AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078340 MtrunA17_Chr1g0188471 95.349 473 22 0 1 473 1 473 0.0 900
Msa0078340 MtrunA17_Chr1g0188471 98.889 360 4 0 533 892 462 821 0.0 758
Msa0078340 MtrunA17_Chr6g0477131 78.889 360 76 0 533 892 380 739 0.0 617
Msa0078340 MtrunA17_Chr6g0477131 50.459 436 148 12 38 462 2 380 9.10e-102 333
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078340 AT5G08450.3 76.087 368 75 3 533 892 556 918 0.0 594
Msa0078340 AT5G08450.3 42.161 472 182 13 55 462 112 556 8.52e-79 275
Msa0078340 AT5G08450.1 76.087 368 75 3 533 892 556 918 0.0 594
Msa0078340 AT5G08450.1 42.161 472 182 13 55 462 112 556 8.52e-79 275
Msa0078340 AT5G08450.2 76.087 368 75 3 533 892 556 918 0.0 594
Msa0078340 AT5G08450.2 42.161 472 182 13 55 462 112 556 8.52e-79 275

Find 244 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAATTAATGTACTTATT+TGG 0.131352 1_2:+55776513 Msa0078340:three_prime_UTR
GTCTTTCGCTTCTACTATTA+AGG 0.145555 1_2:+55776454 Msa0078340:three_prime_UTR
CACATCTGCTCGATTGAAAA+AGG 0.213489 1_2:+55775612 Msa0078340:CDS
GGTCAGAGGCGGCCAGCTTT+GGG 0.215858 1_2:+55774036 Msa0078340:intron
TATATAAGTTCTGGTATTTC+AGG 0.243212 1_2:+55772344 Msa0078340:CDS
AGGTCAGAGGCGGCCAGCTT+TGG 0.245444 1_2:+55774035 Msa0078340:intron
CGTGCTTGGGGTGCTAAAAT+TGG 0.248389 1_2:+55774493 Msa0078340:CDS
CAAACTGGTGTTTGGATTGC+AGG 0.277043 1_2:+55776353 Msa0078340:CDS
GTGCCGGCAGAAATTATTAT+TGG 0.291264 1_2:+55772227 Msa0078340:CDS
GGTTCATTCGCCTGAGTTGC+TGG 0.305306 1_2:-55776027 None:intergenic
GGGAAGCTCGTGAAGCTGTT+GGG 0.312197 1_2:+55771208 Msa0078340:CDS
ACTGAAGACGGCGCCAATTT+CGG 0.315173 1_2:-55770619 None:intergenic
CGCAGGTGCATATCCGAAAT+TGG 0.316104 1_2:+55770606 Msa0078340:CDS
TGATCCTCCTGGCGCGAGTT+TGG 0.318436 1_2:+55771098 Msa0078340:CDS
CTAATCGGGAGCCTCGTTTC+AGG 0.319281 1_2:+55771877 Msa0078340:CDS
GACTCTTCATGAGATTTCTT+AGG 0.324563 1_2:-55770550 None:intergenic
AAATACCAGAACTTATATAT+TGG 0.329432 1_2:-55772340 None:intergenic
GGAGTCCTCAGGTGCCTAAT+CGG 0.339096 1_2:+55771862 Msa0078340:CDS
AAGAATTACGCGCAACCATT+CGG 0.339382 1_2:+55774236 Msa0078340:CDS
GGTAAGACAGTTTCTTGTTC+AGG 0.349229 1_2:-55771624 None:intergenic
TCTTATGTTGTTTATAAAGT+TGG 0.350015 1_2:+55772380 Msa0078340:CDS
GCTATTTGAAACATCTTTCT+CGG 0.351179 1_2:-55771568 None:intergenic
GGAAGTGAAGCATCGGGACT+GGG 0.361092 1_2:+55771290 Msa0078340:CDS
CAGAAATTGATGCGCACAAT+TGG 0.362794 1_2:+55776165 Msa0078340:CDS
TGTATGGACATACAATCTTT+TGG 0.367782 1_2:-55774268 None:intergenic
ACTGAGAAGAAGGAGATGTT+TGG 0.371321 1_2:+55770862 Msa0078340:CDS
TATCATATGTCTTATGATAT+AGG 0.371947 1_2:+55770652 Msa0078340:CDS
AATGGTCTCAAACTGGTGTT+TGG 0.374846 1_2:+55776345 Msa0078340:CDS
AGAATTACGCGCAACCATTC+GGG 0.375276 1_2:+55774237 Msa0078340:CDS
CAATGTACGTTCCCGTGCTT+GGG 0.376198 1_2:+55774480 Msa0078340:CDS
GAAAGGGAAGCTGATTTAGT+AGG 0.382092 1_2:+55771699 Msa0078340:CDS
TTTAGATCTATCGTCACCTT+TGG 0.390168 1_2:-55771247 None:intergenic
GCCCATTGATAATCAATTGC+TGG 0.392653 1_2:+55772249 Msa0078340:CDS
CCCTTCGTTGTCTTGGGTGC+GGG 0.393639 1_2:-55771901 None:intergenic
GAAAGTACCCTTCGTTGTCT+TGG 0.394292 1_2:-55771908 None:intergenic
TCAGCAGAACCAAGGGAGTA+TGG 0.398466 1_2:+55771183 Msa0078340:CDS
TCTTTCGCTTCTACTATTAA+GGG 0.401795 1_2:+55776455 Msa0078340:three_prime_UTR
TGCGGCTAGCGGCCTTCACT+TGG 0.401963 1_2:+55771032 Msa0078340:CDS
AGGAAGTGAAGCATCGGGAC+TGG 0.402780 1_2:+55771289 Msa0078340:CDS
GACTCTTGCTCCCGTGGCTG+TGG 0.403687 1_2:+55774685 Msa0078340:CDS
GAGTCCTCAGGTGCCTAATC+GGG 0.404322 1_2:+55771863 Msa0078340:CDS
ATGATATAGGTCAGGATTCT+CGG 0.404344 1_2:+55770665 Msa0078340:CDS
ACAATGTACGTTCCCGTGCT+TGG 0.404868 1_2:+55774479 Msa0078340:CDS
TGAACAAGAAACTGTCTTAC+CGG 0.408860 1_2:+55771626 Msa0078340:CDS
CTTGATTCTAACCTCTTCTC+AGG 0.412606 1_2:-55770790 None:intergenic
TATGACTCCGATCTTGTTGC+TGG 0.415495 1_2:+55774076 Msa0078340:CDS
ATGGCCCCACTCTGGAAATT+CGG 0.415777 1_2:+55772489 Msa0078340:CDS
CTGAAACGAGGCTCCCGATT+AGG 0.420816 1_2:-55771876 None:intergenic
CTAGCGGCCTTCACTTGGAT+TGG 0.421167 1_2:+55771037 Msa0078340:CDS
AACCTCTTCTCAGGACCAAC+AGG 0.425551 1_2:-55770781 None:intergenic
ACAAACCGAGGCTGCGGCCC+TGG 0.427516 1_2:-55774723 None:intergenic
AAAGTACCCTTCGTTGTCTT+GGG 0.428159 1_2:-55771907 None:intergenic
GTGATCTTTGTATCCTCTTA+CGG 0.431829 1_2:-55771836 None:intergenic
GATGTTTGGAGAAGTAAGAA+AGG 0.434703 1_2:+55770876 Msa0078340:CDS
TGCCAGCAATTGATTATCAA+TGG 0.435849 1_2:-55772251 None:intergenic
CCGGATATCTCTACTATCCT+TGG 0.436996 1_2:-55770818 None:intergenic
AGGAAAAGGATCAGATGAAG+AGG 0.440033 1_2:+55771529 Msa0078340:CDS
AGCGAGAAGGAACCTGTTGA+TGG 0.445827 1_2:+55771588 Msa0078340:CDS
TTAGGTGTTGGAGGAGAACT+TGG 0.446465 1_2:+55776307 Msa0078340:intron
GATATACAATGGTCTCAAAC+TGG 0.449001 1_2:+55776338 Msa0078340:CDS
ACCTTAGCCGATCCATCAAC+AGG 0.450588 1_2:-55771600 None:intergenic
GTCAGAGGCGGCCAGCTTTG+GGG 0.459665 1_2:+55774037 Msa0078340:CDS
GATGCACATGTTGAAGTTAG+AGG 0.460869 1_2:+55770925 Msa0078340:CDS
GCATCAATCATAACATGATC+AGG 0.460916 1_2:-55776108 None:intergenic
GACTACCAGGGCCGCAGCCT+CGG 0.462584 1_2:+55774718 Msa0078340:CDS
ACCCTTCGTTGTCTTGGGTG+CGG 0.464608 1_2:-55771902 None:intergenic
CGCATCAATTTCTGTGGCAG+AGG 0.465734 1_2:-55776156 None:intergenic
CACCATCCACATTCTGCAAA+TGG 0.465832 1_2:+55776072 Msa0078340:CDS
GCAGGAGGTGGAGATGCTGT+TGG 0.466066 1_2:-55774205 None:intergenic
TTGTGTATTCCCACGTAACA+TGG 0.468448 1_2:-55771130 None:intergenic
TGGTGTTTGGATTGCAGGAA+AGG 0.471986 1_2:+55776358 Msa0078340:CDS
TCTTGTATGGCTGCAGGAGG+TGG 0.472238 1_2:-55774217 None:intergenic
GGGGAAGCTCGTGAAGCTGT+TGG 0.476726 1_2:+55771207 Msa0078340:CDS
TCGTATCACGATTCTCAAAC+CGG 0.482743 1_2:-55770837 None:intergenic
TAAAGACAAGAGAAAAGAAA+GGG 0.483019 1_2:+55771683 Msa0078340:CDS
TCAGAGGCGGCCAGCTTTGG+GGG 0.483142 1_2:+55774038 Msa0078340:CDS
CAGAACCAAGGGAGTATGGC+GGG 0.483321 1_2:+55771187 Msa0078340:CDS
GTTTATCTTCAGAAAGGAGG+TGG 0.484444 1_2:+55774614 Msa0078340:intron
CTAAAGACAAGAGAAAAGAA+AGG 0.484997 1_2:+55771682 Msa0078340:CDS
GCACTATGATTAGGTGTTGG+AGG 0.485559 1_2:+55776298 Msa0078340:intron
CTCTAACAATGGCCCCACTC+TGG 0.489167 1_2:+55772481 Msa0078340:CDS
AAAAGAAAATTTAAAAGAGA+AGG 0.489507 1_2:+55771509 Msa0078340:CDS
CTGAGAAGAGGTTAGAATCA+AGG 0.489609 1_2:+55770791 Msa0078340:CDS
AGTGAAGTCTATAACTATAG+TGG 0.492425 1_2:+55771807 Msa0078340:CDS
CGTAATTCTTGTATGGCTGC+AGG 0.493153 1_2:-55774223 None:intergenic
CAGGAGGTGGAGATGCTGTT+GGG 0.493377 1_2:-55774204 None:intergenic
AGATAAAGATGTTGAAAGGT+GGG 0.496253 1_2:+55771458 Msa0078340:CDS
CAAGGATGGTAGACATGATC+GGG 0.500951 1_2:+55770957 Msa0078340:CDS
AAGATGTTGAAAGGTGGGAG+AGG 0.501264 1_2:+55771463 Msa0078340:CDS
CAGGGTTCCAAACTCGCGCC+AGG 0.501992 1_2:-55771105 None:intergenic
TCATGAAGGAACACTGGTGC+CGG 0.503226 1_2:+55772211 Msa0078340:CDS
TCAGAGTGCTAAAAGTGAAA+AGG 0.503292 1_2:+55770903 Msa0078340:CDS
CTCCTCTTCATTCAGTGTAT+CGG 0.505553 1_2:+55770722 Msa0078340:CDS
AATATACAAGTTAGCAATAC+GGG 0.505779 1_2:+55771348 Msa0078340:CDS
AGATGTTGAAAGGTGGGAGA+GGG 0.505990 1_2:+55771464 Msa0078340:CDS
ACATCTTTATCTTGCTTCAG+AGG 0.506057 1_2:-55771447 None:intergenic
ACCTGTTGATGGATCGGCTA+AGG 0.506107 1_2:+55771599 Msa0078340:CDS
ACAATCTTTGCAATGAGCCT+TGG 0.506694 1_2:+55775274 Msa0078340:CDS
TGCACAGTTCTCATGCATAC+AGG 0.508695 1_2:+55774172 Msa0078340:intron
GCAACTCAGGCGAATGAACC+AGG 0.509092 1_2:+55776030 Msa0078340:CDS
TTAGCAATACGGGTAGTGAC+TGG 0.510037 1_2:+55771358 Msa0078340:CDS
GGCACTGTTTAGCTGTGGAA+TGG 0.510691 1_2:+55772270 Msa0078340:CDS
GCTTCCCCGCCATACTCCCT+TGG 0.510806 1_2:-55771192 None:intergenic
ATTCCCACGTAACATGGGCC+AGG 0.511952 1_2:-55771124 None:intergenic
GGTTGCGCGTAATTCTTGTA+TGG 0.512360 1_2:-55774230 None:intergenic
GCTGAAACAAACCGAGGCTG+CGG 0.512908 1_2:-55774729 None:intergenic
GATAGTCATAATGATTCAAA+AGG 0.512917 1_2:+55770979 Msa0078340:CDS
ATGTTATGATTGATGCGTTC+CGG 0.513877 1_2:+55776115 Msa0078340:CDS
GCCAGCAATTGATTATCAAT+GGG 0.515076 1_2:-55772250 None:intergenic
CTGGCGCGAGTTTGGAACCC+TGG 0.518206 1_2:+55771106 Msa0078340:CDS
TGATATAGGTCAGGATTCTC+GGG 0.520646 1_2:+55770666 Msa0078340:CDS
ATTGTCCGCTCCACAGCCAC+GGG 0.521413 1_2:-55774695 None:intergenic
TACTATTAAGGGAGTGATGG+TGG 0.522100 1_2:+55776466 Msa0078340:three_prime_UTR
ATAGTGGTCAGCACCGTAAG+AGG 0.524152 1_2:+55771823 Msa0078340:CDS
TCAGACGATGGATGTGCTGA+TGG 0.524170 1_2:+55771762 Msa0078340:CDS
AAGATAAAGATGTTGAAAGG+TGG 0.524455 1_2:+55771457 Msa0078340:CDS
AAATTTAAAAGAGAAGGAAA+AGG 0.524644 1_2:+55771515 Msa0078340:CDS
AAGCTGATTTAGTAGGAGAC+AGG 0.524761 1_2:+55771706 Msa0078340:CDS
ACAAGAAATGCACCCTTGCA+AGG 0.525240 1_2:-55776388 None:intergenic
CAATATACAAGTTAGCAATA+CGG 0.525660 1_2:+55771347 Msa0078340:CDS
GAATGAACCAGGCGCAGAGA+AGG 0.529663 1_2:+55776041 Msa0078340:CDS
CCAAGGATAGTAGAGATATC+CGG 0.529723 1_2:+55770818 Msa0078340:CDS
ACACAAGGTTCAGTTGAGGT+TGG 0.529870 1_2:+55771147 Msa0078340:CDS
AGGTGATACTAAGACAGAAA+AGG 0.531406 1_2:+55770999 Msa0078340:CDS
ACAGGTCTGATAAGCGCAGT+AGG 0.531771 1_2:+55771724 Msa0078340:CDS
TTGTTTCAGTGGCTTCATGA+AGG 0.533883 1_2:+55772197 Msa0078340:CDS
ATGGATGTGCTGATGGGCAA+GGG 0.536045 1_2:+55771769 Msa0078340:CDS
TATGTCTTATGATATAGGTC+AGG 0.537828 1_2:+55770657 Msa0078340:CDS
AAAGAAAGGAAGTGAAGCAT+CGG 0.538057 1_2:+55771283 Msa0078340:CDS
TGGAGCGGACAATGACTACC+AGG 0.540569 1_2:+55774705 Msa0078340:CDS
AAAATATATTCTGATCCTCC+TGG 0.540746 1_2:+55771087 Msa0078340:CDS
CACCATTTGCAGAATGTGGA+TGG 0.541504 1_2:-55776074 None:intergenic
CTCAGGACCAACAGGATGCT+CGG 0.542188 1_2:-55770773 None:intergenic
CATATATGTTGCAGGTCTCA+AGG 0.542324 1_2:+55772162 Msa0078340:intron
TGAGAAGAGGTTAGAATCAA+GGG 0.546444 1_2:+55770792 Msa0078340:CDS
GATGGATGTGCTGATGGGCA+AGG 0.547049 1_2:+55771768 Msa0078340:CDS
AAGAAAGGAAGTGAAGCATC+GGG 0.547344 1_2:+55771284 Msa0078340:CDS
TTCTACTATTAAGGGAGTGA+TGG 0.549056 1_2:+55776463 Msa0078340:three_prime_UTR
GGAAAAGGATCAGATGAAGA+GGG 0.549365 1_2:+55771530 Msa0078340:CDS
ATGAAGAGGGAGTCGTGGAA+TGG 0.551838 1_2:+55771543 Msa0078340:CDS
CAGGTCTGATAAGCGCAGTA+GGG 0.551861 1_2:+55771725 Msa0078340:CDS
GAAGTGAAGCATCGGGACTG+GGG 0.552074 1_2:+55771291 Msa0078340:CDS
GGAAGCTCGTGAAGCTGTTG+GGG 0.552492 1_2:+55771209 Msa0078340:CDS
TGCTGGAGAGAAGTTGGTCA+AGG 0.552942 1_2:+55775999 Msa0078340:CDS
GAGTTCATCAGCAGAACCAA+GGG 0.553737 1_2:+55771176 Msa0078340:CDS
CAAGGCTACACCAGCAACTC+AGG 0.553901 1_2:+55776017 Msa0078340:CDS
AATGGTGAAAGCTCTAACAA+TGG 0.554756 1_2:+55772470 Msa0078340:CDS
ATGCACCTGCGTCTTCATGC+GGG 0.555218 1_2:-55770594 None:intergenic
AAGTGAAGCATCGGGACTGG+GGG 0.556691 1_2:+55771292 Msa0078340:CDS
GTTAGAATCAAGGGAATCCA+AGG 0.556992 1_2:+55770801 Msa0078340:CDS
TAAGAGGATACAAAGATCAC+GGG 0.558324 1_2:+55771839 Msa0078340:CDS
TGGGCAAGGGGCAATAGAAA+AGG 0.561976 1_2:+55771782 Msa0078340:CDS
GGTAAAAGCGCCTCGTGATG+TGG 0.563039 1_2:+55770690 Msa0078340:CDS
TATGCACCTGCGTCTTCATG+CGG 0.564892 1_2:-55770595 None:intergenic
TTGCTCCCGTGGCTGTGGAG+CGG 0.565542 1_2:+55774690 Msa0078340:CDS
AATCGAGCAGATGTGTATTG+TGG 0.566279 1_2:-55775604 None:intergenic
TGATACGAAGACTGAGAAGA+AGG 0.566732 1_2:+55770852 Msa0078340:CDS
TGTTGGAGGAGAACTTGGAC+TGG 0.568034 1_2:+55776312 Msa0078340:CDS
TTTGTTTATCTTCAGAAAGG+AGG 0.569004 1_2:+55774611 Msa0078340:intron
GAAGGAACCTGTTGATGGAT+CGG 0.569303 1_2:+55771593 Msa0078340:CDS
AGGTTCAGTTGAGGTTGGAA+AGG 0.569711 1_2:+55771152 Msa0078340:CDS
CATTGTCCGCTCCACAGCCA+CGG 0.570099 1_2:-55774696 None:intergenic
TAGCAAACAATGAAACATGA+AGG 0.570136 1_2:-55771939 None:intergenic
GAACCCTGGCCCATGTTACG+TGG 0.571537 1_2:+55771120 Msa0078340:CDS
ACAAGGATGGTAGACATGAT+CGG 0.572899 1_2:+55770956 Msa0078340:CDS
CATTATTGTATTCAGGTCAG+AGG 0.574281 1_2:+55774022 Msa0078340:intron
TATAAGCATTGTAGCAGACA+AGG 0.576918 1_2:+55775570 Msa0078340:CDS
TGAGCCGACTCTTGCTCCCG+TGG 0.579023 1_2:+55774679 Msa0078340:CDS
ATCAGATGAAGAGGGAGTCG+TGG 0.581068 1_2:+55771538 Msa0078340:CDS
GAAAGGAATATACCCTTGCA+AGG 0.585289 1_2:+55776375 Msa0078340:CDS
AGCAAGATAAAGATGTTGAA+AGG 0.586136 1_2:+55771454 Msa0078340:CDS
ATTCTTTCCAATCCAAGTGA+AGG 0.587175 1_2:-55771044 None:intergenic
TCGACATGTTCAAGAGGCAG+AGG 0.587259 1_2:-55776192 None:intergenic
AGAGTTCATCAGCAGAACCA+AGG 0.587737 1_2:+55771175 Msa0078340:CDS
ATCCTGTTGGTCCTGAGAAG+AGG 0.593231 1_2:+55770779 Msa0078340:CDS
TGGATGTGCTGATGGGCAAG+GGG 0.595577 1_2:+55771770 Msa0078340:CDS
TTCCCACGTAACATGGGCCA+GGG 0.596850 1_2:-55771123 None:intergenic
CCTCATGCCGAGCATCCTGT+TGG 0.598265 1_2:+55770766 Msa0078340:CDS
AGACATACCAGCAACAAGAT+CGG 0.598403 1_2:-55774083 None:intergenic
TGCAAGAGCTGATAAAGTTG+TGG 0.600141 1_2:+55772411 Msa0078340:CDS
TGGTATTTCAGGTAAAGTAG+AGG 0.601143 1_2:+55772355 Msa0078340:CDS
GGGCCAATAATAATTTCTGC+CGG 0.601601 1_2:-55772230 None:intergenic
GTAAGCAATACGATTGGTGA+TGG 0.603069 1_2:+55771417 Msa0078340:CDS
GCGCAGTAGGGGCTTTGACA+AGG 0.603439 1_2:+55771737 Msa0078340:CDS
GCTTCTTACAACGAGACCAC+CGG 0.606502 1_2:-55776134 None:intergenic
TTGCTGGCACTGTTTAGCTG+TGG 0.607632 1_2:+55772265 Msa0078340:CDS
CCCGCACCCAAGACAACGAA+GGG 0.610400 1_2:+55771901 Msa0078340:CDS
ACAATGAAACATGAAGGAAG+AGG 0.610455 1_2:-55771933 None:intergenic
CCAACAGGATGCTCGGCATG+AGG 0.610635 1_2:-55770766 None:intergenic
GTACAAGTAAGCAATACGAT+TGG 0.611525 1_2:+55771411 Msa0078340:CDS
AGAGGAGATGACAACAAGGA+TGG 0.612778 1_2:+55770943 Msa0078340:CDS
CAAGAAATGCACCCTTGCAA+GGG 0.613007 1_2:-55776387 None:intergenic
GATATCCGAATTTCCAGAGT+GGG 0.613558 1_2:-55772494 None:intergenic
GTTGGAGGAGAACTTGGACT+GGG 0.614908 1_2:+55776313 Msa0078340:CDS
GGCTCCCGATTAGGCACCTG+AGG 0.618494 1_2:-55771867 None:intergenic
ACAGCCACGGGAGCAAGAGT+CGG 0.619177 1_2:-55774683 None:intergenic
TATTGTATTCAGGTCAGAGG+CGG 0.619235 1_2:+55774025 Msa0078340:intron
GTAAGAGGATACAAAGATCA+CGG 0.619894 1_2:+55771838 Msa0078340:CDS
AGATGTTTCAAATAGCGAGA+AGG 0.621242 1_2:+55771575 Msa0078340:CDS
GTGGCTTCATGAAGGAACAC+TGG 0.621597 1_2:+55772205 Msa0078340:CDS
ACTATTAAGGGAGTGATGGT+GGG 0.623081 1_2:+55776467 Msa0078340:three_prime_UTR
TGTGTATTCCCACGTAACAT+GGG 0.623181 1_2:-55771129 None:intergenic
ATCCGATACACTGAATGAAG+AGG 0.624856 1_2:-55770724 None:intergenic
GCTGCAGTTATCGAATTGAA+CGG 0.629213 1_2:+55774515 Msa0078340:CDS
AGGTCTGATAAGCGCAGTAG+GGG 0.630782 1_2:+55771726 Msa0078340:CDS
TGGGTGCGGGACCTGAAACG+AGG 0.631463 1_2:-55771888 None:intergenic
ATTGTGCGCATCAATTTCTG+TGG 0.633533 1_2:-55776162 None:intergenic
TGAACGGTGTTGCATTGTGA+AGG 0.636161 1_2:+55774531 Msa0078340:CDS
TCTGCCTCTTGAACATGTCG+AGG 0.636664 1_2:+55776194 Msa0078340:CDS
AATGTACGTTCCCGTGCTTG+GGG 0.639375 1_2:+55774481 Msa0078340:CDS
ATTTGGAGACACATACGACC+AGG 0.639905 1_2:+55775647 Msa0078340:CDS
ATAAGCATTGTAGCAGACAA+GGG 0.640627 1_2:+55775571 Msa0078340:CDS
AATACCTCGACATGTTCAAG+AGG 0.641245 1_2:-55776198 None:intergenic
CGACATGTTCAAGAGGCAGA+GGG 0.643401 1_2:-55776191 None:intergenic
AGAACCAAGGGAGTATGGCG+GGG 0.645192 1_2:+55771188 Msa0078340:CDS
AGAGCTGATAAAGTTGTGGA+CGG 0.646325 1_2:+55772415 Msa0078340:CDS
CAGACGATGGATGTGCTGAT+GGG 0.649559 1_2:+55771763 Msa0078340:CDS
AGTGAAGCATCGGGACTGGG+GGG 0.652868 1_2:+55771293 Msa0078340:CDS
GAGAACAAAATTGATTCCAA+AGG 0.653361 1_2:+55771231 Msa0078340:CDS
AATTCTTGTATGGCTGCAGG+AGG 0.654697 1_2:-55774220 None:intergenic
CGATATCCGAATTTCCAGAG+TGG 0.657411 1_2:-55772495 None:intergenic
GGTTCCAAACTCGCGCCAGG+AGG 0.657439 1_2:-55771102 None:intergenic
TGAGGATCACTAGAAGATGA+CGG 0.658731 1_2:-55770748 None:intergenic
TCCCGCACCCAAGACAACGA+AGG 0.660777 1_2:+55771900 Msa0078340:CDS
TACTCATTTGAAACTGAAGA+CGG 0.661966 1_2:-55770631 None:intergenic
AACCCTGGCCCATGTTACGT+GGG 0.662153 1_2:+55771121 Msa0078340:CDS
GATCTTCTCTCCACATCACG+AGG 0.664401 1_2:-55770700 None:intergenic
AAAGGAATATACCCTTGCAA+GGG 0.667302 1_2:+55776376 Msa0078340:CDS
ATGTTACGTGGGAATACACA+AGG 0.667886 1_2:+55771132 Msa0078340:CDS
GCAGAACCAAGGGAGTATGG+CGG 0.670054 1_2:+55771186 Msa0078340:CDS
AAACACCCGCATGAAGACGC+AGG 0.670959 1_2:+55770589 Msa0078340:CDS
TTATGATTGATGCGTTCCGG+TGG 0.672968 1_2:+55776118 Msa0078340:CDS
ATTTGTAGCAGTAACATACT+CGG 0.674038 1_2:-55772519 None:intergenic
AGTTAGAGGAGATGACAACA+AGG 0.674306 1_2:+55770939 Msa0078340:CDS
AAGAGGATACAAAGATCACG+GGG 0.691210 1_2:+55771840 Msa0078340:CDS
GGAGCGGACAATGACTACCA+GGG 0.693176 1_2:+55774706 Msa0078340:CDS
TGGACTGGGAAGATATACAA+TGG 0.693989 1_2:+55776327 Msa0078340:CDS
GAATACACAAGGTTCAGTTG+AGG 0.702018 1_2:+55771143 Msa0078340:CDS
TATAGGTCAGGATTCTCGGG+TGG 0.702496 1_2:+55770669 Msa0078340:CDS
GTTGATGTATGTGTGAGGCA+AGG 0.705622 1_2:-55774653 None:intergenic
ATATCCGAATTTCCAGAGTG+GGG 0.715872 1_2:-55772493 None:intergenic
TTTGACAAGGAATCAGACGA+TGG 0.737459 1_2:+55771750 Msa0078340:CDS
CAATAGTTGATGTATGTGTG+AGG 0.739184 1_2:-55774658 None:intergenic
AGAGGATACAAAGATCACGG+GGG 0.825867 1_2:+55771841 Msa0078340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTTTCTTTTTCTTT+GGG - chr1_2:55771504-55771523 None:intergenic 10.0%
!!! TTTTAAATTTTCTTTTTCTT+TGG - chr1_2:55771505-55771524 None:intergenic 10.0%
!! AATGAAAAAAAAAAAATAGA+AGG - chr1_2:55772713-55772732 None:intergenic 10.0%
!!! AGTATTACAATTAAATTTTA+AGG - chr1_2:55773950-55773969 None:intergenic 10.0%
!! TTTCCATTTAAATATTTATT+TGG + chr1_2:55774400-55774419 Msa0078340:intron 10.0%
!! TATAAAATAATATCAAGATA+AGG - chr1_2:55775498-55775517 None:intergenic 10.0%
!!! AATTTTTTTGTTTTGTTTTT+TGG + chr1_2:55776420-55776439 Msa0078340:exon 10.0%
!! AATTAATTAATGTACTTATT+TGG + chr1_2:55776513-55776532 Msa0078340:three_prime_UTR 10.0%
!! AAAAGAAAATTTAAAAGAGA+AGG + chr1_2:55771509-55771528 Msa0078340:CDS 15.0%
!! TTGAATGACAATATATTTAT+TGG - chr1_2:55771975-55771994 None:intergenic 15.0%
!! AAAAAAAACACCATAAAAAT+AGG - chr1_2:55772096-55772115 None:intergenic 15.0%
!! AAAAAAAAAAATAGAAGGAA+CGG - chr1_2:55772708-55772727 None:intergenic 15.0%
!!! TTTTTAAACCAAAAAACTAT+AGG + chr1_2:55773422-55773441 Msa0078340:intron 15.0%
!!! TTTTCATAATAGCATAAAAT+TGG - chr1_2:55773780-55773799 None:intergenic 15.0%
!!! ATTTTAAGGATATAGAAAAA+AGG - chr1_2:55773936-55773955 None:intergenic 15.0%
!! TTGCCAAATAAATATTTAAA+TGG - chr1_2:55774406-55774425 None:intergenic 15.0%
!!! AACAGTTATTGATTATATTT+TGG - chr1_2:55774801-55774820 None:intergenic 15.0%
!! TTACTAAAATAACACAAATT+GGG - chr1_2:55775371-55775390 None:intergenic 15.0%
!! ATTACTAAAATAACACAAAT+TGG - chr1_2:55775372-55775391 None:intergenic 15.0%
!! TATCATATGTCTTATGATAT+AGG + chr1_2:55770652-55770671 Msa0078340:CDS 20.0%
!! AAATTTAAAAGAGAAGGAAA+AGG + chr1_2:55771515-55771534 Msa0078340:CDS 20.0%
!! AATAGGATTCTAATCAATTA+AGG - chr1_2:55772079-55772098 None:intergenic 20.0%
!!! TGATTAGAATCCTATTTTTA+TGG + chr1_2:55772083-55772102 Msa0078340:intron 20.0%
!!! TGGTGTTTTTTTTTTTAGTA+TGG + chr1_2:55772103-55772122 Msa0078340:intron 20.0%
!! TTATATATTGGAAAAAGCAA+AGG - chr1_2:55772331-55772350 None:intergenic 20.0%
!!! TTTTTCCAATATATAAGTTC+TGG + chr1_2:55772335-55772354 Msa0078340:CDS 20.0%
!! AAATACCAGAACTTATATAT+TGG - chr1_2:55772343-55772362 None:intergenic 20.0%
!!! TCTTATGTTGTTTATAAAGT+TGG + chr1_2:55772380-55772399 Msa0078340:CDS 20.0%
!! CAATCTCAAATTGAAAAAAA+TGG + chr1_2:55772452-55772471 Msa0078340:CDS 20.0%
!! AAATGTGTGAAAAAGAAAAA+GGG - chr1_2:55772848-55772867 None:intergenic 20.0%
!! AAAATGTGTGAAAAAGAAAA+AGG - chr1_2:55772849-55772868 None:intergenic 20.0%
!! TTCATGAAAATTATGAAGAA+TGG - chr1_2:55772904-55772923 None:intergenic 20.0%
!!! AACATTTTGTAAACTATTAG+AGG + chr1_2:55772922-55772941 Msa0078340:intron 20.0%
!!! TAACTCTAAAACTAATAATC+CGG + chr1_2:55773174-55773193 Msa0078340:intron 20.0%
!! CTTAGTGATTACTATTATAA+GGG + chr1_2:55773548-55773567 Msa0078340:intron 20.0%
!! ATCATTTATGCAATGATTAT+TGG + chr1_2:55773623-55773642 Msa0078340:intron 20.0%
!! AAAAAAATGATTTCACAAGA+TGG + chr1_2:55773883-55773902 Msa0078340:intron 20.0%
!! ATTGAAGATAATAGTGATTA+TGG - chr1_2:55774295-55774314 None:intergenic 20.0%
!! TTAATTATGTATGTAACATC+AGG + chr1_2:55774436-55774455 Msa0078340:intron 20.0%
!!! AGTTATTGATTATATTTTGG+AGG - chr1_2:55774798-55774817 None:intergenic 20.0%
!!! ATTTCTTGAAGTTAAAGTTT+TGG + chr1_2:55774892-55774911 Msa0078340:intron 20.0%
!!! GGTGTTTATTTTTTTCTATT+TGG + chr1_2:55774913-55774932 Msa0078340:intron 20.0%
!! TGGAATTAATAACACATTTA+TGG - chr1_2:55775057-55775076 None:intergenic 20.0%
!!! AATAACACTTTACTTTTCAT+TGG - chr1_2:55775077-55775096 None:intergenic 20.0%
!! AATAAGACAGTAAATACTAA+AGG - chr1_2:55775188-55775207 None:intergenic 20.0%
!! TTTGAAAACATGTCAATATT+CGG + chr1_2:55775393-55775412 Msa0078340:intron 20.0%
!!! TTTTTTAGTTGTATGATGAT+TGG + chr1_2:55776269-55776288 Msa0078340:intron 20.0%
!!! GAAGCAAATTTTATTTCTAT+TGG - chr1_2:55776602-55776621 None:intergenic 20.0%
! GATAGTCATAATGATTCAAA+AGG + chr1_2:55770979-55770998 Msa0078340:CDS 25.0%
!!! AGAAAAGGATAGTTTTAATG+CGG + chr1_2:55771014-55771033 Msa0078340:CDS 25.0%
! AAGAATCAGAAAAATACCAT+AGG + chr1_2:55771061-55771080 Msa0078340:CDS 25.0%
! AGAATCAGAAAAATACCATA+GGG + chr1_2:55771062-55771081 Msa0078340:CDS 25.0%
! AGAGAAAGATAGAAAAAGAA+AGG + chr1_2:55771269-55771288 Msa0078340:CDS 25.0%
! CAATATACAAGTTAGCAATA+CGG + chr1_2:55771347-55771366 Msa0078340:CDS 25.0%
! AATATACAAGTTAGCAATAC+GGG + chr1_2:55771348-55771367 Msa0078340:CDS 25.0%
! TAAAGACAAGAGAAAAGAAA+GGG + chr1_2:55771683-55771702 Msa0078340:CDS 25.0%
! TTGAAGCTTCATAATTACAT+TGG + chr1_2:55772042-55772061 Msa0078340:intron 25.0%
! TACTAGAATGAATATAACGA+AGG - chr1_2:55772130-55772149 None:intergenic 25.0%
!! TATATAAGTTCTGGTATTTC+AGG + chr1_2:55772344-55772363 Msa0078340:CDS 25.0%
! TAAGAAAAATGAAGCTTACT+TGG - chr1_2:55772547-55772566 None:intergenic 25.0%
!! GCATTCCTTTTAATACTTAA+AGG + chr1_2:55773012-55773031 Msa0078340:intron 25.0%
!!! AACTCTAAAACTAATAATCC+GGG + chr1_2:55773175-55773194 Msa0078340:intron 25.0%
! GAAGATTCAGATAAATCAAA+AGG - chr1_2:55773290-55773309 None:intergenic 25.0%
! TGTAAGATATAAGTATAGGA+TGG - chr1_2:55773492-55773511 None:intergenic 25.0%
! ATGCTGTAAGATATAAGTAT+AGG - chr1_2:55773496-55773515 None:intergenic 25.0%
! GCTTAGTGATTACTATTATA+AGG + chr1_2:55773547-55773566 Msa0078340:intron 25.0%
! TGATTTCTATGCAAACTTAA+TGG - chr1_2:55773607-55773626 None:intergenic 25.0%
!! TTGAACTTGTTCATAATGTT+AGG + chr1_2:55773720-55773739 Msa0078340:intron 25.0%
! TATGCTATTATGAAAATCTG+AGG + chr1_2:55773784-55773803 Msa0078340:intron 25.0%
! AGAGTTACATTATTGTATTC+AGG + chr1_2:55774015-55774034 Msa0078340:intron 25.0%
!! ATATTTACTTGCCTTTTAAG+TGG + chr1_2:55774316-55774335 Msa0078340:intron 25.0%
!! ACTGAGAGTATATTTAGAAT+CGG + chr1_2:55774351-55774370 Msa0078340:intron 25.0%
! ATTGTGAAGGTAATATCAAA+AGG + chr1_2:55774544-55774563 Msa0078340:intron 25.0%
! CAAACAGTTAGATATTAAGT+TGG - chr1_2:55774595-55774614 None:intergenic 25.0%
!!! GTATTTACTGTCTTATTTTG+CGG + chr1_2:55775191-55775210 Msa0078340:intron 25.0%
! CATCTGTTATCTAATACTAT+AGG - chr1_2:55775454-55775473 None:intergenic 25.0%
! TTCAACAAAATAACAATCAG+TGG - chr1_2:55775776-55775795 None:intergenic 25.0%
! TACTCATTTGAAACTGAAGA+CGG - chr1_2:55770634-55770653 None:intergenic 30.0%
TATGTCTTATGATATAGGTC+AGG + chr1_2:55770657-55770676 Msa0078340:CDS 30.0%
!! CAGAATATATTTTTGCCCTA+TGG - chr1_2:55771080-55771099 None:intergenic 30.0%
AAAATATATTCTGATCCTCC+TGG + chr1_2:55771087-55771106 Msa0078340:CDS 30.0%
! GAGAACAAAATTGATTCCAA+AGG + chr1_2:55771231-55771250 Msa0078340:CDS 30.0%
AGCAAGATAAAGATGTTGAA+AGG + chr1_2:55771454-55771473 Msa0078340:CDS 30.0%
AAGATAAAGATGTTGAAAGG+TGG + chr1_2:55771457-55771476 Msa0078340:CDS 30.0%
AGATAAAGATGTTGAAAGGT+GGG + chr1_2:55771458-55771477 Msa0078340:CDS 30.0%
! GCTATTTGAAACATCTTTCT+CGG - chr1_2:55771571-55771590 None:intergenic 30.0%
CTAAAGACAAGAGAAAAGAA+AGG + chr1_2:55771682-55771701 Msa0078340:CDS 30.0%
AGTGAAGTCTATAACTATAG+TGG + chr1_2:55771807-55771826 Msa0078340:CDS 30.0%
TAGCAAACAATGAAACATGA+AGG - chr1_2:55771942-55771961 None:intergenic 30.0%
TTCATTCTAGTAACTATAGC+TGG + chr1_2:55772138-55772157 Msa0078340:intron 30.0%
!! ATGCTATCATTTTGTTTCAG+TGG + chr1_2:55772186-55772205 Msa0078340:CDS 30.0%
ATTGGAAAAAGCAAAGGAAA+AGG - chr1_2:55772325-55772344 None:intergenic 30.0%
ATTTGTAGCAGTAACATACT+CGG - chr1_2:55772522-55772541 None:intergenic 30.0%
ACAATCAAAGGCTCAATTAA+AGG - chr1_2:55772875-55772894 None:intergenic 30.0%
ATTGAGCCTTTGATTGTAAT+TGG + chr1_2:55772878-55772897 Msa0078340:intron 30.0%
CAAGGCCTTTAAGTATTAAA+AGG - chr1_2:55773020-55773039 None:intergenic 30.0%
! ATTGCTTCCTTTGTTTATGA+AGG + chr1_2:55773125-55773144 Msa0078340:intron 30.0%
TTACTGTCCTTCATAAACAA+AGG - chr1_2:55773135-55773154 None:intergenic 30.0%
! TCAGATAAATCAAAAGGTAC+CGG - chr1_2:55773284-55773303 None:intergenic 30.0%
AATTACGCAGTCTTAAATAG+AGG - chr1_2:55773332-55773351 None:intergenic 30.0%
GGTTTAAAAATAGCAAGCAA+GGG - chr1_2:55773412-55773431 None:intergenic 30.0%
TGGTTTAAAAATAGCAAGCA+AGG - chr1_2:55773413-55773432 None:intergenic 30.0%
!!! AGTTCAGACCTATAGTTTTT+TGG - chr1_2:55773433-55773452 None:intergenic 30.0%
! TATTATGAAAATCTGAGGCT+TGG + chr1_2:55773789-55773808 Msa0078340:intron 30.0%
! AGGGTGCATAAATTAGTTTA+CGG - chr1_2:55773833-55773852 None:intergenic 30.0%
TAAATCTTCATGCCAAACTA+GGG - chr1_2:55773852-55773871 None:intergenic 30.0%
ATAAATCTTCATGCCAAACT+AGG - chr1_2:55773853-55773872 None:intergenic 30.0%
! TGGTATGTCTTTTACAAAAC+TGG + chr1_2:55774096-55774115 Msa0078340:intron 30.0%
! TTTTACAAAACTGGTGCATT+AGG + chr1_2:55774105-55774124 Msa0078340:intron 30.0%
TTTACAAAACTGGTGCATTA+GGG + chr1_2:55774106-55774125 Msa0078340:intron 30.0%
! TGTATGGACATACAATCTTT+TGG - chr1_2:55774271-55774290 None:intergenic 30.0%
TAATAGTGATTATGGCTGTA+TGG - chr1_2:55774287-55774306 None:intergenic 30.0%
CTTAGTCATTACCACTTAAA+AGG - chr1_2:55774330-55774349 None:intergenic 30.0%
! GTATATTTAGAATCGGATTC+AGG + chr1_2:55774358-55774377 Msa0078340:intron 30.0%
CTGTTTGTTTATCTTCAGAA+AGG + chr1_2:55774608-55774627 Msa0078340:intron 30.0%
TTTGTTTATCTTCAGAAAGG+AGG + chr1_2:55774611-55774630 Msa0078340:intron 30.0%
!! CTGTTATGTTGTTTCATAGA+TGG + chr1_2:55774816-55774835 Msa0078340:intron 30.0%
! GTTGGTTATGTTCTATTTTC+TGG + chr1_2:55774944-55774963 Msa0078340:intron 30.0%
!! TCATTTTTCAGAATGCATTG+CGG + chr1_2:55775217-55775236 Msa0078340:intron 30.0%
AATCTAATATTGTGCTGTGT+TGG + chr1_2:55775329-55775348 Msa0078340:intron 30.0%
!! AAAGGGAGAAGTTTTGTATT+TGG + chr1_2:55775630-55775649 Msa0078340:CDS 30.0%
TAAGTTCAAAGAATTCGTGA+AGG + chr1_2:55775898-55775917 Msa0078340:intron 30.0%
TGGATATTTGCACTATGATT+AGG + chr1_2:55776289-55776308 Msa0078340:intron 30.0%
TCTTTCGCTTCTACTATTAA+GGG + chr1_2:55776455-55776474 Msa0078340:three_prime_UTR 30.0%
GACTCTTCATGAGATTTCTT+AGG - chr1_2:55770553-55770572 None:intergenic 35.0%
ATGATATAGGTCAGGATTCT+CGG + chr1_2:55770665-55770684 Msa0078340:CDS 35.0%
TGAGAAGAGGTTAGAATCAA+GGG + chr1_2:55770792-55770811 Msa0078340:CDS 35.0%
GATGTTTGGAGAAGTAAGAA+AGG + chr1_2:55770876-55770895 Msa0078340:CDS 35.0%
!! TTTTCACTTTTAGCACTCTG+AGG - chr1_2:55770904-55770923 None:intergenic 35.0%
! TCAGAGTGCTAAAAGTGAAA+AGG + chr1_2:55770903-55770922 Msa0078340:CDS 35.0%
AGGTGATACTAAGACAGAAA+AGG + chr1_2:55770999-55771018 Msa0078340:CDS 35.0%
ATTCTTTCCAATCCAAGTGA+AGG - chr1_2:55771047-55771066 None:intergenic 35.0%
TTTAGATCTATCGTCACCTT+TGG - chr1_2:55771250-55771269 None:intergenic 35.0%
AAAGAAAGGAAGTGAAGCAT+CGG + chr1_2:55771283-55771302 Msa0078340:CDS 35.0%
GTACAAGTAAGCAATACGAT+TGG + chr1_2:55771411-55771430 Msa0078340:CDS 35.0%
ACATCTTTATCTTGCTTCAG+AGG - chr1_2:55771450-55771469 None:intergenic 35.0%
AGATGTTTCAAATAGCGAGA+AGG + chr1_2:55771575-55771594 Msa0078340:CDS 35.0%
TGAACAAGAAACTGTCTTAC+CGG + chr1_2:55771626-55771645 Msa0078340:CDS 35.0%
GTGATCTTTGTATCCTCTTA+CGG - chr1_2:55771839-55771858 None:intergenic 35.0%
GTAAGAGGATACAAAGATCA+CGG + chr1_2:55771838-55771857 Msa0078340:CDS 35.0%
TAAGAGGATACAAAGATCAC+GGG + chr1_2:55771839-55771858 Msa0078340:CDS 35.0%
ACAATGAAACATGAAGGAAG+AGG - chr1_2:55771936-55771955 None:intergenic 35.0%
GCCAGCAATTGATTATCAAT+GGG - chr1_2:55772253-55772272 None:intergenic 35.0%
TGCCAGCAATTGATTATCAA+TGG - chr1_2:55772254-55772273 None:intergenic 35.0%
! TGGTATTTCAGGTAAAGTAG+AGG + chr1_2:55772355-55772374 Msa0078340:CDS 35.0%
! AATGGTGAAAGCTCTAACAA+TGG + chr1_2:55772470-55772489 Msa0078340:CDS 35.0%
! TCTCATCAATTGCGTTCTTT+TGG + chr1_2:55772590-55772609 Msa0078340:intron 35.0%
GAATGGCCAATTACAATCAA+AGG - chr1_2:55772887-55772906 None:intergenic 35.0%
!! ATTAGAGGCCTTTTCTAAAG+AGG + chr1_2:55772937-55772956 Msa0078340:intron 35.0%
! ATAAGCTGCCTCTTTAGAAA+AGG - chr1_2:55772948-55772967 None:intergenic 35.0%
ATGTTCAACAGTAAGGAACA+AGG - chr1_2:55773038-55773057 None:intergenic 35.0%
ACAGTGAATGTTCAACAGTA+AGG - chr1_2:55773045-55773064 None:intergenic 35.0%
TACTGTTGAACATTCACTGT+TGG + chr1_2:55773045-55773064 Msa0078340:intron 35.0%
!! AACTTGCTGATATCTGTGTT+TGG + chr1_2:55773080-55773099 Msa0078340:intron 35.0%
! ACTTGCTGATATCTGTGTTT+GGG + chr1_2:55773081-55773100 Msa0078340:intron 35.0%
AATAATCCGGGATGCTAATA+TGG + chr1_2:55773187-55773206 Msa0078340:intron 35.0%
TCCATATTCTGCCAATAATC+CGG + chr1_2:55773262-55773281 Msa0078340:intron 35.0%
!! ATCAAAAGGTACCGGATTAT+TGG - chr1_2:55773276-55773295 None:intergenic 35.0%
CTTAAATAGAGGTGGAACTA+TGG - chr1_2:55773321-55773340 None:intergenic 35.0%
AGGAAGACTTCAAGAATAAG+AGG - chr1_2:55773376-55773395 None:intergenic 35.0%
CTTATTCTTGAAGTCTTCCT+TGG + chr1_2:55773376-55773395 Msa0078340:intron 35.0%
CTATGCAAACTTAATGGCTA+TGG - chr1_2:55773601-55773620 None:intergenic 35.0%
AGATTTGACTGACACTAAGA+TGG - chr1_2:55773688-55773707 None:intergenic 35.0%
ATCTTAGTGTCAGTCAAATC+TGG + chr1_2:55773687-55773706 Msa0078340:intron 35.0%
TTGTTCATAATGTTAGGCGA+TGG + chr1_2:55773726-55773745 Msa0078340:intron 35.0%
! GTGCATAAATTAGTTTACGG+TGG - chr1_2:55773830-55773849 None:intergenic 35.0%
CTAATTTATGCACCCTAGTT+TGG + chr1_2:55773837-55773856 Msa0078340:intron 35.0%
CATTATTGTATTCAGGTCAG+AGG + chr1_2:55774022-55774041 Msa0078340:intron 35.0%
! TAGGGTGTTCTTACATATAC+TGG + chr1_2:55774124-55774143 Msa0078340:intron 35.0%
! ATGGACATACAATCTTTTGG+AGG - chr1_2:55774268-55774287 None:intergenic 35.0%
! CAATAGTTGATGTATGTGTG+AGG - chr1_2:55774661-55774680 None:intergenic 35.0%
! TTATTGAGAAGCACAAATGC+AGG - chr1_2:55774854-55774873 None:intergenic 35.0%
TTCTATTTGGACTGTTCAGT+TGG + chr1_2:55774926-55774945 Msa0078340:intron 35.0%
! TTGTGCTTTGTTATGCTTTC+AGG + chr1_2:55774976-55774995 Msa0078340:intron 35.0%
AGACAGTAAATACTAAAGGC+CGG - chr1_2:55775184-55775203 None:intergenic 35.0%
CAACATAAACTACCATACCA+AGG - chr1_2:55775294-55775313 None:intergenic 35.0%
CTTGGTATGGTAGTTTATGT+TGG + chr1_2:55775292-55775311 Msa0078340:intron 35.0%
! TATAAGCATTGTAGCAGACA+AGG + chr1_2:55775570-55775589 Msa0078340:CDS 35.0%
! ATAAGCATTGTAGCAGACAA+GGG + chr1_2:55775571-55775590 Msa0078340:CDS 35.0%
ACATCTGCTCGATTGAAAAA+GGG + chr1_2:55775613-55775632 Msa0078340:CDS 35.0%
! TTTTCACCATTTGCAGAATG+TGG - chr1_2:55776081-55776100 None:intergenic 35.0%
GCATCAATCATAACATGATC+AGG - chr1_2:55776111-55776130 None:intergenic 35.0%
ATGTTATGATTGATGCGTTC+CGG + chr1_2:55776115-55776134 Msa0078340:CDS 35.0%
TTTGCACTATGATTAGGTGT+TGG + chr1_2:55776295-55776314 Msa0078340:intron 35.0%
GATATACAATGGTCTCAAAC+TGG + chr1_2:55776338-55776357 Msa0078340:CDS 35.0%
AAAGGAATATACCCTTGCAA+GGG + chr1_2:55776376-55776395 Msa0078340:CDS 35.0%
GTCTTTCGCTTCTACTATTA+AGG + chr1_2:55776454-55776473 Msa0078340:three_prime_UTR 35.0%
TTCTACTATTAAGGGAGTGA+TGG + chr1_2:55776463-55776482 Msa0078340:three_prime_UTR 35.0%
TGATATAGGTCAGGATTCTC+GGG + chr1_2:55770666-55770685 Msa0078340:CDS 40.0%
CTCCTCTTCATTCAGTGTAT+CGG + chr1_2:55770722-55770741 Msa0078340:CDS 40.0%
ATCCGATACACTGAATGAAG+AGG - chr1_2:55770727-55770746 None:intergenic 40.0%
TGAGGATCACTAGAAGATGA+CGG - chr1_2:55770751-55770770 None:intergenic 40.0%
CTTGATTCTAACCTCTTCTC+AGG - chr1_2:55770793-55770812 None:intergenic 40.0%
CTGAGAAGAGGTTAGAATCA+AGG + chr1_2:55770791-55770810 Msa0078340:CDS 40.0%
GTTAGAATCAAGGGAATCCA+AGG + chr1_2:55770801-55770820 Msa0078340:CDS 40.0%
CCAAGGATAGTAGAGATATC+CGG + chr1_2:55770818-55770837 Msa0078340:CDS 40.0%
TCGTATCACGATTCTCAAAC+CGG - chr1_2:55770840-55770859 None:intergenic 40.0%
TGATACGAAGACTGAGAAGA+AGG + chr1_2:55770852-55770871 Msa0078340:CDS 40.0%
ACTGAGAAGAAGGAGATGTT+TGG + chr1_2:55770862-55770881 Msa0078340:CDS 40.0%
GATGCACATGTTGAAGTTAG+AGG + chr1_2:55770925-55770944 Msa0078340:CDS 40.0%
AGTTAGAGGAGATGACAACA+AGG + chr1_2:55770939-55770958 Msa0078340:CDS 40.0%
ACAAGGATGGTAGACATGAT+CGG + chr1_2:55770956-55770975 Msa0078340:CDS 40.0%
!!! GATAGTTTTAATGCGGCTAG+CGG + chr1_2:55771021-55771040 Msa0078340:CDS 40.0%
TGTGTATTCCCACGTAACAT+GGG - chr1_2:55771132-55771151 None:intergenic 40.0%
TTGTGTATTCCCACGTAACA+TGG - chr1_2:55771133-55771152 None:intergenic 40.0%
ATGTTACGTGGGAATACACA+AGG + chr1_2:55771132-55771151 Msa0078340:CDS 40.0%
GAATACACAAGGTTCAGTTG+AGG + chr1_2:55771143-55771162 Msa0078340:CDS 40.0%
! AAGAAAGGAAGTGAAGCATC+GGG + chr1_2:55771284-55771303 Msa0078340:CDS 40.0%
GTAAGCAATACGATTGGTGA+TGG + chr1_2:55771417-55771436 Msa0078340:CDS 40.0%
AGGAAAAGGATCAGATGAAG+AGG + chr1_2:55771529-55771548 Msa0078340:CDS 40.0%
GGAAAAGGATCAGATGAAGA+GGG + chr1_2:55771530-55771549 Msa0078340:CDS 40.0%
GGTAAGACAGTTTCTTGTTC+AGG - chr1_2:55771627-55771646 None:intergenic 40.0%
! TCTTTTTGCTTCTTCTGCTC+CGG - chr1_2:55771648-55771667 None:intergenic 40.0%
! GAAAGGGAAGCTGATTTAGT+AGG + chr1_2:55771699-55771718 Msa0078340:CDS 40.0%
! AAGCTGATTTAGTAGGAGAC+AGG + chr1_2:55771706-55771725 Msa0078340:CDS 40.0%
TTTGACAAGGAATCAGACGA+TGG + chr1_2:55771750-55771769 Msa0078340:CDS 40.0%
AAGAGGATACAAAGATCACG+GGG + chr1_2:55771840-55771859 Msa0078340:CDS 40.0%
! AAAGTACCCTTCGTTGTCTT+GGG - chr1_2:55771910-55771929 None:intergenic 40.0%
TAGCTGGACATATATGTTGC+AGG + chr1_2:55772154-55772173 Msa0078340:intron 40.0%
CATATATGTTGCAGGTCTCA+AGG + chr1_2:55772162-55772181 Msa0078340:intron 40.0%
TTGTTTCAGTGGCTTCATGA+AGG + chr1_2:55772197-55772216 Msa0078340:CDS 40.0%
! GTGCCGGCAGAAATTATTAT+TGG + chr1_2:55772227-55772246 Msa0078340:CDS 40.0%
GGGCCAATAATAATTTCTGC+CGG - chr1_2:55772233-55772252 None:intergenic 40.0%
! GCCCATTGATAATCAATTGC+TGG + chr1_2:55772249-55772268 Msa0078340:CDS 40.0%
TGCAAGAGCTGATAAAGTTG+TGG + chr1_2:55772411-55772430 Msa0078340:CDS 40.0%
AGAGCTGATAAAGTTGTGGA+CGG + chr1_2:55772415-55772434 Msa0078340:CDS 40.0%
ATATCCGAATTTCCAGAGTG+GGG - chr1_2:55772496-55772515 None:intergenic 40.0%
GATATCCGAATTTCCAGAGT+GGG - chr1_2:55772497-55772516 None:intergenic 40.0%
! CATCAATTGCGTTCTTTTGG+TGG + chr1_2:55772593-55772612 Msa0078340:intron 40.0%
GCAAGCAAAAGATGAAGCAA+AGG - chr1_2:55772739-55772758 None:intergenic 40.0%
CCATATCCATATTAGCATCC+CGG - chr1_2:55773196-55773215 None:intergenic 40.0%
ACCGGATTATTGGCAGAATA+TGG - chr1_2:55773266-55773285 None:intergenic 40.0%
TACGCAGTCTTAAATAGAGG+TGG - chr1_2:55773329-55773348 None:intergenic 40.0%
GCAAGGGACTTAAATTTCCA+AGG - chr1_2:55773396-55773415 None:intergenic 40.0%
! TTGGACTAGATTGACTAGTC+TGG + chr1_2:55773642-55773661 Msa0078340:intron 40.0%
TATTGTATTCAGGTCAGAGG+CGG + chr1_2:55774025-55774044 Msa0078340:intron 40.0%
AGACATACCAGCAACAAGAT+CGG - chr1_2:55774086-55774105 None:intergenic 40.0%
AAGAATTACGCGCAACCATT+CGG + chr1_2:55774236-55774255 Msa0078340:CDS 40.0%
GCTGCAGTTATCGAATTGAA+CGG + chr1_2:55774515-55774534 Msa0078340:CDS 40.0%
GTTTATCTTCAGAAAGGAGG+TGG + chr1_2:55774614-55774633 Msa0078340:intron 40.0%
ATAGATGCTGAAACAAACCG+AGG - chr1_2:55774738-55774757 None:intergenic 40.0%
! TGCTTTGTTATGCTTTCAGG+TGG + chr1_2:55774979-55774998 Msa0078340:intron 40.0%
GACAGTAAATACTAAAGGCC+GGG - chr1_2:55775183-55775202 None:intergenic 40.0%
ACAATCTTTGCAATGAGCCT+TGG + chr1_2:55775274-55775293 Msa0078340:CDS 40.0%
AATCGAGCAGATGTGTATTG+TGG - chr1_2:55775607-55775626 None:intergenic 40.0%
CACATCTGCTCGATTGAAAA+AGG + chr1_2:55775612-55775631 Msa0078340:CDS 40.0%
!!! TACGACCAGGTATTTTGACA+CGG + chr1_2:55775660-55775679 Msa0078340:intron 40.0%
AACTTCCGTGTCAAAATACC+TGG - chr1_2:55775668-55775687 None:intergenic 40.0%
!!! AGATACGAGCTTTGTTTTGC+TGG + chr1_2:55775982-55776001 Msa0078340:intron 40.0%
!! TTGTTTTGCTGGAGAGAAGT+TGG + chr1_2:55775993-55776012 Msa0078340:CDS 40.0%
ATTGTGCGCATCAATTTCTG+TGG - chr1_2:55776165-55776184 None:intergenic 40.0%
CAGAAATTGATGCGCACAAT+TGG + chr1_2:55776165-55776184 Msa0078340:CDS 40.0%
AATACCTCGACATGTTCAAG+AGG - chr1_2:55776201-55776220 None:intergenic 40.0%
! TGGACTGGGAAGATATACAA+TGG + chr1_2:55776327-55776346 Msa0078340:CDS 40.0%
AATGGTCTCAAACTGGTGTT+TGG + chr1_2:55776345-55776364 Msa0078340:CDS 40.0%
GAAAGGAATATACCCTTGCA+AGG + chr1_2:55776375-55776394 Msa0078340:CDS 40.0%
TACTATTAAGGGAGTGATGG+TGG + chr1_2:55776466-55776485 Msa0078340:three_prime_UTR 40.0%
ACTATTAAGGGAGTGATGGT+GGG + chr1_2:55776467-55776486 Msa0078340:three_prime_UTR 40.0%
CCGGATATCTCTACTATCCT+TGG - chr1_2:55770821-55770840 None:intergenic 45.0%
AGAGGAGATGACAACAAGGA+TGG + chr1_2:55770943-55770962 Msa0078340:CDS 45.0%
CAAGGATGGTAGACATGATC+GGG + chr1_2:55770957-55770976 Msa0078340:CDS 45.0%
ACACAAGGTTCAGTTGAGGT+TGG + chr1_2:55771147-55771166 Msa0078340:CDS 45.0%
AGGTTCAGTTGAGGTTGGAA+AGG + chr1_2:55771152-55771171 Msa0078340:CDS 45.0%
AGAGTTCATCAGCAGAACCA+AGG + chr1_2:55771175-55771194 Msa0078340:CDS 45.0%
GAGTTCATCAGCAGAACCAA+GGG + chr1_2:55771176-55771195 Msa0078340:CDS 45.0%
TTAGCAATACGGGTAGTGAC+TGG + chr1_2:55771358-55771377 Msa0078340:CDS 45.0%
AAGATGTTGAAAGGTGGGAG+AGG + chr1_2:55771463-55771482 Msa0078340:CDS 45.0%
AGATGTTGAAAGGTGGGAGA+GGG + chr1_2:55771464-55771483 Msa0078340:CDS 45.0%
! GAAGGAACCTGTTGATGGAT+CGG + chr1_2:55771593-55771612 Msa0078340:CDS 45.0%
AGAGGATACAAAGATCACGG+GGG + chr1_2:55771841-55771860 Msa0078340:CDS 45.0%
!! GAAAGTACCCTTCGTTGTCT+TGG - chr1_2:55771911-55771930 None:intergenic 45.0%
CGATATCCGAATTTCCAGAG+TGG - chr1_2:55772498-55772517 None:intergenic 45.0%
CCGGGATGCTAATATGGATA+TGG + chr1_2:55773193-55773212 Msa0078340:intron 45.0%
TTAGTTTACGGTGGTAGCAC+TGG - chr1_2:55773821-55773840 None:intergenic 45.0%
TATGACTCCGATCTTGTTGC+TGG + chr1_2:55774076-55774095 Msa0078340:CDS 45.0%
TGCACAGTTCTCATGCATAC+AGG + chr1_2:55774172-55774191 Msa0078340:intron 45.0%
AATTCTTGTATGGCTGCAGG+AGG - chr1_2:55774223-55774242 None:intergenic 45.0%
CGTAATTCTTGTATGGCTGC+AGG - chr1_2:55774226-55774245 None:intergenic 45.0%
GGTTGCGCGTAATTCTTGTA+TGG - chr1_2:55774233-55774252 None:intergenic 45.0%
AGAATTACGCGCAACCATTC+GGG + chr1_2:55774237-55774256 Msa0078340:CDS 45.0%
!! AATTTTAGCACCCCAAGCAC+GGG - chr1_2:55774494-55774513 None:intergenic 45.0%
!! CAATTTTAGCACCCCAAGCA+CGG - chr1_2:55774495-55774514 None:intergenic 45.0%
!! TGAACGGTGTTGCATTGTGA+AGG + chr1_2:55774531-55774550 Msa0078340:CDS 45.0%
GTTGATGTATGTGTGAGGCA+AGG - chr1_2:55774656-55774675 None:intergenic 45.0%
TACCATGCTTCAACACGTGT+AGG - chr1_2:55775133-55775152 None:intergenic 45.0%
CTTTGCAATGAGCCTTGGTA+TGG + chr1_2:55775279-55775298 Msa0078340:intron 45.0%
CAATATTCGGCTATGCAACG+TGG + chr1_2:55775406-55775425 Msa0078340:intron 45.0%
ATTTGGAGACACATACGACC+AGG + chr1_2:55775647-55775666 Msa0078340:CDS 45.0%
TCAGTTAAAAGAACGCCAGG+AGG - chr1_2:55775949-55775968 None:intergenic 45.0%
GACTCAGTTAAAAGAACGCC+AGG - chr1_2:55775952-55775971 None:intergenic 45.0%
CACCATCCACATTCTGCAAA+TGG + chr1_2:55776072-55776091 Msa0078340:CDS 45.0%
CACCATTTGCAGAATGTGGA+TGG - chr1_2:55776077-55776096 None:intergenic 45.0%
TTATGATTGATGCGTTCCGG+TGG + chr1_2:55776118-55776137 Msa0078340:CDS 45.0%
!! GCACTATGATTAGGTGTTGG+AGG + chr1_2:55776298-55776317 Msa0078340:intron 45.0%
!! TTAGGTGTTGGAGGAGAACT+TGG + chr1_2:55776307-55776326 Msa0078340:intron 45.0%
CAAACTGGTGTTTGGATTGC+AGG + chr1_2:55776353-55776372 Msa0078340:CDS 45.0%
TGGTGTTTGGATTGCAGGAA+AGG + chr1_2:55776358-55776377 Msa0078340:CDS 45.0%
CAAGAAATGCACCCTTGCAA+GGG - chr1_2:55776390-55776409 None:intergenic 45.0%
ACAAGAAATGCACCCTTGCA+AGG - chr1_2:55776391-55776410 None:intergenic 45.0%
TATGCACCTGCGTCTTCATG+CGG - chr1_2:55770598-55770617 None:intergenic 50.0%
CGCAGGTGCATATCCGAAAT+TGG + chr1_2:55770606-55770625 Msa0078340:CDS 50.0%
ACTGAAGACGGCGCCAATTT+CGG - chr1_2:55770622-55770641 None:intergenic 50.0%
TATAGGTCAGGATTCTCGGG+TGG + chr1_2:55770669-55770688 Msa0078340:CDS 50.0%
GATCTTCTCTCCACATCACG+AGG - chr1_2:55770703-55770722 None:intergenic 50.0%
ATCCTGTTGGTCCTGAGAAG+AGG + chr1_2:55770779-55770798 Msa0078340:CDS 50.0%
AACCTCTTCTCAGGACCAAC+AGG - chr1_2:55770784-55770803 None:intergenic 50.0%
TCAGCAGAACCAAGGGAGTA+TGG + chr1_2:55771183-55771202 Msa0078340:CDS 50.0%
ATCAGATGAAGAGGGAGTCG+TGG + chr1_2:55771538-55771557 Msa0078340:CDS 50.0%
ATGAAGAGGGAGTCGTGGAA+TGG + chr1_2:55771543-55771562 Msa0078340:CDS 50.0%
AGCGAGAAGGAACCTGTTGA+TGG + chr1_2:55771588-55771607 Msa0078340:CDS 50.0%
! ACCTGTTGATGGATCGGCTA+AGG + chr1_2:55771599-55771618 Msa0078340:CDS 50.0%
ACCTTAGCCGATCCATCAAC+AGG - chr1_2:55771603-55771622 None:intergenic 50.0%
ACAGGTCTGATAAGCGCAGT+AGG + chr1_2:55771724-55771743 Msa0078340:CDS 50.0%
CAGGTCTGATAAGCGCAGTA+GGG + chr1_2:55771725-55771744 Msa0078340:CDS 50.0%
AGGTCTGATAAGCGCAGTAG+GGG + chr1_2:55771726-55771745 Msa0078340:CDS 50.0%
TCAGACGATGGATGTGCTGA+TGG + chr1_2:55771762-55771781 Msa0078340:CDS 50.0%
! CAGACGATGGATGTGCTGAT+GGG + chr1_2:55771763-55771782 Msa0078340:CDS 50.0%
! ATGGATGTGCTGATGGGCAA+GGG + chr1_2:55771769-55771788 Msa0078340:CDS 50.0%
TGGGCAAGGGGCAATAGAAA+AGG + chr1_2:55771782-55771801 Msa0078340:CDS 50.0%
ATAGTGGTCAGCACCGTAAG+AGG + chr1_2:55771823-55771842 Msa0078340:CDS 50.0%
GTGGCTTCATGAAGGAACAC+TGG + chr1_2:55772205-55772224 Msa0078340:CDS 50.0%
TCATGAAGGAACACTGGTGC+CGG + chr1_2:55772211-55772230 Msa0078340:CDS 50.0%
TTGCTGGCACTGTTTAGCTG+TGG + chr1_2:55772265-55772284 Msa0078340:CDS 50.0%
GGCACTGTTTAGCTGTGGAA+TGG + chr1_2:55772270-55772289 Msa0078340:CDS 50.0%
! ATGGCCCCACTCTGGAAATT+CGG + chr1_2:55772489-55772508 Msa0078340:CDS 50.0%
CTGGTCCAAGTAACTGCAGT+CGG + chr1_2:55773661-55773680 Msa0078340:intron 50.0%
TGGTCCAAGTAACTGCAGTC+GGG + chr1_2:55773662-55773681 Msa0078340:intron 50.0%
TGTTAGGCGATGGAGCTGAA+TGG + chr1_2:55773736-55773755 Msa0078340:intron 50.0%
GTTAGGCGATGGAGCTGAAT+GGG + chr1_2:55773737-55773756 Msa0078340:intron 50.0%
TTAGGCGATGGAGCTGAATG+GGG + chr1_2:55773738-55773757 Msa0078340:intron 50.0%
!! TTTTGGAGGTAGCACCCGAA+TGG - chr1_2:55774254-55774273 None:intergenic 50.0%
ACAATGTACGTTCCCGTGCT+TGG + chr1_2:55774479-55774498 Msa0078340:CDS 50.0%
CAATGTACGTTCCCGTGCTT+GGG + chr1_2:55774480-55774499 Msa0078340:CDS 50.0%
AATGTACGTTCCCGTGCTTG+GGG + chr1_2:55774481-55774500 Msa0078340:CDS 50.0%
! CGTGCTTGGGGTGCTAAAAT+TGG + chr1_2:55774493-55774512 Msa0078340:CDS 50.0%
GTCCTACACGTGTTGAAGCA+TGG + chr1_2:55775128-55775147 Msa0078340:intron 50.0%
GTCACGTAGAAAAAGCCTCC+TGG + chr1_2:55775931-55775950 Msa0078340:intron 50.0%
! TGCTGGAGAGAAGTTGGTCA+AGG + chr1_2:55775999-55776018 Msa0078340:CDS 50.0%
GCTTCTTACAACGAGACCAC+CGG - chr1_2:55776137-55776156 None:intergenic 50.0%
CGCATCAATTTCTGTGGCAG+AGG - chr1_2:55776159-55776178 None:intergenic 50.0%
CGACATGTTCAAGAGGCAGA+GGG - chr1_2:55776194-55776213 None:intergenic 50.0%
TCGACATGTTCAAGAGGCAG+AGG - chr1_2:55776195-55776214 None:intergenic 50.0%
TCTGCCTCTTGAACATGTCG+AGG + chr1_2:55776194-55776213 Msa0078340:CDS 50.0%
TGTTGGAGGAGAACTTGGAC+TGG + chr1_2:55776312-55776331 Msa0078340:CDS 50.0%
GTTGGAGGAGAACTTGGACT+GGG + chr1_2:55776313-55776332 Msa0078340:CDS 50.0%
AAACACCCGCATGAAGACGC+AGG + chr1_2:55770589-55770608 Msa0078340:CDS 55.0%
ATGCACCTGCGTCTTCATGC+GGG - chr1_2:55770597-55770616 None:intergenic 55.0%
!! GGTAAAAGCGCCTCGTGATG+TGG + chr1_2:55770690-55770709 Msa0078340:CDS 55.0%
CTCAGGACCAACAGGATGCT+CGG - chr1_2:55770776-55770795 None:intergenic 55.0%
CTAGCGGCCTTCACTTGGAT+TGG + chr1_2:55771037-55771056 Msa0078340:CDS 55.0%
AACCCTGGCCCATGTTACGT+GGG + chr1_2:55771121-55771140 Msa0078340:CDS 55.0%
TTCCCACGTAACATGGGCCA+GGG - chr1_2:55771126-55771145 None:intergenic 55.0%
ATTCCCACGTAACATGGGCC+AGG - chr1_2:55771127-55771146 None:intergenic 55.0%
! GCAGAACCAAGGGAGTATGG+CGG + chr1_2:55771186-55771205 Msa0078340:CDS 55.0%
! CAGAACCAAGGGAGTATGGC+GGG + chr1_2:55771187-55771206 Msa0078340:CDS 55.0%
! AGAACCAAGGGAGTATGGCG+GGG + chr1_2:55771188-55771207 Msa0078340:CDS 55.0%
GGGAAGCTCGTGAAGCTGTT+GGG + chr1_2:55771208-55771227 Msa0078340:CDS 55.0%
GGAAGCTCGTGAAGCTGTTG+GGG + chr1_2:55771209-55771228 Msa0078340:CDS 55.0%
!! AGGAAGTGAAGCATCGGGAC+TGG + chr1_2:55771289-55771308 Msa0078340:CDS 55.0%
!! GGAAGTGAAGCATCGGGACT+GGG + chr1_2:55771290-55771309 Msa0078340:CDS 55.0%
!! GAAGTGAAGCATCGGGACTG+GGG + chr1_2:55771291-55771310 Msa0078340:CDS 55.0%
!! AAGTGAAGCATCGGGACTGG+GGG + chr1_2:55771292-55771311 Msa0078340:CDS 55.0%
! GATGGATGTGCTGATGGGCA+AGG + chr1_2:55771768-55771787 Msa0078340:CDS 55.0%
! TGGATGTGCTGATGGGCAAG+GGG + chr1_2:55771770-55771789 Msa0078340:CDS 55.0%
GGAGTCCTCAGGTGCCTAAT+CGG + chr1_2:55771862-55771881 Msa0078340:CDS 55.0%
GAGTCCTCAGGTGCCTAATC+GGG + chr1_2:55771863-55771882 Msa0078340:CDS 55.0%
CTGAAACGAGGCTCCCGATT+AGG - chr1_2:55771879-55771898 None:intergenic 55.0%
CTAATCGGGAGCCTCGTTTC+AGG + chr1_2:55771877-55771896 Msa0078340:CDS 55.0%
ACCCTTCGTTGTCTTGGGTG+CGG - chr1_2:55771905-55771924 None:intergenic 55.0%
CTCTAACAATGGCCCCACTC+TGG + chr1_2:55772481-55772500 Msa0078340:CDS 55.0%
ATGGCCCGACTGCAGTTACT+TGG - chr1_2:55773669-55773688 None:intergenic 55.0%
ACACATCAGTCCCCCAAAGC+TGG - chr1_2:55774051-55774070 None:intergenic 55.0%
CAGGAGGTGGAGATGCTGTT+GGG - chr1_2:55774207-55774226 None:intergenic 55.0%
TCTTGTATGGCTGCAGGAGG+TGG - chr1_2:55774220-55774239 None:intergenic 55.0%
TGGAGCGGACAATGACTACC+AGG + chr1_2:55774705-55774724 Msa0078340:CDS 55.0%
GGAGCGGACAATGACTACCA+GGG + chr1_2:55774706-55774725 Msa0078340:CDS 55.0%
GCTGAAACAAACCGAGGCTG+CGG - chr1_2:55774732-55774751 None:intergenic 55.0%
CTAGCCTAGCTAGAACGACC+CGG + chr1_2:55775162-55775181 Msa0078340:intron 55.0%
TCGGCTATGCAACGTGGATC+AGG + chr1_2:55775412-55775431 Msa0078340:intron 55.0%
CAAGGCTACACCAGCAACTC+AGG + chr1_2:55776017-55776036 Msa0078340:CDS 55.0%
GGTTCATTCGCCTGAGTTGC+TGG - chr1_2:55776030-55776049 None:intergenic 55.0%
GCAACTCAGGCGAATGAACC+AGG + chr1_2:55776030-55776049 Msa0078340:CDS 55.0%
GAATGAACCAGGCGCAGAGA+AGG + chr1_2:55776041-55776060 Msa0078340:CDS 55.0%
! TTTTGAGCCTTCTCTGCGCC+TGG - chr1_2:55776051-55776070 None:intergenic 55.0%
CCAACAGGATGCTCGGCATG+AGG - chr1_2:55770769-55770788 None:intergenic 60.0%
CCTCATGCCGAGCATCCTGT+TGG + chr1_2:55770766-55770785 Msa0078340:CDS 60.0%
TGATCCTCCTGGCGCGAGTT+TGG + chr1_2:55771098-55771117 Msa0078340:CDS 60.0%
GAACCCTGGCCCATGTTACG+TGG + chr1_2:55771120-55771139 Msa0078340:CDS 60.0%
GGGGAAGCTCGTGAAGCTGT+TGG + chr1_2:55771207-55771226 Msa0078340:CDS 60.0%
!! AGTGAAGCATCGGGACTGGG+GGG + chr1_2:55771293-55771312 Msa0078340:CDS 60.0%
! GCGCAGTAGGGGCTTTGACA+AGG + chr1_2:55771737-55771756 Msa0078340:CDS 60.0%
AAGATCACGGGGGAGTCCTC+AGG + chr1_2:55771851-55771870 Msa0078340:CDS 60.0%
TCCCGCACCCAAGACAACGA+AGG + chr1_2:55771900-55771919 Msa0078340:CDS 60.0%
CCCTTCGTTGTCTTGGGTGC+GGG - chr1_2:55771904-55771923 None:intergenic 60.0%
CCCGCACCCAAGACAACGAA+GGG + chr1_2:55771901-55771920 Msa0078340:CDS 60.0%
GCAGGAGGTGGAGATGCTGT+TGG - chr1_2:55774208-55774227 None:intergenic 60.0%
ACAGCCACGGGAGCAAGAGT+CGG - chr1_2:55774686-55774705 None:intergenic 60.0%
ATTGTCCGCTCCACAGCCAC+GGG - chr1_2:55774698-55774717 None:intergenic 60.0%
CATTGTCCGCTCCACAGCCA+CGG - chr1_2:55774699-55774718 None:intergenic 60.0%
! AAGGCCGGGTCGTTCTAGCT+AGG - chr1_2:55775169-55775188 None:intergenic 60.0%
TGCGGCTAGCGGCCTTCACT+TGG + chr1_2:55771032-55771051 Msa0078340:CDS 65.0%
GGTTCCAAACTCGCGCCAGG+AGG - chr1_2:55771105-55771124 None:intergenic 65.0%
CAGGGTTCCAAACTCGCGCC+AGG - chr1_2:55771108-55771127 None:intergenic 65.0%
! CTGGCGCGAGTTTGGAACCC+TGG + chr1_2:55771106-55771125 Msa0078340:CDS 65.0%
GCTTCCCCGCCATACTCCCT+TGG - chr1_2:55771195-55771214 None:intergenic 65.0%
GGCTCCCGATTAGGCACCTG+AGG - chr1_2:55771870-55771889 None:intergenic 65.0%
TGGGTGCGGGACCTGAAACG+AGG - chr1_2:55771891-55771910 None:intergenic 65.0%
AGGTCAGAGGCGGCCAGCTT+TGG + chr1_2:55774035-55774054 Msa0078340:intron 65.0%
GGTCAGAGGCGGCCAGCTTT+GGG + chr1_2:55774036-55774055 Msa0078340:intron 65.0%
GTCAGAGGCGGCCAGCTTTG+GGG + chr1_2:55774037-55774056 Msa0078340:CDS 65.0%
! TCAGAGGCGGCCAGCTTTGG+GGG + chr1_2:55774038-55774057 Msa0078340:CDS 65.0%
! TGAGCCGACTCTTGCTCCCG+TGG + chr1_2:55774679-55774698 Msa0078340:CDS 65.0%
GACTCTTGCTCCCGTGGCTG+TGG + chr1_2:55774685-55774704 Msa0078340:CDS 65.0%
TTGCTCCCGTGGCTGTGGAG+CGG + chr1_2:55774690-55774709 Msa0078340:CDS 65.0%
GCATCGGGACTGGGGGGAGA+AGG + chr1_2:55771299-55771318 Msa0078340:CDS 70.0%
GACTACCAGGGCCGCAGCCT+CGG + chr1_2:55774718-55774737 Msa0078340:CDS 70.0%
ACAAACCGAGGCTGCGGCCC+TGG - chr1_2:55774726-55774745 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55770538 55776622 55770538 ID=Msa0078340;Name=Msa0078340
chr1_2 mRNA 55770538 55776622 55770538 ID=Msa0078340-mRNA-1;Parent=Msa0078340;Name=Msa0078340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.88|0.8|1|0.88|0.9|10|201|892
chr1_2 exon 55770538 55771953 55770538 ID=Msa0078340-mRNA-1:exon:17357;Parent=Msa0078340-mRNA-1
chr1_2 exon 55772176 55772547 55772176 ID=Msa0078340-mRNA-1:exon:17358;Parent=Msa0078340-mRNA-1
chr1_2 exon 55774037 55774097 55774037 ID=Msa0078340-mRNA-1:exon:17359;Parent=Msa0078340-mRNA-1
chr1_2 exon 55774179 55774277 55774179 ID=Msa0078340-mRNA-1:exon:17360;Parent=Msa0078340-mRNA-1
chr1_2 exon 55774458 55774552 55774458 ID=Msa0078340-mRNA-1:exon:17361;Parent=Msa0078340-mRNA-1
chr1_2 exon 55774626 55774739 55774626 ID=Msa0078340-mRNA-1:exon:17362;Parent=Msa0078340-mRNA-1
chr1_2 exon 55775228 55775295 55775228 ID=Msa0078340-mRNA-1:exon:17363;Parent=Msa0078340-mRNA-1
chr1_2 exon 55775558 55775668 55775558 ID=Msa0078340-mRNA-1:exon:17364;Parent=Msa0078340-mRNA-1
chr1_2 exon 55775984 55776215 55775984 ID=Msa0078340-mRNA-1:exon:17365;Parent=Msa0078340-mRNA-1
chr1_2 exon 55776311 55776622 55776311 ID=Msa0078340-mRNA-1:exon:17366;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55770538 55771953 55770538 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55772176 55772547 55772176 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55774037 55774097 55774037 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55774179 55774277 55774179 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55774458 55774552 55774458 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55774626 55774739 55774626 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55775228 55775295 55775228 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55775558 55775668 55775558 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55775984 55776215 55775984 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 CDS 55776311 55776421 55776311 ID=Msa0078340-mRNA-1:cds;Parent=Msa0078340-mRNA-1
chr1_2 three_prime_UTR 55776422 55776622 55776422 ID=Msa0078340-mRNA-1:three_prime_utr;Parent=Msa0078340-mRNA-1
Gene Sequence

>Msa0078340

ATGAGTGGTACACCTAAGAAATCTCATGAAGAGTCTGTTCATCTGTCTTCAAAACACCCGCATGAAGACGCAGGTGCATATCCGAAATTGGCGCCGTCTTCAGTTTCAAATGAGTATCATATGTCTTATGATATAGGTCAGGATTCTCGGGTGGTAAAAGCGCCTCGTGATGTGGAGAGAAGATCTCCTCTTCATTCAGTGTATCGGATGCCGTCATCTTCTAGTGATCCTCATGCCGAGCATCCTGTTGGTCCTGAGAAGAGGTTAGAATCAAGGGAATCCAAGGATAGTAGAGATATCCGGTTTGAGAATCGTGATACGAAGACTGAGAAGAAGGAGATGTTTGGAGAAGTAAGAAAGGATCCTCAGAGTGCTAAAAGTGAAAAGGATGCACATGTTGAAGTTAGAGGAGATGACAACAAGGATGGTAGACATGATCGGGATAGTCATAATGATTCAAAAGGTGATACTAAGACAGAAAAGGATAGTTTTAATGCGGCTAGCGGCCTTCACTTGGATTGGAAAGAATCAGAAAAATACCATAGGGCAAAAATATATTCTGATCCTCCTGGCGCGAGTTTGGAACCCTGGCCCATGTTACGTGGGAATACACAAGGTTCAGTTGAGGTTGGAAAGGAGAGTTCATCAGCAGAACCAAGGGAGTATGGCGGGGAAGCTCGTGAAGCTGTTGGGGAGAACAAAATTGATTCCAAAGGTGACGATAGATCTAAAGAGAAAGATAGAAAAAGAAAGGAAGTGAAGCATCGGGACTGGGGGGAGAAGGAAAAAGAAAGAAGTGATCGTAGAAACAATATACAAGTTAGCAATACGGGTAGTGACTGGAAAGAATCTGTGAATGATCGTAGAAACAATGTACAAGTAAGCAATACGATTGGTGATGGCAAAGAACCTCTGAAGCAAGATAAAGATGTTGAAAGGTGGGAGAGGGAGAAAAAAGATCTTCCCAAAGAAAAAGAAAATTTAAAAGAGAAGGAAAAGGATCAGATGAAGAGGGAGTCGTGGAATGGAGCCGAGAAAGATGTTTCAAATAGCGAGAAGGAACCTGTTGATGGATCGGCTAAGGTTCCTGAACAAGAAACTGTCTTACCGGAGCAGAAGAAGCAAAAAGATGTTGATAGAGAAGCTAAAGACAAGAGAAAAGAAAGGGAAGCTGATTTAGTAGGAGACAGGTCTGATAAGCGCAGTAGGGGCTTTGACAAGGAATCAGACGATGGATGTGCTGATGGGCAAGGGGCAATAGAAAAGGAGAGTGAAGTCTATAACTATAGTGGTCAGCACCGTAAGAGGATACAAAGATCACGGGGGAGTCCTCAGGTGCCTAATCGGGAGCCTCGTTTCAGGTCCCGCACCCAAGACAACGAAGGGTACTTTCTTCCTCTTCCTTCATGTTTCATTGTCTCAAGGTATGCTATCATTTTGTTTCAGTGGCTTCATGAAGGAACACTGGTGCCGGCAGAAATTATTATTGGCCCATTGATAATCAATTGCTGGCACTGTTTAGCTGTGGAATGGAGTAGATTAGAGCTTAATATTCTTAAGTGCCTTTTCCTTTGCTTTTTCCAATATATAAGTTCTGGTATTTCAGGTAAAGTAGAGGTTTCTTATGTTGTTTATAAAGTTGGTGAAAGCATGCAAGAGCTGATAAAGTTGTGGACGGAGTATGAATCATCTCAATCTCAAATTGAAAAAAATGGTGAAAGCTCTAACAATGGCCCCACTCTGGAAATTCGGATATCGTCCGAGTATGTTACTGCTACAAATCGCCAAGTCAGAGGCGGCCAGCTTTGGGGGACTGATGTGTACACATATGACTCCGATCTTGTTGCTGTTCTCATGCATACAGGTTACTGTCGCCCAACAGCATCTCCACCTCCTGCAGCCATACAAGAATTACGCGCAACCATTCGGGTGCTACCTCCAAAAGATTGCTATATTTCTACACTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTAAAATTGGCTGCAGTTATCGAATTGAACGGTGTTGCATTGTGAAGAAAGGAGGTGGAACTATTGATCTTGAACCTTGCCTCACACATACATCAACTATTGAGCCGACTCTTGCTCCCGTGGCTGTGGAGCGGACAATGACTACCAGGGCCGCAGCCTCGAATGCATTGCGGCAGCAAAGATATGTTCGAGAAGTCACGATTCAGTACAATCTTTGCAATGAGCCTTGGATCAAATATAGTATAAGCATTGTAGCAGACAAGGGTCTAAAAAAGCCACAATACACATCTGCTCGATTGAAAAAGGGAGAAGTTTTGTATTTGGAGACACATACGACCAGATACGAGCTTTGTTTTGCTGGAGAGAAGTTGGTCAAGGCTACACCAGCAACTCAGGCGAATGAACCAGGCGCAGAGAAGGCTCAAAATCACCATCCACATTCTGCAAATGGTGAAAAAAGTGAGCCTGATCATGTTATGATTGATGCGTTCCGGTGGTCTCGTTGTAAGAAGCCTCTGCCACAGAAATTGATGCGCACAATTGGCATCCCTCTGCCTCTTGAACATGTCGAGGTGTTGGAGGAGAACTTGGACTGGGAAGATATACAATGGTCTCAAACTGGTGTTTGGATTGCAGGAAAGGAATATACCCTTGCAAGGGTGCATTTCTTGTCAATGAATTAA
Protein sequence

>Msa0078340

MSGTPKKSHEESVHLSSKHPHEDAGAYPKLAPSSVSNEYHMSYDIGQDSRVVKAPRDVERRSPLHSVYRMPSSSSDPHAEHPVGPEKRLESRESKDSRDIRFENRDTKTEKKEMFGEVRKDPQSAKSEKDAHVEVRGDDNKDGRHDRDSHNDSKGDTKTEKDSFNAASGLHLDWKESEKYHRAKIYSDPPGASLEPWPMLRGNTQGSVEVGKESSSAEPREYGGEAREAVGENKIDSKGDDRSKEKDRKRKEVKHRDWGEKEKERSDRRNNIQVSNTGSDWKESVNDRRNNVQVSNTIGDGKEPLKQDKDVERWEREKKDLPKEKENLKEKEKDQMKRESWNGAEKDVSNSEKEPVDGSAKVPEQETVLPEQKKQKDVDREAKDKRKEREADLVGDRSDKRSRGFDKESDDGCADGQGAIEKESEVYNYSGQHRKRIQRSRGSPQVPNREPRFRSRTQDNEGYFLPLPSCFIVSRYAIILFQWLHEGTLVPAEIIIGPLIINCWHCLAVEWSRLELNILKCLFLCFFQYISSGISGKVEVSYVVYKVGESMQELIKLWTEYESSQSQIEKNGESSNNGPTLEIRISSEYVTATNRQVRGGQLWGTDVYTYDSDLVAVLMHTGYCRPTASPPPAAIQELRATIRVLPPKDCYISTLRNNVRSRAWGAKIGCSYRIERCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQRYVREVTIQYNLCNEPWIKYSISIVADKGLKKPQYTSARLKKGEVLYLETHTTRYELCFAGEKLVKATPATQANEPGAEKAQNHHPHSANGEKSEPDHVMIDAFRWSRCKKPLPQKLMRTIGIPLPLEHVEVLEENLDWEDIQWSQTGVWIAGKEYTLARVHFLSMN*