AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1445610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1445610 MtrunA17_Chr8g0392061 70.000 40 12 0 25 64 1 40 3.71e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTGCAGCTAAGGGTAAA+TGG 0.258353 tig0031149:-3762 Msa1445610:intron
ACTCTTCTCTCCTGCGATTT+CGG 0.336027 tig0031149:-2106 Msa1445610:CDS
TTTAGATTTGTGTGTCACTA+TGG 0.340447 tig0031149:+7732 None:intergenic
AACAGGCCGTGTCAAGTTCT+TGG 0.342693 tig0031149:-7764 Msa1445610:intron
AAGAGTTGAGGGAGAGGAGC+AGG 0.365471 tig0031149:+2123 None:intergenic
GAGAAATTGCAATTTGCAAC+AGG 0.367551 tig0031149:-5702 Msa1445610:intron
TAGAGTGCAGTATTTGTTAG+AGG 0.378069 tig0031149:+7636 None:intergenic
GTAAGCATTAGAGAGGTAAT+TGG 0.380633 tig0031149:-1991 Msa1445610:CDS
TGGACGACGGCGGTGGCGGC+TGG 0.419163 tig0031149:+2166 None:intergenic
TTGTAACACTTATCAGAATC+AGG 0.423594 tig0031149:+7691 None:intergenic
ACGGTGGACGACGGCGGTGG+CGG 0.433896 tig0031149:+2162 None:intergenic
CTAGGACCTTCTTTCAAAGA+TGG 0.440664 tig0031149:-7661 Msa1445610:CDS
GAGCAGGAGAGAGAGGAGAT+AGG 0.443340 tig0031149:+2139 None:intergenic
GGGAGAGGAGCAGGAGAGAG+AGG 0.460812 tig0031149:+2132 None:intergenic
TCGCAGGAGAGAAGAGTTGA+GGG 0.474986 tig0031149:+2112 None:intergenic
GAGGATCCATCTTTGAAAGA+AGG 0.495910 tig0031149:+7655 None:intergenic
GCGTCAGAGACTCTGCAGAC+TGG 0.496880 tig0031149:+2054 None:intergenic
TCGATTCTTCTTCGAAAGGA+AGG 0.507743 tig0031149:+2022 None:intergenic
AGGACGGTGGACGACGGCGG+TGG 0.514311 tig0031149:+2159 None:intergenic
GGAGAGAAGAGTTGAGGGAG+AGG 0.516491 tig0031149:+2117 None:intergenic
AAGCACGCTAACGGCGAGAG+AGG 0.522181 tig0031149:-8384 Msa1445610:intron
TGAAATCGCGCCGAAATCGC+AGG 0.534993 tig0031149:+2096 None:intergenic
AAGGGTAAATGGAAAGCAAA+TGG 0.546921 tig0031149:-3751 Msa1445610:CDS
CTGTTCGATTCTTCTTCGAA+AGG 0.550425 tig0031149:+2018 None:intergenic
ATCGCAGGAGAGAAGAGTTG+AGG 0.555531 tig0031149:+2111 None:intergenic
AAGTGTTACAATCTCACTCT+AGG 0.560873 tig0031149:-7679 Msa1445610:CDS
TCATGTCTCGAGAAGATCAC+AGG 0.563388 tig0031149:-5730 Msa1445610:CDS
CTAACAAATACTGCACTCTA+CGG 0.583520 tig0031149:-7633 Msa1445610:CDS
CAAATCTAAAGAAGAACTCA+AGG 0.583529 tig0031149:-7719 Msa1445610:CDS
AAATGGAAAGCAAATGGTGG+AGG 0.593984 tig0031149:-3745 Msa1445610:CDS
AGGAGAGAGAGGAGATAGGA+CGG 0.599761 tig0031149:+2143 None:intergenic
ACGGTGAAGAAGCACGCTAA+CGG 0.604790 tig0031149:-8393 Msa1445610:CDS
TTCTTCGAAAGGAAGGATTG+TGG 0.605228 tig0031149:+2029 None:intergenic
ATGCGAGACTATCTACACCT+TGG 0.607558 tig0031149:-5761 Msa1445610:CDS
TGCAGACTGGAATCAAACGC+AGG 0.619137 tig0031149:+2067 None:intergenic
GATAGGACGGTGGACGACGG+CGG 0.630563 tig0031149:+2156 None:intergenic
TTCGAAAGGAAGGATTGTGG+TGG 0.633520 tig0031149:+2032 None:intergenic
GAGACATGAATCAACATCCA+AGG 0.640028 tig0031149:+5744 None:intergenic
CAGTGTGGTAAGCATTAGAG+AGG 0.643115 tig0031149:-1998 Msa1445610:CDS
GGTAAATGGAAAGCAAATGG+TGG 0.644111 tig0031149:-3748 Msa1445610:CDS
GGAGATAGGACGGTGGACGA+CGG 0.653841 tig0031149:+2153 None:intergenic
CCACTCTCTGATGATATCGA+CGG 0.672978 tig0031149:-8412 None:intergenic
CGAAGAAGAATCGAACAGTG+TGG 0.677041 tig0031149:-2013 Msa1445610:CDS
AAAAGTCCAAGAACTTGACA+CGG 0.688785 tig0031149:+7758 None:intergenic
AGAGAGAGGAGATAGGACGG+TGG 0.695488 tig0031149:+2146 None:intergenic
ATCTAAAGAAGAACTCAAGG+CGG 0.698203 tig0031149:-7716 Msa1445610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCTTTTATTAATCAAA+AGG + tig0031149:4758-4777 None:intergenic 10.0%
!!! TTTTAGATTTTTTCAATATT+TGG - tig0031149:5559-5578 Msa1445610:intron 10.0%
!! AAAATAAAGAACATAAAAAA+AGG + tig0031149:5839-5858 None:intergenic 10.0%
!! ATCAAATAATACAAAAATTA+TGG + tig0031149:6745-6764 None:intergenic 10.0%
!! AATAAAAAATAGAACAACTA+TGG + tig0031149:2252-2271 None:intergenic 15.0%
!!! AGTTGTTCTATTTTTTATTT+CGG - tig0031149:2253-2272 Msa1445610:intron 15.0%
!!! TTTTGATATTGATTTTGTTT+TGG - tig0031149:2434-2453 Msa1445610:intron 15.0%
!!! ATATTGTTGCTTTTTTAATT+TGG - tig0031149:2887-2906 Msa1445610:intron 15.0%
!!! ATGATTTTCTTTAGTTAATT+TGG - tig0031149:2969-2988 Msa1445610:intron 15.0%
!!! AAATTTTTTGTTGAATGTTT+AGG + tig0031149:3486-3505 None:intergenic 15.0%
!! TATAGGTAGAAAAAATATAT+TGG - tig0031149:4209-4228 Msa1445610:intron 15.0%
!! GTATAACAATCTATTAATAT+TGG + tig0031149:5703-5722 None:intergenic 15.0%
!!! TAATTTTCAATTGTTTTCAA+TGG + tig0031149:6365-6384 None:intergenic 15.0%
!! AACATTTGTATTCAATATAT+TGG - tig0031149:7203-7222 Msa1445610:intron 15.0%
!! AGTTAATATAAAGAAATGAA+TGG + tig0031149:7298-7317 None:intergenic 15.0%
!!! TTTGTTTCTATTTATAATGA+AGG - tig0031149:7411-7430 Msa1445610:intron 15.0%
!!! AAAAACCTTTTTTTTAACAT+GGG + tig0031149:7745-7764 None:intergenic 15.0%
!!! TAAAAACCTTTTTTTTAACA+TGG + tig0031149:7746-7765 None:intergenic 15.0%
!! AAAAAATAGTAAAATCTCTT+TGG - tig0031149:7806-7825 Msa1445610:intron 15.0%
!! TTCATAATTCAAATGAAATA+TGG + tig0031149:7952-7971 None:intergenic 15.0%
!!! ATTTTAGAATATTGAGTTTG+TGG - tig0031149:2282-2301 Msa1445610:intron 20.0%
!! TGAAATATTACATCAAAAAG+TGG + tig0031149:2512-2531 None:intergenic 20.0%
!! AACAAATTACATATTGTGTT+TGG + tig0031149:2537-2556 None:intergenic 20.0%
!!! CAATATGTAATTTGTTGATT+TGG - tig0031149:2541-2560 Msa1445610:intron 20.0%
!! TAATAAAAATTCATCCAAAC+AGG - tig0031149:2605-2624 Msa1445610:intron 20.0%
!!! TCCTTTTATAATATTGTGTT+TGG - tig0031149:2798-2817 Msa1445610:intron 20.0%
!! TCCAAACACAATATTATAAA+AGG + tig0031149:2802-2821 None:intergenic 20.0%
!! CAATAAAACGTAAGTTTAAT+TGG + tig0031149:3035-3054 None:intergenic 20.0%
!! AAAACTATAAATAACGAACA+TGG + tig0031149:3064-3083 None:intergenic 20.0%
!!! GTTATTTATAGTTTTGTATC+CGG - tig0031149:3069-3088 Msa1445610:intron 20.0%
!! ATAATTAAAACTCAATCTCA+TGG + tig0031149:3098-3117 None:intergenic 20.0%
!! TATTTAGCATTGTTCTAATT+TGG - tig0031149:3205-3224 Msa1445610:intron 20.0%
!! ACACCAATAAAATCATATTT+AGG + tig0031149:3251-3270 None:intergenic 20.0%
!! ATTTAAACTTCGATAGATAA+TGG + tig0031149:3761-3780 None:intergenic 20.0%
!!! CTTTGATTTTTGTGATTTTA+TGG - tig0031149:3935-3954 Msa1445610:intron 20.0%
!!! GGTTTGTTATTATTATTTTG+TGG - tig0031149:3956-3975 Msa1445610:intron 20.0%
!! GAAAATATAGTATATCCAAA+TGG + tig0031149:4090-4109 None:intergenic 20.0%
!! ATTAATTTCCAGCAATAAAA+GGG + tig0031149:4113-4132 None:intergenic 20.0%
!! AATTAATTTCCAGCAATAAA+AGG + tig0031149:4114-4133 None:intergenic 20.0%
!! AAAAATATATTGGCATTGTT+AGG - tig0031149:4219-4238 Msa1445610:intron 20.0%
!! TAATATTAATGCTTAGAGAA+GGG + tig0031149:4278-4297 None:intergenic 20.0%
!!! ATATTAGCTTTAGATATGAT+AGG - tig0031149:4292-4311 Msa1445610:intron 20.0%
!! AAAAATAGAATTGCAAAAAC+AGG + tig0031149:4328-4347 None:intergenic 20.0%
!!! TTTCGATTTAATTTGATTTC+TGG - tig0031149:4387-4406 Msa1445610:intron 20.0%
!! TAATGAAAACAAAAGTGATA+AGG + tig0031149:4475-4494 None:intergenic 20.0%
!! AAAAAATGAAAATTGAGACA+TGG + tig0031149:4717-4736 None:intergenic 20.0%
!! ACATTGAAATTTGATATCTT+AGG - tig0031149:4863-4882 Msa1445610:intron 20.0%
!!! CATTTTCATAATAGATTCAA+TGG - tig0031149:4951-4970 Msa1445610:intron 20.0%
!! ATAATAGATTCAATGGATAA+CGG - tig0031149:4958-4977 Msa1445610:intron 20.0%
!! TTAAAATGTTAGAAGCAAAA+TGG + tig0031149:5062-5081 None:intergenic 20.0%
!!! GATAAATAGATACATACTTT+TGG + tig0031149:5402-5421 None:intergenic 20.0%
!!! TATTTCTTCTTATTTGTATG+CGG - tig0031149:5621-5640 Msa1445610:intron 20.0%
!!! TTTTATTCAAAGTGATACAA+AGG - tig0031149:5863-5882 Msa1445610:intron 20.0%
!! AAATGAAGATCCTAATATAA+GGG + tig0031149:6047-6066 None:intergenic 20.0%
!! TAAATGAAGATCCTAATATA+AGG + tig0031149:6048-6067 None:intergenic 20.0%
!!! TAAAAAGTTTTTATGTAGCT+TGG - tig0031149:6117-6136 Msa1445610:intron 20.0%
!! TTATGAATGCTTATTTCAAA+GGG + tig0031149:6163-6182 None:intergenic 20.0%
!! ATTATGAATGCTTATTTCAA+AGG + tig0031149:6164-6183 None:intergenic 20.0%
!! CAAATAATAACAATCAAACA+TGG + tig0031149:6507-6526 None:intergenic 20.0%
!!! AAAAGTTTTGAATGATTCTA+AGG + tig0031149:6697-6716 None:intergenic 20.0%
!!! TTTTAAGTCTGTTTTTGTTA+GGG - tig0031149:6719-6738 Msa1445610:intron 20.0%
!!! TTGTATTATTTGATCTCTTT+TGG - tig0031149:6751-6770 Msa1445610:intron 20.0%
!!! ACAAGTTTATTTTTATACCA+TGG - tig0031149:7002-7021 Msa1445610:intron 20.0%
!! CAAATACTATGATTCAAATA+CGG - tig0031149:7319-7338 Msa1445610:intron 20.0%
!! AAATACTATGATTCAAATAC+GGG - tig0031149:7320-7339 Msa1445610:intron 20.0%
!!! AGTAAACGTTATTATTTTCA+AGG - tig0031149:7622-7641 Msa1445610:intron 20.0%
!!! TTACTATTTCTTTTAAACCT+TGG + tig0031149:7770-7789 None:intergenic 20.0%
!! AGAAATTGTCGAAAAAAAAT+AGG + tig0031149:7918-7937 None:intergenic 20.0%
!! ATAATTCAAATGAAATATGG+AGG + tig0031149:7949-7968 None:intergenic 20.0%
!! TATATGATGAAAAATGTTGT+AGG - tig0031149:8021-8040 Msa1445610:intron 20.0%
!! ATATGATGAAAAATGTTGTA+GGG - tig0031149:8022-8041 Msa1445610:intron 20.0%
!!! TTTTTTGTCCATTTATAGTT+TGG - tig0031149:8084-8103 Msa1445610:intron 20.0%
!! TAAGTATGAAATTCAGTTAT+GGG + tig0031149:8110-8129 None:intergenic 20.0%
!! ATAAGTATGAAATTCAGTTA+TGG + tig0031149:8111-8130 None:intergenic 20.0%
!! AGTTGGTCTAATTATGAAAA+TGG - tig0031149:2310-2329 Msa1445610:intron 25.0%
! TAGCAATCTGAAAATTTAGA+TGG + tig0031149:2483-2502 None:intergenic 25.0%
! ACTACATTGGATGATATATA+TGG - tig0031149:3144-3163 Msa1445610:intron 25.0%
!! CTGCCTAAATATGATTTTAT+TGG - tig0031149:3245-3264 Msa1445610:intron 25.0%
! GTTCAAAATTGCATATCTTA+AGG + tig0031149:3282-3301 None:intergenic 25.0%
! GATATATGATATGATCTTCA+AGG + tig0031149:3376-3395 None:intergenic 25.0%
! TCATAAAATGGAAACAACTT+GGG + tig0031149:3696-3715 None:intergenic 25.0%
!! AAGTCAGTTTAAAATTCGTA+AGG + tig0031149:3784-3803 None:intergenic 25.0%
!! CATACTCATCAATTTGAAAT+AGG + tig0031149:3815-3834 None:intergenic 25.0%
! AAATTGATGAGTATGTGAAA+CGG - tig0031149:3820-3839 Msa1445610:intron 25.0%
! GTGATATTGTTAATTTCGTT+AGG + tig0031149:3874-3893 None:intergenic 25.0%
!!! TTGATTTTGATTATCAGTCA+TGG - tig0031149:4058-4077 Msa1445610:intron 25.0%
! TTAATTTCCAGCAATAAAAG+GGG + tig0031149:4112-4131 None:intergenic 25.0%
!! TTTTATACAAGCCTGAATTA+TGG - tig0031149:4176-4195 Msa1445610:intron 25.0%
! TTTATACAAGCCTGAATTAT+GGG - tig0031149:4177-4196 Msa1445610:intron 25.0%
! CTAATATTAATGCTTAGAGA+AGG + tig0031149:4279-4298 None:intergenic 25.0%
! TACACAAAACAAGTAATTAG+AGG - tig0031149:4835-4854 Msa1445610:intron 25.0%
!! CTTCAAAGTAGTCTTTAAAA+CGG + tig0031149:4904-4923 None:intergenic 25.0%
! TAATAGATTCAATGGATAAC+GGG - tig0031149:4959-4978 Msa1445610:intron 25.0%
!! ATTGATTTCTTGCAAACTTA+AGG + tig0031149:5023-5042 None:intergenic 25.0%
!! AGTTTGCAAGAAATCAATTT+TGG - tig0031149:5025-5044 Msa1445610:intron 25.0%
! ACATAATTAATGAGACCATT+CGG + tig0031149:5206-5225 None:intergenic 25.0%
!! TTTTCATTTTCGTCAGTAAA+AGG - tig0031149:5311-5330 Msa1445610:intron 25.0%
! AACCAATTCAAGAAAAACAA+AGG + tig0031149:5437-5456 None:intergenic 25.0%
! AAGTAGCTTCTTATAAGAAA+AGG + tig0031149:5467-5486 None:intergenic 25.0%
!! TTTTCTTATAAGAAGCTACT+TGG - tig0031149:5466-5485 Msa1445610:intron 25.0%
! ATTGTCCCAAATTTGTAAAT+TGG + tig0031149:5652-5671 None:intergenic 25.0%
!! AATTTACAAATTTGGGACAA+TGG - tig0031149:5651-5670 Msa1445610:intron 25.0%
! CAGTAAAACTAAGTACTATT+AGG - tig0031149:5886-5905 Msa1445610:intron 25.0%
! AAAAAAAGGGTCAAACTATT+AGG + tig0031149:6222-6241 None:intergenic 25.0%
!!! TTTATTTGCTGTCATTGAAA+TGG + tig0031149:6464-6483 None:intergenic 25.0%
! ATTTCAATGACAGCAAATAA+AGG - tig0031149:6463-6482 Msa1445610:intron 25.0%
! CTATTCAAATCTTGTAAGTT+GGG + tig0031149:6556-6575 None:intergenic 25.0%
! TCTATTCAAATCTTGTAAGT+TGG + tig0031149:6557-6576 None:intergenic 25.0%
!!! GTTTTAAGTCTGTTTTTGTT+AGG - tig0031149:6718-6737 Msa1445610:intron 25.0%
!!! AGTTTTATATTCCTCAAACA+TGG - tig0031149:7371-7390 Msa1445610:intron 25.0%
!! GTTTTATATTCCTCAAACAT+GGG - tig0031149:7372-7391 Msa1445610:intron 25.0%
!! TTTTATATTCCTCAAACATG+GGG - tig0031149:7373-7392 Msa1445610:intron 25.0%
!! ACTACACTTGTTAAACAAAT+CGG + tig0031149:7605-7624 None:intergenic 25.0%
!!! CTTTTTTTTAACATGGGATT+TGG + tig0031149:7739-7758 None:intergenic 25.0%
! CAAATCCCATGTTAAAAAAA+AGG - tig0031149:7737-7756 Msa1445610:CDS 25.0%
!!! AAAAAAAAGGTTTTTAGCCA+AGG - tig0031149:7750-7769 Msa1445610:CDS 25.0%
!! AATTAAATGGGTTTGATATG+GGG + tig0031149:7875-7894 None:intergenic 25.0%
!! GAATTAAATGGGTTTGATAT+GGG + tig0031149:7876-7895 None:intergenic 25.0%
CTTGAACATGAACAAAAATC+AGG + tig0031149:2061-2080 None:intergenic 30.0%
!! TCTTTGTTGTTGTTACAGTT+TGG - tig0031149:2175-2194 Msa1445610:intron 30.0%
! CATCAGTTTGGATATTTTCA+AGG - tig0031149:2213-2232 Msa1445610:intron 30.0%
AGAACAACTATGGAGTATAA+GGG + tig0031149:2242-2261 None:intergenic 30.0%
TAGAACAACTATGGAGTATA+AGG + tig0031149:2243-2262 None:intergenic 30.0%
! GTGACATTTTCTCAAACATT+TGG + tig0031149:2397-2416 None:intergenic 30.0%
ATCTGAAAATTTAGATGGAG+AGG + tig0031149:2478-2497 None:intergenic 30.0%
! TTTAGATTTGTGTGTCACTA+TGG + tig0031149:2657-2676 None:intergenic 30.0%
CAAATCTAAAGAAGAACTCA+AGG - tig0031149:2667-2686 Msa1445610:intron 30.0%
TTGTAACACTTATCAGAATC+AGG + tig0031149:2698-2717 None:intergenic 30.0%
! TCATGTTGATAGGAACAATT+AGG + tig0031149:2841-2860 None:intergenic 30.0%
! GCATGAATTTTCATGTTGAT+AGG + tig0031149:2851-2870 None:intergenic 30.0%
TCTATTTGCAGATACTACAT+TGG - tig0031149:3131-3150 Msa1445610:intron 30.0%
ATGATATATATGGTCAACTC+AGG - tig0031149:3154-3173 Msa1445610:intron 30.0%
AACTCAGGAAGAAATAATGA+AGG - tig0031149:3169-3188 Msa1445610:intron 30.0%
! TAATTTTCAGCTGAATGATC+TGG + tig0031149:3521-3540 None:intergenic 30.0%
CTCATAAAATGGAAACAACT+TGG + tig0031149:3697-3716 None:intergenic 30.0%
CATTCGTTCTTCTCATAAAA+TGG + tig0031149:3708-3727 None:intergenic 30.0%
! TTTTATGAGAAGAACGAATG+AGG - tig0031149:3708-3727 Msa1445610:intron 30.0%
! TAAACTTCGATAGATAATGG+AGG + tig0031149:3758-3777 None:intergenic 30.0%
! ATATTTTCCCCTTTTATTGC+TGG - tig0031149:4102-4121 Msa1445610:intron 30.0%
TGGAAATTAATTCTCGAAGT+GGG - tig0031149:4122-4141 Msa1445610:intron 30.0%
CTTTAGATATGATAGGTTGT+TGG - tig0031149:4299-4318 Msa1445610:intron 30.0%
!!! TTCATTTGTTCCTGGTTTTT+TGG - tig0031149:4786-4805 Msa1445610:intron 30.0%
TAAAGAGAAACCAAAAAACC+AGG + tig0031149:4799-4818 None:intergenic 30.0%
! CAAAATTGGTGTTCTTTCTT+TGG + tig0031149:5159-5178 None:intergenic 30.0%
! AAGAACACCAATTTTGCAAA+AGG - tig0031149:5163-5182 Msa1445610:intron 30.0%
TGGTCTCATTAATTATGTGT+CGG - tig0031149:5208-5227 Msa1445610:intron 30.0%
CATTAATTATGTGTCGGATA+TGG - tig0031149:5214-5233 Msa1445610:intron 30.0%
!!! TGCCTTTGTTTTTCTTGAAT+TGG - tig0031149:5432-5451 Msa1445610:intron 30.0%
! GCTACTTGGTAATTTATATG+TGG - tig0031149:5480-5499 Msa1445610:intron 30.0%
! GAATTTTGTAGACTAAGTGT+TGG - tig0031149:5502-5521 Msa1445610:intron 30.0%
CTTGGCCAATTTACAAATTT+GGG - tig0031149:5644-5663 Msa1445610:intron 30.0%
! TGCATATTGTCAAGACTTTT+TGG - tig0031149:5941-5960 Msa1445610:intron 30.0%
GGATAGAGAATGATGAAATT+GGG - tig0031149:5997-6016 Msa1445610:intron 30.0%
CTCATTATCACCCTTATATT+AGG - tig0031149:6034-6053 Msa1445610:intron 30.0%
ACAACGATTCTGTAAGAATT+CGG - tig0031149:6068-6087 Msa1445610:intron 30.0%
! AAAAGCATACATACATAGAG+AGG + tig0031149:6250-6269 None:intergenic 30.0%
! GTGATAATATTTGCTAGCAT+AGG - tig0031149:6300-6319 Msa1445610:intron 30.0%
AATTTCTTTCTTTGCAGCTA+AGG - tig0031149:6616-6635 Msa1445610:intron 30.0%
ATTTCTTTCTTTGCAGCTAA+GGG - tig0031149:6617-6636 Msa1445610:intron 30.0%
!! ATTCTAAGGTTGATAGTTAC+AGG + tig0031149:6683-6702 None:intergenic 30.0%
!!! ATCTCTTTTGGAACTGTATT+TGG - tig0031149:6763-6782 Msa1445610:intron 30.0%
! TTTTGTTGATCAAGACAAAG+AGG + tig0031149:6892-6911 None:intergenic 30.0%
!! TGATCAACGATTTTAACCAT+GGG - tig0031149:6959-6978 Msa1445610:intron 30.0%
TAAATGTTTGAAGAAACCCA+TGG + tig0031149:6978-6997 None:intergenic 30.0%
TGTGTAAGAATGAAGTTGTA+TGG - tig0031149:7033-7052 Msa1445610:intron 30.0%
CAAACACTATGATTCAAACA+CGG - tig0031149:7069-7088 Msa1445610:intron 30.0%
AAACACTATGATTCAAACAC+GGG - tig0031149:7070-7089 Msa1445610:intron 30.0%
! CGAATTAAATGGGTTTGATA+TGG + tig0031149:7877-7896 None:intergenic 30.0%
AATGAGAGAAACAGAACAAA+GGG + tig0031149:8140-8159 None:intergenic 30.0%
AAATGAGAGAAACAGAACAA+AGG + tig0031149:8141-8160 None:intergenic 30.0%
CTACGATATCTTCATCAGTT+TGG - tig0031149:2201-2220 Msa1445610:intron 35.0%
GAACAACTATGGAGTATAAG+GGG + tig0031149:2241-2260 None:intergenic 35.0%
! TTGAGTTTGTGGATTGAAGT+TGG - tig0031149:2293-2312 Msa1445610:intron 35.0%
AAAAGTCCAAGAACTTGACA+CGG + tig0031149:2631-2650 None:intergenic 35.0%
ATCTAAAGAAGAACTCAAGG+CGG - tig0031149:2670-2689 Msa1445610:intron 35.0%
AAGTGTTACAATCTCACTCT+AGG - tig0031149:2707-2726 Msa1445610:intron 35.0%
! TAGAGTGCAGTATTTGTTAG+AGG + tig0031149:2753-2772 None:intergenic 35.0%
CTAACAAATACTGCACTCTA+CGG - tig0031149:2753-2772 Msa1445610:intron 35.0%
! TAATTGGTTCAACAACAGTG+AGG + tig0031149:3019-3038 None:intergenic 35.0%
ACATTATCAGCTCAGAACAT+GGG + tig0031149:3899-3918 None:intergenic 35.0%
AACATTATCAGCTCAGAACA+TGG + tig0031149:3900-3919 None:intergenic 35.0%
!!! GTGTTGTAGCTTTTGAGATA+TGG - tig0031149:3994-4013 Msa1445610:intron 35.0%
CTGGAAATTAATTCTCGAAG+TGG - tig0031149:4121-4140 Msa1445610:intron 35.0%
! ATTATGGGCTATTTGGCTAT+AGG - tig0031149:4192-4211 Msa1445610:intron 35.0%
GAGAAATTGCAATTTGCAAC+AGG - tig0031149:4684-4703 Msa1445610:intron 35.0%
! CGTTGATCCTTTTGCAAAAT+TGG + tig0031149:5173-5192 None:intergenic 35.0%
CTAAAAATGAACAGAAGCAG+AGG + tig0031149:5259-5278 None:intergenic 35.0%
! TCATTTTCGTCAGTAAAAGG+TGG - tig0031149:5314-5333 Msa1445610:intron 35.0%
!! TAAGTGTTGGTTAGTAGCTT+TGG - tig0031149:5515-5534 Msa1445610:intron 35.0%
!! AAGTGTTGGTTAGTAGCTTT+GGG - tig0031149:5516-5535 Msa1445610:intron 35.0%
!! TTAGTAGCTTTGGGTTGATT+TGG - tig0031149:5525-5544 Msa1445610:intron 35.0%
GCTTGGCCAATTTACAAATT+TGG - tig0031149:5643-5662 Msa1445610:intron 35.0%
! TTTGGGACAATGGACAAAAA+AGG - tig0031149:5661-5680 Msa1445610:intron 35.0%
GGGATAGAGAATGATGAAAT+TGG - tig0031149:5996-6015 Msa1445610:intron 35.0%
! TAAGGGTGATAATGAGATTG+AGG + tig0031149:6030-6049 None:intergenic 35.0%
CATTCATAATTCAAGTCGCT+TGG - tig0031149:6174-6193 Msa1445610:intron 35.0%
TAGAGAGGTGGGAAAAAAAA+GGG + tig0031149:6235-6254 None:intergenic 35.0%
ATAGAGAGGTGGGAAAAAAA+AGG + tig0031149:6236-6255 None:intergenic 35.0%
TCAATGGTGAAACTTAAGTG+AGG + tig0031149:6349-6368 None:intergenic 35.0%
TCAATGACAGCAAATAAAGG+TGG - tig0031149:6466-6485 Msa1445610:intron 35.0%
CAATGACAGCAAATAAAGGT+GGG - tig0031149:6467-6486 Msa1445610:intron 35.0%
AAGGGTAAATGGAAAGCAAA+TGG - tig0031149:6635-6654 Msa1445610:intron 35.0%
! AGTTGTTAACTTGAGAGCAT+TGG - tig0031149:6795-6814 Msa1445610:intron 35.0%
!! GTGATCAACGATTTTAACCA+TGG - tig0031149:6958-6977 Msa1445610:intron 35.0%
TGCTATATTCCTCAAACATG+AGG - tig0031149:7123-7142 Msa1445610:intron 35.0%
TACTTATAGCCTCATGTTTG+AGG + tig0031149:7135-7154 None:intergenic 35.0%
TACTATGATTCAAATACGGG+AGG - tig0031149:7323-7342 Msa1445610:intron 35.0%
AATAGTAGAGCTGGGTATAT+GGG - tig0031149:7839-7858 Msa1445610:intron 35.0%
TGATGAAAAATGTTGTAGGG+TGG - tig0031149:8025-8044 Msa1445610:intron 35.0%
GTTATGGGCCAAACTATAAA+TGG + tig0031149:8095-8114 None:intergenic 35.0%
GTAAGCATTAGAGAGGTAAT+TGG - tig0031149:8395-8414 Msa1445610:CDS 35.0%
CTAGGACCTTCTTTCAAAGA+TGG - tig0031149:2725-2744 Msa1445610:intron 40.0%
! GAGGATCCATCTTTGAAAGA+AGG + tig0031149:2734-2753 None:intergenic 40.0%
AAACTCAATCTCATGGCAAC+CGG + tig0031149:3091-3110 None:intergenic 40.0%
!! CTTCGATAGATAATGGAGGA+TGG + tig0031149:3754-3773 None:intergenic 40.0%
CAAAGCTACAAAGTGAAGAG+AGG + tig0031149:4041-4060 None:intergenic 40.0%
! AGCCTGAATTATGGGCTATT+TGG - tig0031149:4185-4204 Msa1445610:intron 40.0%
AGCCAAATAGCCCATAATTC+AGG + tig0031149:4190-4209 None:intergenic 40.0%
CATTGTTAGGAAGAGAAGAG+AGG - tig0031149:4232-4251 Msa1445610:intron 40.0%
GAGACATGAATCAACATCCA+AGG + tig0031149:4645-4664 None:intergenic 40.0%
CTGTTCAGTTCATTTGTTCC+TGG - tig0031149:4778-4797 Msa1445610:intron 40.0%
TCGTCAGTAAAAGGTGGAAA+AGG - tig0031149:5320-5339 Msa1445610:intron 40.0%
CGTCAGTAAAAGGTGGAAAA+GGG - tig0031149:5321-5340 Msa1445610:intron 40.0%
AGGTGGAAAAGGGTTTCTAT+TGG - tig0031149:5331-5350 Msa1445610:intron 40.0%
GGGTTTCTATTGGATTGTTG+AGG - tig0031149:5341-5360 Msa1445610:intron 40.0%
TGGATTGTTGAGGAACAGAT+TGG - tig0031149:5351-5370 Msa1445610:intron 40.0%
GGATTGTTGAGGAACAGATT+GGG - tig0031149:5352-5371 Msa1445610:intron 40.0%
! CTTCTTATTTGTATGCGGCT+TGG - tig0031149:5626-5645 Msa1445610:intron 40.0%
CTGTCATTAACCAGTTCAAG+TGG - tig0031149:5910-5929 Msa1445610:intron 40.0%
CAGATCAAAACCACTTGAAC+TGG + tig0031149:5923-5942 None:intergenic 40.0%
GACATAGCTAGATGACTGAT+GGG - tig0031149:6090-6109 Msa1445610:intron 40.0%
GCATACATACATAGAGAGGT+GGG + tig0031149:6246-6265 None:intergenic 40.0%
AGCATACATACATAGAGAGG+TGG + tig0031149:6247-6266 None:intergenic 40.0%
TCTTTGCAGCTAAGGGTAAA+TGG - tig0031149:6624-6643 Msa1445610:intron 40.0%
GGTAAATGGAAAGCAAATGG+TGG - tig0031149:6638-6657 Msa1445610:intron 40.0%
AAATGGAAAGCAAATGGTGG+AGG - tig0031149:6641-6660 Msa1445610:intron 40.0%
TCTTACACAAAGAGAGACCA+TGG + tig0031149:7022-7041 None:intergenic 40.0%
ATTCAAACACGGGATGCTTT+AGG - tig0031149:7080-7099 Msa1445610:intron 40.0%
TACTGATATCCCCATGTTTG+AGG + tig0031149:7385-7404 None:intergenic 40.0%
TTTAGCCTGAATAGTAGAGC+TGG - tig0031149:7830-7849 Msa1445610:intron 40.0%
TTAGCCTGAATAGTAGAGCT+GGG - tig0031149:7831-7850 Msa1445610:intron 40.0%
TATACCCAGCTCTACTATTC+AGG + tig0031149:7838-7857 None:intergenic 40.0%
GAATAGTAGAGCTGGGTATA+TGG - tig0031149:7838-7857 Msa1445610:intron 40.0%
AAAAATAGGTCTTAAGCCCG+TGG + tig0031149:7904-7923 None:intergenic 40.0%
TGAAAAATGTTGTAGGGTGG+TGG - tig0031149:8028-8047 Msa1445610:intron 40.0%
TTCTTCGAAAGGAAGGATTG+TGG + tig0031149:8360-8379 None:intergenic 40.0%
TCGATTCTTCTTCGAAAGGA+AGG + tig0031149:8367-8386 None:intergenic 40.0%
CTGTTCGATTCTTCTTCGAA+AGG + tig0031149:8371-8390 None:intergenic 40.0%
TTTGTGGTAACACAGTGAGC+TGG - tig0031149:3972-3991 Msa1445610:intron 45.0%
CAGTCATGGTCTGAACCATT+TGG - tig0031149:4072-4091 Msa1445610:intron 45.0%
AGGAAGAGAAGAGAGGTTGT+TGG - tig0031149:4239-4258 Msa1445610:intron 45.0%
GCTTAGAGAAGGGCAAAAAC+AGG + tig0031149:4268-4287 None:intergenic 45.0%
ATGCGAGACTATCTACACCT+TGG - tig0031149:4625-4644 Msa1445610:intron 45.0%
TCATGTCTCGAGAAGATCAC+AGG - tig0031149:4656-4675 Msa1445610:intron 45.0%
CAACGATTTAGAGAGCCGAA+TGG - tig0031149:5188-5207 Msa1445610:intron 45.0%
! CAGCATGCAGCGTATTTTAC+TGG - tig0031149:5725-5744 Msa1445610:CDS 45.0%
GGACATAGCTAGATGACTGA+TGG - tig0031149:6089-6108 Msa1445610:intron 45.0%
! CCGTGGACTGCGAATTAAAT+GGG + tig0031149:7887-7906 None:intergenic 45.0%
CCCATTTAATTCGCAGTCCA+CGG - tig0031149:7884-7903 Msa1445610:intron 45.0%
CCATTTAATTCGCAGTCCAC+GGG - tig0031149:7885-7904 Msa1445610:intron 45.0%
ACTCTTCTCTCCTGCGATTT+CGG - tig0031149:8280-8299 Msa1445610:intron 45.0%
TTCGAAAGGAAGGATTGTGG+TGG + tig0031149:8357-8376 None:intergenic 45.0%
CGAAGAAGAATCGAACAGTG+TGG - tig0031149:8373-8392 Msa1445610:intron 45.0%
CAGTGTGGTAAGCATTAGAG+AGG - tig0031149:8388-8407 Msa1445610:CDS 45.0%
! ACGGTGAAGAAGCACGCTAA+CGG - tig0031149:1993-2012 Msa1445610:CDS 50.0%
AGAACTTGACACGGCCTGTT+TGG + tig0031149:2622-2641 None:intergenic 50.0%
AACAGGCCGTGTCAAGTTCT+TGG - tig0031149:2622-2641 Msa1445610:intron 50.0%
! CCCGTGGACTGCGAATTAAA+TGG + tig0031149:7888-7907 None:intergenic 50.0%
AGGAGAGAGAGGAGATAGGA+CGG + tig0031149:8246-8265 None:intergenic 50.0%
TCGCAGGAGAGAAGAGTTGA+GGG + tig0031149:8277-8296 None:intergenic 50.0%
ATCGCAGGAGAGAAGAGTTG+AGG + tig0031149:8278-8297 None:intergenic 50.0%
TGCAGACTGGAATCAAACGC+AGG + tig0031149:8322-8341 None:intergenic 50.0%
ATTTCCACCCGTGCAACGCA+CGG + tig0031149:7698-7717 None:intergenic 55.0%
AGAGAGAGGAGATAGGACGG+TGG + tig0031149:8243-8262 None:intergenic 55.0%
GAGCAGGAGAGAGAGGAGAT+AGG + tig0031149:8250-8269 None:intergenic 55.0%
AAGAGTTGAGGGAGAGGAGC+AGG + tig0031149:8266-8285 None:intergenic 55.0%
GGAGAGAAGAGTTGAGGGAG+AGG + tig0031149:8272-8291 None:intergenic 55.0%
TGAAATCGCGCCGAAATCGC+AGG + tig0031149:8293-8312 None:intergenic 55.0%
AAGCACGCTAACGGCGAGAG+AGG - tig0031149:2002-2021 Msa1445610:CDS 60.0%
TTGTTCGCCCGTGCGTTGCA+CGG - tig0031149:7687-7706 Msa1445610:CDS 60.0%
TTTCCACCCGTGCAACGCAC+GGG + tig0031149:7697-7716 None:intergenic 60.0%
CCTCACCGCCGCTCAATTAC+CGG - tig0031149:8188-8207 Msa1445610:intron 60.0%
AGCTGCCGCCGGTAATTGAG+CGG + tig0031149:8199-8218 None:intergenic 60.0%
GGAGATAGGACGGTGGACGA+CGG + tig0031149:8236-8255 None:intergenic 60.0%
GCGTCAGAGACTCTGCAGAC+TGG + tig0031149:8335-8354 None:intergenic 60.0%
TGTTCGCCCGTGCGTTGCAC+GGG - tig0031149:7688-7707 Msa1445610:CDS 65.0%
CCGGTAATTGAGCGGCGGTG+AGG + tig0031149:8191-8210 None:intergenic 65.0%
CACCGCCGCTCAATTACCGG+CGG - tig0031149:8191-8210 Msa1445610:intron 65.0%
TGCCGCCGGTAATTGAGCGG+CGG + tig0031149:8196-8215 None:intergenic 65.0%
GATAGGACGGTGGACGACGG+CGG + tig0031149:8233-8252 None:intergenic 65.0%
GGGAGAGGAGCAGGAGAGAG+AGG + tig0031149:8257-8276 None:intergenic 65.0%
TCGCCCGTGCGTTGCACGGG+TGG - tig0031149:7691-7710 Msa1445610:CDS 75.0%
TGGCGGCTGGTAGCTGCCGC+CGG + tig0031149:8210-8229 None:intergenic 75.0%
ACGGTGGACGACGGCGGTGG+CGG + tig0031149:8227-8246 None:intergenic 75.0%
AGGACGGTGGACGACGGCGG+TGG + tig0031149:8230-8249 None:intergenic 75.0%
!! TGGACGACGGCGGTGGCGGC+TGG + tig0031149:8223-8242 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0031149 gene 1984 8424 1984 ID=Msa1445610;Name=Msa1445610
tig0031149 mRNA 1984 8424 1984 ID=Msa1445610-mRNA-1;Parent=Msa1445610;Name=Msa1445610-mRNA-1;_AED=0.55;_eAED=0.80;_QI=0|0|0|0.4|1|1|5|0|179
tig0031149 exon 8385 8424 8385 ID=Msa1445610-mRNA-1:exon:15089;Parent=Msa1445610-mRNA-1
tig0031149 exon 7632 7781 7632 ID=Msa1445610-mRNA-1:exon:15088;Parent=Msa1445610-mRNA-1
tig0031149 exon 5703 5807 5703 ID=Msa1445610-mRNA-1:exon:15087;Parent=Msa1445610-mRNA-1
tig0031149 exon 3739 3775 3739 ID=Msa1445610-mRNA-1:exon:15086;Parent=Msa1445610-mRNA-1
tig0031149 exon 1984 2191 1984 ID=Msa1445610-mRNA-1:exon:15085;Parent=Msa1445610-mRNA-1
tig0031149 CDS 8385 8424 8385 ID=Msa1445610-mRNA-1:cds;Parent=Msa1445610-mRNA-1
tig0031149 CDS 7632 7781 7632 ID=Msa1445610-mRNA-1:cds;Parent=Msa1445610-mRNA-1
tig0031149 CDS 5703 5807 5703 ID=Msa1445610-mRNA-1:cds;Parent=Msa1445610-mRNA-1
tig0031149 CDS 3739 3775 3739 ID=Msa1445610-mRNA-1:cds;Parent=Msa1445610-mRNA-1
tig0031149 CDS 1984 2191 1984 ID=Msa1445610-mRNA-1:cds;Parent=Msa1445610-mRNA-1
Gene Sequence

>Msa1445610

ATGATATCGACGGTGAAGAAGCACGCTAACGGCGAGAGAGGCCGTGTCAAGTTCTTGGACTTTTCTTCCATAGTGACACACAAATCTAAAGAAGAACTCAAGGCGGATCCTGATTCTGATAAGTGTTACAATCTCACTCTAGGACCTTCTTTCAAAGATGGATCCTCTAACAAATACTGCACTCTACGGTATATTAAGATGAGTGAACAAGAACATGCGAGACTATCTACACCTTGGATGTTGATTCATGTCTCGAGAAGATCACAGGAGATTGAGAAATTGCAATTTGCAACAGCTAAGGGTAAATGGAAAGCAAATGGTGGAGGATTTAACTACCAGCCGCCACCGCCGTCGTCCACCGTCCTATCTCCTCTCTCTCCTGCTCCTCTCCCTCAACTCTTCTCTCCTGCGATTTCGGCGCGATTTCAGATTCTCCTGCGTTTGATTCCAGTCTGCAGAGTCTCTGACGCCACCACAATCCTTCCTTTCGAAGAAGAATCGAACAGTGTGGTAAGCATTAGAGAGGTAATTGGATCTTGA

Protein sequence

>Msa1445610

MISTVKKHANGERGRVKFLDFSSIVTHKSKEELKADPDSDKCYNLTLGPSFKDGSSNKYCTLRYIKMSEQEHARLSTPWMLIHVSRRSQEIEKLQFATAKGKWKANGGGFNYQPPPPSSTVLSPLSPAPLPQLFSPAISARFQILLRLIPVCRVSDATTILPFEEESNSVVSIREVIGS*