Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315490 | XP_003593966.1 | 98.977 | 391 | 4 | 0 | 1 | 391 | 1 | 391 | 0.0 | 802 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315490 | sp|Q8VY89|APC7_ARATH | 66.752 | 391 | 128 | 1 | 1 | 391 | 1 | 389 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034180 | Msa0315490 | 0.812318 | 4.503536e-51 | -8.615850e-47 |
| Msa0054820 | Msa0315490 | 0.808068 | 3.714025e-50 | -8.615850e-47 |
| Msa0081900 | Msa0315490 | 0.812504 | 4.100468e-51 | -8.615850e-47 |
| Msa0123300 | Msa0315490 | 0.801481 | 8.821042e-49 | -8.615850e-47 |
| Msa0128180 | Msa0315490 | 0.832358 | 9.895766e-56 | -8.615850e-47 |
| Msa0167850 | Msa0315490 | 0.808504 | 2.997896e-50 | -8.615850e-47 |
| Msa0174360 | Msa0315490 | 0.801156 | 1.028433e-48 | -8.615850e-47 |
| Msa0195000 | Msa0315490 | 0.818752 | 1.663275e-52 | -8.615850e-47 |
| Msa0197810 | Msa0315490 | 0.833826 | 4.267413e-56 | -8.615850e-47 |
| Msa0274670 | Msa0315490 | 0.882060 | 1.429052e-70 | -8.615850e-47 |
| Msa0284350 | Msa0315490 | 0.801484 | 8.809515e-49 | -8.615850e-47 |
| Msa0302890 | Msa0315490 | 0.809529 | 1.808496e-50 | -8.615850e-47 |
| Msa0305330 | Msa0315490 | 0.817396 | 3.370832e-52 | -8.615850e-47 |
| Msa0315490 | Msa0317740 | 0.811579 | 6.525474e-51 | -8.615850e-47 |
| Msa0315490 | Msa0318880 | 0.801250 | 9.839620e-49 | -8.615850e-47 |
| Msa0315490 | Msa0379610 | 0.828111 | 1.078074e-54 | -8.615850e-47 |
| Msa0315490 | Msa0422280 | 0.806484 | 8.043862e-50 | -8.615850e-47 |
| Msa0315490 | Msa0468800 | 0.811393 | 7.160951e-51 | -8.615850e-47 |
| Msa0315490 | Msa0559500 | 0.800307 | 1.532739e-48 | -8.615850e-47 |
| Msa0315490 | Msa0601410 | 0.802798 | 4.729229e-49 | -8.615850e-47 |
| Msa0315490 | Msa0626280 | 0.816041 | 6.782349e-52 | -8.615850e-47 |
| Msa0315490 | Msa0664570 | 0.802592 | 5.214549e-49 | -8.615850e-47 |
| Msa0315490 | Msa0685750 | 0.805805 | 1.118025e-49 | -8.615850e-47 |
| Msa0315490 | Msa0687450 | 0.807182 | 5.727810e-50 | -8.615850e-47 |
| Msa0315490 | Msa0689760 | 0.810911 | 9.107970e-51 | -8.615850e-47 |
| Msa0315490 | Msa0751260 | 0.801428 | 9.048251e-49 | -8.615850e-47 |
| Msa0315490 | Msa0800700 | 0.833168 | 6.225967e-56 | -8.615850e-47 |
| Msa0315490 | Msa0828660 | 0.809175 | 2.154686e-50 | -8.615850e-47 |
| Msa0315490 | Msa1079860 | 0.803384 | 3.577114e-49 | -8.615850e-47 |
| Msa0315490 | Msa1158310 | 0.806556 | 7.766515e-50 | -8.615850e-47 |
| Msa0315490 | Msa1332000 | 0.806164 | 9.397492e-50 | -8.615850e-47 |
| Msa0315490 | Msa1333730 | 0.808467 | 3.053135e-50 | -8.615850e-47 |
| Msa0315490 | Msa1420250 | 0.810636 | 1.044610e-50 | -8.615850e-47 |
| Msa0315490 | Msa1440740 | 0.809131 | 2.201375e-50 | -8.615850e-47 |
| Msa0315490 | Msa1444490 | 0.912234 | 2.460253e-83 | -8.615850e-47 |
| Msa0315490 | Msa1446780 | 0.804521 | 2.075583e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315490 | MtrunA17_Chr2g0286231 | 98.977 | 391 | 4 | 0 | 1 | 391 | 1 | 391 | 0.0 | 802 |
| Msa0315490 | MtrunA17_Chr1g0205411 | 26.667 | 180 | 130 | 2 | 211 | 388 | 233 | 412 | 3.35e-13 | 71.2 |
| Msa0315490 | MtrunA17_Chr8g0344341 | 25.556 | 180 | 132 | 2 | 211 | 388 | 234 | 413 | 3.50e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315490 | AT2G39090.1 | 66.752 | 391 | 128 | 1 | 1 | 391 | 1 | 389 | 0.0 | 528 |
| Msa0315490 | AT2G39090.2 | 67.268 | 388 | 125 | 1 | 1 | 388 | 1 | 386 | 0.0 | 528 |
Find 60 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATTAAGTGTGTATTATT+AGG | 0.148299 | 2_4:-11921191 | None:intergenic |
| TCTTCAACAAAATTGATTAT+TGG | 0.194580 | 2_4:-11916770 | None:intergenic |
| TTGCCGATGAATTTGTTATT+AGG | 0.211280 | 2_4:+11918795 | Msa0315490:CDS |
| ATCACCACTCTTCTCGAAAA+TGG | 0.215246 | 2_4:+11916870 | Msa0315490:CDS |
| GGAGCCCTCACACTTCTATT+TGG | 0.222284 | 2_4:-11919565 | None:intergenic |
| GTGATAGCCTCAAGTATAAA+AGG | 0.239509 | 2_4:-11919294 | None:intergenic |
| ATGAAGGTTGAAGCTATTAT+TGG | 0.261152 | 2_4:+11921559 | Msa0315490:intron |
| TTTGTTGAAGAATCACTTTC+CGG | 0.271246 | 2_4:+11916782 | Msa0315490:five_prime_UTR |
| TCCATACATCATAACATATA+TGG | 0.310210 | 2_4:+11921945 | Msa0315490:CDS |
| ATTGATAACTGATGTATTGC+AGG | 0.321031 | 2_4:-11917975 | None:intergenic |
| CCTTGGTATGTGCGTATATC+AGG | 0.328266 | 2_4:-11922447 | None:intergenic |
| TCCTATTCTGGCAGGTGGCT+TGG | 0.331842 | 2_4:+11921139 | Msa0315490:intron |
| GTATTAAGTGTGTATTATTA+GGG | 0.342297 | 2_4:-11921190 | None:intergenic |
| TATCACCGCTTTATCAGAAA+TGG | 0.352829 | 2_4:+11919311 | Msa0315490:CDS |
| GTATATCAGGTCTCAATTCT+TGG | 0.355867 | 2_4:-11922434 | None:intergenic |
| TCCATATATGTTATGATGTA+TGG | 0.364309 | 2_4:-11921946 | None:intergenic |
| AGCAGACGACATACTCTGTT+TGG | 0.371372 | 2_4:-11917912 | None:intergenic |
| GCAGCTGTGTCTGCCTTTAG+AGG | 0.397555 | 2_4:+11922408 | Msa0315490:CDS |
| GGCAAATTTCGAGCTTTGCT+TGG | 0.400434 | 2_4:-11918777 | None:intergenic |
| AGCATTATCGTATGCTGAAC+AGG | 0.402919 | 2_4:+11922110 | Msa0315490:CDS |
| GGAGTTCATTATCGTCAAAT+AGG | 0.418518 | 2_4:+11917936 | Msa0315490:CDS |
| CTCTAAGAATCAACGTTCAC+CGG | 0.425073 | 2_4:-11916801 | None:intergenic |
| TATATCAGGTCTCAATTCTT+GGG | 0.435812 | 2_4:-11922433 | None:intergenic |
| AAGGCAGACACAGCTGCTTC+CGG | 0.436700 | 2_4:-11922402 | None:intergenic |
| CAATTCTTGGGCTCCTCTAA+AGG | 0.437747 | 2_4:-11922421 | None:intergenic |
| ACTGATGTATTGCAGGAATT+CGG | 0.449754 | 2_4:-11917968 | None:intergenic |
| AACAGCAGCTCGACTATGTC+TGG | 0.452770 | 2_4:-11918835 | None:intergenic |
| CTTGAGTCAGTAGGATCAAA+TGG | 0.459954 | 2_4:-11919586 | None:intergenic |
| GAAGATTCAGCATTTGCAGC+AGG | 0.472445 | 2_4:-11917084 | None:intergenic |
| GCAGACGACATACTCTGTTT+GGG | 0.477597 | 2_4:-11917911 | None:intergenic |
| ATTTATTATTGACAATGAAA+CGG | 0.484844 | 2_4:+11922379 | Msa0315490:CDS |
| CATCATTTCATTGTTTCCGC+AGG | 0.489117 | 2_4:+11919350 | Msa0315490:CDS |
| AGAGTGGTGATTTGATCCTT+CGG | 0.499551 | 2_4:-11916858 | None:intergenic |
| ATCCTACTGACTCAAGTCGT+TGG | 0.508303 | 2_4:+11919593 | Msa0315490:CDS |
| TCACCTCAAAACTGAAAGCT+TGG | 0.513201 | 2_4:+11917110 | Msa0315490:CDS |
| TTTCCTAATAACAAATTCAT+CGG | 0.522585 | 2_4:-11918798 | None:intergenic |
| ATCAGTTATCAATGAAAATG+AGG | 0.522598 | 2_4:+11917985 | Msa0315490:CDS |
| CTATTTACAAAGAATGCCTA+AGG | 0.527178 | 2_4:+11918859 | Msa0315490:CDS |
| ATCACCGCTTTATCAGAAAT+GGG | 0.528807 | 2_4:+11919312 | Msa0315490:CDS |
| CTCTTCGATACTCTCTTTCG+CGG | 0.539617 | 2_4:-11917248 | None:intergenic |
| TGATAGCCTCAAGTATAAAA+GGG | 0.550116 | 2_4:-11919293 | None:intergenic |
| AAGAAGAATGGAAGTTCCGA+AGG | 0.552894 | 2_4:+11916842 | Msa0315490:exon |
| AACAGAGTATGTCGTCTGCT+CGG | 0.554802 | 2_4:+11917915 | Msa0315490:CDS |
| ATTATTGACAATGAAACGGC+CGG | 0.560636 | 2_4:+11922383 | Msa0315490:CDS |
| ATTACCTTCACTATGTACCC+TGG | 0.576596 | 2_4:-11922246 | None:intergenic |
| CTTAATACTTGAGATTGCAA+AGG | 0.590540 | 2_4:+11921205 | Msa0315490:CDS |
| GACTCCAAATAGAAGTGTGA+GGG | 0.597056 | 2_4:+11919561 | Msa0315490:intron |
| ATTGACGAGAGGCATATACC+AGG | 0.599836 | 2_4:+11922228 | Msa0315490:CDS |
| AGATCCCATTTCTGATAAAG+CGG | 0.626006 | 2_4:-11919316 | None:intergenic |
| ATCTCATCAAATGATTACAA+AGG | 0.644386 | 2_4:+11920797 | Msa0315490:CDS |
| GAACAAAGCAGCTCTAGTTG+AGG | 0.646708 | 2_4:+11918172 | Msa0315490:CDS |
| TATTGATCCTGCAAGACCAG+AGG | 0.647842 | 2_4:+11922041 | Msa0315490:CDS |
| TGTGTCACATCACAGATGGA+AGG | 0.648304 | 2_4:+11918750 | Msa0315490:intron |
| TATACCAGGGTACATAGTGA+AGG | 0.648445 | 2_4:+11922242 | Msa0315490:CDS |
| AGACTCCAAATAGAAGTGTG+AGG | 0.652884 | 2_4:+11919560 | Msa0315490:intron |
| TATTATTGGAAAGAATGAAG+AGG | 0.659050 | 2_4:+11921573 | Msa0315490:CDS |
| AGAGTATTCGAATTGACGAG+AGG | 0.664575 | 2_4:+11922217 | Msa0315490:intron |
| CCTGATATACGCACATACCA+AGG | 0.671979 | 2_4:+11922447 | Msa0315490:CDS |
| TTGACGAGAGGCATATACCA+GGG | 0.694048 | 2_4:+11922229 | Msa0315490:CDS |
| AGCCAACGACTTGAGTCAGT+AGG | 0.695824 | 2_4:-11919595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATCTTTTGTTATAAA+AGG | - | chr2_4:11917394-11917413 | None:intergenic | 10.0% |
| !!! | TGAACAAATATTAATTTTTA+CGG | + | chr2_4:11919819-11919838 | Msa0315490:intron | 10.0% |
| !!! | AATTTTATTGCAAAATATAT+GGG | - | chr2_4:11920516-11920535 | None:intergenic | 10.0% |
| !! | TTTCGATTCATTTATTAATT+TGG | + | chr2_4:11917006-11917025 | Msa0315490:intron | 15.0% |
| !! | TTCGATTCATTTATTAATTT+GGG | + | chr2_4:11917007-11917026 | Msa0315490:intron | 15.0% |
| !!! | ATTTTTGAAAAATGTTAATG+AGG | - | chr2_4:11918520-11918539 | None:intergenic | 15.0% |
| !! | AAATATTAAAATCTTTCTTG+TGG | + | chr2_4:11918536-11918555 | Msa0315490:intron | 15.0% |
| !! | AATATTAAAATCTTTCTTGT+GGG | + | chr2_4:11918537-11918556 | Msa0315490:intron | 15.0% |
| !!! | ATAAATTTTGCGTATTTTAT+CGG | + | chr2_4:11918694-11918713 | Msa0315490:intron | 15.0% |
| !! | TTTCTATACATGATATAATA+TGG | + | chr2_4:11920017-11920036 | Msa0315490:intron | 15.0% |
| !!! | ATTCATTTGATTTGTTAATT+TGG | + | chr2_4:11920044-11920063 | Msa0315490:intron | 15.0% |
| !! | GTTAATTGTCAAAATAAAAA+AGG | - | chr2_4:11920485-11920504 | None:intergenic | 15.0% |
| !!! | CAATTTTATTGCAAAATATA+TGG | - | chr2_4:11920517-11920536 | None:intergenic | 15.0% |
| !!! | ATTTTATTTCTTCATATACA+TGG | + | chr2_4:11920637-11920656 | Msa0315490:intron | 15.0% |
| !!! | ATGTACTTTTTGAAAATTAA+TGG | - | chr2_4:11921383-11921402 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGTGTATAAATAA+AGG | + | chr2_4:11921678-11921697 | Msa0315490:intron | 15.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | chr2_4:11921679-11921698 | Msa0315490:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr2_4:11921743-11921762 | Msa0315490:intron | 15.0% |
| !! | ATTTATTATTGACAATGAAA+CGG | + | chr2_4:11922379-11922398 | Msa0315490:CDS | 15.0% |
| !!! | GTATTGAATTCAAATTTTGA+AGG | + | chr2_4:11916702-11916721 | Msa0315490:five_prime_UTR | 20.0% |
| !! | TCTTCAACAAAATTGATTAT+TGG | - | chr2_4:11916773-11916792 | None:intergenic | 20.0% |
| !! | GAAAAAAGAAGAAGAAAAAT+AGG | - | chr2_4:11916933-11916952 | None:intergenic | 20.0% |
| !! | AAATGCGAAAAAAAAAAAGT+GGG | - | chr2_4:11916955-11916974 | None:intergenic | 20.0% |
| !!! | TTTGTGTTTTTTGAATAACA+GGG | + | chr2_4:11917042-11917061 | Msa0315490:intron | 20.0% |
| !!! | ATTTTCAACTTCTTTCTATA+AGG | - | chr2_4:11917482-11917501 | None:intergenic | 20.0% |
| !!! | AATAAGTTGAAAGTAACTTA+CGG | + | chr2_4:11917671-11917690 | Msa0315490:intron | 20.0% |
| !!! | AAGCTTTTCTGAAATATTTT+TGG | + | chr2_4:11917809-11917828 | Msa0315490:intron | 20.0% |
| !!! | AGCTTTTCTGAAATATTTTT+GGG | + | chr2_4:11917810-11917829 | Msa0315490:intron | 20.0% |
| !! | TTTATCTAATTCATGATAGT+TGG | + | chr2_4:11918022-11918041 | Msa0315490:intron | 20.0% |
| !! | TTTCCTAATAACAAATTCAT+CGG | - | chr2_4:11918801-11918820 | None:intergenic | 20.0% |
| !!! | AAATTGATTTTACAAACCTT+AGG | - | chr2_4:11918878-11918897 | None:intergenic | 20.0% |
| !! | CAAAATGCAAATTATATATG+AGG | - | chr2_4:11919112-11919131 | None:intergenic | 20.0% |
| !!! | ATGTTGTATATTTGTTGAAT+TGG | + | chr2_4:11919191-11919210 | Msa0315490:intron | 20.0% |
| !! | TTAATATATGTGAGAACAAT+GGG | - | chr2_4:11920230-11920249 | None:intergenic | 20.0% |
| !! | ATTAATATATGTGAGAACAA+TGG | - | chr2_4:11920231-11920250 | None:intergenic | 20.0% |
| !! | AGATATAAACAATCATTCTA+GGG | + | chr2_4:11920302-11920321 | Msa0315490:intron | 20.0% |
| !!! | ATTGAAGTATCTTTTGAATT+TGG | + | chr2_4:11920660-11920679 | Msa0315490:intron | 20.0% |
| !! | GTATTAAGTGTGTATTATTA+GGG | - | chr2_4:11921193-11921212 | None:intergenic | 20.0% |
| !! | AGTATTAAGTGTGTATTATT+AGG | - | chr2_4:11921194-11921213 | None:intergenic | 20.0% |
| !! | AAAAGGATGCTTATAAAAAA+GGG | - | chr2_4:11921319-11921338 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAAGTACATTGAA+AGG | + | chr2_4:11921387-11921406 | Msa0315490:intron | 20.0% |
| !!! | TTTCAAAAAGTACATTGAAA+GGG | + | chr2_4:11921388-11921407 | Msa0315490:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | chr2_4:11921680-11921699 | Msa0315490:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr2_4:11921703-11921722 | Msa0315490:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr2_4:11921776-11921795 | Msa0315490:intron | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | + | chr2_4:11921777-11921796 | Msa0315490:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr2_4:11921813-11921832 | Msa0315490:intron | 20.0% |
| !! | AAATTACATAACAAATAAGC+AGG | - | chr2_4:11921900-11921919 | None:intergenic | 20.0% |
| !!! | TGCTTATTTGTTATGTAATT+TGG | + | chr2_4:11921899-11921918 | Msa0315490:intron | 20.0% |
| !! | TTAGTAGTATTATTTAATGC+CGG | + | chr2_4:11922133-11922152 | Msa0315490:intron | 20.0% |
| !!! | TGTTTTAGTTTAGATCAAAT+AGG | + | chr2_4:11922274-11922293 | Msa0315490:intron | 20.0% |
| !!! | GTTTTAGTTTAGATCAAATA+GGG | + | chr2_4:11922275-11922294 | Msa0315490:intron | 20.0% |
| !!! | TTTTAGTTTAGATCAAATAG+GGG | + | chr2_4:11922276-11922295 | Msa0315490:intron | 20.0% |
| ! | GCAAATAGTAACACAAAAAA+GGG | - | chr2_4:11916748-11916767 | None:intergenic | 25.0% |
| ! | TGCAAATAGTAACACAAAAA+AGG | - | chr2_4:11916749-11916768 | None:intergenic | 25.0% |
| ! | CAAATGCGAAAAAAAAAAAG+TGG | - | chr2_4:11916956-11916975 | None:intergenic | 25.0% |
| !!! | GTTTGTGTTTTTTGAATAAC+AGG | + | chr2_4:11917041-11917060 | Msa0315490:intron | 25.0% |
| ! | TATATCACAGATTCTTACAA+TGG | - | chr2_4:11917274-11917293 | None:intergenic | 25.0% |
| ! | ACTAAGCTGTTTATTCAAAT+GGG | - | chr2_4:11917334-11917353 | None:intergenic | 25.0% |
| ! | AACTAAGCTGTTTATTCAAA+TGG | - | chr2_4:11917335-11917354 | None:intergenic | 25.0% |
| ! | AAGAAGTTGAAAATAGCTTA+AGG | + | chr2_4:11917488-11917507 | Msa0315490:intron | 25.0% |
| ! | AGATTATGGAAACAACTTAT+GGG | - | chr2_4:11917518-11917537 | None:intergenic | 25.0% |
| !! | TTATGTTAGTAGATTAGTTG+CGG | + | chr2_4:11917586-11917605 | Msa0315490:intron | 25.0% |
| !! | ATAAGTTGAAAGTAACTTAC+GGG | + | chr2_4:11917672-11917691 | Msa0315490:intron | 25.0% |
| ! | ATCAGTTATCAATGAAAATG+AGG | + | chr2_4:11917985-11918004 | Msa0315490:CDS | 25.0% |
| !! | TATTTTGTCAGTTTTCACTA+TGG | + | chr2_4:11918646-11918665 | Msa0315490:intron | 25.0% |
| !!! | TTGCTTTTTATCCAGAATTT+TGG | + | chr2_4:11919459-11919478 | Msa0315490:intron | 25.0% |
| ! | AATCCTTGAGAAATAACAAA+AGG | + | chr2_4:11919777-11919796 | Msa0315490:intron | 25.0% |
| ! | TATTCAGTAAAGAATCTGTT+TGG | - | chr2_4:11919944-11919963 | None:intergenic | 25.0% |
| ! | TAATATATGTGAGAACAATG+GGG | - | chr2_4:11920229-11920248 | None:intergenic | 25.0% |
| ! | GAGATATAAACAATCATTCT+AGG | + | chr2_4:11920301-11920320 | Msa0315490:intron | 25.0% |
| ! | AATGTCAATTGAACACTTAA+AGG | - | chr2_4:11920446-11920465 | None:intergenic | 25.0% |
| ! | AAGATAATGACCATAAAAAC+AGG | + | chr2_4:11920598-11920617 | Msa0315490:intron | 25.0% |
| ! | ATCTCATCAAATGATTACAA+AGG | + | chr2_4:11920797-11920816 | Msa0315490:CDS | 25.0% |
| ! | TGAGATATTACATTGTACAT+GGG | + | chr2_4:11920820-11920839 | Msa0315490:intron | 25.0% |
| ! | TTGTATGATTAAATGTGTGA+TGG | + | chr2_4:11920844-11920863 | Msa0315490:intron | 25.0% |
| ! | ACTTTAGATGTGAGAAAAAT+TGG | - | chr2_4:11920927-11920946 | None:intergenic | 25.0% |
| ! | CAAAAGGATGCTTATAAAAA+AGG | - | chr2_4:11921320-11921339 | None:intergenic | 25.0% |
| !! | TTCAAAAAGTACATTGAAAG+GGG | + | chr2_4:11921389-11921408 | Msa0315490:intron | 25.0% |
| ! | CATGTTAAATGAACAATTTG+AGG | - | chr2_4:11921517-11921536 | None:intergenic | 25.0% |
| ! | CTGATGTATATTGTAAATGA+AGG | + | chr2_4:11921543-11921562 | Msa0315490:intron | 25.0% |
| ! | TATTATTGGAAAGAATGAAG+AGG | + | chr2_4:11921573-11921592 | Msa0315490:CDS | 25.0% |
| !! | TACCTTTTCAAAATTCGTAA+TGG | - | chr2_4:11921599-11921618 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr2_4:11921702-11921721 | Msa0315490:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr2_4:11921812-11921831 | Msa0315490:intron | 25.0% |
| ! | TTATGTAATTTGGCAATTAC+AGG | + | chr2_4:11921909-11921928 | Msa0315490:intron | 25.0% |
| ! | TCCATACATCATAACATATA+TGG | + | chr2_4:11921945-11921964 | Msa0315490:CDS | 25.0% |
| ! | TCCATATATGTTATGATGTA+TGG | - | chr2_4:11921949-11921968 | None:intergenic | 25.0% |
| ! | ATGATATAATTCAATCCATC+CGG | - | chr2_4:11922155-11922174 | None:intergenic | 25.0% |
| !! | TGACAAGTTGAGTTTATTTA+GGG | + | chr2_4:11922354-11922373 | Msa0315490:intron | 25.0% |
| !!! | TACCAAGGTTTATTTTTTAC+TGG | + | chr2_4:11922462-11922481 | Msa0315490:CDS | 25.0% |
| ! | ATCCAGTAAAAAATAAACCT+TGG | - | chr2_4:11922467-11922486 | None:intergenic | 25.0% |
| TTTGTTGAAGAATCACTTTC+CGG | + | chr2_4:11916782-11916801 | Msa0315490:five_prime_UTR | 30.0% | |
| !!! | AAATAGGTTTTGAACTTACG+AGG | - | chr2_4:11916917-11916936 | None:intergenic | 30.0% |
| !!! | TGAAGTTATTTTTTGTGTGC+AGG | + | chr2_4:11917203-11917222 | Msa0315490:intron | 30.0% |
| GAGATTATGGAAACAACTTA+TGG | - | chr2_4:11917519-11917538 | None:intergenic | 30.0% | |
| !! | CTTTCTTTTGATTATGCAGT+TGG | + | chr2_4:11917621-11917640 | Msa0315490:intron | 30.0% |
| CCTAGTAAACACATAATCAA+TGG | - | chr2_4:11917781-11917800 | None:intergenic | 30.0% | |
| ! | CCATTGATTATGTGTTTACT+AGG | + | chr2_4:11917778-11917797 | Msa0315490:intron | 30.0% |
| ! | ATATGTGTGCTGTTCATAAA+CGG | - | chr2_4:11917861-11917880 | None:intergenic | 30.0% |
| ! | ATTGATAACTGATGTATTGC+AGG | - | chr2_4:11917978-11917997 | None:intergenic | 30.0% |
| CTAATTCATGATAGTTGGAT+TGG | + | chr2_4:11918027-11918046 | Msa0315490:intron | 30.0% | |
| !! | TGGTTTTTGCTGTAGTTTTA+AGG | + | chr2_4:11918047-11918066 | Msa0315490:intron | 30.0% |
| !!! | GGTTTTTGCTGTAGTTTTAA+GGG | + | chr2_4:11918048-11918067 | Msa0315490:intron | 30.0% |
| AAACATCATAAACAACCTGT+AGG | - | chr2_4:11918083-11918102 | None:intergenic | 30.0% | |
| AAAGAGATCAGAGAACAAAA+AGG | - | chr2_4:11918106-11918125 | None:intergenic | 30.0% | |
| CAAGTTGTTTATCCAAGTAA+GGG | - | chr2_4:11918236-11918255 | None:intergenic | 30.0% | |
| ! | TCAAGTTGTTTATCCAAGTA+AGG | - | chr2_4:11918237-11918256 | None:intergenic | 30.0% |
| CAAGTTATCTTGAGAATGTT+TGG | + | chr2_4:11918364-11918383 | Msa0315490:intron | 30.0% | |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr2_4:11918388-11918407 | Msa0315490:intron | 30.0% | |
| ACTAAACACTCTTGAATCTA+AGG | - | chr2_4:11918492-11918511 | None:intergenic | 30.0% | |
| !! | AATGCTGATTCCAATGTATA+TGG | + | chr2_4:11918578-11918597 | Msa0315490:intron | 30.0% |
| !! | ATGCTGATTCCAATGTATAT+GGG | + | chr2_4:11918579-11918598 | Msa0315490:intron | 30.0% |
| ATACAGAGTACAGTCATTTA+AGG | - | chr2_4:11918627-11918646 | None:intergenic | 30.0% | |
| !! | TTGCCGATGAATTTGTTATT+AGG | + | chr2_4:11918795-11918814 | Msa0315490:CDS | 30.0% |
| CTATTTACAAAGAATGCCTA+AGG | + | chr2_4:11918859-11918878 | Msa0315490:CDS | 30.0% | |
| AATCCATGACAGCATTTAAA+GGG | - | chr2_4:11918941-11918960 | None:intergenic | 30.0% | |
| ! | AGGTTTAAGATGATATGTCT+AGG | - | chr2_4:11919092-11919111 | None:intergenic | 30.0% |
| TGATAGCCTCAAGTATAAAA+GGG | - | chr2_4:11919296-11919315 | None:intergenic | 30.0% | |
| TACAAATCGATCCAAAATTC+TGG | - | chr2_4:11919473-11919492 | None:intergenic | 30.0% | |
| ATGCTCTCCAAGAATATAAT+TGG | + | chr2_4:11919518-11919537 | Msa0315490:intron | 30.0% | |
| TTGTGCACCAATTATATTCT+TGG | - | chr2_4:11919528-11919547 | None:intergenic | 30.0% | |
| ! | TATTTGGAGTCTGAAATTTG+AGG | - | chr2_4:11919552-11919571 | None:intergenic | 30.0% |
| !! | TTTTGCTTGTTACGACAAAT+TGG | + | chr2_4:11919695-11919714 | Msa0315490:intron | 30.0% |
| !!! | TCACCTTTTGTTATTTCTCA+AGG | - | chr2_4:11919783-11919802 | None:intergenic | 30.0% |
| GGACTATTTCAATGATTTCA+TGG | + | chr2_4:11919840-11919859 | Msa0315490:intron | 30.0% | |
| AATATATGTGAGAACAATGG+GGG | - | chr2_4:11920228-11920247 | None:intergenic | 30.0% | |
| !! | CTTAAAACCTTCAAGTTGAA+AGG | + | chr2_4:11920255-11920274 | Msa0315490:intron | 30.0% |
| TAAACAGCCTAAAAACTGTT+AGG | + | chr2_4:11920331-11920350 | Msa0315490:intron | 30.0% | |
| ! | AGACTATCCTAACAGTTTTT+AGG | - | chr2_4:11920341-11920360 | None:intergenic | 30.0% |
| !!! | TTTTTCCATGCCTGTTTTTA+TGG | - | chr2_4:11920611-11920630 | None:intergenic | 30.0% |
| GTGAGATATTACATTGTACA+TGG | + | chr2_4:11920819-11920838 | Msa0315490:intron | 30.0% | |
| GAGATATTACATTGTACATG+GGG | + | chr2_4:11920821-11920840 | Msa0315490:intron | 30.0% | |
| ! | TTGCTAAAACATCTTTTCGA+TGG | + | chr2_4:11920882-11920901 | Msa0315490:intron | 30.0% |
| !! | GTGAGAAAAATTGGTCTTAA+GGG | - | chr2_4:11920918-11920937 | None:intergenic | 30.0% |
| !! | TGTGAGAAAAATTGGTCTTA+AGG | - | chr2_4:11920919-11920938 | None:intergenic | 30.0% |
| TTGATCAAAACAAGAGAACA+AGG | - | chr2_4:11921007-11921026 | None:intergenic | 30.0% | |
| ! | TTTGACTTTGTTTCCTATTC+TGG | + | chr2_4:11921127-11921146 | Msa0315490:intron | 30.0% |
| CTTAATACTTGAGATTGCAA+AGG | + | chr2_4:11921205-11921224 | Msa0315490:CDS | 30.0% | |
| ! | CACTCTTTTGTACTTACAAA+AGG | - | chr2_4:11921336-11921355 | None:intergenic | 30.0% |
| CTTATTAAAAGAGACAGAGA+TGG | + | chr2_4:11921356-11921375 | Msa0315490:intron | 30.0% | |
| ! | TCTTTCGTGCAATTAACTTT+TGG | - | chr2_4:11921428-11921447 | None:intergenic | 30.0% |
| ATGAAGGTTGAAGCTATTAT+TGG | + | chr2_4:11921559-11921578 | Msa0315490:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr2_4:11921687-11921706 | Msa0315490:intron | 30.0% | |
| !!! | TTGAAATGGGTCAGTTTTTT+TGG | + | chr2_4:11921790-11921809 | Msa0315490:intron | 30.0% |
| !!! | TGAAATGGGTCAGTTTTTTT+GGG | + | chr2_4:11921791-11921810 | Msa0315490:intron | 30.0% |
| ACATAACAAATAAGCAGGAT+GGG | - | chr2_4:11921895-11921914 | None:intergenic | 30.0% | |
| TACATAACAAATAAGCAGGA+TGG | - | chr2_4:11921896-11921915 | None:intergenic | 30.0% | |
| TAGTATTATTTAATGCCGGA+TGG | + | chr2_4:11922137-11922156 | Msa0315490:intron | 30.0% | |
| ! | CTGACAAGTTGAGTTTATTT+AGG | + | chr2_4:11922353-11922372 | Msa0315490:intron | 30.0% |
| TATATCAGGTCTCAATTCTT+GGG | - | chr2_4:11922436-11922455 | None:intergenic | 30.0% | |
| ! | CAATACTCTCTTCGTTTTGA+CGG | - | chr2_4:11916688-11916707 | None:intergenic | 35.0% |
| !! | AAAGCGCTTTTGAAGAAGAA+TGG | + | chr2_4:11916830-11916849 | Msa0315490:exon | 35.0% |
| ! | TTTTGAACTTACGAGGATCT+GGG | - | chr2_4:11916910-11916929 | None:intergenic | 35.0% |
| ! | ATACCAAGCTTTCAGTTTTG+AGG | - | chr2_4:11917116-11917135 | None:intergenic | 35.0% |
| ACAACTTATGGGAGAGATTA+TGG | - | chr2_4:11917532-11917551 | None:intergenic | 35.0% | |
| CAGTTGGAAACAATGTTAGT+AGG | + | chr2_4:11917637-11917656 | Msa0315490:intron | 35.0% | |
| AGACTGTTTGTGAGAGTTTA+TGG | - | chr2_4:11917704-11917723 | None:intergenic | 35.0% | |
| GGAGTTCATTATCGTCAAAT+AGG | + | chr2_4:11917936-11917955 | Msa0315490:CDS | 35.0% | |
| ACTGATGTATTGCAGGAATT+CGG | - | chr2_4:11917971-11917990 | None:intergenic | 35.0% | |
| TGTTCTCTGATCTCTTTAAC+AGG | + | chr2_4:11918109-11918128 | Msa0315490:intron | 35.0% | |
| ! | TCCACTCCTCTTTTATAGTT+TGG | + | chr2_4:11918209-11918228 | Msa0315490:intron | 35.0% |
| TCCAAACTATAAAAGAGGAG+TGG | - | chr2_4:11918213-11918232 | None:intergenic | 35.0% | |
| AAGGGTCCAAACTATAAAAG+AGG | - | chr2_4:11918218-11918237 | None:intergenic | 35.0% | |
| TTATAGTTTGGACCCTTACT+TGG | + | chr2_4:11918221-11918240 | Msa0315490:intron | 35.0% | |
| ACGAACACTTGTAAGAAAAG+CGG | - | chr2_4:11918279-11918298 | None:intergenic | 35.0% | |
| !!! | GTGGGTATATTTTGATGCAA+AGG | + | chr2_4:11918555-11918574 | Msa0315490:intron | 35.0% |
| !! | TGCTGATTCCAATGTATATG+GGG | + | chr2_4:11918580-11918599 | Msa0315490:intron | 35.0% |
| !! | TTTAAGGCCAATTTTCTCCA+TGG | - | chr2_4:11918611-11918630 | None:intergenic | 35.0% |
| ATCCATGACAGCATTTAAAG+GGG | - | chr2_4:11918940-11918959 | None:intergenic | 35.0% | |
| GAATCCATGACAGCATTTAA+AGG | - | chr2_4:11918942-11918961 | None:intergenic | 35.0% | |
| GTGTTATCAGTTCATTCATG+AGG | - | chr2_4:11919006-11919025 | None:intergenic | 35.0% | |
| TTCAATGTTCGTCCATTCAA+CGG | + | chr2_4:11919046-11919065 | Msa0315490:intron | 35.0% | |
| AAGTATAAAAGGGCAATGTC+TGG | - | chr2_4:11919286-11919305 | None:intergenic | 35.0% | |
| ! | ACATTGCCCTTTTATACTTG+AGG | + | chr2_4:11919287-11919306 | Msa0315490:CDS | 35.0% |
| GTGATAGCCTCAAGTATAAA+AGG | - | chr2_4:11919297-11919316 | None:intergenic | 35.0% | |
| TATCACCGCTTTATCAGAAA+TGG | + | chr2_4:11919311-11919330 | Msa0315490:CDS | 35.0% | |
| ATCACCGCTTTATCAGAAAT+GGG | + | chr2_4:11919312-11919331 | Msa0315490:CDS | 35.0% | |
| AGATCCCATTTCTGATAAAG+CGG | - | chr2_4:11919319-11919338 | None:intergenic | 35.0% | |
| TCTACTGTTTATCAGCTTAG+AGG | + | chr2_4:11919671-11919690 | Msa0315490:intron | 35.0% | |
| ATGTGGTATATATGCTATGC+TGG | - | chr2_4:11919755-11919774 | None:intergenic | 35.0% | |
| AGCATAGCATATATACCACA+TGG | + | chr2_4:11919754-11919773 | Msa0315490:intron | 35.0% | |
| TATTTCTCAAGGATTCCATG+TGG | - | chr2_4:11919772-11919791 | None:intergenic | 35.0% | |
| GAAATAACAAAAGGTGACTG+CGG | + | chr2_4:11919786-11919805 | Msa0315490:intron | 35.0% | |
| AAATAACAAAAGGTGACTGC+GGG | + | chr2_4:11919787-11919806 | Msa0315490:intron | 35.0% | |
| ! | AGCGAACAACTTAAGCTTTT+GGG | + | chr2_4:11920129-11920148 | Msa0315490:intron | 35.0% |
| AGTTCAAACTGTCAATCACT+CGG | - | chr2_4:11920192-11920211 | None:intergenic | 35.0% | |
| GCAAAATCCTTTCAACTTGA+AGG | - | chr2_4:11920265-11920284 | None:intergenic | 35.0% | |
| ! | AGTTGAAAGGATTTTGCATG+AGG | + | chr2_4:11920268-11920287 | Msa0315490:intron | 35.0% |
| TATTTCCACTGGTGTTTCTT+AGG | + | chr2_4:11920402-11920421 | Msa0315490:intron | 35.0% | |
| AATGACCATAAAAACAGGCA+TGG | + | chr2_4:11920603-11920622 | Msa0315490:intron | 35.0% | |
| ATTTGGCATCATCTGTTTCA+TGG | + | chr2_4:11920677-11920696 | Msa0315490:intron | 35.0% | |
| ! | GGATTGTGTTTTATATTGCC+CGG | + | chr2_4:11920698-11920717 | Msa0315490:intron | 35.0% |
| CAGAATTTGCCAAGTTTCAA+GGG | - | chr2_4:11920728-11920747 | None:intergenic | 35.0% | |
| TCAGAATTTGCCAAGTTTCA+AGG | - | chr2_4:11920729-11920748 | None:intergenic | 35.0% | |
| GCTTATAAAAAAGGGATGGA+GGG | - | chr2_4:11921311-11921330 | None:intergenic | 35.0% | |
| TGCTTATAAAAAAGGGATGG+AGG | - | chr2_4:11921312-11921331 | None:intergenic | 35.0% | |
| GGATGCTTATAAAAAAGGGA+TGG | - | chr2_4:11921315-11921334 | None:intergenic | 35.0% | |
| !! | GGCCATTACGAATTTTGAAA+AGG | + | chr2_4:11921594-11921613 | Msa0315490:CDS | 35.0% |
| CAAAGTAGGTCAATTATACC+GGG | - | chr2_4:11921643-11921662 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | chr2_4:11921644-11921663 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | chr2_4:11921657-11921676 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr2_4:11921826-11921845 | Msa0315490:intron | 35.0% | |
| !! | TTGTGGCTCTATCTGTTTTA+TGG | + | chr2_4:11922067-11922086 | Msa0315490:CDS | 35.0% |
| !! | TGTGGCTCTATCTGTTTTAT+GGG | + | chr2_4:11922068-11922087 | Msa0315490:CDS | 35.0% |
| ! | CTCTATCTGTTTTATGGGAA+AGG | + | chr2_4:11922073-11922092 | Msa0315490:CDS | 35.0% |
| ATTATTGACAATGAAACGGC+CGG | + | chr2_4:11922383-11922402 | Msa0315490:CDS | 35.0% | |
| GTATATCAGGTCTCAATTCT+TGG | - | chr2_4:11922437-11922456 | None:intergenic | 35.0% | |
| ! | CTCTAAGAATCAACGTTCAC+CGG | - | chr2_4:11916804-11916823 | None:intergenic | 40.0% |
| AAGAAGAATGGAAGTTCCGA+AGG | + | chr2_4:11916842-11916861 | Msa0315490:exon | 40.0% | |
| AGAGTGGTGATTTGATCCTT+CGG | - | chr2_4:11916861-11916880 | None:intergenic | 40.0% | |
| ATCACCACTCTTCTCGAAAA+TGG | + | chr2_4:11916870-11916889 | Msa0315490:CDS | 40.0% | |
| !! | GTTTTGAACTTACGAGGATC+TGG | - | chr2_4:11916911-11916930 | None:intergenic | 40.0% |
| !!! | AAGCTTTCAGTTTTGAGGTG+AGG | - | chr2_4:11917111-11917130 | None:intergenic | 40.0% |
| TCACCTCAAAACTGAAAGCT+TGG | + | chr2_4:11917110-11917129 | Msa0315490:CDS | 40.0% | |
| AAACTGCTTGGGAGAGATTA+TGG | - | chr2_4:11917557-11917576 | None:intergenic | 40.0% | |
| AAGCACTTACGAAACTGCTT+GGG | - | chr2_4:11917568-11917587 | None:intergenic | 40.0% | |
| TAAGCACTTACGAAACTGCT+TGG | - | chr2_4:11917569-11917588 | None:intergenic | 40.0% | |
| ! | CATAATCAATGGAGCTTGCT+AGG | - | chr2_4:11917770-11917789 | None:intergenic | 40.0% |
| CTGAAAACAGCTTATGGACA+CGG | + | chr2_4:11918394-11918413 | Msa0315490:intron | 40.0% | |
| GAACTTGTGAGACTGTTTGA+GGG | - | chr2_4:11918428-11918447 | None:intergenic | 40.0% | |
| AGAACTTGTGAGACTGTTTG+AGG | - | chr2_4:11918429-11918448 | None:intergenic | 40.0% | |
| ! | TCTTGAATCTAAGGTCTGTC+TGG | - | chr2_4:11918483-11918502 | None:intergenic | 40.0% |
| TGGACAATCCCCATATACAT+TGG | - | chr2_4:11918591-11918610 | None:intergenic | 40.0% | |
| ATGTATATGGGGATTGTCCA+TGG | + | chr2_4:11918591-11918610 | Msa0315490:intron | 40.0% | |
| GGATTGTCCATGGAGAAAAT+TGG | + | chr2_4:11918601-11918620 | Msa0315490:intron | 40.0% | |
| TGTGACACAAACAACTCATG+AGG | - | chr2_4:11918739-11918758 | None:intergenic | 40.0% | |
| TGTTTGTGTCACATCACAGA+TGG | + | chr2_4:11918746-11918765 | Msa0315490:intron | 40.0% | |
| CAGCATTTAAAGGGGAATGT+TGG | - | chr2_4:11918932-11918951 | None:intergenic | 40.0% | |
| TTCCCCTTTAAATGCTGTCA+TGG | + | chr2_4:11918935-11918954 | Msa0315490:intron | 40.0% | |
| TCATTCATGAGGATGCTAGT+GGG | - | chr2_4:11918995-11919014 | None:intergenic | 40.0% | |
| TTCATTCATGAGGATGCTAG+TGG | - | chr2_4:11918996-11919015 | None:intergenic | 40.0% | |
| !! | AAACATAAGGCACCGTTGAA+TGG | - | chr2_4:11919061-11919080 | None:intergenic | 40.0% |
| ! | TCAACGGTGCCTTATGTTTT+TGG | + | chr2_4:11919062-11919081 | Msa0315490:intron | 40.0% |
| CTAGGACAGCCAAAAACATA+AGG | - | chr2_4:11919074-11919093 | None:intergenic | 40.0% | |
| TGACTGCTTGCTTTCACTTT+AGG | + | chr2_4:11919157-11919176 | Msa0315490:intron | 40.0% | |
| CATCATTTCATTGTTTCCGC+AGG | + | chr2_4:11919350-11919369 | Msa0315490:CDS | 40.0% | |
| CTGAATCAACAACAAACCTG+CGG | - | chr2_4:11919369-11919388 | None:intergenic | 40.0% | |
| !! | TTTGTTGTTGATTCAGCCCT+TGG | + | chr2_4:11919373-11919392 | Msa0315490:intron | 40.0% |
| AGACCAACGGATCATATTGA+GGG | - | chr2_4:11919402-11919421 | None:intergenic | 40.0% | |
| ! | AGACTCCAAATAGAAGTGTG+AGG | + | chr2_4:11919560-11919579 | Msa0315490:intron | 40.0% |
| ! | GACTCCAAATAGAAGTGTGA+GGG | + | chr2_4:11919561-11919580 | Msa0315490:intron | 40.0% |
| CTTGAGTCAGTAGGATCAAA+TGG | - | chr2_4:11919589-11919608 | None:intergenic | 40.0% | |
| CGTATTGAGCTTGACAAGTT+TGG | + | chr2_4:11919874-11919893 | Msa0315490:intron | 40.0% | |
| !! | CTGCATCATGAAACTTGTTG+CGG | + | chr2_4:11920097-11920116 | Msa0315490:intron | 40.0% |
| ! | AAGCTTAAGTTGTTCGCTGT+AGG | - | chr2_4:11920127-11920146 | None:intergenic | 40.0% |
| ! | CAGCGAACAACTTAAGCTTT+TGG | + | chr2_4:11920128-11920147 | Msa0315490:intron | 40.0% |
| ACTCGTTGTGATATTTCCAC+TGG | + | chr2_4:11920391-11920410 | Msa0315490:intron | 40.0% | |
| AATGTACACCAACATCTCCA+AGG | + | chr2_4:11920539-11920558 | Msa0315490:intron | 40.0% | |
| ATGTACACCAACATCTCCAA+GGG | + | chr2_4:11920540-11920559 | Msa0315490:intron | 40.0% | |
| ! | TAAATGTGTGATGGAGCTGT+AGG | + | chr2_4:11920853-11920872 | Msa0315490:intron | 40.0% |
| ! | ACTTTGTTTCCTATTCTGGC+AGG | + | chr2_4:11921131-11921150 | Msa0315490:intron | 40.0% |
| CCGGTATAATTGACCTACTT+TGG | + | chr2_4:11921641-11921660 | Msa0315490:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr2_4:11921827-11921846 | Msa0315490:intron | 40.0% | |
| AGCATTATCGTATGCTGAAC+AGG | + | chr2_4:11922110-11922129 | Msa0315490:CDS | 40.0% | |
| ! | AGAGTATTCGAATTGACGAG+AGG | + | chr2_4:11922217-11922236 | Msa0315490:intron | 40.0% |
| TATACCAGGGTACATAGTGA+AGG | + | chr2_4:11922242-11922261 | Msa0315490:CDS | 40.0% | |
| ATTACCTTCACTATGTACCC+TGG | - | chr2_4:11922249-11922268 | None:intergenic | 40.0% | |
| !! | GAGTCCATTTTCGAGAAGAG+TGG | - | chr2_4:11916877-11916896 | None:intergenic | 45.0% |
| GAAGATTCAGCATTTGCAGC+AGG | - | chr2_4:11917087-11917106 | None:intergenic | 45.0% | |
| !!! | TTTTGTGTGCAGGTGCTACT+TGG | + | chr2_4:11917213-11917232 | Msa0315490:intron | 45.0% |
| CTCTTCGATACTCTCTTTCG+CGG | - | chr2_4:11917251-11917270 | None:intergenic | 45.0% | |
| TCTCACAAGCGCTTATGTCT+CGG | + | chr2_4:11917721-11917740 | Msa0315490:intron | 45.0% | |
| GCAGACGACATACTCTGTTT+GGG | - | chr2_4:11917914-11917933 | None:intergenic | 45.0% | |
| AGCAGACGACATACTCTGTT+TGG | - | chr2_4:11917915-11917934 | None:intergenic | 45.0% | |
| AACAGAGTATGTCGTCTGCT+CGG | + | chr2_4:11917915-11917934 | Msa0315490:CDS | 45.0% | |
| TAAGGGTTTGCATGTCCTAC+AGG | + | chr2_4:11918065-11918084 | Msa0315490:intron | 45.0% | |
| ! | GAACAAAGCAGCTCTAGTTG+AGG | + | chr2_4:11918172-11918191 | Msa0315490:CDS | 45.0% |
| TGTGTCACATCACAGATGGA+AGG | + | chr2_4:11918750-11918769 | Msa0315490:intron | 45.0% | |
| GGCAAATTTCGAGCTTTGCT+TGG | - | chr2_4:11918780-11918799 | None:intergenic | 45.0% | |
| CGCAGAATGAACCTTTGATG+TGG | + | chr2_4:11918904-11918923 | Msa0315490:intron | 45.0% | |
| !! | GAATGTTGGTGCCACATCAA+AGG | - | chr2_4:11918918-11918937 | None:intergenic | 45.0% |
| CATTCATGAGGATGCTAGTG+GGG | - | chr2_4:11918994-11919013 | None:intergenic | 45.0% | |
| ATCATATTGAGGGTGGCCAA+GGG | - | chr2_4:11919392-11919411 | None:intergenic | 45.0% | |
| GAGACCAACGGATCATATTG+AGG | - | chr2_4:11919403-11919422 | None:intergenic | 45.0% | |
| !! | ATCCTACTGACTCAAGTCGT+TGG | + | chr2_4:11919593-11919612 | Msa0315490:CDS | 45.0% |
| GTACCAATTCTCTTGCCATG+CGG | + | chr2_4:11919980-11919999 | Msa0315490:intron | 45.0% | |
| AACAAAGAACACCAACCGCA+TGG | - | chr2_4:11919998-11920017 | None:intergenic | 45.0% | |
| TGTCAATCACTCGGTTAGAG+AGG | - | chr2_4:11920183-11920202 | None:intergenic | 45.0% | |
| TTCGACCTAAGAAACACCAG+TGG | - | chr2_4:11920410-11920429 | None:intergenic | 45.0% | |
| TGTACACCAACATCTCCAAG+GGG | + | chr2_4:11920541-11920560 | Msa0315490:intron | 45.0% | |
| ATATAGAATGCATGCCCCCT+TGG | - | chr2_4:11920559-11920578 | None:intergenic | 45.0% | |
| ! | CCAAGTTTCAAGGGTTTTCC+GGG | - | chr2_4:11920719-11920738 | None:intergenic | 45.0% |
| ! | GCCAAGTTTCAAGGGTTTTC+CGG | - | chr2_4:11920720-11920739 | None:intergenic | 45.0% |
| TTGTTTCCTATTCTGGCAGG+TGG | + | chr2_4:11921134-11921153 | Msa0315490:intron | 45.0% | |
| AAGTTATACTACCTCCGTCC+CGG | + | chr2_4:11921622-11921641 | Msa0315490:intron | 45.0% | |
| GTAGGTCAATTATACCGGGA+CGG | - | chr2_4:11921639-11921658 | None:intergenic | 45.0% | |
| TATTGATCCTGCAAGACCAG+AGG | + | chr2_4:11922041-11922060 | Msa0315490:CDS | 45.0% | |
| !! | ACAAAAACCTCTGGTCTTGC+AGG | - | chr2_4:11922051-11922070 | None:intergenic | 45.0% |
| ! | TGCAAGACCAGAGGTTTTTG+TGG | + | chr2_4:11922050-11922069 | Msa0315490:CDS | 45.0% |
| GATAGAGCCACAAAAACCTC+TGG | - | chr2_4:11922060-11922079 | None:intergenic | 45.0% | |
| ! | ATTGACGAGAGGCATATACC+AGG | + | chr2_4:11922228-11922247 | Msa0315490:CDS | 45.0% |
| ! | TTGACGAGAGGCATATACCA+GGG | + | chr2_4:11922229-11922248 | Msa0315490:CDS | 45.0% |
| CAATTCTTGGGCTCCTCTAA+AGG | - | chr2_4:11922424-11922443 | None:intergenic | 45.0% | |
| CCTTGGTATGTGCGTATATC+AGG | - | chr2_4:11922450-11922469 | None:intergenic | 45.0% | |
| CCTGATATACGCACATACCA+AGG | + | chr2_4:11922447-11922466 | Msa0315490:CDS | 45.0% | |
| !! | ATTTATTATTAAATTACTAT+TGG | + | chr2_4:11919230-11919249 | Msa0315490:intron | 5.0% |
| AACAGCAGCTCGACTATGTC+TGG | - | chr2_4:11918838-11918857 | None:intergenic | 50.0% | |
| GATCATATTGAGGGTGGCCA+AGG | - | chr2_4:11919393-11919412 | None:intergenic | 50.0% | |
| CCAACGGATCATATTGAGGG+TGG | - | chr2_4:11919399-11919418 | None:intergenic | 50.0% | |
| CCACCCTCAATATGATCCGT+TGG | + | chr2_4:11919396-11919415 | Msa0315490:intron | 50.0% | |
| CCAATTCGCTAGGAGACCAA+CGG | - | chr2_4:11919415-11919434 | None:intergenic | 50.0% | |
| ! | CGTTGGTCTCCTAGCGAATT+GGG | + | chr2_4:11919413-11919432 | Msa0315490:intron | 50.0% |
| ! | GTTGGTCTCCTAGCGAATTG+GGG | + | chr2_4:11919414-11919433 | Msa0315490:intron | 50.0% |
| TTGGTCTCCTAGCGAATTGG+GGG | + | chr2_4:11919415-11919434 | Msa0315490:intron | 50.0% | |
| CTAAAAGCCCCCAATTCGCT+AGG | - | chr2_4:11919425-11919444 | None:intergenic | 50.0% | |
| GGAGCCCTCACACTTCTATT+TGG | - | chr2_4:11919568-11919587 | None:intergenic | 50.0% | |
| AGCCAACGACTTGAGTCAGT+AGG | - | chr2_4:11919598-11919617 | None:intergenic | 50.0% | |
| CAACCGCATGGCAAGAGAAT+TGG | - | chr2_4:11919986-11920005 | None:intergenic | 50.0% | |
| CAATTCTCTTGCCATGCGGT+TGG | + | chr2_4:11919984-11920003 | Msa0315490:intron | 50.0% | |
| TGAGAACAATGGGGGAAGCA+AGG | - | chr2_4:11920220-11920239 | None:intergenic | 50.0% | |
| GTACACCAACATCTCCAAGG+GGG | + | chr2_4:11920542-11920561 | Msa0315490:intron | 50.0% | |
| CCCGGAAAACCCTTGAAACT+TGG | + | chr2_4:11920716-11920735 | Msa0315490:intron | 50.0% | |
| !! | AACGTAGCGCTGGCAAGTAA+AGG | - | chr2_4:11920762-11920781 | None:intergenic | 50.0% |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr2_4:11921831-11921850 | Msa0315490:intron | 50.0% | |
| ATAAACTACTCCCTCCGTCC+CGG | - | chr2_4:11921848-11921867 | None:intergenic | 50.0% | |
| ! | CCGTTGGTCTCCTAGCGAAT+TGG | + | chr2_4:11919412-11919431 | Msa0315490:intron | 55.0% |
| ACTGAGCTTCAACGTAGCGC+TGG | - | chr2_4:11920772-11920791 | None:intergenic | 55.0% | |
| TCCTATTCTGGCAGGTGGCT+TGG | + | chr2_4:11921139-11921158 | Msa0315490:intron | 55.0% | |
| TCCAAGCCACCTGCCAGAAT+AGG | - | chr2_4:11921143-11921162 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | chr2_4:11921636-11921655 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr2_4:11921835-11921854 | Msa0315490:intron | 55.0% | |
| AAGGCAGACACAGCTGCTTC+CGG | - | chr2_4:11922405-11922424 | None:intergenic | 55.0% | |
| GCAGCTGTGTCTGCCTTTAG+AGG | + | chr2_4:11922408-11922427 | Msa0315490:CDS | 55.0% | |
| GCATGCCCCCTTGGAGATGT+TGG | - | chr2_4:11920550-11920569 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr2_4:11921834-11921853 | Msa0315490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 11916677 | 11922488 | 11916677 | ID=Msa0315490;Name=Msa0315490 |
| chr2_4 | mRNA | 11916677 | 11922488 | 11916677 | ID=Msa0315490-mRNA-1;Parent=Msa0315490;Name=Msa0315490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=172|1|0.92|1|1|1|14|0|392 |
| chr2_4 | exon | 11916677 | 11916917 | 11916677 | ID=Msa0315490-mRNA-1:exon:4545;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11917063 | 11917131 | 11917063 | ID=Msa0315490-mRNA-1:exon:4546;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11917225 | 11917275 | 11917225 | ID=Msa0315490-mRNA-1:exon:4547;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11917872 | 11918006 | 11917872 | ID=Msa0315490-mRNA-1:exon:4548;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11918131 | 11918193 | 11918131 | ID=Msa0315490-mRNA-1:exon:4549;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11918765 | 11918880 | 11918765 | ID=Msa0315490-mRNA-1:exon:4550;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11919287 | 11919371 | 11919287 | ID=Msa0315490-mRNA-1:exon:4551;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11919562 | 11919621 | 11919562 | ID=Msa0315490-mRNA-1:exon:4552;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11920773 | 11920818 | 11920773 | ID=Msa0315490-mRNA-1:exon:4553;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11921153 | 11921226 | 11921153 | ID=Msa0315490-mRNA-1:exon:4554;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11921565 | 11921615 | 11921565 | ID=Msa0315490-mRNA-1:exon:4555;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11921931 | 11922131 | 11921931 | ID=Msa0315490-mRNA-1:exon:4556;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11922219 | 11922263 | 11922219 | ID=Msa0315490-mRNA-1:exon:4557;Parent=Msa0315490-mRNA-1 |
| chr2_4 | exon | 11922375 | 11922488 | 11922375 | ID=Msa0315490-mRNA-1:exon:4558;Parent=Msa0315490-mRNA-1 |
| chr2_4 | five_prime_UTR | 11916677 | 11916848 | 11916677 | ID=Msa0315490-mRNA-1:five_prime_utr;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11916849 | 11916917 | 11916849 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11917063 | 11917131 | 11917063 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11917225 | 11917275 | 11917225 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11917872 | 11918006 | 11917872 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11918131 | 11918193 | 11918131 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11918765 | 11918880 | 11918765 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11919287 | 11919371 | 11919287 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11919562 | 11919621 | 11919562 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11920773 | 11920818 | 11920773 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11921153 | 11921226 | 11921153 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11921565 | 11921615 | 11921565 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11921931 | 11922131 | 11921931 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11922219 | 11922263 | 11922219 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| chr2_4 | CDS | 11922375 | 11922488 | 11922375 | ID=Msa0315490-mRNA-1:cds;Parent=Msa0315490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
