |
| CGCATCAATTTCTGTGGCAG+AGG | - | tig0028517:52098-52117 | None:intergenic | 50.0% | |
| CGACATGTTCAAGAGGCAGA+GGG | - | tig0028517:52133-52152 | None:intergenic | 50.0% | |
| TCGACATGTTCAAGAGGCAG+AGG | - | tig0028517:52134-52153 | None:intergenic | 50.0% | |
| TCTGCCTCTTGAACATGTCG+AGG | + | tig0028517:52133-52152 | Msa1438200:CDS | 50.0% | |
| TGTTGGAGGAGAACTTGGAC+TGG | + | tig0028517:52251-52270 | Msa1438200:CDS | 50.0% | |
| GTTGGAGGAGAACTTGGACT+GGG | + | tig0028517:52252-52271 | Msa1438200:CDS | 50.0% | |
| AAACACCCGCATGAAGACGC+AGG | + | tig0028517:46665-46684 | Msa1438200:CDS | 55.0% | |
| ATGCACCTGCGTCTTCATGC+GGG | - | tig0028517:46673-46692 | None:intergenic | 55.0% | |
| CTAGCGGCCTTCACTTGGAT+TGG | + | tig0028517:46982-47001 | Msa1438200:CDS | 55.0% | |
| AACCCTGGCCCATGTTACGT+GGG | + | tig0028517:47066-47085 | Msa1438200:CDS | 55.0% | |
| TTCCCACGTAACATGGGCCA+GGG | - | tig0028517:47071-47090 | None:intergenic | 55.0% | |
| ATTCCCACGTAACATGGGCC+AGG | - | tig0028517:47072-47091 | None:intergenic | 55.0% | |
| ! | GCAGAACCAAGGGAGTATGG+CGG | + | tig0028517:47131-47150 | Msa1438200:CDS | 55.0% |
| ! | CAGAACCAAGGGAGTATGGC+GGG | + | tig0028517:47132-47151 | Msa1438200:CDS | 55.0% |
| ! | AGAACCAAGGGAGTATGGCG+GGG | + | tig0028517:47133-47152 | Msa1438200:CDS | 55.0% |
| GGGAAGCTCGTGAAGCTGTT+GGG | + | tig0028517:47153-47172 | Msa1438200:CDS | 55.0% | |
| GGAAGCTCGTGAAGCTGTTG+GGG | + | tig0028517:47154-47173 | Msa1438200:CDS | 55.0% | |
| !! | AGGAAGTGAAGCATCGGGAC+TGG | + | tig0028517:47234-47253 | Msa1438200:CDS | 55.0% |
| !! | GGAAGTGAAGCATCGGGACT+GGG | + | tig0028517:47235-47254 | Msa1438200:CDS | 55.0% |
| !! | GAAGTGAAGCATCGGGACTG+GGG | + | tig0028517:47236-47255 | Msa1438200:CDS | 55.0% |
| !! | AAGTGAAGCATCGGGACTGG+GGG | + | tig0028517:47237-47256 | Msa1438200:CDS | 55.0% |
| ! | GATGGATGTGCTGATGGGCA+AGG | + | tig0028517:47713-47732 | Msa1438200:CDS | 55.0% |
| ! | TGGATGTGCTGATGGGCAAG+GGG | + | tig0028517:47715-47734 | Msa1438200:CDS | 55.0% |
| GGAGTCCTCAGGTGCCTAAT+CGG | + | tig0028517:47807-47826 | Msa1438200:intron | 55.0% | |
| GAGTCCTCAGGTGCCTAATC+GGG | + | tig0028517:47808-47827 | Msa1438200:intron | 55.0% | |
| CTGAAACGAGGCTCCCGATT+AGG | - | tig0028517:47824-47843 | None:intergenic | 55.0% | |
| CTAATCGGGAGCCTCGTTTC+AGG | + | tig0028517:47822-47841 | Msa1438200:intron | 55.0% | |
| ACCCTTCGTTGTCTTGGGTG+CGG | - | tig0028517:47850-47869 | None:intergenic | 55.0% | |
| CTCTAACAATGGCCCCACTC+TGG | + | tig0028517:48426-48445 | Msa1438200:CDS | 55.0% | |
| ATGGCCCGACTGCAGTTACT+TGG | - | tig0028517:49610-49629 | None:intergenic | 55.0% | |
| ACACATCAGTCCCCCAAAGC+TGG | - | tig0028517:49992-50011 | None:intergenic | 55.0% | |
| CAGGAGGTGGAGATGCTGTT+GGG | - | tig0028517:50148-50167 | None:intergenic | 55.0% | |
| TCTTGTATGGCTGCAGGAGG+TGG | - | tig0028517:50161-50180 | None:intergenic | 55.0% | |
| TGGAGCGGACAATGACTACC+AGG | + | tig0028517:50646-50665 | Msa1438200:CDS | 55.0% | |
| GGAGCGGACAATGACTACCA+GGG | + | tig0028517:50647-50666 | Msa1438200:CDS | 55.0% | |
| GCTGAAACAAACCGAGGCTG+CGG | - | tig0028517:50673-50692 | None:intergenic | 55.0% | |
| CTAGCCTAGCTAGAACGACC+CGG | + | tig0028517:51102-51121 | Msa1438200:intron | 55.0% | |
| TCGGCTATGCAACGTGGATC+AGG | + | tig0028517:51351-51370 | Msa1438200:intron | 55.0% | |
| CAAGGCTACACCAGCAACTC+AGG | + | tig0028517:51956-51975 | Msa1438200:CDS | 55.0% | |
| GGTTCATTCGCCTGAGTTGC+TGG | - | tig0028517:51969-51988 | None:intergenic | 55.0% | |
| GCAACTCAGGCGAATGAACC+AGG | + | tig0028517:51969-51988 | Msa1438200:CDS | 55.0% | |
| GAATGAACCAGGCGCAGAGA+AGG | + | tig0028517:51980-51999 | Msa1438200:CDS | 55.0% | |
| ! | TTTTGAGCCTTCTCTGCGCC+TGG | - | tig0028517:51990-52009 | None:intergenic | 55.0% |
| TGATCCTCCTGGCGCGAGTT+TGG | + | tig0028517:47043-47062 | Msa1438200:CDS | 60.0% | |
| GAACCCTGGCCCATGTTACG+TGG | + | tig0028517:47065-47084 | Msa1438200:CDS | 60.0% | |
| GGGGAAGCTCGTGAAGCTGT+TGG | + | tig0028517:47152-47171 | Msa1438200:CDS | 60.0% | |
| !! | AGTGAAGCATCGGGACTGGG+GGG | + | tig0028517:47238-47257 | Msa1438200:CDS | 60.0% |
| ! | GCGCAGTAGGGGCTTTGACA+AGG | + | tig0028517:47682-47701 | Msa1438200:CDS | 60.0% |
| AAGATCACGGGGGAGTCCTC+AGG | + | tig0028517:47796-47815 | Msa1438200:CDS | 60.0% | |
| TCCCGCACCCAAGACAACGA+AGG | + | tig0028517:47845-47864 | Msa1438200:intron | 60.0% | |
| CCCTTCGTTGTCTTGGGTGC+GGG | - | tig0028517:47849-47868 | None:intergenic | 60.0% | |
| CCCGCACCCAAGACAACGAA+GGG | + | tig0028517:47846-47865 | Msa1438200:intron | 60.0% | |
| GCAGGAGGTGGAGATGCTGT+TGG | - | tig0028517:50149-50168 | None:intergenic | 60.0% | |
| ACAGCCACGGGAGCAAGAGT+CGG | - | tig0028517:50627-50646 | None:intergenic | 60.0% | |
| ATTGTCCGCTCCACAGCCAC+GGG | - | tig0028517:50639-50658 | None:intergenic | 60.0% | |
| CATTGTCCGCTCCACAGCCA+CGG | - | tig0028517:50640-50659 | None:intergenic | 60.0% | |
| ! | AAGGCCGGGTCGTTCTAGCT+AGG | - | tig0028517:51109-51128 | None:intergenic | 60.0% |
| TGCGGCTAGCGGCCTTCACT+TGG | + | tig0028517:46977-46996 | Msa1438200:CDS | 65.0% | |
| GGTTCCAAACTCGCGCCAGG+AGG | - | tig0028517:47050-47069 | None:intergenic | 65.0% | |
| CAGGGTTCCAAACTCGCGCC+AGG | - | tig0028517:47053-47072 | None:intergenic | 65.0% | |
| ! | CTGGCGCGAGTTTGGAACCC+TGG | + | tig0028517:47051-47070 | Msa1438200:CDS | 65.0% |
| GCTTCCCCGCCATACTCCCT+TGG | - | tig0028517:47140-47159 | None:intergenic | 65.0% | |
| GGCTCCCGATTAGGCACCTG+AGG | - | tig0028517:47815-47834 | None:intergenic | 65.0% | |
| TGGGTGCGGGACCTGAAACG+AGG | - | tig0028517:47836-47855 | None:intergenic | 65.0% | |
| AGGTCAGAGGCGGCCAGCTT+TGG | + | tig0028517:49976-49995 | Msa1438200:intron | 65.0% | |
| GGTCAGAGGCGGCCAGCTTT+GGG | + | tig0028517:49977-49996 | Msa1438200:intron | 65.0% | |
| GTCAGAGGCGGCCAGCTTTG+GGG | + | tig0028517:49978-49997 | Msa1438200:CDS | 65.0% | |
| ! | TCAGAGGCGGCCAGCTTTGG+GGG | + | tig0028517:49979-49998 | Msa1438200:CDS | 65.0% |
| ! | TGAGCCGACTCTTGCTCCCG+TGG | + | tig0028517:50620-50639 | Msa1438200:CDS | 65.0% |
| GACTCTTGCTCCCGTGGCTG+TGG | + | tig0028517:50626-50645 | Msa1438200:CDS | 65.0% | |
| TTGCTCCCGTGGCTGTGGAG+CGG | + | tig0028517:50631-50650 | Msa1438200:CDS | 65.0% | |
| GCATCGGGACTGGGGGGAGA+AGG | + | tig0028517:47244-47263 | Msa1438200:CDS | 70.0% | |
| GACTACCAGGGCCGCAGCCT+CGG | + | tig0028517:50659-50678 | Msa1438200:CDS | 70.0% | |
| ACAAACCGAGGCTGCGGCCC+TGG | - | tig0028517:50667-50686 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028517 | gene | 46614 | 52561 | 46614 | ID=Msa1438200;Name=Msa1438200 |
| tig0028517 | mRNA | 46614 | 52561 | 46614 | ID=Msa1438200-mRNA-1;Parent=Msa1438200;Name=Msa1438200-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0.8|0.72|1|0.8|0.72|11|201|796 |
| tig0028517 | exon | 46614 | 46730 | 46614 | ID=Msa1438200-mRNA-1:exon:11104;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 46807 | 47817 | 46807 | ID=Msa1438200-mRNA-1:exon:11105;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 48121 | 48492 | 48121 | ID=Msa1438200-mRNA-1:exon:11106;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 49978 | 50038 | 49978 | ID=Msa1438200-mRNA-1:exon:11107;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 50120 | 50218 | 50120 | ID=Msa1438200-mRNA-1:exon:11108;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 50399 | 50493 | 50399 | ID=Msa1438200-mRNA-1:exon:11109;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 50567 | 50680 | 50567 | ID=Msa1438200-mRNA-1:exon:11110;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 51168 | 51235 | 51168 | ID=Msa1438200-mRNA-1:exon:11111;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 51497 | 51607 | 51497 | ID=Msa1438200-mRNA-1:exon:11112;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 51923 | 52154 | 51923 | ID=Msa1438200-mRNA-1:exon:11113;Parent=Msa1438200-mRNA-1 |
| tig0028517 | exon | 52250 | 52561 | 52250 | ID=Msa1438200-mRNA-1:exon:11114;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 46614 | 46730 | 46614 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 46807 | 47817 | 46807 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 48121 | 48492 | 48121 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 49978 | 50038 | 49978 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 50120 | 50218 | 50120 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 50399 | 50493 | 50399 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 50567 | 50680 | 50567 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 51168 | 51235 | 51168 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 51497 | 51607 | 51497 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 51923 | 52154 | 51923 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | CDS | 52250 | 52360 | 52250 | ID=Msa1438200-mRNA-1:cds;Parent=Msa1438200-mRNA-1 |
| tig0028517 | three_prime_UTR | 52361 | 52561 | 52361 | ID=Msa1438200-mRNA-1:three_prime_utr;Parent=Msa1438200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
