Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030830 | KYP43055.1 | 73.422 | 903 | 158 | 10 | 1 | 892 | 1 | 832 | 0.0 | 1265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030830 | Msa0078340 | 0.996752 | 9.939932e-232 | -8.615850e-47 |
| Msa0030830 | Msa0267870 | 0.876777 | 1.065836e-68 | -8.615850e-47 |
| Msa0030830 | Msa0651150 | 0.803308 | 3.708835e-49 | -8.615850e-47 |
| Msa0030830 | Msa1300860 | 0.829893 | 3.989966e-55 | -8.615850e-47 |
| Msa0030830 | Msa1331920 | 0.812553 | 4.002112e-51 | -8.615850e-47 |
| Msa0030830 | Msa1438200 | 0.976668 | 2.870823e-142 | -8.615850e-47 |
| Msa0030830 | Msa1452480 | 0.812249 | 4.662222e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030830 | MtrunA17_Chr1g0188471 | 95.349 | 473 | 22 | 0 | 1 | 473 | 1 | 473 | 0.0 | 900 |
| Msa0030830 | MtrunA17_Chr1g0188471 | 98.889 | 360 | 4 | 0 | 533 | 892 | 462 | 821 | 0.0 | 758 |
| Msa0030830 | MtrunA17_Chr6g0477131 | 78.889 | 360 | 76 | 0 | 533 | 892 | 380 | 739 | 0.0 | 617 |
| Msa0030830 | MtrunA17_Chr6g0477131 | 50.459 | 436 | 148 | 12 | 38 | 462 | 2 | 380 | 9.10e-102 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0030830 | AT5G08450.3 | 76.087 | 368 | 75 | 3 | 533 | 892 | 556 | 918 | 0.0 | 594 |
| Msa0030830 | AT5G08450.3 | 42.161 | 472 | 182 | 13 | 55 | 462 | 112 | 556 | 8.52e-79 | 275 |
| Msa0030830 | AT5G08450.1 | 76.087 | 368 | 75 | 3 | 533 | 892 | 556 | 918 | 0.0 | 594 |
| Msa0030830 | AT5G08450.1 | 42.161 | 472 | 182 | 13 | 55 | 462 | 112 | 556 | 8.52e-79 | 275 |
| Msa0030830 | AT5G08450.2 | 76.087 | 368 | 75 | 3 | 533 | 892 | 556 | 918 | 0.0 | 594 |
| Msa0030830 | AT5G08450.2 | 42.161 | 472 | 182 | 13 | 55 | 462 | 112 | 556 | 8.52e-79 | 275 |
Find 244 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTAATTAATGTACTTATT+TGG | 0.131352 | 1_1:+57314793 | Msa0030830:three_prime_UTR |
| GTCTTTCGCTTCTACTATTA+AGG | 0.145555 | 1_1:+57314734 | Msa0030830:three_prime_UTR |
| CACATCTGCTCGATTGAAAA+AGG | 0.213489 | 1_1:+57313892 | Msa0030830:CDS |
| GGTCAGAGGCGGCCAGCTTT+GGG | 0.215858 | 1_1:+57312316 | Msa0030830:intron |
| TATATAAGTTCTGGTATTTC+AGG | 0.243212 | 1_1:+57310624 | Msa0030830:CDS |
| AGGTCAGAGGCGGCCAGCTT+TGG | 0.245444 | 1_1:+57312315 | Msa0030830:intron |
| CGTGCTTGGGGTGCTAAAAT+TGG | 0.248389 | 1_1:+57312773 | Msa0030830:CDS |
| CAAACTGGTGTTTGGATTGC+AGG | 0.277043 | 1_1:+57314633 | Msa0030830:CDS |
| GTGCCGGCAGAAATTATTAT+TGG | 0.291264 | 1_1:+57310507 | Msa0030830:CDS |
| GGTTCATTCGCCTGAGTTGC+TGG | 0.305306 | 1_1:-57314307 | None:intergenic |
| GGGAAGCTCGTGAAGCTGTT+GGG | 0.312197 | 1_1:+57309488 | Msa0030830:CDS |
| ACTGAAGACGGCGCCAATTT+CGG | 0.315173 | 1_1:-57308899 | None:intergenic |
| CGCAGGTGCATATCCGAAAT+TGG | 0.316104 | 1_1:+57308886 | Msa0030830:CDS |
| TGATCCTCCTGGCGCGAGTT+TGG | 0.318436 | 1_1:+57309378 | Msa0030830:CDS |
| CTAATCGGGAGCCTCGTTTC+AGG | 0.319281 | 1_1:+57310157 | Msa0030830:CDS |
| GACTCTTCATGAGATTTCTT+AGG | 0.324563 | 1_1:-57308830 | None:intergenic |
| AAATACCAGAACTTATATAT+TGG | 0.329432 | 1_1:-57310620 | None:intergenic |
| GGAGTCCTCAGGTGCCTAAT+CGG | 0.339096 | 1_1:+57310142 | Msa0030830:CDS |
| AAGAATTACGCGCAACCATT+CGG | 0.339382 | 1_1:+57312516 | Msa0030830:CDS |
| GGTAAGACAGTTTCTTGTTC+AGG | 0.349229 | 1_1:-57309904 | None:intergenic |
| TCTTATGTTGTTTATAAAGT+TGG | 0.350015 | 1_1:+57310660 | Msa0030830:CDS |
| GCTATTTGAAACATCTTTCT+CGG | 0.351179 | 1_1:-57309848 | None:intergenic |
| GGAAGTGAAGCATCGGGACT+GGG | 0.361092 | 1_1:+57309570 | Msa0030830:CDS |
| CAGAAATTGATGCGCACAAT+TGG | 0.362794 | 1_1:+57314445 | Msa0030830:CDS |
| TGTATGGACATACAATCTTT+TGG | 0.367782 | 1_1:-57312548 | None:intergenic |
| ACTGAGAAGAAGGAGATGTT+TGG | 0.371321 | 1_1:+57309142 | Msa0030830:CDS |
| TATCATATGTCTTATGATAT+AGG | 0.371947 | 1_1:+57308932 | Msa0030830:CDS |
| AATGGTCTCAAACTGGTGTT+TGG | 0.374846 | 1_1:+57314625 | Msa0030830:CDS |
| AGAATTACGCGCAACCATTC+GGG | 0.375276 | 1_1:+57312517 | Msa0030830:CDS |
| CAATGTACGTTCCCGTGCTT+GGG | 0.376198 | 1_1:+57312760 | Msa0030830:CDS |
| GAAAGGGAAGCTGATTTAGT+AGG | 0.382092 | 1_1:+57309979 | Msa0030830:CDS |
| TTTAGATCTATCGTCACCTT+TGG | 0.390168 | 1_1:-57309527 | None:intergenic |
| GCCCATTGATAATCAATTGC+TGG | 0.392653 | 1_1:+57310529 | Msa0030830:CDS |
| CCCTTCGTTGTCTTGGGTGC+GGG | 0.393639 | 1_1:-57310181 | None:intergenic |
| GAAAGTACCCTTCGTTGTCT+TGG | 0.394292 | 1_1:-57310188 | None:intergenic |
| TCAGCAGAACCAAGGGAGTA+TGG | 0.398466 | 1_1:+57309463 | Msa0030830:CDS |
| TCTTTCGCTTCTACTATTAA+GGG | 0.401795 | 1_1:+57314735 | Msa0030830:three_prime_UTR |
| TGCGGCTAGCGGCCTTCACT+TGG | 0.401963 | 1_1:+57309312 | Msa0030830:CDS |
| AGGAAGTGAAGCATCGGGAC+TGG | 0.402780 | 1_1:+57309569 | Msa0030830:CDS |
| GACTCTTGCTCCCGTGGCTG+TGG | 0.403687 | 1_1:+57312965 | Msa0030830:CDS |
| GAGTCCTCAGGTGCCTAATC+GGG | 0.404322 | 1_1:+57310143 | Msa0030830:CDS |
| ATGATATAGGTCAGGATTCT+CGG | 0.404344 | 1_1:+57308945 | Msa0030830:CDS |
| ACAATGTACGTTCCCGTGCT+TGG | 0.404868 | 1_1:+57312759 | Msa0030830:CDS |
| TGAACAAGAAACTGTCTTAC+CGG | 0.408860 | 1_1:+57309906 | Msa0030830:CDS |
| CTTGATTCTAACCTCTTCTC+AGG | 0.412606 | 1_1:-57309070 | None:intergenic |
| TATGACTCCGATCTTGTTGC+TGG | 0.415495 | 1_1:+57312356 | Msa0030830:CDS |
| ATGGCCCCACTCTGGAAATT+CGG | 0.415777 | 1_1:+57310769 | Msa0030830:CDS |
| CTGAAACGAGGCTCCCGATT+AGG | 0.420816 | 1_1:-57310156 | None:intergenic |
| CTAGCGGCCTTCACTTGGAT+TGG | 0.421167 | 1_1:+57309317 | Msa0030830:CDS |
| AACCTCTTCTCAGGACCAAC+AGG | 0.425551 | 1_1:-57309061 | None:intergenic |
| ACAAACCGAGGCTGCGGCCC+TGG | 0.427516 | 1_1:-57313003 | None:intergenic |
| AAAGTACCCTTCGTTGTCTT+GGG | 0.428159 | 1_1:-57310187 | None:intergenic |
| GTGATCTTTGTATCCTCTTA+CGG | 0.431829 | 1_1:-57310116 | None:intergenic |
| GATGTTTGGAGAAGTAAGAA+AGG | 0.434703 | 1_1:+57309156 | Msa0030830:CDS |
| TGCCAGCAATTGATTATCAA+TGG | 0.435849 | 1_1:-57310531 | None:intergenic |
| CCGGATATCTCTACTATCCT+TGG | 0.436996 | 1_1:-57309098 | None:intergenic |
| AGGAAAAGGATCAGATGAAG+AGG | 0.440033 | 1_1:+57309809 | Msa0030830:CDS |
| AGCGAGAAGGAACCTGTTGA+TGG | 0.445827 | 1_1:+57309868 | Msa0030830:CDS |
| TTAGGTGTTGGAGGAGAACT+TGG | 0.446465 | 1_1:+57314587 | Msa0030830:intron |
| GATATACAATGGTCTCAAAC+TGG | 0.449001 | 1_1:+57314618 | Msa0030830:CDS |
| ACCTTAGCCGATCCATCAAC+AGG | 0.450588 | 1_1:-57309880 | None:intergenic |
| GTCAGAGGCGGCCAGCTTTG+GGG | 0.459665 | 1_1:+57312317 | Msa0030830:CDS |
| GATGCACATGTTGAAGTTAG+AGG | 0.460869 | 1_1:+57309205 | Msa0030830:CDS |
| GCATCAATCATAACATGATC+AGG | 0.460916 | 1_1:-57314388 | None:intergenic |
| GACTACCAGGGCCGCAGCCT+CGG | 0.462584 | 1_1:+57312998 | Msa0030830:CDS |
| ACCCTTCGTTGTCTTGGGTG+CGG | 0.464608 | 1_1:-57310182 | None:intergenic |
| CGCATCAATTTCTGTGGCAG+AGG | 0.465734 | 1_1:-57314436 | None:intergenic |
| CACCATCCACATTCTGCAAA+TGG | 0.465832 | 1_1:+57314352 | Msa0030830:CDS |
| GCAGGAGGTGGAGATGCTGT+TGG | 0.466066 | 1_1:-57312485 | None:intergenic |
| TTGTGTATTCCCACGTAACA+TGG | 0.468448 | 1_1:-57309410 | None:intergenic |
| TGGTGTTTGGATTGCAGGAA+AGG | 0.471986 | 1_1:+57314638 | Msa0030830:CDS |
| TCTTGTATGGCTGCAGGAGG+TGG | 0.472238 | 1_1:-57312497 | None:intergenic |
| GGGGAAGCTCGTGAAGCTGT+TGG | 0.476726 | 1_1:+57309487 | Msa0030830:CDS |
| TCGTATCACGATTCTCAAAC+CGG | 0.482743 | 1_1:-57309117 | None:intergenic |
| TAAAGACAAGAGAAAAGAAA+GGG | 0.483019 | 1_1:+57309963 | Msa0030830:CDS |
| TCAGAGGCGGCCAGCTTTGG+GGG | 0.483142 | 1_1:+57312318 | Msa0030830:CDS |
| CAGAACCAAGGGAGTATGGC+GGG | 0.483321 | 1_1:+57309467 | Msa0030830:CDS |
| GTTTATCTTCAGAAAGGAGG+TGG | 0.484444 | 1_1:+57312894 | Msa0030830:intron |
| CTAAAGACAAGAGAAAAGAA+AGG | 0.484997 | 1_1:+57309962 | Msa0030830:CDS |
| GCACTATGATTAGGTGTTGG+AGG | 0.485559 | 1_1:+57314578 | Msa0030830:intron |
| CTCTAACAATGGCCCCACTC+TGG | 0.489167 | 1_1:+57310761 | Msa0030830:CDS |
| AAAAGAAAATTTAAAAGAGA+AGG | 0.489507 | 1_1:+57309789 | Msa0030830:CDS |
| CTGAGAAGAGGTTAGAATCA+AGG | 0.489609 | 1_1:+57309071 | Msa0030830:CDS |
| AGTGAAGTCTATAACTATAG+TGG | 0.492425 | 1_1:+57310087 | Msa0030830:CDS |
| CGTAATTCTTGTATGGCTGC+AGG | 0.493153 | 1_1:-57312503 | None:intergenic |
| CAGGAGGTGGAGATGCTGTT+GGG | 0.493377 | 1_1:-57312484 | None:intergenic |
| AGATAAAGATGTTGAAAGGT+GGG | 0.496253 | 1_1:+57309738 | Msa0030830:CDS |
| CAAGGATGGTAGACATGATC+GGG | 0.500951 | 1_1:+57309237 | Msa0030830:CDS |
| AAGATGTTGAAAGGTGGGAG+AGG | 0.501264 | 1_1:+57309743 | Msa0030830:CDS |
| CAGGGTTCCAAACTCGCGCC+AGG | 0.501992 | 1_1:-57309385 | None:intergenic |
| TCATGAAGGAACACTGGTGC+CGG | 0.503226 | 1_1:+57310491 | Msa0030830:CDS |
| TCAGAGTGCTAAAAGTGAAA+AGG | 0.503292 | 1_1:+57309183 | Msa0030830:CDS |
| CTCCTCTTCATTCAGTGTAT+CGG | 0.505553 | 1_1:+57309002 | Msa0030830:CDS |
| AATATACAAGTTAGCAATAC+GGG | 0.505779 | 1_1:+57309628 | Msa0030830:CDS |
| AGATGTTGAAAGGTGGGAGA+GGG | 0.505990 | 1_1:+57309744 | Msa0030830:CDS |
| ACATCTTTATCTTGCTTCAG+AGG | 0.506057 | 1_1:-57309727 | None:intergenic |
| ACCTGTTGATGGATCGGCTA+AGG | 0.506107 | 1_1:+57309879 | Msa0030830:CDS |
| ACAATCTTTGCAATGAGCCT+TGG | 0.506694 | 1_1:+57313554 | Msa0030830:CDS |
| TGCACAGTTCTCATGCATAC+AGG | 0.508695 | 1_1:+57312452 | Msa0030830:intron |
| GCAACTCAGGCGAATGAACC+AGG | 0.509092 | 1_1:+57314310 | Msa0030830:CDS |
| TTAGCAATACGGGTAGTGAC+TGG | 0.510037 | 1_1:+57309638 | Msa0030830:CDS |
| GGCACTGTTTAGCTGTGGAA+TGG | 0.510691 | 1_1:+57310550 | Msa0030830:CDS |
| GCTTCCCCGCCATACTCCCT+TGG | 0.510806 | 1_1:-57309472 | None:intergenic |
| ATTCCCACGTAACATGGGCC+AGG | 0.511952 | 1_1:-57309404 | None:intergenic |
| GGTTGCGCGTAATTCTTGTA+TGG | 0.512360 | 1_1:-57312510 | None:intergenic |
| GCTGAAACAAACCGAGGCTG+CGG | 0.512908 | 1_1:-57313009 | None:intergenic |
| GATAGTCATAATGATTCAAA+AGG | 0.512917 | 1_1:+57309259 | Msa0030830:CDS |
| ATGTTATGATTGATGCGTTC+CGG | 0.513877 | 1_1:+57314395 | Msa0030830:CDS |
| GCCAGCAATTGATTATCAAT+GGG | 0.515076 | 1_1:-57310530 | None:intergenic |
| CTGGCGCGAGTTTGGAACCC+TGG | 0.518206 | 1_1:+57309386 | Msa0030830:CDS |
| TGATATAGGTCAGGATTCTC+GGG | 0.520646 | 1_1:+57308946 | Msa0030830:CDS |
| ATTGTCCGCTCCACAGCCAC+GGG | 0.521413 | 1_1:-57312975 | None:intergenic |
| TACTATTAAGGGAGTGATGG+TGG | 0.522100 | 1_1:+57314746 | Msa0030830:three_prime_UTR |
| ATAGTGGTCAGCACCGTAAG+AGG | 0.524152 | 1_1:+57310103 | Msa0030830:CDS |
| TCAGACGATGGATGTGCTGA+TGG | 0.524170 | 1_1:+57310042 | Msa0030830:CDS |
| AAGATAAAGATGTTGAAAGG+TGG | 0.524455 | 1_1:+57309737 | Msa0030830:CDS |
| AAATTTAAAAGAGAAGGAAA+AGG | 0.524644 | 1_1:+57309795 | Msa0030830:CDS |
| AAGCTGATTTAGTAGGAGAC+AGG | 0.524761 | 1_1:+57309986 | Msa0030830:CDS |
| ACAAGAAATGCACCCTTGCA+AGG | 0.525240 | 1_1:-57314668 | None:intergenic |
| CAATATACAAGTTAGCAATA+CGG | 0.525660 | 1_1:+57309627 | Msa0030830:CDS |
| GAATGAACCAGGCGCAGAGA+AGG | 0.529663 | 1_1:+57314321 | Msa0030830:CDS |
| CCAAGGATAGTAGAGATATC+CGG | 0.529723 | 1_1:+57309098 | Msa0030830:CDS |
| ACACAAGGTTCAGTTGAGGT+TGG | 0.529870 | 1_1:+57309427 | Msa0030830:CDS |
| AGGTGATACTAAGACAGAAA+AGG | 0.531406 | 1_1:+57309279 | Msa0030830:CDS |
| ACAGGTCTGATAAGCGCAGT+AGG | 0.531771 | 1_1:+57310004 | Msa0030830:CDS |
| TTGTTTCAGTGGCTTCATGA+AGG | 0.533883 | 1_1:+57310477 | Msa0030830:CDS |
| ATGGATGTGCTGATGGGCAA+GGG | 0.536045 | 1_1:+57310049 | Msa0030830:CDS |
| TATGTCTTATGATATAGGTC+AGG | 0.537828 | 1_1:+57308937 | Msa0030830:CDS |
| AAAGAAAGGAAGTGAAGCAT+CGG | 0.538057 | 1_1:+57309563 | Msa0030830:CDS |
| TGGAGCGGACAATGACTACC+AGG | 0.540569 | 1_1:+57312985 | Msa0030830:CDS |
| AAAATATATTCTGATCCTCC+TGG | 0.540746 | 1_1:+57309367 | Msa0030830:CDS |
| CACCATTTGCAGAATGTGGA+TGG | 0.541504 | 1_1:-57314354 | None:intergenic |
| CTCAGGACCAACAGGATGCT+CGG | 0.542188 | 1_1:-57309053 | None:intergenic |
| CATATATGTTGCAGGTCTCA+AGG | 0.542324 | 1_1:+57310442 | Msa0030830:intron |
| TGAGAAGAGGTTAGAATCAA+GGG | 0.546444 | 1_1:+57309072 | Msa0030830:CDS |
| GATGGATGTGCTGATGGGCA+AGG | 0.547049 | 1_1:+57310048 | Msa0030830:CDS |
| AAGAAAGGAAGTGAAGCATC+GGG | 0.547344 | 1_1:+57309564 | Msa0030830:CDS |
| TTCTACTATTAAGGGAGTGA+TGG | 0.549056 | 1_1:+57314743 | Msa0030830:three_prime_UTR |
| GGAAAAGGATCAGATGAAGA+GGG | 0.549365 | 1_1:+57309810 | Msa0030830:CDS |
| ATGAAGAGGGAGTCGTGGAA+TGG | 0.551838 | 1_1:+57309823 | Msa0030830:CDS |
| CAGGTCTGATAAGCGCAGTA+GGG | 0.551861 | 1_1:+57310005 | Msa0030830:CDS |
| GAAGTGAAGCATCGGGACTG+GGG | 0.552074 | 1_1:+57309571 | Msa0030830:CDS |
| GGAAGCTCGTGAAGCTGTTG+GGG | 0.552492 | 1_1:+57309489 | Msa0030830:CDS |
| TGCTGGAGAGAAGTTGGTCA+AGG | 0.552942 | 1_1:+57314279 | Msa0030830:CDS |
| GAGTTCATCAGCAGAACCAA+GGG | 0.553737 | 1_1:+57309456 | Msa0030830:CDS |
| CAAGGCTACACCAGCAACTC+AGG | 0.553901 | 1_1:+57314297 | Msa0030830:CDS |
| AATGGTGAAAGCTCTAACAA+TGG | 0.554756 | 1_1:+57310750 | Msa0030830:CDS |
| ATGCACCTGCGTCTTCATGC+GGG | 0.555218 | 1_1:-57308874 | None:intergenic |
| AAGTGAAGCATCGGGACTGG+GGG | 0.556691 | 1_1:+57309572 | Msa0030830:CDS |
| GTTAGAATCAAGGGAATCCA+AGG | 0.556992 | 1_1:+57309081 | Msa0030830:CDS |
| TAAGAGGATACAAAGATCAC+GGG | 0.558324 | 1_1:+57310119 | Msa0030830:CDS |
| TGGGCAAGGGGCAATAGAAA+AGG | 0.561976 | 1_1:+57310062 | Msa0030830:CDS |
| GGTAAAAGCGCCTCGTGATG+TGG | 0.563039 | 1_1:+57308970 | Msa0030830:CDS |
| TATGCACCTGCGTCTTCATG+CGG | 0.564892 | 1_1:-57308875 | None:intergenic |
| TTGCTCCCGTGGCTGTGGAG+CGG | 0.565542 | 1_1:+57312970 | Msa0030830:CDS |
| AATCGAGCAGATGTGTATTG+TGG | 0.566279 | 1_1:-57313884 | None:intergenic |
| TGATACGAAGACTGAGAAGA+AGG | 0.566732 | 1_1:+57309132 | Msa0030830:CDS |
| TGTTGGAGGAGAACTTGGAC+TGG | 0.568034 | 1_1:+57314592 | Msa0030830:CDS |
| TTTGTTTATCTTCAGAAAGG+AGG | 0.569004 | 1_1:+57312891 | Msa0030830:intron |
| GAAGGAACCTGTTGATGGAT+CGG | 0.569303 | 1_1:+57309873 | Msa0030830:CDS |
| AGGTTCAGTTGAGGTTGGAA+AGG | 0.569711 | 1_1:+57309432 | Msa0030830:CDS |
| CATTGTCCGCTCCACAGCCA+CGG | 0.570099 | 1_1:-57312976 | None:intergenic |
| TAGCAAACAATGAAACATGA+AGG | 0.570136 | 1_1:-57310219 | None:intergenic |
| GAACCCTGGCCCATGTTACG+TGG | 0.571537 | 1_1:+57309400 | Msa0030830:CDS |
| ACAAGGATGGTAGACATGAT+CGG | 0.572899 | 1_1:+57309236 | Msa0030830:CDS |
| CATTATTGTATTCAGGTCAG+AGG | 0.574281 | 1_1:+57312302 | Msa0030830:intron |
| TATAAGCATTGTAGCAGACA+AGG | 0.576918 | 1_1:+57313850 | Msa0030830:CDS |
| TGAGCCGACTCTTGCTCCCG+TGG | 0.579023 | 1_1:+57312959 | Msa0030830:CDS |
| ATCAGATGAAGAGGGAGTCG+TGG | 0.581068 | 1_1:+57309818 | Msa0030830:CDS |
| GAAAGGAATATACCCTTGCA+AGG | 0.585289 | 1_1:+57314655 | Msa0030830:CDS |
| AGCAAGATAAAGATGTTGAA+AGG | 0.586136 | 1_1:+57309734 | Msa0030830:CDS |
| ATTCTTTCCAATCCAAGTGA+AGG | 0.587175 | 1_1:-57309324 | None:intergenic |
| TCGACATGTTCAAGAGGCAG+AGG | 0.587259 | 1_1:-57314472 | None:intergenic |
| AGAGTTCATCAGCAGAACCA+AGG | 0.587737 | 1_1:+57309455 | Msa0030830:CDS |
| ATCCTGTTGGTCCTGAGAAG+AGG | 0.593231 | 1_1:+57309059 | Msa0030830:CDS |
| TGGATGTGCTGATGGGCAAG+GGG | 0.595577 | 1_1:+57310050 | Msa0030830:CDS |
| TTCCCACGTAACATGGGCCA+GGG | 0.596850 | 1_1:-57309403 | None:intergenic |
| CCTCATGCCGAGCATCCTGT+TGG | 0.598265 | 1_1:+57309046 | Msa0030830:CDS |
| AGACATACCAGCAACAAGAT+CGG | 0.598403 | 1_1:-57312363 | None:intergenic |
| TGCAAGAGCTGATAAAGTTG+TGG | 0.600141 | 1_1:+57310691 | Msa0030830:CDS |
| TGGTATTTCAGGTAAAGTAG+AGG | 0.601143 | 1_1:+57310635 | Msa0030830:CDS |
| GGGCCAATAATAATTTCTGC+CGG | 0.601601 | 1_1:-57310510 | None:intergenic |
| GTAAGCAATACGATTGGTGA+TGG | 0.603069 | 1_1:+57309697 | Msa0030830:CDS |
| GCGCAGTAGGGGCTTTGACA+AGG | 0.603439 | 1_1:+57310017 | Msa0030830:CDS |
| GCTTCTTACAACGAGACCAC+CGG | 0.606502 | 1_1:-57314414 | None:intergenic |
| TTGCTGGCACTGTTTAGCTG+TGG | 0.607632 | 1_1:+57310545 | Msa0030830:CDS |
| CCCGCACCCAAGACAACGAA+GGG | 0.610400 | 1_1:+57310181 | Msa0030830:CDS |
| ACAATGAAACATGAAGGAAG+AGG | 0.610455 | 1_1:-57310213 | None:intergenic |
| CCAACAGGATGCTCGGCATG+AGG | 0.610635 | 1_1:-57309046 | None:intergenic |
| GTACAAGTAAGCAATACGAT+TGG | 0.611525 | 1_1:+57309691 | Msa0030830:CDS |
| AGAGGAGATGACAACAAGGA+TGG | 0.612778 | 1_1:+57309223 | Msa0030830:CDS |
| CAAGAAATGCACCCTTGCAA+GGG | 0.613007 | 1_1:-57314667 | None:intergenic |
| GATATCCGAATTTCCAGAGT+GGG | 0.613558 | 1_1:-57310774 | None:intergenic |
| GTTGGAGGAGAACTTGGACT+GGG | 0.614908 | 1_1:+57314593 | Msa0030830:CDS |
| GGCTCCCGATTAGGCACCTG+AGG | 0.618494 | 1_1:-57310147 | None:intergenic |
| ACAGCCACGGGAGCAAGAGT+CGG | 0.619177 | 1_1:-57312963 | None:intergenic |
| TATTGTATTCAGGTCAGAGG+CGG | 0.619235 | 1_1:+57312305 | Msa0030830:intron |
| GTAAGAGGATACAAAGATCA+CGG | 0.619894 | 1_1:+57310118 | Msa0030830:CDS |
| AGATGTTTCAAATAGCGAGA+AGG | 0.621242 | 1_1:+57309855 | Msa0030830:CDS |
| GTGGCTTCATGAAGGAACAC+TGG | 0.621597 | 1_1:+57310485 | Msa0030830:CDS |
| ACTATTAAGGGAGTGATGGT+GGG | 0.623081 | 1_1:+57314747 | Msa0030830:three_prime_UTR |
| TGTGTATTCCCACGTAACAT+GGG | 0.623181 | 1_1:-57309409 | None:intergenic |
| ATCCGATACACTGAATGAAG+AGG | 0.624856 | 1_1:-57309004 | None:intergenic |
| GCTGCAGTTATCGAATTGAA+CGG | 0.629213 | 1_1:+57312795 | Msa0030830:CDS |
| AGGTCTGATAAGCGCAGTAG+GGG | 0.630782 | 1_1:+57310006 | Msa0030830:CDS |
| TGGGTGCGGGACCTGAAACG+AGG | 0.631463 | 1_1:-57310168 | None:intergenic |
| ATTGTGCGCATCAATTTCTG+TGG | 0.633533 | 1_1:-57314442 | None:intergenic |
| TGAACGGTGTTGCATTGTGA+AGG | 0.636161 | 1_1:+57312811 | Msa0030830:CDS |
| TCTGCCTCTTGAACATGTCG+AGG | 0.636664 | 1_1:+57314474 | Msa0030830:CDS |
| AATGTACGTTCCCGTGCTTG+GGG | 0.639375 | 1_1:+57312761 | Msa0030830:CDS |
| ATTTGGAGACACATACGACC+AGG | 0.639905 | 1_1:+57313927 | Msa0030830:CDS |
| ATAAGCATTGTAGCAGACAA+GGG | 0.640627 | 1_1:+57313851 | Msa0030830:CDS |
| AATACCTCGACATGTTCAAG+AGG | 0.641245 | 1_1:-57314478 | None:intergenic |
| CGACATGTTCAAGAGGCAGA+GGG | 0.643401 | 1_1:-57314471 | None:intergenic |
| AGAACCAAGGGAGTATGGCG+GGG | 0.645192 | 1_1:+57309468 | Msa0030830:CDS |
| AGAGCTGATAAAGTTGTGGA+CGG | 0.646325 | 1_1:+57310695 | Msa0030830:CDS |
| CAGACGATGGATGTGCTGAT+GGG | 0.649559 | 1_1:+57310043 | Msa0030830:CDS |
| AGTGAAGCATCGGGACTGGG+GGG | 0.652868 | 1_1:+57309573 | Msa0030830:CDS |
| GAGAACAAAATTGATTCCAA+AGG | 0.653361 | 1_1:+57309511 | Msa0030830:CDS |
| AATTCTTGTATGGCTGCAGG+AGG | 0.654697 | 1_1:-57312500 | None:intergenic |
| CGATATCCGAATTTCCAGAG+TGG | 0.657411 | 1_1:-57310775 | None:intergenic |
| GGTTCCAAACTCGCGCCAGG+AGG | 0.657439 | 1_1:-57309382 | None:intergenic |
| TGAGGATCACTAGAAGATGA+CGG | 0.658731 | 1_1:-57309028 | None:intergenic |
| TCCCGCACCCAAGACAACGA+AGG | 0.660777 | 1_1:+57310180 | Msa0030830:CDS |
| TACTCATTTGAAACTGAAGA+CGG | 0.661966 | 1_1:-57308911 | None:intergenic |
| AACCCTGGCCCATGTTACGT+GGG | 0.662153 | 1_1:+57309401 | Msa0030830:CDS |
| GATCTTCTCTCCACATCACG+AGG | 0.664401 | 1_1:-57308980 | None:intergenic |
| AAAGGAATATACCCTTGCAA+GGG | 0.667302 | 1_1:+57314656 | Msa0030830:CDS |
| ATGTTACGTGGGAATACACA+AGG | 0.667886 | 1_1:+57309412 | Msa0030830:CDS |
| GCAGAACCAAGGGAGTATGG+CGG | 0.670054 | 1_1:+57309466 | Msa0030830:CDS |
| AAACACCCGCATGAAGACGC+AGG | 0.670959 | 1_1:+57308869 | Msa0030830:CDS |
| TTATGATTGATGCGTTCCGG+TGG | 0.672968 | 1_1:+57314398 | Msa0030830:CDS |
| ATTTGTAGCAGTAACATACT+CGG | 0.674038 | 1_1:-57310799 | None:intergenic |
| AGTTAGAGGAGATGACAACA+AGG | 0.674306 | 1_1:+57309219 | Msa0030830:CDS |
| AAGAGGATACAAAGATCACG+GGG | 0.691210 | 1_1:+57310120 | Msa0030830:CDS |
| GGAGCGGACAATGACTACCA+GGG | 0.693176 | 1_1:+57312986 | Msa0030830:CDS |
| TGGACTGGGAAGATATACAA+TGG | 0.693989 | 1_1:+57314607 | Msa0030830:CDS |
| GAATACACAAGGTTCAGTTG+AGG | 0.702018 | 1_1:+57309423 | Msa0030830:CDS |
| TATAGGTCAGGATTCTCGGG+TGG | 0.702496 | 1_1:+57308949 | Msa0030830:CDS |
| GTTGATGTATGTGTGAGGCA+AGG | 0.705622 | 1_1:-57312933 | None:intergenic |
| ATATCCGAATTTCCAGAGTG+GGG | 0.715872 | 1_1:-57310773 | None:intergenic |
| TTTGACAAGGAATCAGACGA+TGG | 0.737459 | 1_1:+57310030 | Msa0030830:CDS |
| CAATAGTTGATGTATGTGTG+AGG | 0.739184 | 1_1:-57312938 | None:intergenic |
| AGAGGATACAAAGATCACGG+GGG | 0.825867 | 1_1:+57310121 | Msa0030830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTCTTTTTCTTT+GGG | - | chr1_1:57309784-57309803 | None:intergenic | 10.0% |
| !!! | TTTTAAATTTTCTTTTTCTT+TGG | - | chr1_1:57309785-57309804 | None:intergenic | 10.0% |
| !! | AATGAAAAAAAAAAAATAGA+AGG | - | chr1_1:57310993-57311012 | None:intergenic | 10.0% |
| !!! | AGTATTACAATTAAATTTTA+AGG | - | chr1_1:57312230-57312249 | None:intergenic | 10.0% |
| !! | TTTCCATTTAAATATTTATT+TGG | + | chr1_1:57312680-57312699 | Msa0030830:intron | 10.0% |
| !! | TATAAAATAATATCAAGATA+AGG | - | chr1_1:57313778-57313797 | None:intergenic | 10.0% |
| !!! | AATTTTTTTGTTTTGTTTTT+TGG | + | chr1_1:57314700-57314719 | Msa0030830:exon | 10.0% |
| !! | AATTAATTAATGTACTTATT+TGG | + | chr1_1:57314793-57314812 | Msa0030830:three_prime_UTR | 10.0% |
| !! | AAAAGAAAATTTAAAAGAGA+AGG | + | chr1_1:57309789-57309808 | Msa0030830:CDS | 15.0% |
| !! | TTGAATGACAATATATTTAT+TGG | - | chr1_1:57310255-57310274 | None:intergenic | 15.0% |
| !! | AAAAAAAACACCATAAAAAT+AGG | - | chr1_1:57310376-57310395 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAATAGAAGGAA+CGG | - | chr1_1:57310988-57311007 | None:intergenic | 15.0% |
| !!! | TTTTTAAACCAAAAAACTAT+AGG | + | chr1_1:57311702-57311721 | Msa0030830:intron | 15.0% |
| !!! | TTTTCATAATAGCATAAAAT+TGG | - | chr1_1:57312060-57312079 | None:intergenic | 15.0% |
| !!! | ATTTTAAGGATATAGAAAAA+AGG | - | chr1_1:57312216-57312235 | None:intergenic | 15.0% |
| !! | TTGCCAAATAAATATTTAAA+TGG | - | chr1_1:57312686-57312705 | None:intergenic | 15.0% |
| !!! | AACAGTTATTGATTATATTT+TGG | - | chr1_1:57313081-57313100 | None:intergenic | 15.0% |
| !! | TTACTAAAATAACACAAATT+GGG | - | chr1_1:57313651-57313670 | None:intergenic | 15.0% |
| !! | ATTACTAAAATAACACAAAT+TGG | - | chr1_1:57313652-57313671 | None:intergenic | 15.0% |
| !! | TATCATATGTCTTATGATAT+AGG | + | chr1_1:57308932-57308951 | Msa0030830:CDS | 20.0% |
| !! | AAATTTAAAAGAGAAGGAAA+AGG | + | chr1_1:57309795-57309814 | Msa0030830:CDS | 20.0% |
| !! | AATAGGATTCTAATCAATTA+AGG | - | chr1_1:57310359-57310378 | None:intergenic | 20.0% |
| !!! | TGATTAGAATCCTATTTTTA+TGG | + | chr1_1:57310363-57310382 | Msa0030830:intron | 20.0% |
| !!! | TGGTGTTTTTTTTTTTAGTA+TGG | + | chr1_1:57310383-57310402 | Msa0030830:intron | 20.0% |
| !! | TTATATATTGGAAAAAGCAA+AGG | - | chr1_1:57310611-57310630 | None:intergenic | 20.0% |
| !!! | TTTTTCCAATATATAAGTTC+TGG | + | chr1_1:57310615-57310634 | Msa0030830:CDS | 20.0% |
| !! | AAATACCAGAACTTATATAT+TGG | - | chr1_1:57310623-57310642 | None:intergenic | 20.0% |
| !!! | TCTTATGTTGTTTATAAAGT+TGG | + | chr1_1:57310660-57310679 | Msa0030830:CDS | 20.0% |
| !! | CAATCTCAAATTGAAAAAAA+TGG | + | chr1_1:57310732-57310751 | Msa0030830:CDS | 20.0% |
| !! | AAATGTGTGAAAAAGAAAAA+GGG | - | chr1_1:57311128-57311147 | None:intergenic | 20.0% |
| !! | AAAATGTGTGAAAAAGAAAA+AGG | - | chr1_1:57311129-57311148 | None:intergenic | 20.0% |
| !! | TTCATGAAAATTATGAAGAA+TGG | - | chr1_1:57311184-57311203 | None:intergenic | 20.0% |
| !!! | AACATTTTGTAAACTATTAG+AGG | + | chr1_1:57311202-57311221 | Msa0030830:intron | 20.0% |
| !!! | TAACTCTAAAACTAATAATC+CGG | + | chr1_1:57311454-57311473 | Msa0030830:intron | 20.0% |
| !! | CTTAGTGATTACTATTATAA+GGG | + | chr1_1:57311828-57311847 | Msa0030830:intron | 20.0% |
| !! | ATCATTTATGCAATGATTAT+TGG | + | chr1_1:57311903-57311922 | Msa0030830:intron | 20.0% |
| !! | AAAAAAATGATTTCACAAGA+TGG | + | chr1_1:57312163-57312182 | Msa0030830:intron | 20.0% |
| !! | ATTGAAGATAATAGTGATTA+TGG | - | chr1_1:57312575-57312594 | None:intergenic | 20.0% |
| !! | TTAATTATGTATGTAACATC+AGG | + | chr1_1:57312716-57312735 | Msa0030830:intron | 20.0% |
| !!! | AGTTATTGATTATATTTTGG+AGG | - | chr1_1:57313078-57313097 | None:intergenic | 20.0% |
| !!! | ATTTCTTGAAGTTAAAGTTT+TGG | + | chr1_1:57313172-57313191 | Msa0030830:intron | 20.0% |
| !!! | GGTGTTTATTTTTTTCTATT+TGG | + | chr1_1:57313193-57313212 | Msa0030830:intron | 20.0% |
| !! | TGGAATTAATAACACATTTA+TGG | - | chr1_1:57313337-57313356 | None:intergenic | 20.0% |
| !!! | AATAACACTTTACTTTTCAT+TGG | - | chr1_1:57313357-57313376 | None:intergenic | 20.0% |
| !! | AATAAGACAGTAAATACTAA+AGG | - | chr1_1:57313468-57313487 | None:intergenic | 20.0% |
| !! | TTTGAAAACATGTCAATATT+CGG | + | chr1_1:57313673-57313692 | Msa0030830:intron | 20.0% |
| !!! | TTTTTTAGTTGTATGATGAT+TGG | + | chr1_1:57314549-57314568 | Msa0030830:intron | 20.0% |
| !!! | GAAGCAAATTTTATTTCTAT+TGG | - | chr1_1:57314882-57314901 | None:intergenic | 20.0% |
| ! | GATAGTCATAATGATTCAAA+AGG | + | chr1_1:57309259-57309278 | Msa0030830:CDS | 25.0% |
| !!! | AGAAAAGGATAGTTTTAATG+CGG | + | chr1_1:57309294-57309313 | Msa0030830:CDS | 25.0% |
| ! | AAGAATCAGAAAAATACCAT+AGG | + | chr1_1:57309341-57309360 | Msa0030830:CDS | 25.0% |
| ! | AGAATCAGAAAAATACCATA+GGG | + | chr1_1:57309342-57309361 | Msa0030830:CDS | 25.0% |
| ! | AGAGAAAGATAGAAAAAGAA+AGG | + | chr1_1:57309549-57309568 | Msa0030830:CDS | 25.0% |
| ! | CAATATACAAGTTAGCAATA+CGG | + | chr1_1:57309627-57309646 | Msa0030830:CDS | 25.0% |
| ! | AATATACAAGTTAGCAATAC+GGG | + | chr1_1:57309628-57309647 | Msa0030830:CDS | 25.0% |
| ! | TAAAGACAAGAGAAAAGAAA+GGG | + | chr1_1:57309963-57309982 | Msa0030830:CDS | 25.0% |
| ! | TTGAAGCTTCATAATTACAT+TGG | + | chr1_1:57310322-57310341 | Msa0030830:intron | 25.0% |
| ! | TACTAGAATGAATATAACGA+AGG | - | chr1_1:57310410-57310429 | None:intergenic | 25.0% |
| !! | TATATAAGTTCTGGTATTTC+AGG | + | chr1_1:57310624-57310643 | Msa0030830:CDS | 25.0% |
| ! | TAAGAAAAATGAAGCTTACT+TGG | - | chr1_1:57310827-57310846 | None:intergenic | 25.0% |
| !! | GCATTCCTTTTAATACTTAA+AGG | + | chr1_1:57311292-57311311 | Msa0030830:intron | 25.0% |
| !!! | AACTCTAAAACTAATAATCC+GGG | + | chr1_1:57311455-57311474 | Msa0030830:intron | 25.0% |
| ! | GAAGATTCAGATAAATCAAA+AGG | - | chr1_1:57311570-57311589 | None:intergenic | 25.0% |
| ! | TGTAAGATATAAGTATAGGA+TGG | - | chr1_1:57311772-57311791 | None:intergenic | 25.0% |
| ! | ATGCTGTAAGATATAAGTAT+AGG | - | chr1_1:57311776-57311795 | None:intergenic | 25.0% |
| ! | GCTTAGTGATTACTATTATA+AGG | + | chr1_1:57311827-57311846 | Msa0030830:intron | 25.0% |
| ! | TGATTTCTATGCAAACTTAA+TGG | - | chr1_1:57311887-57311906 | None:intergenic | 25.0% |
| !! | TTGAACTTGTTCATAATGTT+AGG | + | chr1_1:57312000-57312019 | Msa0030830:intron | 25.0% |
| ! | TATGCTATTATGAAAATCTG+AGG | + | chr1_1:57312064-57312083 | Msa0030830:intron | 25.0% |
| ! | AGAGTTACATTATTGTATTC+AGG | + | chr1_1:57312295-57312314 | Msa0030830:intron | 25.0% |
| !! | ATATTTACTTGCCTTTTAAG+TGG | + | chr1_1:57312596-57312615 | Msa0030830:intron | 25.0% |
| !! | ACTGAGAGTATATTTAGAAT+CGG | + | chr1_1:57312631-57312650 | Msa0030830:intron | 25.0% |
| ! | ATTGTGAAGGTAATATCAAA+AGG | + | chr1_1:57312824-57312843 | Msa0030830:intron | 25.0% |
| ! | CAAACAGTTAGATATTAAGT+TGG | - | chr1_1:57312875-57312894 | None:intergenic | 25.0% |
| !!! | GTATTTACTGTCTTATTTTG+CGG | + | chr1_1:57313471-57313490 | Msa0030830:intron | 25.0% |
| ! | CATCTGTTATCTAATACTAT+AGG | - | chr1_1:57313734-57313753 | None:intergenic | 25.0% |
| ! | TTCAACAAAATAACAATCAG+TGG | - | chr1_1:57314056-57314075 | None:intergenic | 25.0% |
| ! | TACTCATTTGAAACTGAAGA+CGG | - | chr1_1:57308914-57308933 | None:intergenic | 30.0% |
| TATGTCTTATGATATAGGTC+AGG | + | chr1_1:57308937-57308956 | Msa0030830:CDS | 30.0% | |
| !! | CAGAATATATTTTTGCCCTA+TGG | - | chr1_1:57309360-57309379 | None:intergenic | 30.0% |
| AAAATATATTCTGATCCTCC+TGG | + | chr1_1:57309367-57309386 | Msa0030830:CDS | 30.0% | |
| ! | GAGAACAAAATTGATTCCAA+AGG | + | chr1_1:57309511-57309530 | Msa0030830:CDS | 30.0% |
| AGCAAGATAAAGATGTTGAA+AGG | + | chr1_1:57309734-57309753 | Msa0030830:CDS | 30.0% | |
| AAGATAAAGATGTTGAAAGG+TGG | + | chr1_1:57309737-57309756 | Msa0030830:CDS | 30.0% | |
| AGATAAAGATGTTGAAAGGT+GGG | + | chr1_1:57309738-57309757 | Msa0030830:CDS | 30.0% | |
| ! | GCTATTTGAAACATCTTTCT+CGG | - | chr1_1:57309851-57309870 | None:intergenic | 30.0% |
| CTAAAGACAAGAGAAAAGAA+AGG | + | chr1_1:57309962-57309981 | Msa0030830:CDS | 30.0% | |
| AGTGAAGTCTATAACTATAG+TGG | + | chr1_1:57310087-57310106 | Msa0030830:CDS | 30.0% | |
| TAGCAAACAATGAAACATGA+AGG | - | chr1_1:57310222-57310241 | None:intergenic | 30.0% | |
| TTCATTCTAGTAACTATAGC+TGG | + | chr1_1:57310418-57310437 | Msa0030830:intron | 30.0% | |
| !! | ATGCTATCATTTTGTTTCAG+TGG | + | chr1_1:57310466-57310485 | Msa0030830:CDS | 30.0% |
| ATTGGAAAAAGCAAAGGAAA+AGG | - | chr1_1:57310605-57310624 | None:intergenic | 30.0% | |
| ATTTGTAGCAGTAACATACT+CGG | - | chr1_1:57310802-57310821 | None:intergenic | 30.0% | |
| ACAATCAAAGGCTCAATTAA+AGG | - | chr1_1:57311155-57311174 | None:intergenic | 30.0% | |
| ATTGAGCCTTTGATTGTAAT+TGG | + | chr1_1:57311158-57311177 | Msa0030830:intron | 30.0% | |
| CAAGGCCTTTAAGTATTAAA+AGG | - | chr1_1:57311300-57311319 | None:intergenic | 30.0% | |
| ! | ATTGCTTCCTTTGTTTATGA+AGG | + | chr1_1:57311405-57311424 | Msa0030830:intron | 30.0% |
| TTACTGTCCTTCATAAACAA+AGG | - | chr1_1:57311415-57311434 | None:intergenic | 30.0% | |
| ! | TCAGATAAATCAAAAGGTAC+CGG | - | chr1_1:57311564-57311583 | None:intergenic | 30.0% |
| AATTACGCAGTCTTAAATAG+AGG | - | chr1_1:57311612-57311631 | None:intergenic | 30.0% | |
| GGTTTAAAAATAGCAAGCAA+GGG | - | chr1_1:57311692-57311711 | None:intergenic | 30.0% | |
| TGGTTTAAAAATAGCAAGCA+AGG | - | chr1_1:57311693-57311712 | None:intergenic | 30.0% | |
| !!! | AGTTCAGACCTATAGTTTTT+TGG | - | chr1_1:57311713-57311732 | None:intergenic | 30.0% |
| ! | TATTATGAAAATCTGAGGCT+TGG | + | chr1_1:57312069-57312088 | Msa0030830:intron | 30.0% |
| ! | AGGGTGCATAAATTAGTTTA+CGG | - | chr1_1:57312113-57312132 | None:intergenic | 30.0% |
| TAAATCTTCATGCCAAACTA+GGG | - | chr1_1:57312132-57312151 | None:intergenic | 30.0% | |
| ATAAATCTTCATGCCAAACT+AGG | - | chr1_1:57312133-57312152 | None:intergenic | 30.0% | |
| ! | TGGTATGTCTTTTACAAAAC+TGG | + | chr1_1:57312376-57312395 | Msa0030830:intron | 30.0% |
| ! | TTTTACAAAACTGGTGCATT+AGG | + | chr1_1:57312385-57312404 | Msa0030830:intron | 30.0% |
| TTTACAAAACTGGTGCATTA+GGG | + | chr1_1:57312386-57312405 | Msa0030830:intron | 30.0% | |
| ! | TGTATGGACATACAATCTTT+TGG | - | chr1_1:57312551-57312570 | None:intergenic | 30.0% |
| TAATAGTGATTATGGCTGTA+TGG | - | chr1_1:57312567-57312586 | None:intergenic | 30.0% | |
| CTTAGTCATTACCACTTAAA+AGG | - | chr1_1:57312610-57312629 | None:intergenic | 30.0% | |
| ! | GTATATTTAGAATCGGATTC+AGG | + | chr1_1:57312638-57312657 | Msa0030830:intron | 30.0% |
| CTGTTTGTTTATCTTCAGAA+AGG | + | chr1_1:57312888-57312907 | Msa0030830:intron | 30.0% | |
| TTTGTTTATCTTCAGAAAGG+AGG | + | chr1_1:57312891-57312910 | Msa0030830:intron | 30.0% | |
| !! | CTGTTATGTTGTTTCATAGA+TGG | + | chr1_1:57313096-57313115 | Msa0030830:intron | 30.0% |
| ! | GTTGGTTATGTTCTATTTTC+TGG | + | chr1_1:57313224-57313243 | Msa0030830:intron | 30.0% |
| !! | TCATTTTTCAGAATGCATTG+CGG | + | chr1_1:57313497-57313516 | Msa0030830:intron | 30.0% |
| AATCTAATATTGTGCTGTGT+TGG | + | chr1_1:57313609-57313628 | Msa0030830:intron | 30.0% | |
| !! | AAAGGGAGAAGTTTTGTATT+TGG | + | chr1_1:57313910-57313929 | Msa0030830:CDS | 30.0% |
| TAAGTTCAAAGAATTCGTGA+AGG | + | chr1_1:57314178-57314197 | Msa0030830:intron | 30.0% | |
| TGGATATTTGCACTATGATT+AGG | + | chr1_1:57314569-57314588 | Msa0030830:intron | 30.0% | |
| TCTTTCGCTTCTACTATTAA+GGG | + | chr1_1:57314735-57314754 | Msa0030830:three_prime_UTR | 30.0% | |
| GACTCTTCATGAGATTTCTT+AGG | - | chr1_1:57308833-57308852 | None:intergenic | 35.0% | |
| ATGATATAGGTCAGGATTCT+CGG | + | chr1_1:57308945-57308964 | Msa0030830:CDS | 35.0% | |
| TGAGAAGAGGTTAGAATCAA+GGG | + | chr1_1:57309072-57309091 | Msa0030830:CDS | 35.0% | |
| GATGTTTGGAGAAGTAAGAA+AGG | + | chr1_1:57309156-57309175 | Msa0030830:CDS | 35.0% | |
| !! | TTTTCACTTTTAGCACTCTG+AGG | - | chr1_1:57309184-57309203 | None:intergenic | 35.0% |
| ! | TCAGAGTGCTAAAAGTGAAA+AGG | + | chr1_1:57309183-57309202 | Msa0030830:CDS | 35.0% |
| AGGTGATACTAAGACAGAAA+AGG | + | chr1_1:57309279-57309298 | Msa0030830:CDS | 35.0% | |
| ATTCTTTCCAATCCAAGTGA+AGG | - | chr1_1:57309327-57309346 | None:intergenic | 35.0% | |
| TTTAGATCTATCGTCACCTT+TGG | - | chr1_1:57309530-57309549 | None:intergenic | 35.0% | |
| AAAGAAAGGAAGTGAAGCAT+CGG | + | chr1_1:57309563-57309582 | Msa0030830:CDS | 35.0% | |
| GTACAAGTAAGCAATACGAT+TGG | + | chr1_1:57309691-57309710 | Msa0030830:CDS | 35.0% | |
| ACATCTTTATCTTGCTTCAG+AGG | - | chr1_1:57309730-57309749 | None:intergenic | 35.0% | |
| AGATGTTTCAAATAGCGAGA+AGG | + | chr1_1:57309855-57309874 | Msa0030830:CDS | 35.0% | |
| TGAACAAGAAACTGTCTTAC+CGG | + | chr1_1:57309906-57309925 | Msa0030830:CDS | 35.0% | |
| GTGATCTTTGTATCCTCTTA+CGG | - | chr1_1:57310119-57310138 | None:intergenic | 35.0% | |
| GTAAGAGGATACAAAGATCA+CGG | + | chr1_1:57310118-57310137 | Msa0030830:CDS | 35.0% | |
| TAAGAGGATACAAAGATCAC+GGG | + | chr1_1:57310119-57310138 | Msa0030830:CDS | 35.0% | |
| ACAATGAAACATGAAGGAAG+AGG | - | chr1_1:57310216-57310235 | None:intergenic | 35.0% | |
| GCCAGCAATTGATTATCAAT+GGG | - | chr1_1:57310533-57310552 | None:intergenic | 35.0% | |
| TGCCAGCAATTGATTATCAA+TGG | - | chr1_1:57310534-57310553 | None:intergenic | 35.0% | |
| ! | TGGTATTTCAGGTAAAGTAG+AGG | + | chr1_1:57310635-57310654 | Msa0030830:CDS | 35.0% |
| ! | AATGGTGAAAGCTCTAACAA+TGG | + | chr1_1:57310750-57310769 | Msa0030830:CDS | 35.0% |
| ! | TCTCATCAATTGCGTTCTTT+TGG | + | chr1_1:57310870-57310889 | Msa0030830:intron | 35.0% |
| GAATGGCCAATTACAATCAA+AGG | - | chr1_1:57311167-57311186 | None:intergenic | 35.0% | |
| !! | ATTAGAGGCCTTTTCTAAAG+AGG | + | chr1_1:57311217-57311236 | Msa0030830:intron | 35.0% |
| ! | ATAAGCTGCCTCTTTAGAAA+AGG | - | chr1_1:57311228-57311247 | None:intergenic | 35.0% |
| ATGTTCAACAGTAAGGAACA+AGG | - | chr1_1:57311318-57311337 | None:intergenic | 35.0% | |
| ACAGTGAATGTTCAACAGTA+AGG | - | chr1_1:57311325-57311344 | None:intergenic | 35.0% | |
| TACTGTTGAACATTCACTGT+TGG | + | chr1_1:57311325-57311344 | Msa0030830:intron | 35.0% | |
| !! | AACTTGCTGATATCTGTGTT+TGG | + | chr1_1:57311360-57311379 | Msa0030830:intron | 35.0% |
| ! | ACTTGCTGATATCTGTGTTT+GGG | + | chr1_1:57311361-57311380 | Msa0030830:intron | 35.0% |
| AATAATCCGGGATGCTAATA+TGG | + | chr1_1:57311467-57311486 | Msa0030830:intron | 35.0% | |
| TCCATATTCTGCCAATAATC+CGG | + | chr1_1:57311542-57311561 | Msa0030830:intron | 35.0% | |
| !! | ATCAAAAGGTACCGGATTAT+TGG | - | chr1_1:57311556-57311575 | None:intergenic | 35.0% |
| CTTAAATAGAGGTGGAACTA+TGG | - | chr1_1:57311601-57311620 | None:intergenic | 35.0% | |
| AGGAAGACTTCAAGAATAAG+AGG | - | chr1_1:57311656-57311675 | None:intergenic | 35.0% | |
| CTTATTCTTGAAGTCTTCCT+TGG | + | chr1_1:57311656-57311675 | Msa0030830:intron | 35.0% | |
| CTATGCAAACTTAATGGCTA+TGG | - | chr1_1:57311881-57311900 | None:intergenic | 35.0% | |
| AGATTTGACTGACACTAAGA+TGG | - | chr1_1:57311968-57311987 | None:intergenic | 35.0% | |
| ATCTTAGTGTCAGTCAAATC+TGG | + | chr1_1:57311967-57311986 | Msa0030830:intron | 35.0% | |
| TTGTTCATAATGTTAGGCGA+TGG | + | chr1_1:57312006-57312025 | Msa0030830:intron | 35.0% | |
| ! | GTGCATAAATTAGTTTACGG+TGG | - | chr1_1:57312110-57312129 | None:intergenic | 35.0% |
| CTAATTTATGCACCCTAGTT+TGG | + | chr1_1:57312117-57312136 | Msa0030830:intron | 35.0% | |
| CATTATTGTATTCAGGTCAG+AGG | + | chr1_1:57312302-57312321 | Msa0030830:intron | 35.0% | |
| ! | TAGGGTGTTCTTACATATAC+TGG | + | chr1_1:57312404-57312423 | Msa0030830:intron | 35.0% |
| ! | ATGGACATACAATCTTTTGG+AGG | - | chr1_1:57312548-57312567 | None:intergenic | 35.0% |
| ! | CAATAGTTGATGTATGTGTG+AGG | - | chr1_1:57312941-57312960 | None:intergenic | 35.0% |
| ! | TTATTGAGAAGCACAAATGC+AGG | - | chr1_1:57313134-57313153 | None:intergenic | 35.0% |
| TTCTATTTGGACTGTTCAGT+TGG | + | chr1_1:57313206-57313225 | Msa0030830:intron | 35.0% | |
| ! | TTGTGCTTTGTTATGCTTTC+AGG | + | chr1_1:57313256-57313275 | Msa0030830:intron | 35.0% |
| AGACAGTAAATACTAAAGGC+CGG | - | chr1_1:57313464-57313483 | None:intergenic | 35.0% | |
| CAACATAAACTACCATACCA+AGG | - | chr1_1:57313574-57313593 | None:intergenic | 35.0% | |
| CTTGGTATGGTAGTTTATGT+TGG | + | chr1_1:57313572-57313591 | Msa0030830:intron | 35.0% | |
| ! | TATAAGCATTGTAGCAGACA+AGG | + | chr1_1:57313850-57313869 | Msa0030830:CDS | 35.0% |
| ! | ATAAGCATTGTAGCAGACAA+GGG | + | chr1_1:57313851-57313870 | Msa0030830:CDS | 35.0% |
| ACATCTGCTCGATTGAAAAA+GGG | + | chr1_1:57313893-57313912 | Msa0030830:CDS | 35.0% | |
| ! | TTTTCACCATTTGCAGAATG+TGG | - | chr1_1:57314361-57314380 | None:intergenic | 35.0% |
| GCATCAATCATAACATGATC+AGG | - | chr1_1:57314391-57314410 | None:intergenic | 35.0% | |
| ATGTTATGATTGATGCGTTC+CGG | + | chr1_1:57314395-57314414 | Msa0030830:CDS | 35.0% | |
| TTTGCACTATGATTAGGTGT+TGG | + | chr1_1:57314575-57314594 | Msa0030830:intron | 35.0% | |
| GATATACAATGGTCTCAAAC+TGG | + | chr1_1:57314618-57314637 | Msa0030830:CDS | 35.0% | |
| AAAGGAATATACCCTTGCAA+GGG | + | chr1_1:57314656-57314675 | Msa0030830:CDS | 35.0% | |
| GTCTTTCGCTTCTACTATTA+AGG | + | chr1_1:57314734-57314753 | Msa0030830:three_prime_UTR | 35.0% | |
| TTCTACTATTAAGGGAGTGA+TGG | + | chr1_1:57314743-57314762 | Msa0030830:three_prime_UTR | 35.0% | |
| TGATATAGGTCAGGATTCTC+GGG | + | chr1_1:57308946-57308965 | Msa0030830:CDS | 40.0% | |
| CTCCTCTTCATTCAGTGTAT+CGG | + | chr1_1:57309002-57309021 | Msa0030830:CDS | 40.0% | |
| ATCCGATACACTGAATGAAG+AGG | - | chr1_1:57309007-57309026 | None:intergenic | 40.0% | |
| TGAGGATCACTAGAAGATGA+CGG | - | chr1_1:57309031-57309050 | None:intergenic | 40.0% | |
| CTTGATTCTAACCTCTTCTC+AGG | - | chr1_1:57309073-57309092 | None:intergenic | 40.0% | |
| CTGAGAAGAGGTTAGAATCA+AGG | + | chr1_1:57309071-57309090 | Msa0030830:CDS | 40.0% | |
| GTTAGAATCAAGGGAATCCA+AGG | + | chr1_1:57309081-57309100 | Msa0030830:CDS | 40.0% | |
| CCAAGGATAGTAGAGATATC+CGG | + | chr1_1:57309098-57309117 | Msa0030830:CDS | 40.0% | |
| TCGTATCACGATTCTCAAAC+CGG | - | chr1_1:57309120-57309139 | None:intergenic | 40.0% | |
| TGATACGAAGACTGAGAAGA+AGG | + | chr1_1:57309132-57309151 | Msa0030830:CDS | 40.0% | |
| ACTGAGAAGAAGGAGATGTT+TGG | + | chr1_1:57309142-57309161 | Msa0030830:CDS | 40.0% | |
| GATGCACATGTTGAAGTTAG+AGG | + | chr1_1:57309205-57309224 | Msa0030830:CDS | 40.0% | |
| AGTTAGAGGAGATGACAACA+AGG | + | chr1_1:57309219-57309238 | Msa0030830:CDS | 40.0% | |
| ACAAGGATGGTAGACATGAT+CGG | + | chr1_1:57309236-57309255 | Msa0030830:CDS | 40.0% | |
| !!! | GATAGTTTTAATGCGGCTAG+CGG | + | chr1_1:57309301-57309320 | Msa0030830:CDS | 40.0% |
| TGTGTATTCCCACGTAACAT+GGG | - | chr1_1:57309412-57309431 | None:intergenic | 40.0% | |
| TTGTGTATTCCCACGTAACA+TGG | - | chr1_1:57309413-57309432 | None:intergenic | 40.0% | |
| ATGTTACGTGGGAATACACA+AGG | + | chr1_1:57309412-57309431 | Msa0030830:CDS | 40.0% | |
| GAATACACAAGGTTCAGTTG+AGG | + | chr1_1:57309423-57309442 | Msa0030830:CDS | 40.0% | |
| ! | AAGAAAGGAAGTGAAGCATC+GGG | + | chr1_1:57309564-57309583 | Msa0030830:CDS | 40.0% |
| GTAAGCAATACGATTGGTGA+TGG | + | chr1_1:57309697-57309716 | Msa0030830:CDS | 40.0% | |
| AGGAAAAGGATCAGATGAAG+AGG | + | chr1_1:57309809-57309828 | Msa0030830:CDS | 40.0% | |
| GGAAAAGGATCAGATGAAGA+GGG | + | chr1_1:57309810-57309829 | Msa0030830:CDS | 40.0% | |
| GGTAAGACAGTTTCTTGTTC+AGG | - | chr1_1:57309907-57309926 | None:intergenic | 40.0% | |
| ! | TCTTTTTGCTTCTTCTGCTC+CGG | - | chr1_1:57309928-57309947 | None:intergenic | 40.0% |
| ! | GAAAGGGAAGCTGATTTAGT+AGG | + | chr1_1:57309979-57309998 | Msa0030830:CDS | 40.0% |
| ! | AAGCTGATTTAGTAGGAGAC+AGG | + | chr1_1:57309986-57310005 | Msa0030830:CDS | 40.0% |
| TTTGACAAGGAATCAGACGA+TGG | + | chr1_1:57310030-57310049 | Msa0030830:CDS | 40.0% | |
| AAGAGGATACAAAGATCACG+GGG | + | chr1_1:57310120-57310139 | Msa0030830:CDS | 40.0% | |
| ! | AAAGTACCCTTCGTTGTCTT+GGG | - | chr1_1:57310190-57310209 | None:intergenic | 40.0% |
| TAGCTGGACATATATGTTGC+AGG | + | chr1_1:57310434-57310453 | Msa0030830:intron | 40.0% | |
| CATATATGTTGCAGGTCTCA+AGG | + | chr1_1:57310442-57310461 | Msa0030830:intron | 40.0% | |
| TTGTTTCAGTGGCTTCATGA+AGG | + | chr1_1:57310477-57310496 | Msa0030830:CDS | 40.0% | |
| ! | GTGCCGGCAGAAATTATTAT+TGG | + | chr1_1:57310507-57310526 | Msa0030830:CDS | 40.0% |
| GGGCCAATAATAATTTCTGC+CGG | - | chr1_1:57310513-57310532 | None:intergenic | 40.0% | |
| ! | GCCCATTGATAATCAATTGC+TGG | + | chr1_1:57310529-57310548 | Msa0030830:CDS | 40.0% |
| TGCAAGAGCTGATAAAGTTG+TGG | + | chr1_1:57310691-57310710 | Msa0030830:CDS | 40.0% | |
| AGAGCTGATAAAGTTGTGGA+CGG | + | chr1_1:57310695-57310714 | Msa0030830:CDS | 40.0% | |
| ATATCCGAATTTCCAGAGTG+GGG | - | chr1_1:57310776-57310795 | None:intergenic | 40.0% | |
| GATATCCGAATTTCCAGAGT+GGG | - | chr1_1:57310777-57310796 | None:intergenic | 40.0% | |
| ! | CATCAATTGCGTTCTTTTGG+TGG | + | chr1_1:57310873-57310892 | Msa0030830:intron | 40.0% |
| GCAAGCAAAAGATGAAGCAA+AGG | - | chr1_1:57311019-57311038 | None:intergenic | 40.0% | |
| CCATATCCATATTAGCATCC+CGG | - | chr1_1:57311476-57311495 | None:intergenic | 40.0% | |
| ACCGGATTATTGGCAGAATA+TGG | - | chr1_1:57311546-57311565 | None:intergenic | 40.0% | |
| TACGCAGTCTTAAATAGAGG+TGG | - | chr1_1:57311609-57311628 | None:intergenic | 40.0% | |
| GCAAGGGACTTAAATTTCCA+AGG | - | chr1_1:57311676-57311695 | None:intergenic | 40.0% | |
| ! | TTGGACTAGATTGACTAGTC+TGG | + | chr1_1:57311922-57311941 | Msa0030830:intron | 40.0% |
| TATTGTATTCAGGTCAGAGG+CGG | + | chr1_1:57312305-57312324 | Msa0030830:intron | 40.0% | |
| AGACATACCAGCAACAAGAT+CGG | - | chr1_1:57312366-57312385 | None:intergenic | 40.0% | |
| AAGAATTACGCGCAACCATT+CGG | + | chr1_1:57312516-57312535 | Msa0030830:CDS | 40.0% | |
| GCTGCAGTTATCGAATTGAA+CGG | + | chr1_1:57312795-57312814 | Msa0030830:CDS | 40.0% | |
| GTTTATCTTCAGAAAGGAGG+TGG | + | chr1_1:57312894-57312913 | Msa0030830:intron | 40.0% | |
| ATAGATGCTGAAACAAACCG+AGG | - | chr1_1:57313018-57313037 | None:intergenic | 40.0% | |
| ! | TGCTTTGTTATGCTTTCAGG+TGG | + | chr1_1:57313259-57313278 | Msa0030830:intron | 40.0% |
| GACAGTAAATACTAAAGGCC+GGG | - | chr1_1:57313463-57313482 | None:intergenic | 40.0% | |
| ACAATCTTTGCAATGAGCCT+TGG | + | chr1_1:57313554-57313573 | Msa0030830:CDS | 40.0% | |
| AATCGAGCAGATGTGTATTG+TGG | - | chr1_1:57313887-57313906 | None:intergenic | 40.0% | |
| CACATCTGCTCGATTGAAAA+AGG | + | chr1_1:57313892-57313911 | Msa0030830:CDS | 40.0% | |
| !!! | TACGACCAGGTATTTTGACA+CGG | + | chr1_1:57313940-57313959 | Msa0030830:intron | 40.0% |
| AACTTCCGTGTCAAAATACC+TGG | - | chr1_1:57313948-57313967 | None:intergenic | 40.0% | |
| !!! | AGATACGAGCTTTGTTTTGC+TGG | + | chr1_1:57314262-57314281 | Msa0030830:intron | 40.0% |
| !! | TTGTTTTGCTGGAGAGAAGT+TGG | + | chr1_1:57314273-57314292 | Msa0030830:CDS | 40.0% |
| ATTGTGCGCATCAATTTCTG+TGG | - | chr1_1:57314445-57314464 | None:intergenic | 40.0% | |
| CAGAAATTGATGCGCACAAT+TGG | + | chr1_1:57314445-57314464 | Msa0030830:CDS | 40.0% | |
| AATACCTCGACATGTTCAAG+AGG | - | chr1_1:57314481-57314500 | None:intergenic | 40.0% | |
| ! | TGGACTGGGAAGATATACAA+TGG | + | chr1_1:57314607-57314626 | Msa0030830:CDS | 40.0% |
| AATGGTCTCAAACTGGTGTT+TGG | + | chr1_1:57314625-57314644 | Msa0030830:CDS | 40.0% | |
| GAAAGGAATATACCCTTGCA+AGG | + | chr1_1:57314655-57314674 | Msa0030830:CDS | 40.0% | |
| TACTATTAAGGGAGTGATGG+TGG | + | chr1_1:57314746-57314765 | Msa0030830:three_prime_UTR | 40.0% | |
| ACTATTAAGGGAGTGATGGT+GGG | + | chr1_1:57314747-57314766 | Msa0030830:three_prime_UTR | 40.0% | |
| CCGGATATCTCTACTATCCT+TGG | - | chr1_1:57309101-57309120 | None:intergenic | 45.0% | |
| AGAGGAGATGACAACAAGGA+TGG | + | chr1_1:57309223-57309242 | Msa0030830:CDS | 45.0% | |
| CAAGGATGGTAGACATGATC+GGG | + | chr1_1:57309237-57309256 | Msa0030830:CDS | 45.0% | |
| ACACAAGGTTCAGTTGAGGT+TGG | + | chr1_1:57309427-57309446 | Msa0030830:CDS | 45.0% | |
| AGGTTCAGTTGAGGTTGGAA+AGG | + | chr1_1:57309432-57309451 | Msa0030830:CDS | 45.0% | |
| AGAGTTCATCAGCAGAACCA+AGG | + | chr1_1:57309455-57309474 | Msa0030830:CDS | 45.0% | |
| GAGTTCATCAGCAGAACCAA+GGG | + | chr1_1:57309456-57309475 | Msa0030830:CDS | 45.0% | |
| TTAGCAATACGGGTAGTGAC+TGG | + | chr1_1:57309638-57309657 | Msa0030830:CDS | 45.0% | |
| AAGATGTTGAAAGGTGGGAG+AGG | + | chr1_1:57309743-57309762 | Msa0030830:CDS | 45.0% | |
| AGATGTTGAAAGGTGGGAGA+GGG | + | chr1_1:57309744-57309763 | Msa0030830:CDS | 45.0% | |
| ! | GAAGGAACCTGTTGATGGAT+CGG | + | chr1_1:57309873-57309892 | Msa0030830:CDS | 45.0% |
| AGAGGATACAAAGATCACGG+GGG | + | chr1_1:57310121-57310140 | Msa0030830:CDS | 45.0% | |
| !! | GAAAGTACCCTTCGTTGTCT+TGG | - | chr1_1:57310191-57310210 | None:intergenic | 45.0% |
| CGATATCCGAATTTCCAGAG+TGG | - | chr1_1:57310778-57310797 | None:intergenic | 45.0% | |
| CCGGGATGCTAATATGGATA+TGG | + | chr1_1:57311473-57311492 | Msa0030830:intron | 45.0% | |
| TTAGTTTACGGTGGTAGCAC+TGG | - | chr1_1:57312101-57312120 | None:intergenic | 45.0% | |
| TATGACTCCGATCTTGTTGC+TGG | + | chr1_1:57312356-57312375 | Msa0030830:CDS | 45.0% | |
| TGCACAGTTCTCATGCATAC+AGG | + | chr1_1:57312452-57312471 | Msa0030830:intron | 45.0% | |
| AATTCTTGTATGGCTGCAGG+AGG | - | chr1_1:57312503-57312522 | None:intergenic | 45.0% | |
| CGTAATTCTTGTATGGCTGC+AGG | - | chr1_1:57312506-57312525 | None:intergenic | 45.0% | |
| GGTTGCGCGTAATTCTTGTA+TGG | - | chr1_1:57312513-57312532 | None:intergenic | 45.0% | |
| AGAATTACGCGCAACCATTC+GGG | + | chr1_1:57312517-57312536 | Msa0030830:CDS | 45.0% | |
| !! | AATTTTAGCACCCCAAGCAC+GGG | - | chr1_1:57312774-57312793 | None:intergenic | 45.0% |
| !! | CAATTTTAGCACCCCAAGCA+CGG | - | chr1_1:57312775-57312794 | None:intergenic | 45.0% |
| !! | TGAACGGTGTTGCATTGTGA+AGG | + | chr1_1:57312811-57312830 | Msa0030830:CDS | 45.0% |
| GTTGATGTATGTGTGAGGCA+AGG | - | chr1_1:57312936-57312955 | None:intergenic | 45.0% | |
| TACCATGCTTCAACACGTGT+AGG | - | chr1_1:57313413-57313432 | None:intergenic | 45.0% | |
| CTTTGCAATGAGCCTTGGTA+TGG | + | chr1_1:57313559-57313578 | Msa0030830:intron | 45.0% | |
| CAATATTCGGCTATGCAACG+TGG | + | chr1_1:57313686-57313705 | Msa0030830:intron | 45.0% | |
| ATTTGGAGACACATACGACC+AGG | + | chr1_1:57313927-57313946 | Msa0030830:CDS | 45.0% | |
| TCAGTTAAAAGAACGCCAGG+AGG | - | chr1_1:57314229-57314248 | None:intergenic | 45.0% | |
| GACTCAGTTAAAAGAACGCC+AGG | - | chr1_1:57314232-57314251 | None:intergenic | 45.0% | |
| CACCATCCACATTCTGCAAA+TGG | + | chr1_1:57314352-57314371 | Msa0030830:CDS | 45.0% | |
| CACCATTTGCAGAATGTGGA+TGG | - | chr1_1:57314357-57314376 | None:intergenic | 45.0% | |
| TTATGATTGATGCGTTCCGG+TGG | + | chr1_1:57314398-57314417 | Msa0030830:CDS | 45.0% | |
| !! | GCACTATGATTAGGTGTTGG+AGG | + | chr1_1:57314578-57314597 | Msa0030830:intron | 45.0% |
| !! | TTAGGTGTTGGAGGAGAACT+TGG | + | chr1_1:57314587-57314606 | Msa0030830:intron | 45.0% |
| CAAACTGGTGTTTGGATTGC+AGG | + | chr1_1:57314633-57314652 | Msa0030830:CDS | 45.0% | |
| TGGTGTTTGGATTGCAGGAA+AGG | + | chr1_1:57314638-57314657 | Msa0030830:CDS | 45.0% | |
| CAAGAAATGCACCCTTGCAA+GGG | - | chr1_1:57314670-57314689 | None:intergenic | 45.0% | |
| ACAAGAAATGCACCCTTGCA+AGG | - | chr1_1:57314671-57314690 | None:intergenic | 45.0% | |
| TATGCACCTGCGTCTTCATG+CGG | - | chr1_1:57308878-57308897 | None:intergenic | 50.0% | |
| CGCAGGTGCATATCCGAAAT+TGG | + | chr1_1:57308886-57308905 | Msa0030830:CDS | 50.0% | |
| ACTGAAGACGGCGCCAATTT+CGG | - | chr1_1:57308902-57308921 | None:intergenic | 50.0% | |
| TATAGGTCAGGATTCTCGGG+TGG | + | chr1_1:57308949-57308968 | Msa0030830:CDS | 50.0% | |
| GATCTTCTCTCCACATCACG+AGG | - | chr1_1:57308983-57309002 | None:intergenic | 50.0% | |
| ATCCTGTTGGTCCTGAGAAG+AGG | + | chr1_1:57309059-57309078 | Msa0030830:CDS | 50.0% | |
| AACCTCTTCTCAGGACCAAC+AGG | - | chr1_1:57309064-57309083 | None:intergenic | 50.0% | |
| TCAGCAGAACCAAGGGAGTA+TGG | + | chr1_1:57309463-57309482 | Msa0030830:CDS | 50.0% | |
| ATCAGATGAAGAGGGAGTCG+TGG | + | chr1_1:57309818-57309837 | Msa0030830:CDS | 50.0% | |
| ATGAAGAGGGAGTCGTGGAA+TGG | + | chr1_1:57309823-57309842 | Msa0030830:CDS | 50.0% | |
| AGCGAGAAGGAACCTGTTGA+TGG | + | chr1_1:57309868-57309887 | Msa0030830:CDS | 50.0% | |
| ! | ACCTGTTGATGGATCGGCTA+AGG | + | chr1_1:57309879-57309898 | Msa0030830:CDS | 50.0% |
| ACCTTAGCCGATCCATCAAC+AGG | - | chr1_1:57309883-57309902 | None:intergenic | 50.0% | |
| ACAGGTCTGATAAGCGCAGT+AGG | + | chr1_1:57310004-57310023 | Msa0030830:CDS | 50.0% | |
| CAGGTCTGATAAGCGCAGTA+GGG | + | chr1_1:57310005-57310024 | Msa0030830:CDS | 50.0% | |
| AGGTCTGATAAGCGCAGTAG+GGG | + | chr1_1:57310006-57310025 | Msa0030830:CDS | 50.0% | |
| TCAGACGATGGATGTGCTGA+TGG | + | chr1_1:57310042-57310061 | Msa0030830:CDS | 50.0% | |
| ! | CAGACGATGGATGTGCTGAT+GGG | + | chr1_1:57310043-57310062 | Msa0030830:CDS | 50.0% |
| ! | ATGGATGTGCTGATGGGCAA+GGG | + | chr1_1:57310049-57310068 | Msa0030830:CDS | 50.0% |
| TGGGCAAGGGGCAATAGAAA+AGG | + | chr1_1:57310062-57310081 | Msa0030830:CDS | 50.0% | |
| ATAGTGGTCAGCACCGTAAG+AGG | + | chr1_1:57310103-57310122 | Msa0030830:CDS | 50.0% | |
| GTGGCTTCATGAAGGAACAC+TGG | + | chr1_1:57310485-57310504 | Msa0030830:CDS | 50.0% | |
| TCATGAAGGAACACTGGTGC+CGG | + | chr1_1:57310491-57310510 | Msa0030830:CDS | 50.0% | |
| TTGCTGGCACTGTTTAGCTG+TGG | + | chr1_1:57310545-57310564 | Msa0030830:CDS | 50.0% | |
| GGCACTGTTTAGCTGTGGAA+TGG | + | chr1_1:57310550-57310569 | Msa0030830:CDS | 50.0% | |
| ! | ATGGCCCCACTCTGGAAATT+CGG | + | chr1_1:57310769-57310788 | Msa0030830:CDS | 50.0% |
| CTGGTCCAAGTAACTGCAGT+CGG | + | chr1_1:57311941-57311960 | Msa0030830:intron | 50.0% | |
| TGGTCCAAGTAACTGCAGTC+GGG | + | chr1_1:57311942-57311961 | Msa0030830:intron | 50.0% | |
| TGTTAGGCGATGGAGCTGAA+TGG | + | chr1_1:57312016-57312035 | Msa0030830:intron | 50.0% | |
| GTTAGGCGATGGAGCTGAAT+GGG | + | chr1_1:57312017-57312036 | Msa0030830:intron | 50.0% | |
| TTAGGCGATGGAGCTGAATG+GGG | + | chr1_1:57312018-57312037 | Msa0030830:intron | 50.0% | |
| !! | TTTTGGAGGTAGCACCCGAA+TGG | - | chr1_1:57312534-57312553 | None:intergenic | 50.0% |
| ACAATGTACGTTCCCGTGCT+TGG | + | chr1_1:57312759-57312778 | Msa0030830:CDS | 50.0% | |
| CAATGTACGTTCCCGTGCTT+GGG | + | chr1_1:57312760-57312779 | Msa0030830:CDS | 50.0% | |
| AATGTACGTTCCCGTGCTTG+GGG | + | chr1_1:57312761-57312780 | Msa0030830:CDS | 50.0% | |
| ! | CGTGCTTGGGGTGCTAAAAT+TGG | + | chr1_1:57312773-57312792 | Msa0030830:CDS | 50.0% |
| GTCCTACACGTGTTGAAGCA+TGG | + | chr1_1:57313408-57313427 | Msa0030830:intron | 50.0% | |
| GTCACGTAGAAAAAGCCTCC+TGG | + | chr1_1:57314211-57314230 | Msa0030830:intron | 50.0% | |
| ! | TGCTGGAGAGAAGTTGGTCA+AGG | + | chr1_1:57314279-57314298 | Msa0030830:CDS | 50.0% |
| GCTTCTTACAACGAGACCAC+CGG | - | chr1_1:57314417-57314436 | None:intergenic | 50.0% | |
| CGCATCAATTTCTGTGGCAG+AGG | - | chr1_1:57314439-57314458 | None:intergenic | 50.0% | |
| CGACATGTTCAAGAGGCAGA+GGG | - | chr1_1:57314474-57314493 | None:intergenic | 50.0% | |
| TCGACATGTTCAAGAGGCAG+AGG | - | chr1_1:57314475-57314494 | None:intergenic | 50.0% | |
| TCTGCCTCTTGAACATGTCG+AGG | + | chr1_1:57314474-57314493 | Msa0030830:CDS | 50.0% | |
| TGTTGGAGGAGAACTTGGAC+TGG | + | chr1_1:57314592-57314611 | Msa0030830:CDS | 50.0% | |
| GTTGGAGGAGAACTTGGACT+GGG | + | chr1_1:57314593-57314612 | Msa0030830:CDS | 50.0% | |
| AAACACCCGCATGAAGACGC+AGG | + | chr1_1:57308869-57308888 | Msa0030830:CDS | 55.0% | |
| ATGCACCTGCGTCTTCATGC+GGG | - | chr1_1:57308877-57308896 | None:intergenic | 55.0% | |
| !! | GGTAAAAGCGCCTCGTGATG+TGG | + | chr1_1:57308970-57308989 | Msa0030830:CDS | 55.0% |
| CTCAGGACCAACAGGATGCT+CGG | - | chr1_1:57309056-57309075 | None:intergenic | 55.0% | |
| CTAGCGGCCTTCACTTGGAT+TGG | + | chr1_1:57309317-57309336 | Msa0030830:CDS | 55.0% | |
| AACCCTGGCCCATGTTACGT+GGG | + | chr1_1:57309401-57309420 | Msa0030830:CDS | 55.0% | |
| TTCCCACGTAACATGGGCCA+GGG | - | chr1_1:57309406-57309425 | None:intergenic | 55.0% | |
| ATTCCCACGTAACATGGGCC+AGG | - | chr1_1:57309407-57309426 | None:intergenic | 55.0% | |
| ! | GCAGAACCAAGGGAGTATGG+CGG | + | chr1_1:57309466-57309485 | Msa0030830:CDS | 55.0% |
| ! | CAGAACCAAGGGAGTATGGC+GGG | + | chr1_1:57309467-57309486 | Msa0030830:CDS | 55.0% |
| ! | AGAACCAAGGGAGTATGGCG+GGG | + | chr1_1:57309468-57309487 | Msa0030830:CDS | 55.0% |
| GGGAAGCTCGTGAAGCTGTT+GGG | + | chr1_1:57309488-57309507 | Msa0030830:CDS | 55.0% | |
| GGAAGCTCGTGAAGCTGTTG+GGG | + | chr1_1:57309489-57309508 | Msa0030830:CDS | 55.0% | |
| !! | AGGAAGTGAAGCATCGGGAC+TGG | + | chr1_1:57309569-57309588 | Msa0030830:CDS | 55.0% |
| !! | GGAAGTGAAGCATCGGGACT+GGG | + | chr1_1:57309570-57309589 | Msa0030830:CDS | 55.0% |
| !! | GAAGTGAAGCATCGGGACTG+GGG | + | chr1_1:57309571-57309590 | Msa0030830:CDS | 55.0% |
| !! | AAGTGAAGCATCGGGACTGG+GGG | + | chr1_1:57309572-57309591 | Msa0030830:CDS | 55.0% |
| ! | GATGGATGTGCTGATGGGCA+AGG | + | chr1_1:57310048-57310067 | Msa0030830:CDS | 55.0% |
| ! | TGGATGTGCTGATGGGCAAG+GGG | + | chr1_1:57310050-57310069 | Msa0030830:CDS | 55.0% |
| GGAGTCCTCAGGTGCCTAAT+CGG | + | chr1_1:57310142-57310161 | Msa0030830:CDS | 55.0% | |
| GAGTCCTCAGGTGCCTAATC+GGG | + | chr1_1:57310143-57310162 | Msa0030830:CDS | 55.0% | |
| CTGAAACGAGGCTCCCGATT+AGG | - | chr1_1:57310159-57310178 | None:intergenic | 55.0% | |
| CTAATCGGGAGCCTCGTTTC+AGG | + | chr1_1:57310157-57310176 | Msa0030830:CDS | 55.0% | |
| ACCCTTCGTTGTCTTGGGTG+CGG | - | chr1_1:57310185-57310204 | None:intergenic | 55.0% | |
| CTCTAACAATGGCCCCACTC+TGG | + | chr1_1:57310761-57310780 | Msa0030830:CDS | 55.0% | |
| ATGGCCCGACTGCAGTTACT+TGG | - | chr1_1:57311949-57311968 | None:intergenic | 55.0% | |
| ACACATCAGTCCCCCAAAGC+TGG | - | chr1_1:57312331-57312350 | None:intergenic | 55.0% | |
| CAGGAGGTGGAGATGCTGTT+GGG | - | chr1_1:57312487-57312506 | None:intergenic | 55.0% | |
| TCTTGTATGGCTGCAGGAGG+TGG | - | chr1_1:57312500-57312519 | None:intergenic | 55.0% | |
| TGGAGCGGACAATGACTACC+AGG | + | chr1_1:57312985-57313004 | Msa0030830:CDS | 55.0% | |
| GGAGCGGACAATGACTACCA+GGG | + | chr1_1:57312986-57313005 | Msa0030830:CDS | 55.0% | |
| GCTGAAACAAACCGAGGCTG+CGG | - | chr1_1:57313012-57313031 | None:intergenic | 55.0% | |
| CTAGCCTAGCTAGAACGACC+CGG | + | chr1_1:57313442-57313461 | Msa0030830:intron | 55.0% | |
| TCGGCTATGCAACGTGGATC+AGG | + | chr1_1:57313692-57313711 | Msa0030830:intron | 55.0% | |
| CAAGGCTACACCAGCAACTC+AGG | + | chr1_1:57314297-57314316 | Msa0030830:CDS | 55.0% | |
| GGTTCATTCGCCTGAGTTGC+TGG | - | chr1_1:57314310-57314329 | None:intergenic | 55.0% | |
| GCAACTCAGGCGAATGAACC+AGG | + | chr1_1:57314310-57314329 | Msa0030830:CDS | 55.0% | |
| GAATGAACCAGGCGCAGAGA+AGG | + | chr1_1:57314321-57314340 | Msa0030830:CDS | 55.0% | |
| ! | TTTTGAGCCTTCTCTGCGCC+TGG | - | chr1_1:57314331-57314350 | None:intergenic | 55.0% |
| CCAACAGGATGCTCGGCATG+AGG | - | chr1_1:57309049-57309068 | None:intergenic | 60.0% | |
| CCTCATGCCGAGCATCCTGT+TGG | + | chr1_1:57309046-57309065 | Msa0030830:CDS | 60.0% | |
| TGATCCTCCTGGCGCGAGTT+TGG | + | chr1_1:57309378-57309397 | Msa0030830:CDS | 60.0% | |
| GAACCCTGGCCCATGTTACG+TGG | + | chr1_1:57309400-57309419 | Msa0030830:CDS | 60.0% | |
| GGGGAAGCTCGTGAAGCTGT+TGG | + | chr1_1:57309487-57309506 | Msa0030830:CDS | 60.0% | |
| !! | AGTGAAGCATCGGGACTGGG+GGG | + | chr1_1:57309573-57309592 | Msa0030830:CDS | 60.0% |
| ! | GCGCAGTAGGGGCTTTGACA+AGG | + | chr1_1:57310017-57310036 | Msa0030830:CDS | 60.0% |
| AAGATCACGGGGGAGTCCTC+AGG | + | chr1_1:57310131-57310150 | Msa0030830:CDS | 60.0% | |
| TCCCGCACCCAAGACAACGA+AGG | + | chr1_1:57310180-57310199 | Msa0030830:CDS | 60.0% | |
| CCCTTCGTTGTCTTGGGTGC+GGG | - | chr1_1:57310184-57310203 | None:intergenic | 60.0% | |
| CCCGCACCCAAGACAACGAA+GGG | + | chr1_1:57310181-57310200 | Msa0030830:CDS | 60.0% | |
| GCAGGAGGTGGAGATGCTGT+TGG | - | chr1_1:57312488-57312507 | None:intergenic | 60.0% | |
| ACAGCCACGGGAGCAAGAGT+CGG | - | chr1_1:57312966-57312985 | None:intergenic | 60.0% | |
| ATTGTCCGCTCCACAGCCAC+GGG | - | chr1_1:57312978-57312997 | None:intergenic | 60.0% | |
| CATTGTCCGCTCCACAGCCA+CGG | - | chr1_1:57312979-57312998 | None:intergenic | 60.0% | |
| ! | AAGGCCGGGTCGTTCTAGCT+AGG | - | chr1_1:57313449-57313468 | None:intergenic | 60.0% |
| TGCGGCTAGCGGCCTTCACT+TGG | + | chr1_1:57309312-57309331 | Msa0030830:CDS | 65.0% | |
| GGTTCCAAACTCGCGCCAGG+AGG | - | chr1_1:57309385-57309404 | None:intergenic | 65.0% | |
| CAGGGTTCCAAACTCGCGCC+AGG | - | chr1_1:57309388-57309407 | None:intergenic | 65.0% | |
| ! | CTGGCGCGAGTTTGGAACCC+TGG | + | chr1_1:57309386-57309405 | Msa0030830:CDS | 65.0% |
| GCTTCCCCGCCATACTCCCT+TGG | - | chr1_1:57309475-57309494 | None:intergenic | 65.0% | |
| GGCTCCCGATTAGGCACCTG+AGG | - | chr1_1:57310150-57310169 | None:intergenic | 65.0% | |
| TGGGTGCGGGACCTGAAACG+AGG | - | chr1_1:57310171-57310190 | None:intergenic | 65.0% | |
| AGGTCAGAGGCGGCCAGCTT+TGG | + | chr1_1:57312315-57312334 | Msa0030830:intron | 65.0% | |
| GGTCAGAGGCGGCCAGCTTT+GGG | + | chr1_1:57312316-57312335 | Msa0030830:intron | 65.0% | |
| GTCAGAGGCGGCCAGCTTTG+GGG | + | chr1_1:57312317-57312336 | Msa0030830:CDS | 65.0% | |
| ! | TCAGAGGCGGCCAGCTTTGG+GGG | + | chr1_1:57312318-57312337 | Msa0030830:CDS | 65.0% |
| ! | TGAGCCGACTCTTGCTCCCG+TGG | + | chr1_1:57312959-57312978 | Msa0030830:CDS | 65.0% |
| GACTCTTGCTCCCGTGGCTG+TGG | + | chr1_1:57312965-57312984 | Msa0030830:CDS | 65.0% | |
| TTGCTCCCGTGGCTGTGGAG+CGG | + | chr1_1:57312970-57312989 | Msa0030830:CDS | 65.0% | |
| GCATCGGGACTGGGGGGAGA+AGG | + | chr1_1:57309579-57309598 | Msa0030830:CDS | 70.0% | |
| GACTACCAGGGCCGCAGCCT+CGG | + | chr1_1:57312998-57313017 | Msa0030830:CDS | 70.0% | |
| ACAAACCGAGGCTGCGGCCC+TGG | - | chr1_1:57313006-57313025 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 57308818 | 57314902 | 57308818 | ID=Msa0030830;Name=Msa0030830 |
| chr1_1 | mRNA | 57308818 | 57314902 | 57308818 | ID=Msa0030830-mRNA-1;Parent=Msa0030830;Name=Msa0030830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.88|0.8|1|0.88|0.9|10|201|892 |
| chr1_1 | exon | 57308818 | 57310233 | 57308818 | ID=Msa0030830-mRNA-1:exon:17281;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57310456 | 57310827 | 57310456 | ID=Msa0030830-mRNA-1:exon:17282;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57312317 | 57312377 | 57312317 | ID=Msa0030830-mRNA-1:exon:17283;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57312459 | 57312557 | 57312459 | ID=Msa0030830-mRNA-1:exon:17284;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57312738 | 57312832 | 57312738 | ID=Msa0030830-mRNA-1:exon:17285;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57312906 | 57313019 | 57312906 | ID=Msa0030830-mRNA-1:exon:17286;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57313508 | 57313575 | 57313508 | ID=Msa0030830-mRNA-1:exon:17287;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57313838 | 57313948 | 57313838 | ID=Msa0030830-mRNA-1:exon:17288;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57314264 | 57314495 | 57314264 | ID=Msa0030830-mRNA-1:exon:17289;Parent=Msa0030830-mRNA-1 |
| chr1_1 | exon | 57314591 | 57314902 | 57314591 | ID=Msa0030830-mRNA-1:exon:17290;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57308818 | 57310233 | 57308818 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57310456 | 57310827 | 57310456 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57312317 | 57312377 | 57312317 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57312459 | 57312557 | 57312459 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57312738 | 57312832 | 57312738 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57312906 | 57313019 | 57312906 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57313508 | 57313575 | 57313508 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57313838 | 57313948 | 57313838 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57314264 | 57314495 | 57314264 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | CDS | 57314591 | 57314701 | 57314591 | ID=Msa0030830-mRNA-1:cds;Parent=Msa0030830-mRNA-1 |
| chr1_1 | three_prime_UTR | 57314702 | 57314902 | 57314702 | ID=Msa0030830-mRNA-1:three_prime_utr;Parent=Msa0030830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
