Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444490 | sp|Q8VY89|APC7_ARATH | 79.899 | 199 | 40 | 0 | 1 | 199 | 283 | 481 | 1.58e-105 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444490 | G7IPZ9 | 99.497 | 199 | 1 | 0 | 1 | 199 | 285 | 483 | 6.57e-137 | 404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626280 | Msa1444490 | 0.803040 | 4.214520e-49 | -8.615850e-47 |
| Msa0195000 | Msa1444490 | 0.856321 | 3.481446e-62 | -8.615850e-47 |
| Msa0274670 | Msa1444490 | 0.901192 | 3.435577e-78 | -8.615850e-47 |
| Msa0315490 | Msa1444490 | 0.912234 | 2.460253e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444490 | MtrunA17_Chr2g0286231 | 99.497 | 199 | 1 | 0 | 1 | 199 | 285 | 483 | 1.27e-140 | 404 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444490 | AT2G39090.2 | 79.899 | 199 | 40 | 0 | 1 | 199 | 283 | 481 | 2.04e-107 | 318 |
| Msa1444490 | AT2G39090.1 | 79.899 | 199 | 40 | 0 | 1 | 199 | 283 | 481 | 1.61e-106 | 317 |
Find 85 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATTAAGTGTGTATTATT+AGG | 0.148299 | tig0030729:-45460 | None:intergenic |
| TCTTCAACAAAATTGATTAT+TGG | 0.194580 | tig0030729:-41044 | None:intergenic |
| TTGCCGATGAATTTGTTATT+AGG | 0.211280 | tig0030729:+43068 | Msa1444490:five_prime_UTR |
| ATCACCACTCTTCTCGAAAA+TGG | 0.215246 | tig0030729:+41144 | Msa1444490:five_prime_UTR |
| GGAGCCCTCACACTTCTATT+TGG | 0.222284 | tig0030729:-43838 | None:intergenic |
| TTCTCTCCCACCAGAATTAC+TGG | 0.231176 | tig0030729:-47010 | None:intergenic |
| GTGATAGCCTCAAGTATAAA+AGG | 0.239509 | tig0030729:-43566 | None:intergenic |
| ATGAAGGTTGAAGCTATTAT+TGG | 0.261152 | tig0030729:+45827 | Msa1444490:intron |
| TTTGTTGAAGAATCACTTTC+CGG | 0.271246 | tig0030729:+41056 | Msa1444490:five_prime_UTR |
| AGGTTTGGTTCATACATATT+TGG | 0.303349 | tig0030729:+46888 | Msa1444490:intron |
| TCCATACATCATAACATATA+TGG | 0.310210 | tig0030729:+46205 | Msa1444490:exon |
| ATTGATAACTGATGTATTGC+AGG | 0.321031 | tig0030729:-42248 | None:intergenic |
| CCTTGGTATGTGCGTATATC+AGG | 0.328266 | tig0030729:-46707 | None:intergenic |
| TCCTATTCTGGCAGGTGGCT+TGG | 0.331842 | tig0030729:+45408 | Msa1444490:intron |
| CCTTGGTGCTGCACTAGCTT+TGG | 0.339345 | tig0030729:+47167 | Msa1444490:CDS |
| GTATTAAGTGTGTATTATTA+GGG | 0.342297 | tig0030729:-45459 | None:intergenic |
| TATCACCGCTTTATCAGAAA+TGG | 0.352829 | tig0030729:+43583 | Msa1444490:five_prime_UTR |
| GTATATCAGGTCTCAATTCT+TGG | 0.355867 | tig0030729:-46694 | None:intergenic |
| GATGTGCATGCCAGTAATTC+TGG | 0.359532 | tig0030729:+47000 | Msa1444490:CDS |
| TCCATATATGTTATGATGTA+TGG | 0.364309 | tig0030729:-46206 | None:intergenic |
| AGCAGACGACATACTCTGTT+TGG | 0.371372 | tig0030729:-42185 | None:intergenic |
| GCAGCTGTGTCTGCCTTTAG+AGG | 0.397555 | tig0030729:+46668 | Msa1444490:CDS |
| GGCAAATTTCGAGCTTTGCT+TGG | 0.400434 | tig0030729:-43050 | None:intergenic |
| AGCATTATCGTATGCTGAAC+AGG | 0.402919 | tig0030729:+46370 | Msa1444490:CDS |
| GCAAAGGCTTTAAAATTAGT+AGG | 0.411992 | tig0030729:+46976 | Msa1444490:CDS |
| GGAGTTCATTATCGTCAAAT+AGG | 0.418518 | tig0030729:+42209 | Msa1444490:five_prime_UTR |
| CTCTAAGAATCAACGTTCAC+CGG | 0.425073 | tig0030729:-41075 | None:intergenic |
| TATATCAGGTCTCAATTCTT+GGG | 0.435812 | tig0030729:-46693 | None:intergenic |
| AAGGCAGACACAGCTGCTTC+CGG | 0.436700 | tig0030729:-46662 | None:intergenic |
| CAATTCTTGGGCTCCTCTAA+AGG | 0.437747 | tig0030729:-46681 | None:intergenic |
| TTTAAAGCCTTTGCAGATTG+AGG | 0.438951 | tig0030729:-46967 | None:intergenic |
| CATGTTATCGAGGGTCGAAA+TGG | 0.443860 | tig0030729:+47198 | Msa1444490:CDS |
| TTACCTTTCAAAATTCGTAA+TGG | 0.446757 | tig0030729:-45864 | None:intergenic |
| ACTGATGTATTGCAGGAATT+CGG | 0.449754 | tig0030729:-42241 | None:intergenic |
| AACAGCAGCTCGACTATGTC+TGG | 0.452770 | tig0030729:-43108 | None:intergenic |
| CTTGAGTCAGTAGGATCAAA+TGG | 0.459954 | tig0030729:-43859 | None:intergenic |
| CTATGAGTCTGCGTTAAGGC+TGG | 0.470224 | tig0030729:+47134 | Msa1444490:CDS |
| GAAGATTCAGCATTTGCAGC+AGG | 0.472445 | tig0030729:-41358 | None:intergenic |
| GCAGACGACATACTCTGTTT+GGG | 0.477597 | tig0030729:-42184 | None:intergenic |
| ATTTATTATTGACAATGAAA+CGG | 0.484844 | tig0030729:+46639 | Msa1444490:CDS |
| CATCATTTCATTGTTTCCGC+AGG | 0.489117 | tig0030729:+43622 | Msa1444490:five_prime_UTR |
| AGAGTGGTGATTTGATCCTT+CGG | 0.499551 | tig0030729:-41132 | None:intergenic |
| AGGCTGGAACCTGGTTACCT+TGG | 0.502118 | tig0030729:+47150 | Msa1444490:CDS |
| ATCCTACTGACTCAAGTCGT+TGG | 0.508303 | tig0030729:+43866 | Msa1444490:five_prime_UTR |
| TCACCTCAAAACTGAAAGCT+TGG | 0.513201 | tig0030729:+41384 | Msa1444490:five_prime_UTR |
| TTGAGCGATATCTTAAAGAC+TGG | 0.515465 | tig0030729:+47238 | Msa1444490:CDS |
| AGTTCTATGAGTCTGCGTTA+AGG | 0.520034 | tig0030729:+47130 | Msa1444490:CDS |
| TTTCCTAATAACAAATTCAT+CGG | 0.522585 | tig0030729:-43071 | None:intergenic |
| ATCAGTTATCAATGAAAATG+AGG | 0.522598 | tig0030729:+42258 | Msa1444490:five_prime_UTR |
| CATTTCGACCCTCGATAACA+TGG | 0.525276 | tig0030729:-47197 | None:intergenic |
| CTATTTACAAAGAATGCCTA+AGG | 0.527178 | tig0030729:+43132 | Msa1444490:five_prime_UTR |
| ATCACCGCTTTATCAGAAAT+GGG | 0.528807 | tig0030729:+43584 | Msa1444490:five_prime_UTR |
| CTCTTCGATACTCTCTTTCG+CGG | 0.539617 | tig0030729:-41522 | None:intergenic |
| TAATTCTGGTGGGAGAGAAA+AGG | 0.541741 | tig0030729:+47014 | Msa1444490:CDS |
| GGCTGAGCTCCATGTTATCG+AGG | 0.543303 | tig0030729:+47188 | Msa1444490:CDS |
| TGATAGCCTCAAGTATAAAA+GGG | 0.550116 | tig0030729:-43565 | None:intergenic |
| AAGAAGAATGGAAGTTCCGA+AGG | 0.552894 | tig0030729:+41116 | Msa1444490:five_prime_UTR |
| AACAGAGTATGTCGTCTGCT+CGG | 0.554802 | tig0030729:+42188 | Msa1444490:five_prime_UTR |
| ATTATTGACAATGAAACGGC+CGG | 0.560636 | tig0030729:+46643 | Msa1444490:CDS |
| AGTGCAGCACCAAGGTAACC+AGG | 0.566814 | tig0030729:-47159 | None:intergenic |
| ATTACCTTCACTATGTACCC+TGG | 0.576596 | tig0030729:-46506 | None:intergenic |
| GCTGAGCTCCATGTTATCGA+GGG | 0.579949 | tig0030729:+47189 | Msa1444490:CDS |
| CTTAATACTTGAGATTGCAA+AGG | 0.590540 | tig0030729:+45474 | Msa1444490:five_prime_UTR |
| AGCAATGCCTCAATCTGCAA+AGG | 0.593004 | tig0030729:+46960 | Msa1444490:CDS |
| GACTCCAAATAGAAGTGTGA+GGG | 0.597056 | tig0030729:+43834 | Msa1444490:intron |
| GGCTTTATATGCTTCTAGAG+AGG | 0.598593 | tig0030729:+46930 | Msa1444490:CDS |
| ATTGACGAGAGGCATATACC+AGG | 0.599836 | tig0030729:+46488 | Msa1444490:CDS |
| TCTGCGTTAAGGCTGGAACC+TGG | 0.600767 | tig0030729:+47141 | Msa1444490:CDS |
| TGAGCGATATCTTAAAGACT+GGG | 0.616659 | tig0030729:+47239 | Msa1444490:CDS |
| AGATCCCATTTCTGATAAAG+CGG | 0.626006 | tig0030729:-43588 | None:intergenic |
| ATATCGCTCAAGCAGAGACA+CGG | 0.641164 | tig0030729:-47226 | None:intergenic |
| ATCTCATCAAATGATTACAA+AGG | 0.644386 | tig0030729:+45067 | Msa1444490:five_prime_UTR |
| GAACAAAGCAGCTCTAGTTG+AGG | 0.646708 | tig0030729:+42445 | Msa1444490:five_prime_UTR |
| TATTGATCCTGCAAGACCAG+AGG | 0.647842 | tig0030729:+46301 | Msa1444490:CDS |
| TGTGTCACATCACAGATGGA+AGG | 0.648304 | tig0030729:+43023 | Msa1444490:intron |
| TATACCAGGGTACATAGTGA+AGG | 0.648445 | tig0030729:+46502 | Msa1444490:CDS |
| AGACTCCAAATAGAAGTGTG+AGG | 0.652884 | tig0030729:+43833 | Msa1444490:intron |
| TATTATTGGAAAGAATGAAG+AGG | 0.659050 | tig0030729:+45841 | Msa1444490:five_prime_UTR |
| AGAGTATTCGAATTGACGAG+AGG | 0.664575 | tig0030729:+46477 | Msa1444490:intron |
| CCTGATATACGCACATACCA+AGG | 0.671979 | tig0030729:+46707 | Msa1444490:CDS |
| GTGCATGCCAGTAATTCTGG+TGG | 0.684548 | tig0030729:+47003 | Msa1444490:CDS |
| TGCATGCCAGTAATTCTGGT+GGG | 0.685043 | tig0030729:+47004 | Msa1444490:CDS |
| TTGACGAGAGGCATATACCA+GGG | 0.694048 | tig0030729:+46489 | Msa1444490:CDS |
| CCAAAGCTAGTGCAGCACCA+AGG | 0.694097 | tig0030729:-47167 | None:intergenic |
| AGCCAACGACTTGAGTCAGT+AGG | 0.695824 | tig0030729:-43868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATCTTTTGTTATAAA+AGG | - | tig0030729:41668-41687 | None:intergenic | 10.0% |
| !!! | TGAACAAATATTAATTTTTA+CGG | + | tig0030729:44091-44110 | Msa1444490:intron | 10.0% |
| !!! | AATTTTATTGCAAAATATAT+GGG | - | tig0030729:44787-44806 | None:intergenic | 10.0% |
| !! | TTTCGATTCATTTATTAATT+TGG | + | tig0030729:41280-41299 | Msa1444490:intron | 15.0% |
| !! | TTCGATTCATTTATTAATTT+GGG | + | tig0030729:41281-41300 | Msa1444490:intron | 15.0% |
| !!! | ATTTTTGAAAAATGTTAATG+AGG | - | tig0030729:42793-42812 | None:intergenic | 15.0% |
| !! | AAATATTAAAATCTTTCTTG+TGG | + | tig0030729:42809-42828 | Msa1444490:intron | 15.0% |
| !! | AATATTAAAATCTTTCTTGT+GGG | + | tig0030729:42810-42829 | Msa1444490:intron | 15.0% |
| !!! | ATAAATTTTGCGTATTTTAT+CGG | + | tig0030729:42967-42986 | Msa1444490:intron | 15.0% |
| !! | TTTCTATACATGATATAATA+TGG | + | tig0030729:44289-44308 | Msa1444490:intron | 15.0% |
| !!! | ATTCATTTGATTTGTTAATT+TGG | + | tig0030729:44316-44335 | Msa1444490:intron | 15.0% |
| !! | GTTAATTGTCAAAATAAAAA+AGG | - | tig0030729:44756-44775 | None:intergenic | 15.0% |
| !!! | CAATTTTATTGCAAAATATA+TGG | - | tig0030729:44788-44807 | None:intergenic | 15.0% |
| !!! | ATTTTATTTCTTCATATACA+TGG | + | tig0030729:44907-44926 | Msa1444490:intron | 15.0% |
| !!! | ATGTACTTTTTGAAAATTAA+TGG | - | tig0030729:45652-45671 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | tig0030729:45944-45963 | Msa1444490:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | tig0030729:45945-45964 | Msa1444490:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | tig0030729:46007-46026 | Msa1444490:intron | 15.0% |
| !! | ATTTATTATTGACAATGAAA+CGG | + | tig0030729:46639-46658 | Msa1444490:CDS | 15.0% |
| !!! | GTATTGAATTCAAATTTTGA+AGG | + | tig0030729:40974-40993 | Msa1444490:five_prime_UTR | 20.0% |
| !! | CAAATAGTAACACAAAAAAA+GGG | - | tig0030729:41021-41040 | None:intergenic | 20.0% |
| !! | TCTTCAACAAAATTGATTAT+TGG | - | tig0030729:41047-41066 | None:intergenic | 20.0% |
| !! | GAAAAAAGAAGAAGAAAAAT+AGG | - | tig0030729:41207-41226 | None:intergenic | 20.0% |
| !! | AAATGCGAAAAAAAAAAAGT+GGG | - | tig0030729:41229-41248 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTTGAATAACA+GGG | + | tig0030729:41316-41335 | Msa1444490:intron | 20.0% |
| !!! | ATTTTCAACTTCTTTCTATA+AGG | - | tig0030729:41756-41775 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAGTAACTTA+CGG | + | tig0030729:41945-41964 | Msa1444490:intron | 20.0% |
| !!! | AAGCTTTTCTGAAATATTTT+TGG | + | tig0030729:42082-42101 | Msa1444490:intron | 20.0% |
| !!! | AGCTTTTCTGAAATATTTTT+GGG | + | tig0030729:42083-42102 | Msa1444490:intron | 20.0% |
| !! | TTTATCTAATTCATGATAGT+TGG | + | tig0030729:42295-42314 | Msa1444490:intron | 20.0% |
| !! | TTTCCTAATAACAAATTCAT+CGG | - | tig0030729:43074-43093 | None:intergenic | 20.0% |
| !!! | AAATTGATTTTACAAACCTT+AGG | - | tig0030729:43151-43170 | None:intergenic | 20.0% |
| !! | CAAAATGCAAATTATATATG+AGG | - | tig0030729:43384-43403 | None:intergenic | 20.0% |
| !!! | ATGTTGTATATTTGTTGAAT+TGG | + | tig0030729:43463-43482 | Msa1444490:intron | 20.0% |
| !! | TTAATATATGTGAGAACAAT+GGG | - | tig0030729:44502-44521 | None:intergenic | 20.0% |
| !! | ATTAATATATGTGAGAACAA+TGG | - | tig0030729:44503-44522 | None:intergenic | 20.0% |
| !! | AGATATAAACAATCATTCTA+GGG | + | tig0030729:44574-44593 | Msa1444490:intron | 20.0% |
| !! | GTATTAAGTGTGTATTATTA+GGG | - | tig0030729:45462-45481 | None:intergenic | 20.0% |
| !! | AGTATTAAGTGTGTATTATT+AGG | - | tig0030729:45463-45482 | None:intergenic | 20.0% |
| !! | AAAAGGATGCTTATAAAAAA+GGG | - | tig0030729:45588-45607 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAAGTACATTGAA+AGG | + | tig0030729:45656-45675 | Msa1444490:intron | 20.0% |
| !!! | TTTCAAAAAGTACATTGAAA+GGG | + | tig0030729:45657-45676 | Msa1444490:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | tig0030729:45946-45965 | Msa1444490:intron | 20.0% |
| !! | GAAAGTGAATATATTGTATT+GGG | + | tig0030729:45968-45987 | Msa1444490:intron | 20.0% |
| !! | AAGTTGTATTGAAAATTGAA+TGG | + | tig0030729:46039-46058 | Msa1444490:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAT+GGG | + | tig0030729:46040-46059 | Msa1444490:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | tig0030729:46075-46094 | Msa1444490:intron | 20.0% |
| !! | AAATTACATAACAAATAAGC+AGG | - | tig0030729:46160-46179 | None:intergenic | 20.0% |
| !!! | TGCTTATTTGTTATGTAATT+TGG | + | tig0030729:46159-46178 | Msa1444490:intron | 20.0% |
| !! | TTAGTAGTATTATTTAATGC+CGG | + | tig0030729:46393-46412 | Msa1444490:intron | 20.0% |
| !!! | TGTTTTAGTTTAGATCAAAT+AGG | + | tig0030729:46534-46553 | Msa1444490:intron | 20.0% |
| !!! | GTTTTAGTTTAGATCAAATA+GGG | + | tig0030729:46535-46554 | Msa1444490:intron | 20.0% |
| !!! | TTTTAGTTTAGATCAAATAG+GGG | + | tig0030729:46536-46555 | Msa1444490:intron | 20.0% |
| !!! | AACTTTTGCATTTCTATAAT+TGG | - | tig0030729:46833-46852 | None:intergenic | 20.0% |
| ! | GCAAATAGTAACACAAAAAA+AGG | - | tig0030729:41022-41041 | None:intergenic | 25.0% |
| ! | CAAATGCGAAAAAAAAAAAG+TGG | - | tig0030729:41230-41249 | None:intergenic | 25.0% |
| !!! | GTTTGTGTTTTTTGAATAAC+AGG | + | tig0030729:41315-41334 | Msa1444490:intron | 25.0% |
| ! | TATATCACAGATTCTTACAA+TGG | - | tig0030729:41548-41567 | None:intergenic | 25.0% |
| ! | ACTAAGCTGTTTATTCAAAT+GGG | - | tig0030729:41608-41627 | None:intergenic | 25.0% |
| ! | AACTAAGCTGTTTATTCAAA+TGG | - | tig0030729:41609-41628 | None:intergenic | 25.0% |
| ! | AAGAAGTTGAAAATAGCTTA+AGG | + | tig0030729:41762-41781 | Msa1444490:intron | 25.0% |
| ! | AGATTATGGAAACAACTTAT+GGG | - | tig0030729:41792-41811 | None:intergenic | 25.0% |
| !! | TTATGTTAGTAGATTAGTTG+CGG | + | tig0030729:41860-41879 | Msa1444490:intron | 25.0% |
| !! | ATAAGTTGAAAGTAACTTAC+GGG | + | tig0030729:41946-41965 | Msa1444490:intron | 25.0% |
| ! | ATCAGTTATCAATGAAAATG+AGG | + | tig0030729:42258-42277 | Msa1444490:five_prime_UTR | 25.0% |
| !! | TATTTTGTCAGTTTTCACTA+TGG | + | tig0030729:42919-42938 | Msa1444490:intron | 25.0% |
| !!! | TTGCTTTTTATCCAGAATTT+TGG | + | tig0030729:43732-43751 | Msa1444490:intron | 25.0% |
| ! | AATCCTTGAGAAATAACAAA+AGG | + | tig0030729:44049-44068 | Msa1444490:intron | 25.0% |
| ! | TATTCAGTAAAGAATCTGTT+TGG | - | tig0030729:44216-44235 | None:intergenic | 25.0% |
| ! | TAATATATGTGAGAACAATG+GGG | - | tig0030729:44501-44520 | None:intergenic | 25.0% |
| ! | GAGATATAAACAATCATTCT+AGG | + | tig0030729:44573-44592 | Msa1444490:intron | 25.0% |
| ! | AATGTCAATTGAACACTTAA+AGG | - | tig0030729:44717-44736 | None:intergenic | 25.0% |
| ! | AAGATAATGACCATAAAAAC+AGG | + | tig0030729:44869-44888 | Msa1444490:intron | 25.0% |
| ! | ATCTCATCAAATGATTACAA+AGG | + | tig0030729:45067-45086 | Msa1444490:five_prime_UTR | 25.0% |
| ! | TGAGATATTACATTGTACAT+GGG | + | tig0030729:45090-45109 | Msa1444490:intron | 25.0% |
| ! | TTGTATGATTAAATGTGTGA+TGG | + | tig0030729:45114-45133 | Msa1444490:intron | 25.0% |
| ! | AACTTTAGATGTGAGAAAAA+TGG | - | tig0030729:45197-45216 | None:intergenic | 25.0% |
| ! | CAAAAGGATGCTTATAAAAA+AGG | - | tig0030729:45589-45608 | None:intergenic | 25.0% |
| ! | CATGTTAAATGAACAATTTG+AGG | - | tig0030729:45785-45804 | None:intergenic | 25.0% |
| ! | CTGATGTATATTGTAAATGA+AGG | + | tig0030729:45811-45830 | Msa1444490:intron | 25.0% |
| ! | TATTATTGGAAAGAATGAAG+AGG | + | tig0030729:45841-45860 | Msa1444490:five_prime_UTR | 25.0% |
| ! | TTACCTTTCAAAATTCGTAA+TGG | - | tig0030729:45867-45886 | None:intergenic | 25.0% |
| ! | GGAAAGTGAATATATTGTAT+TGG | + | tig0030729:45967-45986 | Msa1444490:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | tig0030729:46074-46093 | Msa1444490:intron | 25.0% |
| ! | TTATGTAATTTGGCAATTAC+AGG | + | tig0030729:46169-46188 | Msa1444490:intron | 25.0% |
| ! | TCCATACATCATAACATATA+TGG | + | tig0030729:46205-46224 | Msa1444490:exon | 25.0% |
| ! | TCCATATATGTTATGATGTA+TGG | - | tig0030729:46209-46228 | None:intergenic | 25.0% |
| ! | ATGATATAATTCAATCCATC+CGG | - | tig0030729:46415-46434 | None:intergenic | 25.0% |
| !! | TGACAAGTTGAGTTTATTTA+GGG | + | tig0030729:46614-46633 | Msa1444490:intron | 25.0% |
| !!! | TACCAAGGTTTATTTTTTAC+TGG | + | tig0030729:46722-46741 | Msa1444490:intron | 25.0% |
| ! | ATCCAGTAAAAAATAAACCT+TGG | - | tig0030729:46727-46746 | None:intergenic | 25.0% |
| !!! | GAATCTCATTTTTCTTTTTC+AGG | + | tig0030729:46868-46887 | Msa1444490:intron | 25.0% |
| !!! | TCATTTTTCTTTTTCAGGTT+TGG | + | tig0030729:46873-46892 | Msa1444490:intron | 25.0% |
| !!! | TTTTATGACAAAGTATCTTC+AGG | + | tig0030729:47050-47069 | Msa1444490:intron | 25.0% |
| ! | ACTTAATGCATTCATCATAT+AGG | + | tig0030729:47101-47120 | Msa1444490:intron | 25.0% |
| TTTGTTGAAGAATCACTTTC+CGG | + | tig0030729:41056-41075 | Msa1444490:five_prime_UTR | 30.0% | |
| !!! | AAATAGGTTTTGAACTTACG+AGG | - | tig0030729:41191-41210 | None:intergenic | 30.0% |
| !!! | TGAAGTTATTTTTTGTGTGC+AGG | + | tig0030729:41477-41496 | Msa1444490:intron | 30.0% |
| GAGATTATGGAAACAACTTA+TGG | - | tig0030729:41793-41812 | None:intergenic | 30.0% | |
| !! | CTTTCTTTTGATTATGCAGT+TGG | + | tig0030729:41895-41914 | Msa1444490:intron | 30.0% |
| CCTAGTAAACACATAATCAA+TGG | - | tig0030729:42055-42074 | None:intergenic | 30.0% | |
| ! | CCATTGATTATGTGTTTACT+AGG | + | tig0030729:42052-42071 | Msa1444490:intron | 30.0% |
| ! | ATATGTGTGCTGTTCATAAA+CGG | - | tig0030729:42134-42153 | None:intergenic | 30.0% |
| ! | ATTGATAACTGATGTATTGC+AGG | - | tig0030729:42251-42270 | None:intergenic | 30.0% |
| CTAATTCATGATAGTTGGAT+TGG | + | tig0030729:42300-42319 | Msa1444490:intron | 30.0% | |
| !! | TGGTTTTTGCTGTAGTTTTA+AGG | + | tig0030729:42320-42339 | Msa1444490:intron | 30.0% |
| !!! | GGTTTTTGCTGTAGTTTTAA+GGG | + | tig0030729:42321-42340 | Msa1444490:intron | 30.0% |
| AAACATCATAAACAACCTGT+AGG | - | tig0030729:42356-42375 | None:intergenic | 30.0% | |
| AAAGAGATCAGAGAACAAAA+AGG | - | tig0030729:42379-42398 | None:intergenic | 30.0% | |
| CAAGTTGTTTATCCAAGTAA+GGG | - | tig0030729:42509-42528 | None:intergenic | 30.0% | |
| ! | TCAAGTTGTTTATCCAAGTA+AGG | - | tig0030729:42510-42529 | None:intergenic | 30.0% |
| CAAGTTATCTTGAGAATGTT+TGG | + | tig0030729:42637-42656 | Msa1444490:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | tig0030729:42661-42680 | Msa1444490:intron | 30.0% | |
| ACTAAACACTCTTGAATCTA+AGG | - | tig0030729:42765-42784 | None:intergenic | 30.0% | |
| !! | AATGCTGATTCCAATGTATA+TGG | + | tig0030729:42851-42870 | Msa1444490:intron | 30.0% |
| !! | ATGCTGATTCCAATGTATAT+GGG | + | tig0030729:42852-42871 | Msa1444490:intron | 30.0% |
| ATACAGAGTACAGTCATTTA+AGG | - | tig0030729:42900-42919 | None:intergenic | 30.0% | |
| !! | TTGCCGATGAATTTGTTATT+AGG | + | tig0030729:43068-43087 | Msa1444490:five_prime_UTR | 30.0% |
| CTATTTACAAAGAATGCCTA+AGG | + | tig0030729:43132-43151 | Msa1444490:five_prime_UTR | 30.0% | |
| AATCCATGACAGCATTTAAA+GGG | - | tig0030729:43213-43232 | None:intergenic | 30.0% | |
| ! | AGGTTTAAGATGATATGTCT+AGG | - | tig0030729:43364-43383 | None:intergenic | 30.0% |
| TGATAGCCTCAAGTATAAAA+GGG | - | tig0030729:43568-43587 | None:intergenic | 30.0% | |
| TACAAATCGATCCAAAATTC+TGG | - | tig0030729:43746-43765 | None:intergenic | 30.0% | |
| ATGCTCTCCAAGAATATAAT+TGG | + | tig0030729:43791-43810 | Msa1444490:intron | 30.0% | |
| TTGTGCACCAATTATATTCT+TGG | - | tig0030729:43801-43820 | None:intergenic | 30.0% | |
| ! | TATTTGGAGTCTGAAATTTG+AGG | - | tig0030729:43825-43844 | None:intergenic | 30.0% |
| !! | TTTTGCTTGTTACGACAAAT+TGG | + | tig0030729:43967-43986 | Msa1444490:intron | 30.0% |
| !!! | TCACCTTTTGTTATTTCTCA+AGG | - | tig0030729:44055-44074 | None:intergenic | 30.0% |
| GGACTATTTCAATGATTTCA+TGG | + | tig0030729:44112-44131 | Msa1444490:intron | 30.0% | |
| AATATATGTGAGAACAATGG+GGG | - | tig0030729:44500-44519 | None:intergenic | 30.0% | |
| !! | CTTAAAACCTTCAAGTTGAA+AGG | + | tig0030729:44527-44546 | Msa1444490:intron | 30.0% |
| TTAAACAGCCTAAAACTGTT+AGG | + | tig0030729:44602-44621 | Msa1444490:intron | 30.0% | |
| ! | AAGACTATCCTAACAGTTTT+AGG | - | tig0030729:44613-44632 | None:intergenic | 30.0% |
| !!! | TTTTTCCATGCCTGTTTTTA+TGG | - | tig0030729:44882-44901 | None:intergenic | 30.0% |
| GTGAGATATTACATTGTACA+TGG | + | tig0030729:45089-45108 | Msa1444490:intron | 30.0% | |
| GAGATATTACATTGTACATG+GGG | + | tig0030729:45091-45110 | Msa1444490:intron | 30.0% | |
| ! | TTGCTAAAACATCTTTTCGA+TGG | + | tig0030729:45152-45171 | Msa1444490:intron | 30.0% |
| ! | TGTGAGAAAAATGGTCTTAA+GGG | - | tig0030729:45188-45207 | None:intergenic | 30.0% |
| ! | ATGTGAGAAAAATGGTCTTA+AGG | - | tig0030729:45189-45208 | None:intergenic | 30.0% |
| TTGATCAAAACAAGAGAACA+AGG | - | tig0030729:45276-45295 | None:intergenic | 30.0% | |
| ! | TTTGACTTTGTTTCCTATTC+TGG | + | tig0030729:45396-45415 | Msa1444490:intron | 30.0% |
| CTTAATACTTGAGATTGCAA+AGG | + | tig0030729:45474-45493 | Msa1444490:five_prime_UTR | 30.0% | |
| ! | CACTCTTTTGTACTTACAAA+AGG | - | tig0030729:45605-45624 | None:intergenic | 30.0% |
| CTTATTAAAAGAGACAGAGA+TGG | + | tig0030729:45625-45644 | Msa1444490:intron | 30.0% | |
| ! | TCTTTCGTGCAATTAACTTT+TGG | - | tig0030729:45696-45715 | None:intergenic | 30.0% |
| ATGAAGGTTGAAGCTATTAT+TGG | + | tig0030729:45827-45846 | Msa1444490:intron | 30.0% | |
| !!! | AATTGAATGGGTCAGTTTTT+TGG | + | tig0030729:46052-46071 | Msa1444490:intron | 30.0% |
| !!! | ATTGAATGGGTCAGTTTTTT+GGG | + | tig0030729:46053-46072 | Msa1444490:intron | 30.0% |
| ACATAACAAATAAGCAGGAT+GGG | - | tig0030729:46155-46174 | None:intergenic | 30.0% | |
| TACATAACAAATAAGCAGGA+TGG | - | tig0030729:46156-46175 | None:intergenic | 30.0% | |
| TAGTATTATTTAATGCCGGA+TGG | + | tig0030729:46397-46416 | Msa1444490:intron | 30.0% | |
| ! | CTGACAAGTTGAGTTTATTT+AGG | + | tig0030729:46613-46632 | Msa1444490:intron | 30.0% |
| TATATCAGGTCTCAATTCTT+GGG | - | tig0030729:46696-46715 | None:intergenic | 30.0% | |
| AAAAACATGAATAGTGTTGC+AGG | - | tig0030729:46782-46801 | None:intergenic | 30.0% | |
| ! | AGGTTTGGTTCATACATATT+TGG | + | tig0030729:46888-46907 | Msa1444490:intron | 30.0% |
| !! | GCAAAGGCTTTAAAATTAGT+AGG | + | tig0030729:46976-46995 | Msa1444490:CDS | 30.0% |
| ! | CAATACTCTCTTCGTTTTGA+CGG | - | tig0030729:40960-40979 | None:intergenic | 35.0% |
| !! | AAAGCGCTTTTGAAGAAGAA+TGG | + | tig0030729:41104-41123 | Msa1444490:five_prime_UTR | 35.0% |
| ! | TTTTGAACTTACGAGGATCT+GGG | - | tig0030729:41184-41203 | None:intergenic | 35.0% |
| ! | ATACCAAGCTTTCAGTTTTG+AGG | - | tig0030729:41390-41409 | None:intergenic | 35.0% |
| ACAACTTATGGGAGAGATTA+TGG | - | tig0030729:41806-41825 | None:intergenic | 35.0% | |
| CAGTTGGAAACAATGTTAGT+AGG | + | tig0030729:41911-41930 | Msa1444490:intron | 35.0% | |
| AGACTGTTTGTGAGAGTTTA+TGG | - | tig0030729:41978-41997 | None:intergenic | 35.0% | |
| GGAGTTCATTATCGTCAAAT+AGG | + | tig0030729:42209-42228 | Msa1444490:five_prime_UTR | 35.0% | |
| ACTGATGTATTGCAGGAATT+CGG | - | tig0030729:42244-42263 | None:intergenic | 35.0% | |
| TGTTCTCTGATCTCTTTAAC+AGG | + | tig0030729:42382-42401 | Msa1444490:intron | 35.0% | |
| ! | TCCACTCCTCTTTTATAGTT+TGG | + | tig0030729:42482-42501 | Msa1444490:intron | 35.0% |
| TCCAAACTATAAAAGAGGAG+TGG | - | tig0030729:42486-42505 | None:intergenic | 35.0% | |
| AAGGGTCCAAACTATAAAAG+AGG | - | tig0030729:42491-42510 | None:intergenic | 35.0% | |
| TTATAGTTTGGACCCTTACT+TGG | + | tig0030729:42494-42513 | Msa1444490:intron | 35.0% | |
| ACGAACACTTGTAAGAAAAG+CGG | - | tig0030729:42552-42571 | None:intergenic | 35.0% | |
| !!! | GTGGGTATATTTTGATGCAA+AGG | + | tig0030729:42828-42847 | Msa1444490:intron | 35.0% |
| !! | TGCTGATTCCAATGTATATG+GGG | + | tig0030729:42853-42872 | Msa1444490:intron | 35.0% |
| !! | TTTAAGGCCAATTTTCTCCA+TGG | - | tig0030729:42884-42903 | None:intergenic | 35.0% |
| ACAGCATTTAAAGGGAATGT+TGG | - | tig0030729:43205-43224 | None:intergenic | 35.0% | |
| ATTCCCTTTAAATGCTGTCA+TGG | + | tig0030729:43207-43226 | Msa1444490:intron | 35.0% | |
| GAATCCATGACAGCATTTAA+AGG | - | tig0030729:43214-43233 | None:intergenic | 35.0% | |
| GTGTTATCAGTTCATTCATG+AGG | - | tig0030729:43278-43297 | None:intergenic | 35.0% | |
| TTCAATGTTCGTCCATTCAA+CGG | + | tig0030729:43318-43337 | Msa1444490:intron | 35.0% | |
| AAGTATAAAAGGGCAATGTC+TGG | - | tig0030729:43558-43577 | None:intergenic | 35.0% | |
| ! | ACATTGCCCTTTTATACTTG+AGG | + | tig0030729:43559-43578 | Msa1444490:five_prime_UTR | 35.0% |
| GTGATAGCCTCAAGTATAAA+AGG | - | tig0030729:43569-43588 | None:intergenic | 35.0% | |
| TATCACCGCTTTATCAGAAA+TGG | + | tig0030729:43583-43602 | Msa1444490:five_prime_UTR | 35.0% | |
| ATCACCGCTTTATCAGAAAT+GGG | + | tig0030729:43584-43603 | Msa1444490:five_prime_UTR | 35.0% | |
| AGATCCCATTTCTGATAAAG+CGG | - | tig0030729:43591-43610 | None:intergenic | 35.0% | |
| TCTACTGTTTATCAGCTTAG+AGG | + | tig0030729:43944-43963 | Msa1444490:intron | 35.0% | |
| ATGTGGTATATATGCTATGC+TGG | - | tig0030729:44027-44046 | None:intergenic | 35.0% | |
| AGCATAGCATATATACCACA+TGG | + | tig0030729:44026-44045 | Msa1444490:intron | 35.0% | |
| TATTTCTCAAGGATTCCATG+TGG | - | tig0030729:44044-44063 | None:intergenic | 35.0% | |
| GAAATAACAAAAGGTGACTG+CGG | + | tig0030729:44058-44077 | Msa1444490:intron | 35.0% | |
| AAATAACAAAAGGTGACTGC+GGG | + | tig0030729:44059-44078 | Msa1444490:intron | 35.0% | |
| ! | AGCGAACAACTTAAGCTTTT+GGG | + | tig0030729:44401-44420 | Msa1444490:intron | 35.0% |
| AGTTCAAACTGTCAATCACT+CGG | - | tig0030729:44464-44483 | None:intergenic | 35.0% | |
| GCAAAATCCTTTCAACTTGA+AGG | - | tig0030729:44537-44556 | None:intergenic | 35.0% | |
| ! | AGTTGAAAGGATTTTGCATG+AGG | + | tig0030729:44540-44559 | Msa1444490:intron | 35.0% |
| TATTTCCACTGGTGTTTCTT+AGG | + | tig0030729:44673-44692 | Msa1444490:intron | 35.0% | |
| AATGACCATAAAAACAGGCA+TGG | + | tig0030729:44874-44893 | Msa1444490:intron | 35.0% | |
| ! | GGATTGTGTTTTATATTGCC+CGG | + | tig0030729:44968-44987 | Msa1444490:intron | 35.0% |
| CAGAATTTGCCAAGTTTCAA+GGG | - | tig0030729:44998-45017 | None:intergenic | 35.0% | |
| TCAGAATTTGCCAAGTTTCA+AGG | - | tig0030729:44999-45018 | None:intergenic | 35.0% | |
| GCTTATAAAAAAGGGATGGA+GGG | - | tig0030729:45580-45599 | None:intergenic | 35.0% | |
| TGCTTATAAAAAAGGGATGG+AGG | - | tig0030729:45581-45600 | None:intergenic | 35.0% | |
| GGATGCTTATAAAAAAGGGA+TGG | - | tig0030729:45584-45603 | None:intergenic | 35.0% | |
| ! | AGGCCATTACGAATTTTGAA+AGG | + | tig0030729:45861-45880 | Msa1444490:five_prime_UTR | 35.0% |
| CAAAGTAGGTCAATTATACC+GGG | - | tig0030729:45909-45928 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | tig0030729:45910-45929 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | tig0030729:45923-45942 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | tig0030729:46088-46107 | Msa1444490:intron | 35.0% | |
| !! | TTGTGGCTCTATCTGTTTTA+TGG | + | tig0030729:46327-46346 | Msa1444490:CDS | 35.0% |
| !! | TGTGGCTCTATCTGTTTTAT+GGG | + | tig0030729:46328-46347 | Msa1444490:CDS | 35.0% |
| ! | CTCTATCTGTTTTATGGGAA+AGG | + | tig0030729:46333-46352 | Msa1444490:CDS | 35.0% |
| ATTATTGACAATGAAACGGC+CGG | + | tig0030729:46643-46662 | Msa1444490:CDS | 35.0% | |
| GTATATCAGGTCTCAATTCT+TGG | - | tig0030729:46697-46716 | None:intergenic | 35.0% | |
| ! | TTTAAAGCCTTTGCAGATTG+AGG | - | tig0030729:46970-46989 | None:intergenic | 35.0% |
| TTGAGCGATATCTTAAAGAC+TGG | + | tig0030729:47238-47257 | Msa1444490:CDS | 35.0% | |
| TGAGCGATATCTTAAAGACT+GGG | + | tig0030729:47239-47258 | Msa1444490:CDS | 35.0% | |
| ! | CTCTAAGAATCAACGTTCAC+CGG | - | tig0030729:41078-41097 | None:intergenic | 40.0% |
| AAGAAGAATGGAAGTTCCGA+AGG | + | tig0030729:41116-41135 | Msa1444490:five_prime_UTR | 40.0% | |
| AGAGTGGTGATTTGATCCTT+CGG | - | tig0030729:41135-41154 | None:intergenic | 40.0% | |
| ATCACCACTCTTCTCGAAAA+TGG | + | tig0030729:41144-41163 | Msa1444490:five_prime_UTR | 40.0% | |
| !! | GTTTTGAACTTACGAGGATC+TGG | - | tig0030729:41185-41204 | None:intergenic | 40.0% |
| !!! | AAGCTTTCAGTTTTGAGGTG+AGG | - | tig0030729:41385-41404 | None:intergenic | 40.0% |
| TCACCTCAAAACTGAAAGCT+TGG | + | tig0030729:41384-41403 | Msa1444490:five_prime_UTR | 40.0% | |
| AAACTGCTTGGGAGAGATTA+TGG | - | tig0030729:41831-41850 | None:intergenic | 40.0% | |
| AAGCACTTACGAAACTGCTT+GGG | - | tig0030729:41842-41861 | None:intergenic | 40.0% | |
| TAAGCACTTACGAAACTGCT+TGG | - | tig0030729:41843-41862 | None:intergenic | 40.0% | |
| ! | CATAATCAATGGAGCTTGCT+AGG | - | tig0030729:42044-42063 | None:intergenic | 40.0% |
| CTGAAAACAGCTTATGGACA+CGG | + | tig0030729:42667-42686 | Msa1444490:intron | 40.0% | |
| GAACTTGTGAGACTGTTTGA+GGG | - | tig0030729:42701-42720 | None:intergenic | 40.0% | |
| AGAACTTGTGAGACTGTTTG+AGG | - | tig0030729:42702-42721 | None:intergenic | 40.0% | |
| ! | TCTTGAATCTAAGGTCTGTC+TGG | - | tig0030729:42756-42775 | None:intergenic | 40.0% |
| TGGACAATCCCCATATACAT+TGG | - | tig0030729:42864-42883 | None:intergenic | 40.0% | |
| ATGTATATGGGGATTGTCCA+TGG | + | tig0030729:42864-42883 | Msa1444490:intron | 40.0% | |
| GGATTGTCCATGGAGAAAAT+TGG | + | tig0030729:42874-42893 | Msa1444490:intron | 40.0% | |
| TGTGACACAAACAACTCATG+AGG | - | tig0030729:43012-43031 | None:intergenic | 40.0% | |
| TGTTTGTGTCACATCACAGA+TGG | + | tig0030729:43019-43038 | Msa1444490:intron | 40.0% | |
| TCATTCATGAGGATGCTAGT+GGG | - | tig0030729:43267-43286 | None:intergenic | 40.0% | |
| TTCATTCATGAGGATGCTAG+TGG | - | tig0030729:43268-43287 | None:intergenic | 40.0% | |
| !! | AAACATAAGGCACCGTTGAA+TGG | - | tig0030729:43333-43352 | None:intergenic | 40.0% |
| ! | TCAACGGTGCCTTATGTTTT+TGG | + | tig0030729:43334-43353 | Msa1444490:intron | 40.0% |
| CTAGGACAGCCAAAAACATA+AGG | - | tig0030729:43346-43365 | None:intergenic | 40.0% | |
| TGACTGCTTGCTTTCACTTT+AGG | + | tig0030729:43429-43448 | Msa1444490:intron | 40.0% | |
| CATCATTTCATTGTTTCCGC+AGG | + | tig0030729:43622-43641 | Msa1444490:five_prime_UTR | 40.0% | |
| CTGAATCAACAACAAACCTG+CGG | - | tig0030729:43641-43660 | None:intergenic | 40.0% | |
| !! | TTTGTTGTTGATTCAGCCCT+TGG | + | tig0030729:43645-43664 | Msa1444490:intron | 40.0% |
| ! | AGACTCCAAATAGAAGTGTG+AGG | + | tig0030729:43833-43852 | Msa1444490:intron | 40.0% |
| ! | GACTCCAAATAGAAGTGTGA+GGG | + | tig0030729:43834-43853 | Msa1444490:intron | 40.0% |
| CTTGAGTCAGTAGGATCAAA+TGG | - | tig0030729:43862-43881 | None:intergenic | 40.0% | |
| CGTATTGAGCTTGACAAGTT+TGG | + | tig0030729:44146-44165 | Msa1444490:intron | 40.0% | |
| !! | CTGCATCATGAAACTTGTTG+CGG | + | tig0030729:44369-44388 | Msa1444490:intron | 40.0% |
| ! | AAGCTTAAGTTGTTCGCTGT+AGG | - | tig0030729:44399-44418 | None:intergenic | 40.0% |
| ! | CAGCGAACAACTTAAGCTTT+TGG | + | tig0030729:44400-44419 | Msa1444490:intron | 40.0% |
| ACTCGTTGTGATATTTCCAC+TGG | + | tig0030729:44662-44681 | Msa1444490:intron | 40.0% | |
| AATGTACACCAACATCTCCA+AGG | + | tig0030729:44810-44829 | Msa1444490:intron | 40.0% | |
| ATGTACACCAACATCTCCAA+GGG | + | tig0030729:44811-44830 | Msa1444490:intron | 40.0% | |
| ! | TAAATGTGTGATGGAGCTGT+AGG | + | tig0030729:45123-45142 | Msa1444490:intron | 40.0% |
| ! | ACTTTGTTTCCTATTCTGGC+AGG | + | tig0030729:45400-45419 | Msa1444490:intron | 40.0% |
| CCGGTATAATTGACCTACTT+TGG | + | tig0030729:45907-45926 | Msa1444490:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | tig0030729:46089-46108 | Msa1444490:intron | 40.0% | |
| AGCATTATCGTATGCTGAAC+AGG | + | tig0030729:46370-46389 | Msa1444490:CDS | 40.0% | |
| ! | AGAGTATTCGAATTGACGAG+AGG | + | tig0030729:46477-46496 | Msa1444490:intron | 40.0% |
| TATACCAGGGTACATAGTGA+AGG | + | tig0030729:46502-46521 | Msa1444490:CDS | 40.0% | |
| ATTACCTTCACTATGTACCC+TGG | - | tig0030729:46509-46528 | None:intergenic | 40.0% | |
| ACTTCGCGTTTACAGTAGAA+TGG | - | tig0030729:46809-46828 | None:intergenic | 40.0% | |
| !!! | GGCGCTTTTTAAGATCAAAG+AGG | + | tig0030729:46909-46928 | Msa1444490:CDS | 40.0% |
| ! | GGCTTTATATGCTTCTAGAG+AGG | + | tig0030729:46930-46949 | Msa1444490:CDS | 40.0% |
| TAATTCTGGTGGGAGAGAAA+AGG | + | tig0030729:47014-47033 | Msa1444490:CDS | 40.0% | |
| AGTTCTATGAGTCTGCGTTA+AGG | + | tig0030729:47130-47149 | Msa1444490:CDS | 40.0% | |
| !! | GAGTCCATTTTCGAGAAGAG+TGG | - | tig0030729:41151-41170 | None:intergenic | 45.0% |
| GAAGATTCAGCATTTGCAGC+AGG | - | tig0030729:41361-41380 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGCAGGTGCTACT+TGG | + | tig0030729:41487-41506 | Msa1444490:intron | 45.0% |
| CTCTTCGATACTCTCTTTCG+CGG | - | tig0030729:41525-41544 | None:intergenic | 45.0% | |
| TCTCACAAGCGCTTATGTCT+CGG | + | tig0030729:41995-42014 | Msa1444490:intron | 45.0% | |
| GCAGACGACATACTCTGTTT+GGG | - | tig0030729:42187-42206 | None:intergenic | 45.0% | |
| AGCAGACGACATACTCTGTT+TGG | - | tig0030729:42188-42207 | None:intergenic | 45.0% | |
| AACAGAGTATGTCGTCTGCT+CGG | + | tig0030729:42188-42207 | Msa1444490:five_prime_UTR | 45.0% | |
| TAAGGGTTTGCATGTCCTAC+AGG | + | tig0030729:42338-42357 | Msa1444490:intron | 45.0% | |
| ! | GAACAAAGCAGCTCTAGTTG+AGG | + | tig0030729:42445-42464 | Msa1444490:five_prime_UTR | 45.0% |
| TGTGTCACATCACAGATGGA+AGG | + | tig0030729:43023-43042 | Msa1444490:intron | 45.0% | |
| GGCAAATTTCGAGCTTTGCT+TGG | - | tig0030729:43053-43072 | None:intergenic | 45.0% | |
| CGCAGAATGAACCTTTGATG+TGG | + | tig0030729:43177-43196 | Msa1444490:intron | 45.0% | |
| !! | GAATGTTGGTGCCACATCAA+AGG | - | tig0030729:43191-43210 | None:intergenic | 45.0% |
| CATTCATGAGGATGCTAGTG+GGG | - | tig0030729:43266-43285 | None:intergenic | 45.0% | |
| GACCAACGGATCATATTGGA+GGG | - | tig0030729:43674-43693 | None:intergenic | 45.0% | |
| AGACCAACGGATCATATTGG+AGG | - | tig0030729:43675-43694 | None:intergenic | 45.0% | |
| AGGAGACCAACGGATCATAT+TGG | - | tig0030729:43678-43697 | None:intergenic | 45.0% | |
| !! | ATCCTACTGACTCAAGTCGT+TGG | + | tig0030729:43866-43885 | Msa1444490:five_prime_UTR | 45.0% |
| GTACCAATTCTCTTGCCATG+CGG | + | tig0030729:44252-44271 | Msa1444490:intron | 45.0% | |
| AACAAAGAACACCAACCGCA+TGG | - | tig0030729:44270-44289 | None:intergenic | 45.0% | |
| TGTCAATCACTCGGTTAGAG+AGG | - | tig0030729:44455-44474 | None:intergenic | 45.0% | |
| TTCGACCTAAGAAACACCAG+TGG | - | tig0030729:44681-44700 | None:intergenic | 45.0% | |
| TGTACACCAACATCTCCAAG+GGG | + | tig0030729:44812-44831 | Msa1444490:intron | 45.0% | |
| ATATAGAATGCATGCCCCCT+TGG | - | tig0030729:44830-44849 | None:intergenic | 45.0% | |
| ! | CCAAGTTTCAAGGGTTTTCC+GGG | - | tig0030729:44989-45008 | None:intergenic | 45.0% |
| ! | GCCAAGTTTCAAGGGTTTTC+CGG | - | tig0030729:44990-45009 | None:intergenic | 45.0% |
| TTGTTTCCTATTCTGGCAGG+TGG | + | tig0030729:45403-45422 | Msa1444490:intron | 45.0% | |
| AAGTTATACTACCTCCGTCC+CGG | + | tig0030729:45888-45907 | Msa1444490:intron | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | tig0030729:45905-45924 | None:intergenic | 45.0% | |
| TAATAAACTACCCCTCGTCC+CGG | - | tig0030729:46110-46129 | None:intergenic | 45.0% | |
| TATTGATCCTGCAAGACCAG+AGG | + | tig0030729:46301-46320 | Msa1444490:CDS | 45.0% | |
| !! | ACAAAAACCTCTGGTCTTGC+AGG | - | tig0030729:46311-46330 | None:intergenic | 45.0% |
| ! | TGCAAGACCAGAGGTTTTTG+TGG | + | tig0030729:46310-46329 | Msa1444490:CDS | 45.0% |
| GATAGAGCCACAAAAACCTC+TGG | - | tig0030729:46320-46339 | None:intergenic | 45.0% | |
| ! | ATTGACGAGAGGCATATACC+AGG | + | tig0030729:46488-46507 | Msa1444490:CDS | 45.0% |
| ! | TTGACGAGAGGCATATACCA+GGG | + | tig0030729:46489-46508 | Msa1444490:CDS | 45.0% |
| CAATTCTTGGGCTCCTCTAA+AGG | - | tig0030729:46684-46703 | None:intergenic | 45.0% | |
| CCTTGGTATGTGCGTATATC+AGG | - | tig0030729:46710-46729 | None:intergenic | 45.0% | |
| CCTGATATACGCACATACCA+AGG | + | tig0030729:46707-46726 | Msa1444490:CDS | 45.0% | |
| AGCAATGCCTCAATCTGCAA+AGG | + | tig0030729:46960-46979 | Msa1444490:CDS | 45.0% | |
| GATGTGCATGCCAGTAATTC+TGG | + | tig0030729:47000-47019 | Msa1444490:CDS | 45.0% | |
| TGCATGCCAGTAATTCTGGT+GGG | + | tig0030729:47004-47023 | Msa1444490:CDS | 45.0% | |
| TTCTCTCCCACCAGAATTAC+TGG | - | tig0030729:47013-47032 | None:intergenic | 45.0% | |
| CATTTCGACCCTCGATAACA+TGG | - | tig0030729:47200-47219 | None:intergenic | 45.0% | |
| CATGTTATCGAGGGTCGAAA+TGG | + | tig0030729:47198-47217 | Msa1444490:CDS | 45.0% | |
| ATATCGCTCAAGCAGAGACA+CGG | - | tig0030729:47229-47248 | None:intergenic | 45.0% | |
| !! | ATTTATTATTAAATTACTAT+TGG | + | tig0030729:43502-43521 | Msa1444490:intron | 5.0% |
| AACAGCAGCTCGACTATGTC+TGG | - | tig0030729:43111-43130 | None:intergenic | 50.0% | |
| TCATATTGGAGGGTGGCCAA+GGG | - | tig0030729:43664-43683 | None:intergenic | 50.0% | |
| ATCATATTGGAGGGTGGCCA+AGG | - | tig0030729:43665-43684 | None:intergenic | 50.0% | |
| CAACGGATCATATTGGAGGG+TGG | - | tig0030729:43671-43690 | None:intergenic | 50.0% | |
| CACCCTCCAATATGATCCGT+TGG | + | tig0030729:43669-43688 | Msa1444490:intron | 50.0% | |
| CCAATTCGCTAGGAGACCAA+CGG | - | tig0030729:43688-43707 | None:intergenic | 50.0% | |
| ! | CGTTGGTCTCCTAGCGAATT+GGG | + | tig0030729:43686-43705 | Msa1444490:intron | 50.0% |
| ! | GTTGGTCTCCTAGCGAATTG+GGG | + | tig0030729:43687-43706 | Msa1444490:intron | 50.0% |
| TTGGTCTCCTAGCGAATTGG+GGG | + | tig0030729:43688-43707 | Msa1444490:intron | 50.0% | |
| CTAAAAGCCCCCAATTCGCT+AGG | - | tig0030729:43698-43717 | None:intergenic | 50.0% | |
| GGAGCCCTCACACTTCTATT+TGG | - | tig0030729:43841-43860 | None:intergenic | 50.0% | |
| AGCCAACGACTTGAGTCAGT+AGG | - | tig0030729:43871-43890 | None:intergenic | 50.0% | |
| CAACCGCATGGCAAGAGAAT+TGG | - | tig0030729:44258-44277 | None:intergenic | 50.0% | |
| CAATTCTCTTGCCATGCGGT+TGG | + | tig0030729:44256-44275 | Msa1444490:intron | 50.0% | |
| TGAGAACAATGGGGGAAGCA+AGG | - | tig0030729:44492-44511 | None:intergenic | 50.0% | |
| GTACACCAACATCTCCAAGG+GGG | + | tig0030729:44813-44832 | Msa1444490:intron | 50.0% | |
| CCCGGAAAACCCTTGAAACT+TGG | + | tig0030729:44986-45005 | Msa1444490:intron | 50.0% | |
| !! | AACGTAGCGCTGGCAAGTAA+AGG | - | tig0030729:45032-45051 | None:intergenic | 50.0% |
| GTGCATGCCAGTAATTCTGG+TGG | + | tig0030729:47003-47022 | Msa1444490:CDS | 50.0% | |
| CTATGAGTCTGCGTTAAGGC+TGG | + | tig0030729:47134-47153 | Msa1444490:CDS | 50.0% | |
| GCTGAGCTCCATGTTATCGA+GGG | + | tig0030729:47189-47208 | Msa1444490:CDS | 50.0% | |
| ! | CCGTTGGTCTCCTAGCGAAT+TGG | + | tig0030729:43685-43704 | Msa1444490:intron | 55.0% |
| ACTGAGCTTCAACGTAGCGC+TGG | - | tig0030729:45042-45061 | None:intergenic | 55.0% | |
| TCCTATTCTGGCAGGTGGCT+TGG | + | tig0030729:45408-45427 | Msa1444490:intron | 55.0% | |
| TCCAAGCCACCTGCCAGAAT+AGG | - | tig0030729:45412-45431 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | tig0030729:45902-45921 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGGGACGA+GGG | + | tig0030729:46096-46115 | Msa1444490:intron | 55.0% | |
| GTCAGTTATTCCGGGACGAG+GGG | + | tig0030729:46097-46116 | Msa1444490:intron | 55.0% | |
| AAGGCAGACACAGCTGCTTC+CGG | - | tig0030729:46665-46684 | None:intergenic | 55.0% | |
| GCAGCTGTGTCTGCCTTTAG+AGG | + | tig0030729:46668-46687 | Msa1444490:CDS | 55.0% | |
| TCTGCGTTAAGGCTGGAACC+TGG | + | tig0030729:47141-47160 | Msa1444490:CDS | 55.0% | |
| AGGCTGGAACCTGGTTACCT+TGG | + | tig0030729:47150-47169 | Msa1444490:CDS | 55.0% | |
| AGTGCAGCACCAAGGTAACC+AGG | - | tig0030729:47162-47181 | None:intergenic | 55.0% | |
| CCAAAGCTAGTGCAGCACCA+AGG | - | tig0030729:47170-47189 | None:intergenic | 55.0% | |
| !! | CCTTGGTGCTGCACTAGCTT+TGG | + | tig0030729:47167-47186 | Msa1444490:CDS | 55.0% |
| GGCTGAGCTCCATGTTATCG+AGG | + | tig0030729:47188-47207 | Msa1444490:CDS | 55.0% | |
| GCATGCCCCCTTGGAGATGT+TGG | - | tig0030729:44821-44840 | None:intergenic | 60.0% | |
| GGGTCAGTTATTCCGGGACG+AGG | + | tig0030729:46095-46114 | Msa1444490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030729 | gene | 40949 | 47269 | 40949 | ID=Msa1444490;Name=Msa1444490 |
| tig0030729 | mRNA | 40949 | 47269 | 40949 | ID=Msa1444490-mRNA-1;Parent=Msa1444490;Name=Msa1444490-mRNA-1;_AED=0.13;_eAED=0.14;_QI=1025|1|0.93|1|0.86|0.93|16|0|199 |
| tig0030729 | exon | 40949 | 41191 | 40949 | ID=Msa1444490-mRNA-1:exon:14481;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 41337 | 41405 | 41337 | ID=Msa1444490-mRNA-1:exon:14482;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 41499 | 41549 | 41499 | ID=Msa1444490-mRNA-1:exon:14483;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 42145 | 42279 | 42145 | ID=Msa1444490-mRNA-1:exon:14484;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 42404 | 42466 | 42404 | ID=Msa1444490-mRNA-1:exon:14485;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 43038 | 43153 | 43038 | ID=Msa1444490-mRNA-1:exon:14486;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 43559 | 43643 | 43559 | ID=Msa1444490-mRNA-1:exon:14487;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 43835 | 43894 | 43835 | ID=Msa1444490-mRNA-1:exon:14488;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 45043 | 45088 | 45043 | ID=Msa1444490-mRNA-1:exon:14489;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 45422 | 45495 | 45422 | ID=Msa1444490-mRNA-1:exon:14490;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 45833 | 45882 | 45833 | ID=Msa1444490-mRNA-1:exon:14491;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 46191 | 46391 | 46191 | ID=Msa1444490-mRNA-1:exon:14492;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 46479 | 46523 | 46479 | ID=Msa1444490-mRNA-1:exon:14493;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 46635 | 46728 | 46635 | ID=Msa1444490-mRNA-1:exon:14494;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 46890 | 47035 | 46890 | ID=Msa1444490-mRNA-1:exon:14495;Parent=Msa1444490-mRNA-1 |
| tig0030729 | exon | 47123 | 47269 | 47123 | ID=Msa1444490-mRNA-1:exon:14496;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 40949 | 41191 | 40949 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 41337 | 41405 | 41337 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 41499 | 41549 | 41499 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 42145 | 42279 | 42145 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 42404 | 42466 | 42404 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 43038 | 43153 | 43038 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 43559 | 43643 | 43559 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 43835 | 43894 | 43835 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 45043 | 45088 | 45043 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 45422 | 45495 | 45422 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 45833 | 45882 | 45833 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | five_prime_UTR | 46191 | 46223 | 46191 | ID=Msa1444490-mRNA-1:five_prime_utr;Parent=Msa1444490-mRNA-1 |
| tig0030729 | CDS | 46224 | 46391 | 46224 | ID=Msa1444490-mRNA-1:cds;Parent=Msa1444490-mRNA-1 |
| tig0030729 | CDS | 46479 | 46523 | 46479 | ID=Msa1444490-mRNA-1:cds;Parent=Msa1444490-mRNA-1 |
| tig0030729 | CDS | 46635 | 46728 | 46635 | ID=Msa1444490-mRNA-1:cds;Parent=Msa1444490-mRNA-1 |
| tig0030729 | CDS | 46890 | 47035 | 46890 | ID=Msa1444490-mRNA-1:cds;Parent=Msa1444490-mRNA-1 |
| tig0030729 | CDS | 47123 | 47269 | 47123 | ID=Msa1444490-mRNA-1:cds;Parent=Msa1444490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
