Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446000 | A0A072TNX6 | 86.384 | 448 | 12 | 3 | 1 | 399 | 1 | 448 | 0.0 | 777 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1440940 | Msa1446000 | 0.807443 | 5.042552e-50 | -8.615850e-47 |
| Msa1278960 | Msa1446000 | 0.808647 | 2.795019e-50 | -8.615850e-47 |
| Msa1311340 | Msa1446000 | 0.801318 | 9.527513e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446000 | MtrunA17_Chr8g0348961 | 86.384 | 448 | 12 | 3 | 1 | 399 | 1 | 448 | 0.0 | 777 |
| Msa1446000 | MtrunA17_Chr1g0203061 | 59.732 | 447 | 128 | 6 | 1 | 396 | 1 | 446 | 0.0 | 518 |
| Msa1446000 | MtrunA17_Chr3g0110381 | 47.523 | 444 | 167 | 10 | 1 | 385 | 1 | 437 | 2.19e-135 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446000 | AT4G00500.1 | 58.352 | 449 | 133 | 7 | 1 | 396 | 1 | 448 | 1.66e-176 | 500 |
| Msa1446000 | AT4G00500.2 | 58.352 | 449 | 133 | 7 | 1 | 396 | 1 | 448 | 1.66e-176 | 500 |
| Msa1446000 | AT3G49050.1 | 52.643 | 473 | 148 | 7 | 1 | 397 | 1 | 473 | 5.69e-172 | 489 |
| Msa1446000 | AT5G37710.1 | 46.861 | 446 | 170 | 8 | 1 | 394 | 1 | 431 | 7.42e-131 | 383 |
| Msa1446000 | AT5G37710.2 | 52.874 | 348 | 109 | 6 | 1 | 296 | 1 | 345 | 2.70e-118 | 348 |
Find 118 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTATATGTTGACGTTTA+TGG | 0.092686 | tig0031256:-24392 | Msa1446000:CDS |
| GCATTATTTGCTATTAGTTT+TGG | 0.174137 | tig0031256:-19780 | Msa1446000:three_prime_UTR |
| TGATATAAAGAAATAATTTA+AGG | 0.194108 | tig0031256:+19814 | None:intergenic |
| GCTTCATAATCGCGACAAAT+TGG | 0.195008 | tig0031256:-24323 | Msa1446000:CDS |
| AATATCATACTAAACTAAAA+TGG | 0.228673 | tig0031256:+19721 | None:intergenic |
| ATTGTAATTTAGAGCCTATT+TGG | 0.229749 | tig0031256:-19659 | Msa1446000:three_prime_UTR |
| ACTTATATGTTGACGTTTAT+GGG | 0.239710 | tig0031256:-24391 | Msa1446000:CDS |
| CATGGTGGATATGTTCATAA+TGG | 0.280337 | tig0031256:-24487 | Msa1446000:CDS |
| TTTCTTTATATCAAGCTTCA+TGG | 0.285716 | tig0031256:-19804 | Msa1446000:three_prime_UTR |
| ATTGTGTCTCATGTGCTTAA+AGG | 0.289797 | tig0031256:-22762 | Msa1446000:CDS |
| CTATTTGGATTAAACTTCTT+AGG | 0.290416 | tig0031256:-19644 | Msa1446000:three_prime_UTR |
| ACTTGAGTGTGTTTATTGTC+TGG | 0.305050 | tig0031256:-24869 | Msa1446000:CDS |
| CTTCATAATCGCGACAAATT+GGG | 0.318156 | tig0031256:-24322 | Msa1446000:CDS |
| CTAAGAAGTTTAATCCAAAT+AGG | 0.326933 | tig0031256:+19645 | None:intergenic |
| CCGATGTATGTCTCTCAATT+TGG | 0.330984 | tig0031256:-24257 | Msa1446000:CDS |
| GAAGATTTCCACCCATTGTT+AGG | 0.336238 | tig0031256:-21231 | Msa1446000:CDS |
| ATGGGACATTCACTTGGTGC+TGG | 0.338920 | tig0031256:-24373 | Msa1446000:CDS |
| AGATCGGAATATGGAGATTC+CGG | 0.339282 | tig0031256:-20115 | Msa1446000:CDS |
| GCTAGAGAAAGATCGGAATA+TGG | 0.341114 | tig0031256:-20124 | Msa1446000:CDS |
| ATTGATGCTGAGGAAGATTC+TGG | 0.359458 | tig0031256:-19958 | Msa1446000:CDS |
| TTGTCGAGCGAAAGCCCTTC+AGG | 0.380817 | tig0031256:-22667 | Msa1446000:intron |
| TTGTCTTGCGGAAGGATTAC+GGG | 0.385981 | tig0031256:-24654 | Msa1446000:CDS |
| ATGGTGGATATGTTCATAAT+GGG | 0.386158 | tig0031256:-24486 | Msa1446000:CDS |
| TGGGACATTCACTTGGTGCT+GGG | 0.386587 | tig0031256:-24372 | Msa1446000:CDS |
| CCTTCGGAGGGCAGTTGCTT+TGG | 0.387374 | tig0031256:-20028 | Msa1446000:CDS |
| GTTATGGCATTAATCCTGAT+TGG | 0.390744 | tig0031256:-24678 | Msa1446000:CDS |
| CTACTGACCATGCCATCCTT+TGG | 0.397629 | tig0031256:-21153 | Msa1446000:CDS |
| GCATACTCACCTTCCTCATA+TGG | 0.405824 | tig0031256:-19994 | Msa1446000:CDS |
| GTTATTGAAGGCAGCGGATT+GGG | 0.408048 | tig0031256:-24464 | Msa1446000:intron |
| CTTGAGTGTGTTTATTGTCT+GGG | 0.413771 | tig0031256:-24868 | Msa1446000:CDS |
| ATTGTCTGGGTTGTACTCGT+TGG | 0.414145 | tig0031256:-24855 | Msa1446000:CDS |
| GAAATTATACTGGCTGTTAG+TGG | 0.416596 | tig0031256:-24577 | Msa1446000:CDS |
| TTCATGAAATGTTCCATATG+AGG | 0.417496 | tig0031256:+19981 | None:intergenic |
| TTGTCTGGGTTGTACTCGTT+GGG | 0.421207 | tig0031256:-24854 | Msa1446000:CDS |
| TGGGCTCCCGAAGGTGGTTA+TGG | 0.421491 | tig0031256:-24694 | Msa1446000:intron |
| CATTGATGTCATTTATCTGT+GGG | 0.426287 | tig0031256:-24900 | None:intergenic |
| TGGGTTGTACTCGTTGGGCT+TGG | 0.426664 | tig0031256:-24849 | Msa1446000:CDS |
| TTCACTTGGTGCTGGGGTGG+TGG | 0.432423 | tig0031256:-24365 | Msa1446000:CDS |
| ACCTCGGACAACCACTGCTC+TGG | 0.435017 | tig0031256:-23823 | Msa1446000:CDS |
| CTTGGACAAACGGAATTTCA+TGG | 0.437460 | tig0031256:-24505 | Msa1446000:CDS |
| TGATCGTTCGGAAATTATAC+TGG | 0.443999 | tig0031256:-24587 | Msa1446000:CDS |
| CGTGGACGACACAGGTCATA+TGG | 0.445994 | tig0031256:-19854 | Msa1446000:CDS |
| ATATCATACTAAACTAAAAT+GGG | 0.447087 | tig0031256:+19722 | None:intergenic |
| ATTGTCTTGCGGAAGGATTA+CGG | 0.453840 | tig0031256:-24655 | Msa1446000:CDS |
| CGGCAGCGCAAAAGATGGTT+AGG | 0.460075 | tig0031256:-20095 | Msa1446000:CDS |
| CAATAAACACACTCAAGTAT+AGG | 0.464088 | tig0031256:+24874 | None:intergenic |
| TTCATAATCGCGACAAATTG+GGG | 0.469907 | tig0031256:-24321 | Msa1446000:CDS |
| TGATAACAAGCTTGGACAAA+CGG | 0.478078 | tig0031256:-24515 | Msa1446000:CDS |
| GGGACATTCACTTGGTGCTG+GGG | 0.479013 | tig0031256:-24371 | Msa1446000:CDS |
| ACATTCACTTGGTGCTGGGG+TGG | 0.482845 | tig0031256:-24368 | Msa1446000:CDS |
| GCTTACATCGAGAGCCCGTT+GGG | 0.485898 | tig0031256:+21117 | None:intergenic |
| ATAACAAACGATCAGAAAGT+TGG | 0.487511 | tig0031256:-19903 | Msa1446000:CDS |
| ATACCTTGATCATGATCGTT+CGG | 0.489378 | tig0031256:-24599 | Msa1446000:CDS |
| ATGATGGAGCTTCTGAAAGC+TGG | 0.492370 | tig0031256:+19559 | None:intergenic |
| GGTTATTGAAGGCAGCGGAT+TGG | 0.493396 | tig0031256:-24465 | Msa1446000:CDS |
| ATAAACGTCAACATATAAGT+TGG | 0.494177 | tig0031256:+24394 | None:intergenic |
| TTCCGCAAGACAATCCAATC+AGG | 0.503167 | tig0031256:+24664 | None:intergenic |
| TGTTCATAATGGGTTATTGA+AGG | 0.504548 | tig0031256:-24476 | Msa1446000:CDS |
| GAAAGTTGGAATGAATTTGT+CGG | 0.506851 | tig0031256:-19889 | Msa1446000:CDS |
| GATTGAGAAGGAATCCCAAC+GGG | 0.509870 | tig0031256:-21131 | Msa1446000:CDS |
| AAGAGTACCGTGCAGCCCTT+CGG | 0.515446 | tig0031256:-20044 | Msa1446000:CDS |
| CCAGGTGCATACAGACGCCT+TGG | 0.522285 | tig0031256:+22704 | None:intergenic |
| ACGTTTATGGGACATTCACT+TGG | 0.533534 | tig0031256:-24379 | Msa1446000:CDS |
| GGTACTGCTGTCCTAACAAT+GGG | 0.534930 | tig0031256:+21220 | None:intergenic |
| TTTCCGAACGATCATGATCA+AGG | 0.536303 | tig0031256:+24596 | None:intergenic |
| AGCTTACATCGAGAGCCCGT+TGG | 0.546689 | tig0031256:+21116 | None:intergenic |
| GATCAACTCTATCGTACTAC+AGG | 0.548222 | tig0031256:-24215 | Msa1446000:intron |
| AGTTAATGCTAGAGAAAGAT+CGG | 0.550817 | tig0031256:-20131 | Msa1446000:CDS |
| CTGCCCTCCGAAGGGCTGCA+CGG | 0.552923 | tig0031256:+20037 | None:intergenic |
| CAGGTGCATACAGACGCCTT+GGG | 0.556377 | tig0031256:+22705 | None:intergenic |
| AGTACCGTGCAGCCCTTCGG+AGG | 0.557733 | tig0031256:-20041 | Msa1446000:CDS |
| CATACATCGGGCAGGAGCAA+TGG | 0.558494 | tig0031256:+24270 | None:intergenic |
| TGATCAAGGTATATCATGTA+CGG | 0.559156 | tig0031256:+24610 | None:intergenic |
| GCATTGATGTCATTTATCTG+TGG | 0.559899 | tig0031256:-24901 | None:intergenic |
| TGATTGGATTGTCTTGCGGA+AGG | 0.561618 | tig0031256:-24662 | Msa1446000:CDS |
| TGCCATCCTTTGGATTGAGA+AGG | 0.562134 | tig0031256:-21143 | Msa1446000:CDS |
| ATGCGGAATGGGAGGTTCTG+AGG | 0.566241 | tig0031256:-24435 | Msa1446000:intron |
| TGATCAAACCTTCCATCGAC+AGG | 0.566884 | tig0031256:+21199 | None:intergenic |
| CCAAAGCAACTGCCCTCCGA+AGG | 0.567097 | tig0031256:+20028 | None:intergenic |
| CCAAGGCGTCTGTATGCACC+TGG | 0.569450 | tig0031256:-22704 | Msa1446000:CDS |
| TAATGGGTTATTGAAGGCAG+CGG | 0.572333 | tig0031256:-24470 | Msa1446000:CDS |
| GATTCCGGCAGCGCAAAAGA+TGG | 0.573267 | tig0031256:-20100 | Msa1446000:CDS |
| CTTAAAGGATACTTGCACAC+TGG | 0.573680 | tig0031256:-22747 | Msa1446000:CDS |
| ATTTCATGAAATTGATGCTG+AGG | 0.574640 | tig0031256:-19968 | Msa1446000:CDS |
| TTCCTTCTCAATCCAAAGGA+TGG | 0.575356 | tig0031256:+21141 | None:intergenic |
| ATCCTGATTGGATTGTCTTG+CGG | 0.575742 | tig0031256:-24666 | Msa1446000:CDS |
| GGGATTCCTTCTCAATCCAA+AGG | 0.576786 | tig0031256:+21137 | None:intergenic |
| TTGAGAGACATACATCGGGC+AGG | 0.577619 | tig0031256:+24262 | None:intergenic |
| CAAATTGAGAGACATACATC+GGG | 0.583019 | tig0031256:+24258 | None:intergenic |
| GAGGAAGGTGAGTATGCTTG+AGG | 0.590075 | tig0031256:+20000 | None:intergenic |
| AGAAGAAACTTCGAGACCCA+AGG | 0.591979 | tig0031256:-22721 | Msa1446000:CDS |
| GAAGATTCTGGAAGATCTAG+TGG | 0.592068 | tig0031256:-19946 | Msa1446000:CDS |
| CAAAGCAACTGCCCTCCGAA+GGG | 0.592141 | tig0031256:+20029 | None:intergenic |
| AGGTACTGCTGTCCTAACAA+TGG | 0.595170 | tig0031256:+21219 | None:intergenic |
| TGATCGTTTGTTATGAGACA+AGG | 0.595396 | tig0031256:+19912 | None:intergenic |
| TGTCGGACGCATGTTTGACG+TGG | 0.597332 | tig0031256:-19872 | Msa1446000:CDS |
| TAGTGGACTCAATTTAGCAA+AGG | 0.598653 | tig0031256:-24560 | Msa1446000:CDS |
| TCTCAATCCAAAGGATGGCA+TGG | 0.607183 | tig0031256:+21146 | None:intergenic |
| CAGCAGTACCTGTCGATGGA+AGG | 0.608153 | tig0031256:-21207 | Msa1446000:CDS |
| TCCAGAGCAGTGGTTGTCCG+AGG | 0.612433 | tig0031256:+23822 | None:intergenic |
| TGAAATGTTCCATATGAGGA+AGG | 0.619523 | tig0031256:+19985 | None:intergenic |
| ACTGCTGTCCTAACAATGGG+TGG | 0.627208 | tig0031256:+21223 | None:intergenic |
| CACATGAGACACAATAAACA+AGG | 0.628531 | tig0031256:+22770 | None:intergenic |
| ATGTTTGACGTGGACGACAC+AGG | 0.631845 | tig0031256:-19862 | Msa1446000:CDS |
| GTAGACGCTTTCCAGAGCAG+TGG | 0.632377 | tig0031256:+23812 | None:intergenic |
| CCAAATTGAGAGACATACAT+CGG | 0.633196 | tig0031256:+24257 | None:intergenic |
| ACAATGTGATAGAGACGACC+AGG | 0.636901 | tig0031256:+22686 | None:intergenic |
| TGTACGGAGTAACACAACCT+TGG | 0.640364 | tig0031256:+24626 | None:intergenic |
| CAATTTGGCTGTAAGATATG+CGG | 0.643247 | tig0031256:-24242 | Msa1446000:CDS |
| AGGACAGCAGTACCTGTCGA+TGG | 0.651084 | tig0031256:-21211 | Msa1446000:CDS |
| GGATTGAGAAGGAATCCCAA+CGG | 0.658153 | tig0031256:-21132 | Msa1446000:CDS |
| TGTCTTGCGGAAGGATTACG+GGG | 0.660199 | tig0031256:-24653 | Msa1446000:CDS |
| AGCACCATACTGTACCTGAA+GGG | 0.668622 | tig0031256:+22653 | None:intergenic |
| AAGGATTACGGGGATAACCA+AGG | 0.692832 | tig0031256:-24643 | Msa1446000:CDS |
| GGTTCTGAGGAAGTTAATAG+CGG | 0.704402 | tig0031256:-24422 | Msa1446000:CDS |
| GGACAAACGGAATTTCATGG+TGG | 0.722297 | tig0031256:-24502 | Msa1446000:CDS |
| TCTAAATTACAATATTCACA+TGG | 0.730026 | tig0031256:+19669 | None:intergenic |
| ATTGGGGATACAGAGAGACA+AGG | 0.732263 | tig0031256:-24305 | Msa1446000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTAAAATTCATAATTT+TGG | + | tig0031256:21942-21961 | None:intergenic | 10.0% |
| !!! | TTTTTAAAATCTAAAACAAA+CGG | + | tig0031256:22064-22083 | None:intergenic | 10.0% |
| !!! | TTGTTTTAGATTTTAAAAAA+TGG | - | tig0031256:22065-22084 | Msa1446000:intron | 10.0% |
| !!! | CTTTTTTTTAAAATAGATTT+TGG | + | tig0031256:22473-22492 | None:intergenic | 10.0% |
| !! | ACAAATTTAAACAATTTATA+TGG | + | tig0031256:24169-24188 | None:intergenic | 10.0% |
| !! | TGATATAAAGAAATAATTTA+AGG | + | tig0031256:24654-24673 | None:intergenic | 10.0% |
| !! | ACTAAGTTTATAATAACAAA+AGG | + | tig0031256:20287-20306 | None:intergenic | 15.0% |
| !!! | TTAATTTATTCACAGATTTT+AGG | - | tig0031256:21306-21325 | Msa1446000:intron | 15.0% |
| !!! | TTTTAAAATCTAAAACAAAC+GGG | + | tig0031256:22063-22082 | None:intergenic | 15.0% |
| !!! | TTCCTTTGTATTTTTAAAAA+TGG | - | tig0031256:22091-22110 | Msa1446000:intron | 15.0% |
| !!! | ATCCATTTTTAAAAATACAA+AGG | + | tig0031256:22096-22115 | None:intergenic | 15.0% |
| !!! | AAAATTTGTGATTTTTACTA+TGG | + | tig0031256:22228-22247 | None:intergenic | 15.0% |
| !!! | TTTAAGATAAACTATTCAAA+CGG | - | tig0031256:22378-22397 | Msa1446000:intron | 15.0% |
| !!! | TTTTAACAAAGAAATTTTCA+AGG | + | tig0031256:22423-22442 | None:intergenic | 15.0% |
| !! | TACTCTAGTAAAAATAAAAA+TGG | - | tig0031256:22915-22934 | Msa1446000:intron | 15.0% |
| !! | ACTCTAGTAAAAATAAAAAT+GGG | - | tig0031256:22916-22935 | Msa1446000:intron | 15.0% |
| !! | ATATTATATACAACTAACAA+AGG | + | tig0031256:22967-22986 | None:intergenic | 15.0% |
| !! | TACAAAATATAAATAGAAAC+TGG | + | tig0031256:23587-23606 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAGTGTTTACTA+AGG | + | tig0031256:23759-23778 | None:intergenic | 15.0% |
| !! | AATTTCAACAATAATTTAGA+TGG | - | tig0031256:23846-23865 | Msa1446000:intron | 15.0% |
| !!! | TAATTGATAACATGTATATT+TGG | + | tig0031256:23987-24006 | None:intergenic | 15.0% |
| !!! | AATAATAATTTAAAACCTTG+AGG | + | tig0031256:24275-24294 | None:intergenic | 15.0% |
| !! | ATATCATACTAAACTAAAAT+GGG | + | tig0031256:24746-24765 | None:intergenic | 15.0% |
| !! | AATATCATACTAAACTAAAA+TGG | + | tig0031256:24747-24766 | None:intergenic | 15.0% |
| !! | AAATTAATTGTTGATGTCTT+CGG | + | tig0031256:20742-20761 | None:intergenic | 20.0% |
| !! | CTTAGTTTAATTATGCTTAA+GGG | + | tig0031256:20952-20971 | None:intergenic | 20.0% |
| !! | ACTTAGTTTAATTATGCTTA+AGG | + | tig0031256:20953-20972 | None:intergenic | 20.0% |
| !! | GTATATAAAATACATTCAGT+AGG | + | tig0031256:21165-21184 | None:intergenic | 20.0% |
| !! | AGATGCAAATTAATGAATAA+TGG | + | tig0031256:21234-21253 | None:intergenic | 20.0% |
| !!! | CTGTGAATAAATTAAGTTTT+CGG | + | tig0031256:21301-21320 | None:intergenic | 20.0% |
| !! | TTTAATTAAAGTGACATCAA+TGG | - | tig0031256:21377-21396 | Msa1446000:intron | 20.0% |
| !!! | AATTTTTCATGAATATGCAT+TGG | - | tig0031256:21543-21562 | Msa1446000:intron | 20.0% |
| !! | ATGAAAGAAATAACAATGTT+TGG | + | tig0031256:21605-21624 | None:intergenic | 20.0% |
| !!! | AAACATTGTTATTTCTTTCA+TGG | - | tig0031256:21604-21623 | Msa1446000:intron | 20.0% |
| !!! | TATAATAAGTTTTGGTCATT+TGG | - | tig0031256:22607-22626 | Msa1446000:intron | 20.0% |
| !!! | AAACTTATACAACTTTTCTA+TGG | + | tig0031256:22943-22962 | None:intergenic | 20.0% |
| !! | TTCATTGAAACATTTAAATG+TGG | + | tig0031256:23687-23706 | None:intergenic | 20.0% |
| !!! | CATTATTTGCTATTAGTTTT+GGG | - | tig0031256:24686-24705 | Msa1446000:intron | 20.0% |
| !! | TCTAAATTACAATATTCACA+TGG | + | tig0031256:24799-24818 | None:intergenic | 20.0% |
| ! | ATAAACGTCAACATATAAGT+TGG | + | tig0031256:20074-20093 | None:intergenic | 25.0% |
| ! | AACTTATATGTTGACGTTTA+TGG | - | tig0031256:20073-20092 | Msa1446000:CDS | 25.0% |
| ! | ACTTATATGTTGACGTTTAT+GGG | - | tig0031256:20074-20093 | Msa1446000:CDS | 25.0% |
| ! | CAACATTGACATGTTATAAA+AGG | - | tig0031256:20329-20348 | Msa1446000:intron | 25.0% |
| ! | TTGATAGATAAGAAATCATG+AGG | + | tig0031256:20560-20579 | None:intergenic | 25.0% |
| ! | AGTTCAGTTGAAAGATATAA+TGG | - | tig0031256:20970-20989 | Msa1446000:intron | 25.0% |
| ! | GTTCAGTTGAAAGATATAAT+GGG | - | tig0031256:20971-20990 | Msa1446000:intron | 25.0% |
| ! | AGAATATCATATTAACCAGT+TGG | + | tig0031256:21261-21280 | None:intergenic | 25.0% |
| !!! | AGATTTTAGGATTTGTTGAA+TGG | - | tig0031256:21319-21338 | Msa1446000:intron | 25.0% |
| !! | ATTGAAAATCTTATTTCCTG+TGG | + | tig0031256:21526-21545 | None:intergenic | 25.0% |
| ! | TCTTTGTAACTTTCTAATCA+TGG | - | tig0031256:21971-21990 | Msa1446000:intron | 25.0% |
| ! | TAAGAAGAGTCAATTAATTG+CGG | - | tig0031256:22001-22020 | Msa1446000:intron | 25.0% |
| ! | AACATGATGAATTTGATCTA+AGG | - | tig0031256:22027-22046 | Msa1446000:intron | 25.0% |
| ! | ACATGATGAATTTGATCTAA+GGG | - | tig0031256:22028-22047 | Msa1446000:intron | 25.0% |
| ! | TAACCAAATGATGAAATACT+TGG | - | tig0031256:22347-22366 | Msa1446000:intron | 25.0% |
| ! | ATTCCAAGTATTTCATCATT+TGG | + | tig0031256:22353-22372 | None:intergenic | 25.0% |
| !! | TTCATAAGATTTTTGCTGAA+AGG | - | tig0031256:22540-22559 | Msa1446000:intron | 25.0% |
| ! | TTGAGAAGAAAAAAAATCAC+AGG | + | tig0031256:22636-22655 | None:intergenic | 25.0% |
| !!! | GATTTTTTTTCTTCTCAAGT+TGG | - | tig0031256:22638-22657 | Msa1446000:intron | 25.0% |
| ! | CACATCAACACAAAATAATT+TGG | - | tig0031256:22772-22791 | Msa1446000:CDS | 25.0% |
| ! | ATTGTTCATAATAGAACAAC+TGG | - | tig0031256:23004-23023 | Msa1446000:intron | 25.0% |
| ! | AAGTTTACCTCACTAAATTA+CGG | - | tig0031256:23083-23102 | Msa1446000:intron | 25.0% |
| ! | ACGCATTGAATTCAATAATT+TGG | + | tig0031256:23157-23176 | None:intergenic | 25.0% |
| !!! | CTTAATTCATTTTGAAACTC+TGG | - | tig0031256:23445-23464 | Msa1446000:intron | 25.0% |
| ! | AAGTTCAAACCAATATTTGT+TGG | - | tig0031256:23490-23509 | Msa1446000:intron | 25.0% |
| !!! | CCTTATTTTCCAACAAATAT+TGG | + | tig0031256:23502-23521 | None:intergenic | 25.0% |
| !! | CCAATATTTGTTGGAAAATA+AGG | - | tig0031256:23499-23518 | Msa1446000:intron | 25.0% |
| ! | ATGAAGTTATTTATTCATGC+AGG | - | tig0031256:23702-23721 | Msa1446000:intron | 25.0% |
| ! | TGAAGTTATTTATTCATGCA+GGG | - | tig0031256:23703-23722 | Msa1446000:intron | 25.0% |
| !!! | AAAAAGTGTTTACTAAGGTT+GGG | + | tig0031256:23754-23773 | None:intergenic | 25.0% |
| !!! | AAAAAAGTGTTTACTAAGGT+TGG | + | tig0031256:23755-23774 | None:intergenic | 25.0% |
| ! | TAGTTAATATGTTCACTGAA+TGG | - | tig0031256:23888-23907 | Msa1446000:intron | 25.0% |
| ! | GTTAATGATGTTCAAAATCA+TGG | - | tig0031256:24045-24064 | Msa1446000:intron | 25.0% |
| ! | GTTAATGCAGTTTAAATACA+TGG | + | tig0031256:24147-24166 | None:intergenic | 25.0% |
| ! | TTTCTTTATATCAAGCTTCA+TGG | - | tig0031256:24661-24680 | Msa1446000:CDS | 25.0% |
| !!! | GCATTATTTGCTATTAGTTT+TGG | - | tig0031256:24685-24704 | Msa1446000:intron | 25.0% |
| !! | ATTGTAATTTAGAGCCTATT+TGG | - | tig0031256:24806-24825 | Msa1446000:intron | 25.0% |
| ! | CTAAGAAGTTTAATCCAAAT+AGG | + | tig0031256:24823-24842 | None:intergenic | 25.0% |
| ! | CTATTTGGATTAAACTTCTT+AGG | - | tig0031256:24821-24840 | Msa1446000:CDS | 25.0% |
| CAATAAACACACTCAAGTAT+AGG | + | tig0031256:19594-19613 | None:intergenic | 30.0% | |
| AAAAAATGTCTATACTCTGC+AGG | - | tig0031256:19639-19658 | Msa1446000:three_prime_UTR | 30.0% | |
| TGATCAAGGTATATCATGTA+CGG | + | tig0031256:19858-19877 | None:intergenic | 30.0% | |
| !! | ATGGTGGATATGTTCATAAT+GGG | - | tig0031256:19979-19998 | Msa1446000:CDS | 30.0% |
| !! | TGTTCATAATGGGTTATTGA+AGG | - | tig0031256:19989-20008 | Msa1446000:CDS | 30.0% |
| AATAAATGAACACCTGCTTT+GGG | - | tig0031256:20425-20444 | Msa1446000:intron | 30.0% | |
| CAATAAAACTGAACTGAAGT+CGG | + | tig0031256:20707-20726 | None:intergenic | 30.0% | |
| TTCATGCTTCAAATCCAAAA+GGG | - | tig0031256:21005-21024 | Msa1446000:intron | 30.0% | |
| AGCTTAAAGCTGTTAAGTTT+AGG | + | tig0031256:21073-21092 | None:intergenic | 30.0% | |
| GTTCAGCTGATATGATAAAT+AGG | + | tig0031256:21187-21206 | None:intergenic | 30.0% | |
| ! | TCATTTTACAAGTGTCTCAA+AGG | - | tig0031256:21400-21419 | Msa1446000:intron | 30.0% |
| ! | CATTTTACAAGTGTCTCAAA+GGG | - | tig0031256:21401-21420 | Msa1446000:intron | 30.0% |
| ! | ATTTTACAAGTGTCTCAAAG+GGG | - | tig0031256:21402-21421 | Msa1446000:intron | 30.0% |
| ! | TAAATTCAGCTTTTGCCATT+AGG | - | tig0031256:21572-21591 | Msa1446000:intron | 30.0% |
| CATGATGAATTTGATCTAAG+GGG | - | tig0031256:22029-22048 | Msa1446000:intron | 30.0% | |
| ! | AATTTGATCTAAGGGGATTT+TGG | - | tig0031256:22036-22055 | Msa1446000:intron | 30.0% |
| ! | ATTTGATCTAAGGGGATTTT+GGG | - | tig0031256:22037-22056 | Msa1446000:intron | 30.0% |
| TTGAATGTAACTACATGTGT+CGG | - | tig0031256:22808-22827 | Msa1446000:intron | 30.0% | |
| !! | AAAAGTGTTTACTAAGGTTG+GGG | + | tig0031256:23753-23772 | None:intergenic | 30.0% |
| AGTTAATGCTAGAGAAAGAT+CGG | - | tig0031256:24334-24353 | Msa1446000:CDS | 30.0% | |
| TTCATGAAATGTTCCATATG+AGG | + | tig0031256:24487-24506 | None:intergenic | 30.0% | |
| ATTTCATGAAATTGATGCTG+AGG | - | tig0031256:24497-24516 | Msa1446000:CDS | 30.0% | |
| ATAACAAACGATCAGAAAGT+TGG | - | tig0031256:24562-24581 | Msa1446000:CDS | 30.0% | |
| GAAAGTTGGAATGAATTTGT+CGG | - | tig0031256:24576-24595 | Msa1446000:CDS | 30.0% | |
| ACTTGAGTGTGTTTATTGTC+TGG | - | tig0031256:19596-19615 | Msa1446000:three_prime_UTR | 35.0% | |
| CTTGAGTGTGTTTATTGTCT+GGG | - | tig0031256:19597-19616 | Msa1446000:three_prime_UTR | 35.0% | |
| AATATTGTGCGACAAATTCG+TGG | + | tig0031256:19717-19736 | None:intergenic | 35.0% | |
| ATTAATGCCATAACCACCTT+CGG | + | tig0031256:19781-19800 | None:intergenic | 35.0% | |
| GTTATGGCATTAATCCTGAT+TGG | - | tig0031256:19787-19806 | Msa1446000:three_prime_UTR | 35.0% | |
| ATACCTTGATCATGATCGTT+CGG | - | tig0031256:19866-19885 | Msa1446000:CDS | 35.0% | |
| TGATCGTTCGGAAATTATAC+TGG | - | tig0031256:19878-19897 | Msa1446000:CDS | 35.0% | |
| ! | GAAATTATACTGGCTGTTAG+TGG | - | tig0031256:19888-19907 | Msa1446000:CDS | 35.0% |
| !! | TAGTGGACTCAATTTAGCAA+AGG | - | tig0031256:19905-19924 | Msa1446000:CDS | 35.0% |
| !! | GTTTTGCTTGATAACAAGCT+TGG | - | tig0031256:19942-19961 | Msa1446000:CDS | 35.0% |
| TGATAACAAGCTTGGACAAA+CGG | - | tig0031256:19950-19969 | Msa1446000:CDS | 35.0% | |
| !! | CATGGTGGATATGTTCATAA+TGG | - | tig0031256:19978-19997 | Msa1446000:CDS | 35.0% |
| CTTCATAATCGCGACAAATT+GGG | - | tig0031256:20143-20162 | Msa1446000:intron | 35.0% | |
| TTCATAATCGCGACAAATTG+GGG | - | tig0031256:20144-20163 | Msa1446000:intron | 35.0% | |
| CAAATTGAGAGACATACATC+GGG | + | tig0031256:20210-20229 | None:intergenic | 35.0% | |
| CCAAATTGAGAGACATACAT+CGG | + | tig0031256:20211-20230 | None:intergenic | 35.0% | |
| CAATTTGGCTGTAAGATATG+CGG | - | tig0031256:20223-20242 | Msa1446000:intron | 35.0% | |
| CAATAAATGAACACCTGCTT+TGG | - | tig0031256:20424-20443 | Msa1446000:intron | 35.0% | |
| TAAATTCCAATTCCCAAAGC+AGG | + | tig0031256:20440-20459 | None:intergenic | 35.0% | |
| TTGAAGCATGAACTAAGTGT+AGG | + | tig0031256:20997-21016 | None:intergenic | 35.0% | |
| GTTCATGCTTCAAATCCAAA+AGG | - | tig0031256:21004-21023 | Msa1446000:intron | 35.0% | |
| AAAAGGGATTGTACTTGACA+GGG | - | tig0031256:21021-21040 | Msa1446000:intron | 35.0% | |
| AAGTAAGTAGTGACTGATAG+AGG | + | tig0031256:21128-21147 | None:intergenic | 35.0% | |
| AATTTGCATCTGATTCCAAC+TGG | - | tig0031256:21243-21262 | Msa1446000:intron | 35.0% | |
| ! | TAAGTTTTCGGTATTCATCG+AGG | + | tig0031256:21289-21308 | None:intergenic | 35.0% |
| TAAGTGATAAGAGCTTAACC+TGG | + | tig0031256:21462-21481 | None:intergenic | 35.0% | |
| CACATGAGACACAATAAACA+AGG | + | tig0031256:21698-21717 | None:intergenic | 35.0% | |
| ATTGTGTCTCATGTGCTTAA+AGG | - | tig0031256:21703-21722 | Msa1446000:intron | 35.0% | |
| TGGATTACATAATGACCACA+AGG | + | tig0031256:21922-21941 | None:intergenic | 35.0% | |
| ATATCGTGTAAATTCTGCTC+AGG | - | tig0031256:22495-22514 | Msa1446000:intron | 35.0% | |
| ! | AAAGTGCCAGTTATGAAACA+CGG | - | tig0031256:22731-22750 | Msa1446000:CDS | 35.0% |
| CATCAAACCGTAATTTAGTG+AGG | + | tig0031256:23093-23112 | None:intergenic | 35.0% | |
| !! | TGCAGCAGTAATTTCTAGTT+TGG | - | tig0031256:23192-23211 | Msa1446000:intron | 35.0% |
| TTCTACCAAAACAGTAGACA+TGG | - | tig0031256:23399-23418 | Msa1446000:intron | 35.0% | |
| ! | CTCTTTGCTGTATCAGAATA+TGG | - | tig0031256:23533-23552 | Msa1446000:intron | 35.0% |
| TTTGGACATCTGCAAAATCA+TGG | + | tig0031256:23969-23988 | None:intergenic | 35.0% | |
| AAGTTTACACCTGAAAATCG+TGG | - | tig0031256:24023-24042 | Msa1446000:intron | 35.0% | |
| ! | CATCATTAACCACGATTTTC+AGG | + | tig0031256:24035-24054 | None:intergenic | 35.0% |
| GGTTAATTGTGTTCAGTTGA+TGG | - | tig0031256:24066-24085 | Msa1446000:intron | 35.0% | |
| GATGATTCATCGATACAACA+GGG | + | tig0031256:24108-24127 | None:intergenic | 35.0% | |
| ACATGGTTAATCATGTTCAG+TGG | + | tig0031256:24130-24149 | None:intergenic | 35.0% | |
| GTTGAATTCTTTCTACCTCA+AGG | - | tig0031256:24257-24276 | Msa1446000:CDS | 35.0% | |
| TGAAATGTTCCATATGAGGA+AGG | + | tig0031256:24483-24502 | None:intergenic | 35.0% | |
| !! | TGATCGTTTGTTATGAGACA+AGG | + | tig0031256:24556-24575 | None:intergenic | 35.0% |
| !!! | TTGCTATTAGTTTTGGGTCA+AGG | - | tig0031256:24692-24711 | Msa1446000:intron | 35.0% |
| !!! | TGCTATTAGTTTTGGGTCAA+GGG | - | tig0031256:24693-24712 | Msa1446000:intron | 35.0% |
| !!! | TTGTGATGCTCATTTTAGCT+TGG | - | tig0031256:24770-24789 | Msa1446000:intron | 35.0% |
| AGGCTACGAGAGTGAAAATT+GGG | - | tig0031256:19659-19678 | Msa1446000:three_prime_UTR | 40.0% | |
| TTAATGCCATAACCACCTTC+GGG | + | tig0031256:19780-19799 | None:intergenic | 40.0% | |
| ATCCTGATTGGATTGTCTTG+CGG | - | tig0031256:19799-19818 | Msa1446000:three_prime_UTR | 40.0% | |
| ATTGTCTTGCGGAAGGATTA+CGG | - | tig0031256:19810-19829 | Msa1446000:three_prime_UTR | 40.0% | |
| TTTCCGAACGATCATGATCA+AGG | + | tig0031256:19872-19891 | None:intergenic | 40.0% | |
| CTTGGACAAACGGAATTTCA+TGG | - | tig0031256:19960-19979 | Msa1446000:CDS | 40.0% | |
| !! | TAATGGGTTATTGAAGGCAG+CGG | - | tig0031256:19995-20014 | Msa1446000:CDS | 40.0% |
| ! | ATTGGGTTTTTGATGCGGAA+TGG | - | tig0031256:20018-20037 | Msa1446000:CDS | 40.0% |
| ! | TTGGGTTTTTGATGCGGAAT+GGG | - | tig0031256:20019-20038 | Msa1446000:CDS | 40.0% |
| !! | GGTTCTGAGGAAGTTAATAG+CGG | - | tig0031256:20043-20062 | Msa1446000:CDS | 40.0% |
| ACGTTTATGGGACATTCACT+TGG | - | tig0031256:20086-20105 | Msa1446000:CDS | 40.0% | |
| GCTTCATAATCGCGACAAAT+TGG | - | tig0031256:20142-20161 | Msa1446000:intron | 40.0% | |
| CCGATGTATGTCTCTCAATT+TGG | - | tig0031256:20208-20227 | Msa1446000:intron | 40.0% | |
| GATCAACTCTATCGTACTAC+AGG | - | tig0031256:20250-20269 | Msa1446000:intron | 40.0% | |
| AACTCTATCGTACTACAGGT+CGG | - | tig0031256:20254-20273 | Msa1446000:intron | 40.0% | |
| AGAACCTAACCATAAAAGCG+AGG | - | tig0031256:20532-20551 | Msa1446000:intron | 40.0% | |
| GAACCTAACCATAAAAGCGA+GGG | - | tig0031256:20533-20552 | Msa1446000:intron | 40.0% | |
| !! | ACTTGTTTTTCTGCCTAAGC+AGG | - | tig0031256:20609-20628 | Msa1446000:intron | 40.0% |
| GGTAAAAAATCGTCCTGCTT+AGG | + | tig0031256:20625-20644 | None:intergenic | 40.0% | |
| !!! | AGCAGGACGATTTTTTACCT+CGG | - | tig0031256:20626-20645 | Msa1446000:intron | 40.0% |
| GTTATCAAATTGTCGCATGG+TGG | - | tig0031256:20858-20877 | Msa1446000:intron | 40.0% | |
| ! | CTGTCAAGTACAATCCCTTT+TGG | + | tig0031256:21022-21041 | None:intergenic | 40.0% |
| CAAAAGGGATTGTACTTGAC+AGG | - | tig0031256:21020-21039 | Msa1446000:intron | 40.0% | |
| TGTCAGAGACAGAAGTCATA+AGG | - | tig0031256:21047-21066 | Msa1446000:intron | 40.0% | |
| !! | AGGATTTGTTGAATGGAGTG+TGG | - | tig0031256:21326-21345 | Msa1446000:intron | 40.0% |
| TCATACTGTCCACAACATGT+CGG | + | tig0031256:21486-21505 | None:intergenic | 40.0% | |
| GAGTTCACAATTCTAACCAC+AGG | - | tig0031256:21507-21526 | Msa1446000:intron | 40.0% | |
| ! | ATGTTTGGAGCTCATCCTAA+TGG | + | tig0031256:21590-21609 | None:intergenic | 40.0% |
| !! | CAGTGGTTGTTTTCCTTTCT+TGG | - | tig0031256:21665-21684 | Msa1446000:intron | 40.0% |
| ! | TGTTTTCCTTTCTTGGCAGT+TGG | - | tig0031256:21672-21691 | Msa1446000:intron | 40.0% |
| CTTAAAGGATACTTGCACAC+TGG | - | tig0031256:21718-21737 | Msa1446000:intron | 40.0% | |
| ! | TAGTTCAGTAAGGCGTCATA+TGG | + | tig0031256:21877-21896 | None:intergenic | 40.0% |
| TCGTCCTTGTTAGTTCAGTA+AGG | + | tig0031256:21887-21906 | None:intergenic | 40.0% | |
| GAAGAGTCAATTAATTGCGG+AGG | - | tig0031256:22004-22023 | Msa1446000:intron | 40.0% | |
| TGAAAGGTTTACACAGCTGT+AGG | - | tig0031256:22556-22575 | Msa1446000:intron | 40.0% | |
| TTCCAAACCCAATCAGTTTG+TGG | - | tig0031256:22694-22713 | Msa1446000:CDS | 40.0% | |
| TCCAAACCCAATCAGTTTGT+GGG | - | tig0031256:22695-22714 | Msa1446000:CDS | 40.0% | |
| TTGTGTCCGTGTTTCATAAC+TGG | + | tig0031256:22740-22759 | None:intergenic | 40.0% | |
| AATCTTCCTAACCTGCAATC+AGG | + | tig0031256:23221-23240 | None:intergenic | 40.0% | |
| GAAGATTTCCACCCATTGTT+AGG | - | tig0031256:23234-23253 | Msa1446000:intron | 40.0% | |
| TTCCTTCTCAATCCAAAGGA+TGG | + | tig0031256:23327-23346 | None:intergenic | 40.0% | |
| ! | GTATGCCATGTCTACTGTTT+TGG | + | tig0031256:23407-23426 | None:intergenic | 40.0% |
| GTAAACTTGAGCACAAACTG+TGG | + | tig0031256:24011-24030 | None:intergenic | 40.0% | |
| GGATGATTCATCGATACAAC+AGG | + | tig0031256:24109-24128 | None:intergenic | 40.0% | |
| GCTAGAGAAAGATCGGAATA+TGG | - | tig0031256:24341-24360 | Msa1446000:CDS | 40.0% | |
| AGATCGGAATATGGAGATTC+CGG | - | tig0031256:24350-24369 | Msa1446000:CDS | 40.0% | |
| ATTGATGCTGAGGAAGATTC+TGG | - | tig0031256:24507-24526 | Msa1446000:CDS | 40.0% | |
| ! | GAAGATTCTGGAAGATCTAG+TGG | - | tig0031256:24519-24538 | Msa1446000:CDS | 40.0% |
| ATTGTCTGGGTTGTACTCGT+TGG | - | tig0031256:19610-19629 | Msa1446000:three_prime_UTR | 45.0% | |
| TTGTCTGGGTTGTACTCGTT+GGG | - | tig0031256:19611-19630 | Msa1446000:three_prime_UTR | 45.0% | |
| CAGGCTACGAGAGTGAAAAT+TGG | - | tig0031256:19658-19677 | Msa1446000:three_prime_UTR | 45.0% | |
| GGCTACGAGAGTGAAAATTG+GGG | - | tig0031256:19660-19679 | Msa1446000:three_prime_UTR | 45.0% | |
| CAAACTCTTCTGCAGTAGCT+AGG | + | tig0031256:19686-19705 | None:intergenic | 45.0% | |
| GTGCGACAAATTCGTGGTAT+AGG | + | tig0031256:19711-19730 | None:intergenic | 45.0% | |
| ATGATATACGCAACCCTCAG+TGG | - | tig0031256:19751-19770 | Msa1446000:three_prime_UTR | 45.0% | |
| TGATATACGCAACCCTCAGT+GGG | - | tig0031256:19752-19771 | Msa1446000:three_prime_UTR | 45.0% | |
| TTCCGCAAGACAATCCAATC+AGG | + | tig0031256:19804-19823 | None:intergenic | 45.0% | |
| TGATTGGATTGTCTTGCGGA+AGG | - | tig0031256:19803-19822 | Msa1446000:three_prime_UTR | 45.0% | |
| TTGTCTTGCGGAAGGATTAC+GGG | - | tig0031256:19811-19830 | Msa1446000:three_prime_UTR | 45.0% | |
| AAGGATTACGGGGATAACCA+AGG | - | tig0031256:19822-19841 | Msa1446000:exon | 45.0% | |
| TGTACGGAGTAACACAACCT+TGG | + | tig0031256:19842-19861 | None:intergenic | 45.0% | |
| GGACAAACGGAATTTCATGG+TGG | - | tig0031256:19963-19982 | Msa1446000:CDS | 45.0% | |
| ! | GTTATTGAAGGCAGCGGATT+GGG | - | tig0031256:20001-20020 | Msa1446000:CDS | 45.0% |
| !!! | AGCGGATTGGGTTTTTGATG+CGG | - | tig0031256:20013-20032 | Msa1446000:CDS | 45.0% |
| ATTGGGGATACAGAGAGACA+AGG | - | tig0031256:20160-20179 | Msa1446000:intron | 45.0% | |
| !! | TGAACACCTGCTTTGGGAAT+TGG | - | tig0031256:20431-20450 | Msa1446000:intron | 45.0% |
| !!! | GCGTCTACAAGTCACTTTTG+TGG | - | tig0031256:20668-20687 | Msa1446000:intron | 45.0% |
| ATGTTGCCTCTCTACTCAGA+TGG | + | tig0031256:20772-20791 | None:intergenic | 45.0% | |
| CGCGTTATCAAATTGTCGCA+TGG | - | tig0031256:20855-20874 | Msa1446000:intron | 45.0% | |
| TACCAGCCACCATAGGTATT+AGG | - | tig0031256:20918-20937 | Msa1446000:intron | 45.0% | |
| TTGCAGCCTAATACCTATGG+TGG | + | tig0031256:20927-20946 | None:intergenic | 45.0% | |
| GTGTTGCAGCCTAATACCTA+TGG | + | tig0031256:20930-20949 | None:intergenic | 45.0% | |
| TATCAGCTGAACGCTTCTCT+TGG | - | tig0031256:21195-21214 | Msa1446000:CDS | 45.0% | |
| CTTAACCTGGTAACCTCAAG+GGG | + | tig0031256:21449-21468 | None:intergenic | 45.0% | |
| GCTTAACCTGGTAACCTCAA+GGG | + | tig0031256:21450-21469 | None:intergenic | 45.0% | |
| AGCTTAACCTGGTAACCTCA+AGG | + | tig0031256:21451-21470 | None:intergenic | 45.0% | |
| ATCACTTAGCCGACATGTTG+TGG | - | tig0031256:21474-21493 | Msa1446000:intron | 45.0% | |
| ! | TCCAGCTTTATGAGCTACAG+TGG | - | tig0031256:21648-21667 | Msa1446000:intron | 45.0% |
| ACCACTGTAGCTCATAAAGC+TGG | + | tig0031256:21652-21671 | None:intergenic | 45.0% | |
| AGAAGAAACTTCGAGACCCA+AGG | - | tig0031256:21744-21763 | Msa1446000:intron | 45.0% | |
| ACAATGTGATAGAGACGACC+AGG | + | tig0031256:21782-21801 | None:intergenic | 45.0% | |
| AAAGCCCTTCAGGTACAGTA+TGG | - | tig0031256:21808-21827 | Msa1446000:intron | 45.0% | |
| AGCACCATACTGTACCTGAA+GGG | + | tig0031256:21815-21834 | None:intergenic | 45.0% | |
| GACGCCTTACTGAACTAACA+AGG | - | tig0031256:21880-21899 | Msa1446000:intron | 45.0% | |
| CGATCTTCTGATAGTCCTTG+TGG | - | tig0031256:21904-21923 | Msa1446000:intron | 45.0% | |
| TCGTGTAAATTCTGCTCAGG+AGG | - | tig0031256:22498-22517 | Msa1446000:intron | 45.0% | |
| CCAAACCCAATCAGTTTGTG+GGG | - | tig0031256:22696-22715 | Msa1446000:CDS | 45.0% | |
| AACTGGCACTTTGTTGAAGC+AGG | + | tig0031256:22723-22742 | None:intergenic | 45.0% | |
| ! | TACATGTGTCGGTGTCTTGT+TGG | - | tig0031256:22819-22838 | Msa1446000:intron | 45.0% |
| ACAACTGTACGTGTCAGACA+CGG | - | tig0031256:22842-22861 | Msa1446000:intron | 45.0% | |
| ! | TAGTTTGGCTTCCTGATTGC+AGG | - | tig0031256:23207-23226 | Msa1446000:intron | 45.0% |
| GGTACTGCTGTCCTAACAAT+GGG | + | tig0031256:23248-23267 | None:intergenic | 45.0% | |
| ! | AGGTACTGCTGTCCTAACAA+TGG | + | tig0031256:23249-23268 | None:intergenic | 45.0% |
| TGATCAAACCTTCCATCGAC+AGG | + | tig0031256:23269-23288 | None:intergenic | 45.0% | |
| TCTCAATCCAAAGGATGGCA+TGG | + | tig0031256:23322-23341 | None:intergenic | 45.0% | |
| TGCCATCCTTTGGATTGAGA+AGG | - | tig0031256:23322-23341 | Msa1446000:intron | 45.0% | |
| GGGATTCCTTCTCAATCCAA+AGG | + | tig0031256:23331-23350 | None:intergenic | 45.0% | |
| GGATTGAGAAGGAATCCCAA+CGG | - | tig0031256:23333-23352 | Msa1446000:intron | 45.0% | |
| GATTGAGAAGGAATCCCAAC+GGG | - | tig0031256:23334-23353 | Msa1446000:intron | 45.0% | |
| GCATACTCACCTTCCTCATA+TGG | - | tig0031256:24471-24490 | Msa1446000:CDS | 45.0% | |
| !!! | TTTTTTTTTATAATAAGTTT+TGG | - | tig0031256:22599-22618 | Msa1446000:intron | 5.0% |
| !! | TTAAATTATTATTTGATATA+CGG | - | tig0031256:24282-24301 | Msa1446000:CDS | 5.0% |
| TGTCTTGCGGAAGGATTACG+GGG | - | tig0031256:19812-19831 | Msa1446000:exon | 50.0% | |
| GGTTATTGAAGGCAGCGGAT+TGG | - | tig0031256:20000-20019 | Msa1446000:CDS | 50.0% | |
| ! | GGTTTTTGATGCGGAATGGG+AGG | - | tig0031256:20022-20041 | Msa1446000:CDS | 50.0% |
| !! | ATGGGACATTCACTTGGTGC+TGG | - | tig0031256:20092-20111 | Msa1446000:CDS | 50.0% |
| !! | TGGGACATTCACTTGGTGCT+GGG | - | tig0031256:20093-20112 | Msa1446000:CDS | 50.0% |
| TTGAGAGACATACATCGGGC+AGG | + | tig0031256:20206-20225 | None:intergenic | 50.0% | |
| !! | GGTCCCTCGCTTTTATGGTT+AGG | + | tig0031256:20539-20558 | None:intergenic | 50.0% |
| !! | CATGAGGTCCCTCGCTTTTA+TGG | + | tig0031256:20544-20563 | None:intergenic | 50.0% |
| ACCAAGCCATCTGAGTAGAG+AGG | - | tig0031256:20763-20782 | Msa1446000:intron | 50.0% | |
| CAAGTGTGCGTGCATTGTCA+TGG | - | tig0031256:20804-20823 | Msa1446000:intron | 50.0% | |
| ACAGAATCCGCCATGCCATA+AGG | + | tig0031256:20899-20918 | None:intergenic | 50.0% | |
| GATTCTGTACCAGCCACCAT+AGG | - | tig0031256:20911-20930 | Msa1446000:intron | 50.0% | |
| AGCCTAATACCTATGGTGGC+TGG | + | tig0031256:20923-20942 | None:intergenic | 50.0% | |
| ATTTGAGCTCTGTCCCCTTG+AGG | - | tig0031256:21433-21452 | Msa1446000:intron | 50.0% | |
| ACAAGGCCAACTGCCAAGAA+AGG | + | tig0031256:21681-21700 | None:intergenic | 50.0% | |
| GAGCACCATACTGTACCTGA+AGG | + | tig0031256:21816-21835 | None:intergenic | 50.0% | |
| CCCCACAAACTGATTGGGTT+TGG | + | tig0031256:22699-22718 | None:intergenic | 50.0% | |
| CAGGTCCCCACAAACTGATT+GGG | + | tig0031256:22704-22723 | None:intergenic | 50.0% | |
| CAACTGTACGTGTCAGACAC+GGG | - | tig0031256:22843-22862 | Msa1446000:intron | 50.0% | |
| CTCCCTGCGAGAAAAGACTT+CGG | - | tig0031256:23036-23055 | Msa1446000:intron | 50.0% | |
| ! | GACCGAAGTCTTTTCTCGCA+GGG | + | tig0031256:23041-23060 | None:intergenic | 50.0% |
| TGGCTTCCTGATTGCAGGTT+AGG | - | tig0031256:23212-23231 | Msa1446000:intron | 50.0% | |
| ACTGCTGTCCTAACAATGGG+TGG | + | tig0031256:23245-23264 | None:intergenic | 50.0% | |
| CTACTGACCATGCCATCCTT+TGG | - | tig0031256:23312-23331 | Msa1446000:intron | 50.0% | |
| ! | CTAACCATCTTTTGCGCTGC+CGG | + | tig0031256:24372-24391 | None:intergenic | 50.0% |
| GAGGAAGGTGAGTATGCTTG+AGG | + | tig0031256:24468-24487 | None:intergenic | 50.0% | |
| ATGTTTGACGTGGACGACAC+AGG | - | tig0031256:24603-24622 | Msa1446000:CDS | 50.0% | |
| TGGGTTGTACTCGTTGGGCT+TGG | - | tig0031256:19616-19635 | Msa1446000:three_prime_UTR | 55.0% | |
| ATGCGGAATGGGAGGTTCTG+AGG | - | tig0031256:20030-20049 | Msa1446000:CDS | 55.0% | |
| !! | GGGACATTCACTTGGTGCTG+GGG | - | tig0031256:20094-20113 | Msa1446000:CDS | 55.0% |
| !! | ACATTCACTTGGTGCTGGGG+TGG | - | tig0031256:20097-20116 | Msa1446000:CDS | 55.0% |
| CATACATCGGGCAGGAGCAA+TGG | + | tig0031256:20198-20217 | None:intergenic | 55.0% | |
| GTAGACGCTTTCCAGAGCAG+TGG | + | tig0031256:20656-20675 | None:intergenic | 55.0% | |
| GCCTCTCTACTCAGATGGCT+TGG | + | tig0031256:20767-20786 | None:intergenic | 55.0% | |
| AATTGTCGCATGGTGGCTCG+TGG | - | tig0031256:20865-20884 | Msa1446000:intron | 55.0% | |
| !! | TCCATGGCCTTATGGCATGG+CGG | - | tig0031256:20889-20908 | Msa1446000:intron | 55.0% |
| TCTGTCCCCTTGAGGTTACC+AGG | - | tig0031256:21441-21460 | Msa1446000:intron | 55.0% | |
| CAGGTGCATACAGACGCCTT+GGG | + | tig0031256:21763-21782 | None:intergenic | 55.0% | |
| TTGTCGAGCGAAAGCCCTTC+AGG | - | tig0031256:21798-21817 | Msa1446000:intron | 55.0% | |
| GCAGGTCCCCACAAACTGAT+TGG | + | tig0031256:22705-22724 | None:intergenic | 55.0% | |
| ! | CGAAGTCTTTTCTCGCAGGG+AGG | + | tig0031256:23038-23057 | None:intergenic | 55.0% |
| ! | CGACCGAAGTCTTTTCTCGC+AGG | + | tig0031256:23042-23061 | None:intergenic | 55.0% |
| CGAGAAAAGACTTCGGTCGC+TGG | - | tig0031256:23043-23062 | Msa1446000:intron | 55.0% | |
| AGGACAGCAGTACCTGTCGA+TGG | - | tig0031256:23254-23273 | Msa1446000:intron | 55.0% | |
| CAGCAGTACCTGTCGATGGA+AGG | - | tig0031256:23258-23277 | Msa1446000:intron | 55.0% | |
| GCTTACATCGAGAGCCCGTT+GGG | + | tig0031256:23351-23370 | None:intergenic | 55.0% | |
| AGCTTACATCGAGAGCCCGT+TGG | + | tig0031256:23352-23371 | None:intergenic | 55.0% | |
| GATTCCGGCAGCGCAAAAGA+TGG | - | tig0031256:24365-24384 | Msa1446000:CDS | 55.0% | |
| CGGCAGCGCAAAAGATGGTT+AGG | - | tig0031256:24370-24389 | Msa1446000:CDS | 55.0% | |
| !! | AAGAGTACCGTGCAGCCCTT+CGG | - | tig0031256:24421-24440 | Msa1446000:CDS | 55.0% |
| CAAAGCAACTGCCCTCCGAA+GGG | + | tig0031256:24439-24458 | None:intergenic | 55.0% | |
| TGTCGGACGCATGTTTGACG+TGG | - | tig0031256:24593-24612 | Msa1446000:CDS | 55.0% | |
| CGTGGACGACACAGGTCATA+TGG | - | tig0031256:24611-24630 | Msa1446000:CDS | 55.0% | |
| TGGGCTCCCGAAGGTGGTTA+TGG | - | tig0031256:19771-19790 | Msa1446000:three_prime_UTR | 60.0% | |
| !! | TTCACTTGGTGCTGGGGTGG+TGG | - | tig0031256:20100-20119 | Msa1446000:CDS | 60.0% |
| ACCTCGGACAACCACTGCTC+TGG | - | tig0031256:20642-20661 | Msa1446000:intron | 60.0% | |
| TCCAGAGCAGTGGTTGTCCG+AGG | + | tig0031256:20646-20665 | None:intergenic | 60.0% | |
| ! | CTCGTGGCTCCATGGCCTTA+TGG | - | tig0031256:20881-20900 | Msa1446000:intron | 60.0% |
| !! | GGCTCCATGGCCTTATGGCA+TGG | - | tig0031256:20886-20905 | Msa1446000:intron | 60.0% |
| TCCGCCATGCCATAAGGCCA+TGG | + | tig0031256:20893-20912 | None:intergenic | 60.0% | |
| CCAGGTGCATACAGACGCCT+TGG | + | tig0031256:21764-21783 | None:intergenic | 60.0% | |
| ! | CCAAGGCGTCTGTATGCACC+TGG | - | tig0031256:21761-21780 | Msa1446000:intron | 60.0% |
| CCAAAGCAACTGCCCTCCGA+AGG | + | tig0031256:24440-24459 | None:intergenic | 60.0% | |
| CCTTCGGAGGGCAGTTGCTT+TGG | - | tig0031256:24437-24456 | Msa1446000:intron | 60.0% | |
| ! | AACCCTCAGTGGGCTCCCGA+AGG | - | tig0031256:19762-19781 | Msa1446000:three_prime_UTR | 65.0% |
| CACCTTCGGGAGCCCACTGA+GGG | + | tig0031256:19767-19786 | None:intergenic | 65.0% | |
| CATGGTGGCTCGTGGCTCCA+TGG | - | tig0031256:20873-20892 | Msa1446000:intron | 65.0% | |
| AGTACCGTGCAGCCCTTCGG+AGG | - | tig0031256:24424-24443 | Msa1446000:CDS | 65.0% | |
| GTACCGTGCAGCCCTTCGGA+GGG | - | tig0031256:24425-24444 | Msa1446000:intron | 65.0% | |
| CCACCTTCGGGAGCCCACTG+AGG | + | tig0031256:19768-19787 | None:intergenic | 70.0% | |
| ! | CCTCAGTGGGCTCCCGAAGG+TGG | - | tig0031256:19765-19784 | Msa1446000:three_prime_UTR | 70.0% |
| CTGCCCTCCGAAGGGCTGCA+CGG | + | tig0031256:24431-24450 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031256 | gene | 19570 | 24917 | 19570 | ID=Msa1446000;Name=Msa1446000 |
| tig0031256 | mRNA | 19570 | 24917 | 19570 | ID=Msa1446000-mRNA-1;Parent=Msa1446000;Name=Msa1446000-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0.42|1|0.5|0.42|7|261|399 |
| tig0031256 | exon | 19570 | 20151 | 19570 | ID=Msa1446000-mRNA-1:exon:15264;Parent=Msa1446000-mRNA-1 |
| tig0031256 | exon | 21123 | 21258 | 21123 | ID=Msa1446000-mRNA-1:exon:15263;Parent=Msa1446000-mRNA-1 |
| tig0031256 | exon | 22668 | 22796 | 22668 | ID=Msa1446000-mRNA-1:exon:15262;Parent=Msa1446000-mRNA-1 |
| tig0031256 | exon | 23810 | 23856 | 23810 | ID=Msa1446000-mRNA-1:exon:15261;Parent=Msa1446000-mRNA-1 |
| tig0031256 | exon | 24216 | 24443 | 24216 | ID=Msa1446000-mRNA-1:exon:15260;Parent=Msa1446000-mRNA-1 |
| tig0031256 | exon | 24465 | 24703 | 24465 | ID=Msa1446000-mRNA-1:exon:15259;Parent=Msa1446000-mRNA-1 |
| tig0031256 | exon | 24818 | 24917 | 24818 | ID=Msa1446000-mRNA-1:exon:15258;Parent=Msa1446000-mRNA-1 |
| tig0031256 | CDS | 24818 | 24917 | 24818 | ID=Msa1446000-mRNA-1:cds;Parent=Msa1446000-mRNA-1 |
| tig0031256 | CDS | 24465 | 24703 | 24465 | ID=Msa1446000-mRNA-1:cds;Parent=Msa1446000-mRNA-1 |
| tig0031256 | CDS | 24216 | 24443 | 24216 | ID=Msa1446000-mRNA-1:cds;Parent=Msa1446000-mRNA-1 |
| tig0031256 | CDS | 23810 | 23856 | 23810 | ID=Msa1446000-mRNA-1:cds;Parent=Msa1446000-mRNA-1 |
| tig0031256 | CDS | 22668 | 22796 | 22668 | ID=Msa1446000-mRNA-1:cds;Parent=Msa1446000-mRNA-1 |
| tig0031256 | CDS | 21123 | 21258 | 21123 | ID=Msa1446000-mRNA-1:cds;Parent=Msa1446000-mRNA-1 |
| tig0031256 | CDS | 19831 | 20151 | 19831 | ID=Msa1446000-mRNA-1:cds;Parent=Msa1446000-mRNA-1 |
| tig0031256 | three_prime_UTR | 19570 | 19830 | 19570 | ID=Msa1446000-mRNA-1:three_prime_utr;Parent=Msa1446000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
