AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 120 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAAGAACTTTGTAAATT+TGG 0.086986 tig0029145:-42199 Msa1440940:intergenic
CTGACCGTCGTCGCTATCTT+TGG 0.203363 tig0029145:+42986 Msa1440940:three_prime_UTR
CTCATTTGCTGGAGATTATC+TGG 0.236537 tig0029145:+42612 Msa1440940:three_prime_UTR
GATTGTTGCCATCATTTATC+TGG 0.245576 tig0029145:+43147 Msa1440940:three_prime_UTR
CCTTGGGAACACTAAACTTC+TGG 0.257078 tig0029145:+43472 Msa1440940:three_prime_UTR
GGGGATTACGTTCTCGAAAA+TGG 0.268380 tig0029145:+42790 Msa1440940:three_prime_UTR
ACATTTGTGATACAAGTTAT+AGG 0.274353 tig0029145:+42123 Msa1440940:CDS
CTATGTAGGGGCACAGTATT+AGG 0.283301 tig0029145:+42520 Msa1440940:three_prime_UTR
TTAAAGAACTTTGTAAATTT+GGG 0.285619 tig0029145:-42198 Msa1440940:intergenic
TGATGTTTCAGCACACTCTA+AGG 0.296692 tig0029145:-43339 Msa1440940:intergenic
CAATGGTGTTATCCATCATT+TGG 0.297444 tig0029145:-42903 Msa1440940:intergenic
ATAACACCATTGAAATTGTT+AGG 0.318676 tig0029145:+42914 Msa1440940:three_prime_UTR
CACTAAACTTCTGGGTGGTT+TGG 0.319332 tig0029145:+43481 Msa1440940:three_prime_UTR
TTCATTGAAACTTGCGGATA+AGG 0.325085 tig0029145:-43388 Msa1440940:intergenic
TGCCACGCTTGTTCTCTTGT+CGG 0.342123 tig0029145:-42691 Msa1440940:intergenic
AGGGATTCATGCTCATTTGC+TGG 0.342371 tig0029145:+42601 Msa1440940:three_prime_UTR
TTTGAGCGCCAGAGAGAATA+TGG 0.354225 tig0029145:+42718 Msa1440940:three_prime_UTR
TACCAGGAGCTGTGGTAGTT+GGG 0.361459 tig0029145:+42770 Msa1440940:three_prime_UTR
CTAAATGTCTACTTGGATCT+TGG 0.362438 tig0029145:-42372 Msa1440940:intergenic
GTTTGCATTGTCCTCTATGT+AGG 0.375371 tig0029145:+42506 Msa1440940:three_prime_UTR
TACCAGGTGGTGGTAGGGAG+GGG 0.376072 tig0029145:+42830 Msa1440940:three_prime_UTR
TCTACGAATATTTAATGAAC+TGG 0.389467 tig0029145:+43052 Msa1440940:three_prime_UTR
ATCTTTGGGTGAGAATTTGT+TGG 0.393955 tig0029145:+43001 Msa1440940:three_prime_UTR
GCATGCTCTTCACAGAGAAT+TGG 0.394274 tig0029145:+42013 Msa1440940:CDS
TTCAAACGACGGCGCCTCCT+TGG 0.409832 tig0029145:-43095 Msa1440940:intergenic
TTATAGGCATTCAAATTGTC+TGG 0.411863 tig0029145:+42139 Msa1440940:CDS
TGCTGATTCTGAGAACTTGC+AGG 0.412339 tig0029145:+42423 Msa1440940:three_prime_UTR
TCTTTGGGTGAGAATTTGTT+GGG 0.421801 tig0029145:+43002 Msa1440940:three_prime_UTR
ATAAACACTAACAACTCTTC+CGG 0.422488 tig0029145:+42220 Msa1440940:exon
ACTTTGCAGCTCTCATGATA+AGG 0.425611 tig0029145:+42088 Msa1440940:CDS
CCATTTGAAGAACGAGCTCT+TGG 0.431014 tig0029145:-42940 Msa1440940:intergenic
TGACCGTCGTCGCTATCTTT+GGG 0.431882 tig0029145:+42987 Msa1440940:three_prime_UTR
CCAAGAGCTCGTTCTTCAAA+TGG 0.433577 tig0029145:+42940 Msa1440940:three_prime_UTR
ATTCTGAGAACTTGCAGGAC+AGG 0.434425 tig0029145:+42428 Msa1440940:three_prime_UTR
TCAGACTTATGCATCAACTT+TGG 0.437630 tig0029145:+43314 Msa1440940:three_prime_UTR
TAAATGTCTACTTGGATCTT+GGG 0.439889 tig0029145:-42371 Msa1440940:intergenic
TTTGCATTGTCCTCTATGTA+GGG 0.447980 tig0029145:+42507 Msa1440940:three_prime_UTR
CACCATCTTGTTCCAAATGA+TGG 0.449976 tig0029145:+42891 Msa1440940:three_prime_UTR
GAACATGGTCAAGTTGTATC+TGG 0.452806 tig0029145:+43279 Msa1440940:three_prime_UTR
TCAAACGACGGCGCCTCCTT+GGG 0.458119 tig0029145:-43094 Msa1440940:intergenic
TGGTTCCCTAACAATTTCAA+TGG 0.459007 tig0029145:-42920 Msa1440940:intergenic
CTTTGCAGCTCTCATGATAA+GGG 0.464712 tig0029145:+42089 Msa1440940:CDS
GGAGGCGCCGTCGTTTGAAT+AGG 0.466130 tig0029145:+43099 Msa1440940:three_prime_UTR
ATGATACAATGTGCTTCATA+AGG 0.466722 tig0029145:-43590 Msa1440940:intergenic
ATATGTAACAACATTAGCCT+TGG 0.467558 tig0029145:+43455 Msa1440940:three_prime_UTR
GTTACCAGGTGGTGGTAGGG+AGG 0.472492 tig0029145:+42828 Msa1440940:three_prime_UTR
CTTGGGAACACTAAACTTCT+GGG 0.472502 tig0029145:+43473 Msa1440940:three_prime_UTR
TATGTAACAACATTAGCCTT+GGG 0.481139 tig0029145:+43456 Msa1440940:three_prime_UTR
TAACACCATTGAAATTGTTA+GGG 0.485966 tig0029145:+42915 Msa1440940:three_prime_UTR
CAATATCACCATATTCTCTC+TGG 0.489351 tig0029145:-42726 Msa1440940:intergenic
CTCGAAAATGGAGATGGTAT+TGG 0.491652 tig0029145:+42802 Msa1440940:three_prime_UTR
TTGGAACAAGATGGTGGTAG+TGG 0.494227 tig0029145:-42884 Msa1440940:intergenic
GATGGTATTGGTAGGTTACC+AGG 0.501983 tig0029145:+42814 Msa1440940:three_prime_UTR
GCAGGACAGGGCTGTTCTTG+AGG 0.502162 tig0029145:+42441 Msa1440940:three_prime_UTR
TGTGGATGGTCCATGCAGAT+AGG 0.502449 tig0029145:-42050 Msa1440940:intergenic
AATTCCACAAGGATCGAGAC+AGG 0.502538 tig0029145:+42342 Msa1440940:intron
GTAGGTTACCAGGTGGTGGT+AGG 0.505182 tig0029145:+42824 Msa1440940:three_prime_UTR
ATACCAGGAGCTGTGGTAGT+TGG 0.506423 tig0029145:+42769 Msa1440940:three_prime_UTR
TGGAATTGCGTAGGCATGCT+AGG 0.511583 tig0029145:+42632 Msa1440940:three_prime_UTR
TAGGTTACCAGGTGGTGGTA+GGG 0.512795 tig0029145:+42825 Msa1440940:three_prime_UTR
GCTATTCAGTCTGCCATACC+AGG 0.516031 tig0029145:+42754 Msa1440940:three_prime_UTR
TGTTGGTCTAAATGTCTACT+TGG 0.518204 tig0029145:-42379 Msa1440940:intergenic
CAAACTCGACTTTGAGTCCT+CGG 0.522532 tig0029145:-42488 Msa1440940:intergenic
CTATGTTTCATTGAAACTTG+CGG 0.522671 tig0029145:-43394 Msa1440940:intergenic
GGTGGTAGGGAGGGGAGCAA+TGG 0.523498 tig0029145:+42838 Msa1440940:three_prime_UTR
CTAAAATGCCTTCATCATGT+TGG 0.523887 tig0029145:-42396 Msa1440940:intergenic
ACATCAGAGGGACGAGAAGT+AGG 0.527291 tig0029145:-42664 Msa1440940:intergenic
TATCATGAGAGCTGCAAAGT+AGG 0.528215 tig0029145:-42085 Msa1440940:intergenic
CAATCATGAATGATCTTCGT+TGG 0.532620 tig0029145:-43129 Msa1440940:intergenic
TTCTGAGAACTTGCAGGACA+GGG 0.533978 tig0029145:+42429 Msa1440940:three_prime_UTR
ATTGGTAGGTTACCAGGTGG+TGG 0.534392 tig0029145:+42820 Msa1440940:three_prime_UTR
TTACCAGGTGGTGGTAGGGA+GGG 0.536579 tig0029145:+42829 Msa1440940:three_prime_UTR
GATGTTTCAGCACACTCTAA+GGG 0.536769 tig0029145:-43338 Msa1440940:intergenic
CTCCCCTCCCTACCACCACC+TGG 0.537599 tig0029145:-42832 Msa1440940:intergenic
ATCCATCATTTGGAACAAGA+TGG 0.540246 tig0029145:-42893 Msa1440940:intergenic
AACTACCACAGCTCCTGGTA+TGG 0.541534 tig0029145:-42767 Msa1440940:intergenic
TCCCCAACTACCACAGCTCC+TGG 0.541696 tig0029145:-42772 Msa1440940:intergenic
ACCAGGAGCTGTGGTAGTTG+GGG 0.553461 tig0029145:+42771 Msa1440940:three_prime_UTR
TTAACACGGTGCGAGGAAGA+TGG 0.561222 tig0029145:+41953 Msa1440940:CDS
CACGGTGCGAGGAAGATGGC+TGG 0.561637 tig0029145:+41957 Msa1440940:CDS
CCAGAAGTTTAGTGTTCCCA+AGG 0.561842 tig0029145:-43472 Msa1440940:intergenic
AGGCTGGGAGGTTGTTGAAG+AGG 0.565561 tig0029145:+42540 Msa1440940:three_prime_UTR
CATTTAGACCAACATGATGA+AGG 0.566826 tig0029145:+42388 Msa1440940:three_prime_UTR
GAGCTCGTTCTTCAAATGGA+TGG 0.567465 tig0029145:+42944 Msa1440940:three_prime_UTR
AGTAGGAGAACAGCATTATG+TGG 0.571923 tig0029145:-42068 Msa1440940:intergenic
AGGGAGGGGAGCAATGGCAA+TGG 0.578428 tig0029145:+42844 Msa1440940:three_prime_UTR
GTCTGCCATACCAGGAGCTG+TGG 0.587043 tig0029145:+42762 Msa1440940:three_prime_UTR
TTGCATTGTCCTCTATGTAG+GGG 0.587725 tig0029145:+42508 Msa1440940:three_prime_UTR
ATAAGAAGAGAAGTTGCTCA+AGG 0.588030 tig0029145:+42581 Msa1440940:three_prime_UTR
GGAGAACAGCATTATGTGGA+TGG 0.588463 tig0029145:-42064 Msa1440940:intergenic
TACGTTCTCGAAAATGGAGA+TGG 0.597289 tig0029145:+42796 Msa1440940:three_prime_UTR
TGGTTTGGCAGACTGTTGCA+TGG 0.598977 tig0029145:+43496 Msa1440940:three_prime_UTR
AATACTGTGCCCCTACATAG+AGG 0.600766 tig0029145:-42517 Msa1440940:intergenic
GAGATTATCTGGAATTGCGT+AGG 0.608619 tig0029145:+42623 Msa1440940:three_prime_UTR
ATGGCAATGGTAATGTACCT+TGG 0.614535 tig0029145:+42857 Msa1440940:three_prime_UTR
AGTTTCATGTCCTATCTGCA+TGG 0.615030 tig0029145:+42040 Msa1440940:CDS
TAAGAAGAGAAGTTGCTCAA+GGG 0.617758 tig0029145:+42582 Msa1440940:three_prime_UTR
TTGAGCAAGCATGCTGAACA+TGG 0.618788 tig0029145:+43264 Msa1440940:three_prime_UTR
AAAATTGAGAGACAACTCTA+CGG 0.629636 tig0029145:+42171 Msa1440940:CDS
TGAGTAGTTAACACGGTGCG+AGG 0.630126 tig0029145:+41946 Msa1440940:intron
GTTCTTCAAATGGATGGTCA+AGG 0.631888 tig0029145:+42950 Msa1440940:three_prime_UTR
TAGGGGCACAGTATTAGGCT+GGG 0.632550 tig0029145:+42525 Msa1440940:three_prime_UTR
AAAATGGAGATGGTATTGGT+AGG 0.633136 tig0029145:+42806 Msa1440940:three_prime_UTR
GGACAGGGCTGTTCTTGAGG+AGG 0.634510 tig0029145:+42444 Msa1440940:three_prime_UTR
AAGATGCATCTCATGTCCCA+AGG 0.639920 tig0029145:+43078 Msa1440940:three_prime_UTR
TCTTGTCGGATCAACATCAG+AGG 0.652568 tig0029145:-42677 Msa1440940:intergenic
CATCATTTGGAACAAGATGG+TGG 0.659005 tig0029145:-42890 Msa1440940:intergenic
ACCTCGTCCTATTCAAACGA+CGG 0.662069 tig0029145:-43106 Msa1440940:intergenic
ATTCCACAAGGATCGAGACA+GGG 0.664648 tig0029145:+42343 Msa1440940:intron
CTTGTCGGATCAACATCAGA+GGG 0.668547 tig0029145:-42676 Msa1440940:intergenic
ATCCGACAAGAGAACAAGCG+TGG 0.676885 tig0029145:+42689 Msa1440940:three_prime_UTR
AGATGTAGATAATTCATCCG+AGG 0.680649 tig0029145:+42471 Msa1440940:three_prime_UTR
GGGAACACTAAACTTCTGGG+TGG 0.687687 tig0029145:+43476 Msa1440940:three_prime_UTR
GCCGTCGTTTGAATAGGACG+AGG 0.693738 tig0029145:+43105 Msa1440940:three_prime_UTR
TCACCCAAAGATAGCGACGA+CGG 0.702856 tig0029145:-42990 Msa1440940:intergenic
ATGCATCTCATGTCCCAAGG+AGG 0.718218 tig0029145:+43081 Msa1440940:three_prime_UTR
GGGCACAGTATTAGGCTGGG+AGG 0.723334 tig0029145:+42528 Msa1440940:three_prime_UTR
ATGGTGGTAGTGGTTAACCA+AGG 0.736997 tig0029145:-42874 Msa1440940:intergenic
AATATGTTGAGTAGTTAACA+CGG 0.748234 tig0029145:+41939 Msa1440940:intron
GGTATTGGTAGGTTACCAGG+TGG 0.762448 tig0029145:+42817 Msa1440940:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTTATTTATTATATATA+TGG - tig0029145:39004-39023 Msa0156160:intergenic 0.0%
!!! TTAATATACTATATTTTATC+AGG - tig0029145:40844-40863 Msa1440940:intergenic 10.0%
!! ACAAATCTTAATTTATTATT+AGG - tig0029145:40956-40975 Msa1440940:intergenic 10.0%
!! TAATAATAAATTAAGATTTG+TGG + tig0029145:40955-40974 Msa1440940:intron 10.0%
!! ATTATATATATGGTAGAAAA+TGG - tig0029145:38994-39013 Msa0156160:intergenic 15.0%
!!! AAAAAAATCATAACTTTTCT+TGG - tig0029145:39274-39293 Msa1440940:intergenic 15.0%
!!! TCATTATTTATAAAGTACTT+TGG + tig0029145:40275-40294 Msa1440940:intron 15.0%
!! TATCTGTAATGTTATATTTA+CGG + tig0029145:40565-40584 Msa1440940:intron 15.0%
!! AAAAGACTAACAAAAATATT+AGG - tig0029145:41210-41229 Msa1440940:intergenic 15.0%
!!! TTTTTGTTTAATCATGTTAT+AGG + tig0029145:41551-41570 Msa1440940:intron 15.0%
!!! TTTTGTTTAATCATGTTATA+GGG + tig0029145:41552-41571 Msa1440940:intron 15.0%
!!! AATTATATTTAGAGTAAAAC+AGG + tig0029145:41713-41732 Msa1440940:intron 15.0%
!!! ATTATATTTAGAGTAAAACA+GGG + tig0029145:41714-41733 Msa1440940:intron 15.0%
!! TTAAAGAACTTTGTAAATTT+GGG - tig0029145:42201-42220 Msa1440940:intergenic 15.0%
!! ATTAAAGAACTTTGTAAATT+TGG - tig0029145:42202-42221 Msa1440940:intergenic 15.0%
!!! ATAGAGTATTAATTTCATTT+TGG - tig0029145:42312-42331 Msa1440940:intergenic 15.0%
!! TAAAAAAAATATTCAGTTGA+AGG - tig0029145:43625-43644 Msa1440940:intergenic 15.0%
!!! ATATTTTTTTTATGCTTATG+AGG + tig0029145:43633-43652 Msa1440940:three_prime_UTR 15.0%
!!! AAATTATAAACCGTTCATTT+TGG + tig0029145:39018-39037 Msa1440940:intron 20.0%
!! TAAATTAAAATCAGAACTGA+AGG - tig0029145:39169-39188 Msa1440940:intergenic 20.0%
!!! TATTATGCAATTTGTTTTTC+TGG + tig0029145:39191-39210 Msa1440940:intron 20.0%
!!! TTGTTTTTCTGGATTTTAAT+TGG + tig0029145:39202-39221 Msa1440940:intron 20.0%
!!! TGTTTTTCTGGATTTTAATT+GGG + tig0029145:39203-39222 Msa1440940:intron 20.0%
!!! TTTGATCTTGATTTTTCAAT+TGG + tig0029145:39227-39246 Msa1440940:intron 20.0%
!!! TTGATCTTGATTTTTCAATT+GGG + tig0029145:39228-39247 Msa1440940:intron 20.0%
!!! TAACTTTTCTTGGAAAAATT+AGG - tig0029145:39264-39283 Msa1440940:intergenic 20.0%
!!! TTTTGAAATTGAATCTGATT+TGG + tig0029145:39426-39445 Msa1440940:intron 20.0%
!!! TTTGAAATTGAATCTGATTT+GGG + tig0029145:39427-39446 Msa1440940:intron 20.0%
!!! TTCTAAGTTTTGTGATTAAT+TGG + tig0029145:39479-39498 Msa1440940:intron 20.0%
!! ATATTCCACAATTGAAAAAT+TGG + tig0029145:39529-39548 Msa1440940:intron 20.0%
!!! TTTAACCAATTTTTCAATTG+TGG - tig0029145:39537-39556 Msa1440940:intergenic 20.0%
!!! TTTTTGACTAAAACAGTATT+AGG - tig0029145:40015-40034 Msa1440940:intergenic 20.0%
!! AAAAAACAATGTTGAGTTTA+TGG + tig0029145:40030-40049 Msa1440940:intron 20.0%
!! ATAATAGAAAGACAGAATTA+AGG - tig0029145:40075-40094 Msa1440940:intergenic 20.0%
!! AATCAACTTCCTATTAAAAA+GGG - tig0029145:40746-40765 Msa1440940:intergenic 20.0%
!! AAATCAACTTCCTATTAAAA+AGG - tig0029145:40747-40766 Msa1440940:intergenic 20.0%
!!! ATTATAAATCTTCGTTTTAG+AGG + tig0029145:40811-40830 Msa1440940:intron 20.0%
!! ACATTGAAAGTTTAAACATT+TGG + tig0029145:40888-40907 Msa1440940:intron 20.0%
!! CATTGAAAGTTTAAACATTT+GGG + tig0029145:40889-40908 Msa1440940:intron 20.0%
!!! GATTAGTTTAAAAAATCTGT+TGG + tig0029145:41038-41057 Msa1440940:intron 20.0%
!! TTATAAATGAATAGATCTTG+CGG + tig0029145:41379-41398 Msa1440940:intron 20.0%
!! TCCAATTAAAAGGAAATTAA+AGG - tig0029145:41670-41689 Msa1440940:intergenic 20.0%
!!! TTAATTTCCTTTTAATTGGA+AGG + tig0029145:41670-41689 Msa1440940:intron 20.0%
!!! TAATTTCCTTTTAATTGGAA+GGG + tig0029145:41671-41690 Msa1440940:intron 20.0%
!!! CATGTTTTTTGTTTTTATGT+CGG + tig0029145:41859-41878 Msa1440940:intron 20.0%
!!! TTGTCTCTCAATTTTTAAAT+CGG - tig0029145:42166-42185 Msa1440940:intergenic 20.0%
!! GTTAATATCAAAACTATTAC+CGG - tig0029145:42242-42261 Msa1440940:intergenic 20.0%
!!! AATTCATACTTGAGTTTTTT+CGG + tig0029145:43173-43192 Msa1440940:intron 20.0%
! CAATGAAATTCCAAAATGAA+CGG - tig0029145:39031-39050 Msa1440940:intergenic 25.0%
!!! TGATTTTTTTCTTCTGATGA+TGG + tig0029145:39284-39303 Msa1440940:intron 25.0%
!!! TTTAGGGTTTGATTTTGAAT+TGG + tig0029145:39338-39357 Msa1440940:intron 25.0%
!!! TTAGGGTTTGATTTTGAATT+GGG + tig0029145:39339-39358 Msa1440940:intron 25.0%
! TGAAGTTTCTGTGATTTAAT+TGG + tig0029145:39401-39420 Msa1440940:intron 25.0%
! TTTCATTTCTTGATTCTGAT+TGG + tig0029145:39456-39475 Msa1440940:intron 25.0%
!!! TAATTGGTGATGAATAAGAT+AGG + tig0029145:39495-39514 Msa1440940:intron 25.0%
!!! AATTGGTGATGAATAAGATA+GGG + tig0029145:39496-39515 Msa1440940:intron 25.0%
!!! ATTTCTAGCCTAAATTTTAG+GGG - tig0029145:39652-39671 Msa1440940:intergenic 25.0%
!!! GATTTCTAGCCTAAATTTTA+GGG - tig0029145:39653-39672 Msa1440940:intergenic 25.0%
!!! AGATTTCTAGCCTAAATTTT+AGG - tig0029145:39654-39673 Msa1440940:intergenic 25.0%
! AAATTATTGATCCTTTGTGA+TGG + tig0029145:39685-39704 Msa1440940:intron 25.0%
!!! TTTGGTTTGTATTTTCTCAT+AGG + tig0029145:39935-39954 Msa1440940:intron 25.0%
!!! CATAGTTTTTTCTTCCTTTT+TGG + tig0029145:40159-40178 Msa1440940:intron 25.0%
!! ATAGCTAGAGATTATTGTTT+TGG + tig0029145:40382-40401 Msa1440940:intron 25.0%
! AAATAGTAGCAAGGAAATAA+AGG - tig0029145:40451-40470 Msa1440940:intergenic 25.0%
! CAATGATACTATTCTAGTAT+AGG + tig0029145:41013-41032 Msa1440940:intron 25.0%
! ATATCACAACTTAAGTTCAA+TGG - tig0029145:41066-41085 Msa1440940:intergenic 25.0%
! AGACATATATAACATCATCT+TGG - tig0029145:41118-41137 Msa1440940:intergenic 25.0%
! TTACAAGAACATCAATATAG+AGG - tig0029145:41291-41310 Msa1440940:intergenic 25.0%
! TATTGATGTTCTTGTAATCA+AGG + tig0029145:41294-41313 Msa1440940:intron 25.0%
! GATTATCATGTAGTATACAT+TGG + tig0029145:41435-41454 Msa1440940:intron 25.0%
!!! GCCTTTAATTTCCTTTTAAT+TGG + tig0029145:41666-41685 Msa1440940:intron 25.0%
! ATATGTCTAAGAAAAAGCAA+AGG - tig0029145:41807-41826 Msa1440940:intergenic 25.0%
! CGACATAAAAACAAAAAACA+TGG - tig0029145:41861-41880 Msa1440940:intergenic 25.0%
! AATATGTTGAGTAGTTAACA+CGG + tig0029145:41939-41958 Msa1440940:intron 25.0%
! ACATTTGTGATACAAGTTAT+AGG + tig0029145:42123-42142 Msa1440940:CDS 25.0%
! ATTAATACTCTATTGTCTGT+TGG + tig0029145:42319-42338 Msa1440940:intron 25.0%
! ATAACACCATTGAAATTGTT+AGG + tig0029145:42914-42933 Msa1440940:three_prime_UTR 25.0%
! TAACACCATTGAAATTGTTA+GGG + tig0029145:42915-42934 Msa1440940:three_prime_UTR 25.0%
! TCTACGAATATTTAATGAAC+TGG + tig0029145:43052-43071 Msa1440940:three_prime_UTR 25.0%
!! GAATTTTACCAGATAAATGA+TGG - tig0029145:43158-43177 Msa1440940:intergenic 25.0%
! TTCTATTGAAGAAACTAAGT+GGG - tig0029145:43240-43259 Msa1440940:intergenic 25.0%
! ATTCTATTGAAGAAACTAAG+TGG - tig0029145:43241-43260 Msa1440940:intergenic 25.0%
! TTGTTTCTTCTCTACATCTT+TGG + tig0029145:39048-39067 Msa1440940:intron 30.0%
TGTTTCTTCTCTACATCTTT+GGG + tig0029145:39049-39068 Msa1440940:intron 30.0%
TAAAATCAGAACTGAAGGAA+GGG - tig0029145:39164-39183 Msa1440940:intergenic 30.0%
TTAAAATCAGAACTGAAGGA+AGG - tig0029145:39165-39184 Msa1440940:intergenic 30.0%
!!! TCTGATGATGGATTTTGTAT+AGG + tig0029145:39296-39315 Msa1440940:intron 30.0%
!!! CTGATGATGGATTTTGTATA+GGG + tig0029145:39297-39316 Msa1440940:intron 30.0%
! TTGGTTTGAGAGTTCAATTT+AGG + tig0029145:39321-39340 Msa1440940:intron 30.0%
TGGTTTGAGAGTTCAATTTA+GGG + tig0029145:39322-39341 Msa1440940:intron 30.0%
!! TAGGGTTTGATTTTGAATTG+GGG + tig0029145:39340-39359 Msa1440940:intron 30.0%
TGAATAAGATAGGGTGTAAT+TGG + tig0029145:39505-39524 Msa1440940:intron 30.0%
ACAAAAATGTAGGGTTATCA+GGG - tig0029145:39737-39756 Msa1440940:intergenic 30.0%
ATAACTGCCACAAAAATGTA+GGG - tig0029145:39746-39765 Msa1440940:intergenic 30.0%
ATTCGTAAATTTGAAAGTCC+AGG - tig0029145:39792-39811 Msa1440940:intergenic 30.0%
CAACTATCAAAAGATGTCAT+GGG - tig0029145:39854-39873 Msa1440940:intergenic 30.0%
ACAACTATCAAAAGATGTCA+TGG - tig0029145:39855-39874 Msa1440940:intergenic 30.0%
!! TCTTGTTGTTAGTATCAGTT+TGG + tig0029145:39917-39936 Msa1440940:intron 30.0%
!!! AGTTTTTTCTTCCTTTTTGG+TGG + tig0029145:40162-40181 Msa1440940:intron 30.0%
AACTTCACAAAAGAATCACA+GGG - tig0029145:40320-40339 Msa1440940:intergenic 30.0%
TAACTTCACAAAAGAATCAC+AGG - tig0029145:40321-40340 Msa1440940:intergenic 30.0%
GAGTAATTCAAACCAAGATT+AGG - tig0029145:40493-40512 Msa1440940:intergenic 30.0%
AATGTTATATTTACGGTCAG+AGG + tig0029145:40572-40591 Msa1440940:intron 30.0%
ATGTTATATTTACGGTCAGA+GGG + tig0029145:40573-40592 Msa1440940:intron 30.0%
AAAGAAGACTTTCTAACACA+TGG - tig0029145:40773-40792 Msa1440940:intergenic 30.0%
ATGATATCCTAGTCATATAC+TGG + tig0029145:41084-41103 Msa1440940:intron 30.0%
TTCAAAACCAGTATATGACT+AGG - tig0029145:41094-41113 Msa1440940:intergenic 30.0%
!!! AGGAAGTGATTTTTTTTGTG+AGG + tig0029145:41314-41333 Msa1440940:intron 30.0%
!!! GGAAGTGATTTTTTTTGTGA+GGG + tig0029145:41315-41334 Msa1440940:intron 30.0%
TACATGATAATCCTGATCAA+GGG - tig0029145:41427-41446 Msa1440940:intergenic 30.0%
ATCATCACAAATATAGACCA+TGG - tig0029145:41473-41492 Msa1440940:intergenic 30.0%
ATCATGTTATAGGGTAAGAA+TGG + tig0029145:41561-41580 Msa1440940:intron 30.0%
TTATAGGCATTCAAATTGTC+TGG + tig0029145:42139-42158 Msa1440940:CDS 30.0%
AAAATTGAGAGACAACTCTA+CGG + tig0029145:42171-42190 Msa1440940:CDS 30.0%
ATAAACACTAACAACTCTTC+CGG + tig0029145:42220-42239 Msa1440940:exon 30.0%
TAAATGTCTACTTGGATCTT+GGG - tig0029145:42374-42393 Msa1440940:intergenic 30.0%
TCTATTGAAGAAACTAAGTG+GGG - tig0029145:43239-43258 Msa1440940:intergenic 30.0%
CTATGTTTCATTGAAACTTG+CGG - tig0029145:43397-43416 Msa1440940:intergenic 30.0%
! ATATGTAACAACATTAGCCT+TGG + tig0029145:43455-43474 Msa1440940:three_prime_UTR 30.0%
!! TATGTAACAACATTAGCCTT+GGG + tig0029145:43456-43475 Msa1440940:three_prime_UTR 30.0%
ATGATACAATGTGCTTCATA+AGG - tig0029145:43593-43612 Msa1440940:intergenic 30.0%
TTTGCCTTTGTTCTTTCTTC+TGG - tig0029145:39100-39119 Msa1440940:intergenic 35.0%
TGAAGGAAGGGATTTACAAA+GGG - tig0029145:39152-39171 Msa1440940:intergenic 35.0%
!! GATGGATTTTGTATAGGGTT+TGG + tig0029145:39302-39321 Msa1440940:intron 35.0%
! TTTTGAATTGGGGTTGTGAT+TGG + tig0029145:39350-39369 Msa1440940:intron 35.0%
TTGGATGTTGATCTTGTGAT+TGG + tig0029145:39369-39388 Msa1440940:intron 35.0%
AATCACAGAAACTTCATGCA+TGG - tig0029145:39397-39416 Msa1440940:intergenic 35.0%
AAAACCCACAGAACAAATTG+GGG - tig0029145:39606-39625 Msa1440940:intergenic 35.0%
GAAAACCCACAGAACAAATT+GGG - tig0029145:39607-39626 Msa1440940:intergenic 35.0%
TGAAAACCCACAGAACAAAT+TGG - tig0029145:39608-39627 Msa1440940:intergenic 35.0%
!!! GGGTTTTCAGAACTAGTTTT+CGG + tig0029145:39619-39638 Msa1440940:intron 35.0%
!!! GGTTTTCAGAACTAGTTTTC+GGG + tig0029145:39620-39639 Msa1440940:intron 35.0%
!!! GTTTTCAGAACTAGTTTTCG+GGG + tig0029145:39621-39640 Msa1440940:intron 35.0%
CACAAAAATGTAGGGTTATC+AGG - tig0029145:39738-39757 Msa1440940:intergenic 35.0%
! CTGATAACCCTACATTTTTG+TGG + tig0029145:39736-39755 Msa1440940:intron 35.0%
GATAACTGCCACAAAAATGT+AGG - tig0029145:39747-39766 Msa1440940:intergenic 35.0%
TATCAAAAGATGTCATGGGT+TGG - tig0029145:39850-39869 Msa1440940:intergenic 35.0%
AATTACATGTCCAAGATTGC+AGG + tig0029145:40242-40261 Msa1440940:intron 35.0%
ATTACATGTCCAAGATTGCA+GGG + tig0029145:40243-40262 Msa1440940:intron 35.0%
GCAAAAGTGAAATAGTAGCA+AGG - tig0029145:40460-40479 Msa1440940:intergenic 35.0%
AAATCCAAGAAACAACCTCT+TGG + tig0029145:40651-40670 Msa1440940:intron 35.0%
! ATTGGACCACCCTTTTTAAT+AGG + tig0029145:40734-40753 Msa1440940:intron 35.0%
CAACTTCCTATTAAAAAGGG+TGG - tig0029145:40743-40762 Msa1440940:intergenic 35.0%
! GTGTCTCATATTCGTCTTTT+TGG + tig0029145:40911-40930 Msa1440940:intron 35.0%
CAATATAGAGGACGACTAAA+AGG - tig0029145:41279-41298 Msa1440940:intergenic 35.0%
ACACATTAAATCCCTTGATC+AGG + tig0029145:41413-41432 Msa1440940:intron 35.0%
CTACATGATAATCCTGATCA+AGG - tig0029145:41428-41447 Msa1440940:intergenic 35.0%
AGTATACATTGGAGATCACT+AGG + tig0029145:41446-41465 Msa1440940:intron 35.0%
TATAGGGTAAGAATGGTTTG+TGG + tig0029145:41568-41587 Msa1440940:intron 35.0%
TCTTCTCTGTTTATGGAGAA+AGG + tig0029145:41593-41612 Msa1440940:intron 35.0%
CTTCTCTGTTTATGGAGAAA+GGG + tig0029145:41594-41613 Msa1440940:intron 35.0%
GTCTAAGAAAAAGCAAAGGA+AGG - tig0029145:41803-41822 Msa1440940:intergenic 35.0%
CTAAATGTCTACTTGGATCT+TGG - tig0029145:42375-42394 Msa1440940:intergenic 35.0%
! TGTTGGTCTAAATGTCTACT+TGG - tig0029145:42382-42401 Msa1440940:intergenic 35.0%
CATTTAGACCAACATGATGA+AGG + tig0029145:42388-42407 Msa1440940:three_prime_UTR 35.0%
CTAAAATGCCTTCATCATGT+TGG - tig0029145:42399-42418 Msa1440940:intergenic 35.0%
AGATGTAGATAATTCATCCG+AGG + tig0029145:42471-42490 Msa1440940:three_prime_UTR 35.0%
TTTGCATTGTCCTCTATGTA+GGG + tig0029145:42507-42526 Msa1440940:three_prime_UTR 35.0%
ATAAGAAGAGAAGTTGCTCA+AGG + tig0029145:42581-42600 Msa1440940:three_prime_UTR 35.0%
TAAGAAGAGAAGTTGCTCAA+GGG + tig0029145:42582-42601 Msa1440940:three_prime_UTR 35.0%
CAATATCACCATATTCTCTC+TGG - tig0029145:42729-42748 Msa1440940:intergenic 35.0%
!! AAAATGGAGATGGTATTGGT+AGG + tig0029145:42806-42825 Msa1440940:three_prime_UTR 35.0%
! ATCCATCATTTGGAACAAGA+TGG - tig0029145:42896-42915 Msa1440940:intergenic 35.0%
!! CAATGGTGTTATCCATCATT+TGG - tig0029145:42906-42925 Msa1440940:intergenic 35.0%
TGGTTCCCTAACAATTTCAA+TGG - tig0029145:42923-42942 Msa1440940:intergenic 35.0%
ATCTTTGGGTGAGAATTTGT+TGG + tig0029145:43001-43020 Msa1440940:three_prime_UTR 35.0%
! TCTTTGGGTGAGAATTTGTT+GGG + tig0029145:43002-43021 Msa1440940:three_prime_UTR 35.0%
CAATCATGAATGATCTTCGT+TGG - tig0029145:43132-43151 Msa1440940:intergenic 35.0%
GATTGTTGCCATCATTTATC+TGG + tig0029145:43147-43166 Msa1440940:three_prime_UTR 35.0%
TCAGACTTATGCATCAACTT+TGG + tig0029145:43314-43333 Msa1440940:three_prime_UTR 35.0%
TTCATTGAAACTTGCGGATA+AGG - tig0029145:43391-43410 Msa1440940:intergenic 35.0%
! TGTTCTTTCTTCTGGTTGGT+TGG - tig0029145:39092-39111 Msa1440940:intergenic 40.0%
CCTTTGTTCTTTCTTCTGGT+TGG - tig0029145:39096-39115 Msa1440940:intergenic 40.0%
CCAACCAGAAGAAAGAACAA+AGG + tig0029145:39093-39112 Msa1440940:intron 40.0%
GAAGGAAGGGATTTACAAAG+GGG - tig0029145:39151-39170 Msa1440940:intergenic 40.0%
CTGAAGGAAGGGATTTACAA+AGG - tig0029145:39153-39172 Msa1440940:intergenic 40.0%
! TTACCCCCAATTTGTTCTGT+GGG + tig0029145:39599-39618 Msa1440940:intron 40.0%
AAACCCACAGAACAAATTGG+GGG - tig0029145:39605-39624 Msa1440940:intergenic 40.0%
! GGGCTTTTCCCCTAAAATTT+AGG + tig0029145:39641-39660 Msa1440940:intron 40.0%
! TTGATCCTTTGTGATGGTGT+TGG + tig0029145:39691-39710 Msa1440940:intron 40.0%
AAATGTAGGGTTATCAGGGT+AGG - tig0029145:39733-39752 Msa1440940:intergenic 40.0%
TAAATTTGAAAGTCCAGGCG+AGG - tig0029145:39787-39806 Msa1440940:intergenic 40.0%
GGGAAAAGAGGAATCAATCA+GGG - tig0029145:39818-39837 Msa1440940:intergenic 40.0%
AGGGAAAAGAGGAATCAATC+AGG - tig0029145:39819-39838 Msa1440940:intergenic 40.0%
TGGTTTACAACAGGGAAAAG+AGG - tig0029145:39830-39849 Msa1440940:intergenic 40.0%
!! TCATGGGTTGGTTTACAACA+GGG - tig0029145:39838-39857 Msa1440940:intergenic 40.0%
!! ACTTTGGAGCATTGCATAAG+TGG + tig0029145:40291-40310 Msa1440940:intron 40.0%
ACATTCAGAATCCTCTGGTA+GGG + tig0029145:40356-40375 Msa1440940:intron 40.0%
GCAAGGAAATAAAGGACACA+AGG - tig0029145:40443-40462 Msa1440940:intergenic 40.0%
GTTTCTTGGATTTGAACCTG+TGG - tig0029145:40644-40663 Msa1440940:intergenic 40.0%
!! TAAGCCAAGAGGTTGTTTCT+TGG - tig0029145:40658-40677 Msa1440940:intergenic 40.0%
TCATTGTCATGCCTTCTGAA+TGG + tig0029145:40978-40997 Msa1440940:intron 40.0%
TTGTCAGTGAACCATTCAGA+AGG - tig0029145:40992-41011 Msa1440940:intergenic 40.0%
TGTGGTGTCTTCTCTGTTTA+TGG + tig0029145:41586-41605 Msa1440940:intron 40.0%
TTATTATCCACGATCGAGTC+TGG + tig0029145:41622-41641 Msa1440940:intron 40.0%
CTTCTGCCCTTCCAATTAAA+AGG - tig0029145:41680-41699 Msa1440940:intergenic 40.0%
TTAATTGGAAGGGCAGAAGA+AGG + tig0029145:41681-41700 Msa1440940:intron 40.0%
TAATTGGAAGGGCAGAAGAA+GGG + tig0029145:41682-41701 Msa1440940:intron 40.0%
GAGTAAAACAGGGAAAATCG+AGG + tig0029145:41724-41743 Msa1440940:intron 40.0%
AAAACAGGGAAAATCGAGGA+AGG + tig0029145:41728-41747 Msa1440940:intron 40.0%
AGTTTCATGTCCTATCTGCA+TGG + tig0029145:42040-42059 Msa1440940:CDS 40.0%
AGTAGGAGAACAGCATTATG+TGG - tig0029145:42071-42090 Msa1440940:intergenic 40.0%
TATCATGAGAGCTGCAAAGT+AGG - tig0029145:42088-42107 Msa1440940:intergenic 40.0%
ACTTTGCAGCTCTCATGATA+AGG + tig0029145:42088-42107 Msa1440940:CDS 40.0%
CTTTGCAGCTCTCATGATAA+GGG + tig0029145:42089-42108 Msa1440940:CDS 40.0%
TTGTCTGTTGGAATTCCACA+AGG + tig0029145:42331-42350 Msa1440940:intron 40.0%
GTTTGCATTGTCCTCTATGT+AGG + tig0029145:42506-42525 Msa1440940:three_prime_UTR 40.0%
TTGCATTGTCCTCTATGTAG+GGG + tig0029145:42508-42527 Msa1440940:three_prime_UTR 40.0%
! CTCATTTGCTGGAGATTATC+TGG + tig0029145:42612-42631 Msa1440940:three_prime_UTR 40.0%
! GAGATTATCTGGAATTGCGT+AGG + tig0029145:42623-42642 Msa1440940:three_prime_UTR 40.0%
TACGTTCTCGAAAATGGAGA+TGG + tig0029145:42796-42815 Msa1440940:three_prime_UTR 40.0%
CTCGAAAATGGAGATGGTAT+TGG + tig0029145:42802-42821 Msa1440940:three_prime_UTR 40.0%
! ATGGCAATGGTAATGTACCT+TGG + tig0029145:42857-42876 Msa1440940:three_prime_UTR 40.0%
! CATCATTTGGAACAAGATGG+TGG - tig0029145:42893-42912 Msa1440940:intergenic 40.0%
CACCATCTTGTTCCAAATGA+TGG + tig0029145:42891-42910 Msa1440940:three_prime_UTR 40.0%
GTTCTTCAAATGGATGGTCA+AGG + tig0029145:42950-42969 Msa1440940:three_prime_UTR 40.0%
! GAACATGGTCAAGTTGTATC+TGG + tig0029145:43279-43298 Msa1440940:three_prime_UTR 40.0%
GATGTTTCAGCACACTCTAA+GGG - tig0029145:43341-43360 Msa1440940:intergenic 40.0%
TGATGTTTCAGCACACTCTA+AGG - tig0029145:43342-43361 Msa1440940:intergenic 40.0%
CTTGGGAACACTAAACTTCT+GGG + tig0029145:43473-43492 Msa1440940:three_prime_UTR 40.0%
! CTTTCTTCTGGTTGGTTGGT+TGG - tig0029145:39088-39107 Msa1440940:intergenic 45.0%
! GTTACCCCCAATTTGTTCTG+TGG + tig0029145:39598-39617 Msa1440940:intron 45.0%
GGCTAGAAATCTTCGATGTG+CGG + tig0029145:39662-39681 Msa1440940:intron 45.0%
!! GTCATGGGTTGGTTTACAAC+AGG - tig0029145:39839-39858 Msa1440940:intergenic 45.0%
CTGCAGGTATACCACCAAAA+AGG - tig0029145:40176-40195 Msa1440940:intergenic 45.0%
CAACAAGTCACAAAGTCTGC+AGG - tig0029145:40192-40211 Msa1440940:intergenic 45.0%
! CTGCAGACTTTGTGACTTGT+TGG + tig0029145:40190-40209 Msa1440940:intron 45.0%
ATCGATGTACCCTGCAATCT+TGG - tig0029145:40255-40274 Msa1440940:intergenic 45.0%
CAGAGGATTCTGAATGTCAG+AGG - tig0029145:40353-40372 Msa1440940:intergenic 45.0%
CTCTGACATTCAGAATCCTC+TGG + tig0029145:40351-40370 Msa1440940:intron 45.0%
GACATTCAGAATCCTCTGGT+AGG + tig0029145:40355-40374 Msa1440940:intron 45.0%
CTAGCTATATTCCCTACCAG+AGG - tig0029145:40370-40389 Msa1440940:intergenic 45.0%
GCATTGCAAGCACCTAATCT+TGG + tig0029145:40478-40497 Msa1440940:intron 45.0%
GTCAGATCTTGTAAGCCAAG+AGG - tig0029145:40669-40688 Msa1440940:intergenic 45.0%
AAAGGGTGGTCCAATTCATG+AGG - tig0029145:40729-40748 Msa1440940:intergenic 45.0%
AAGAATGAGCATCTGAGGAG+AGG + tig0029145:41338-41357 Msa1440940:intron 45.0%
ATTGGAGATCACTAGGACCA+TGG + tig0029145:41453-41472 Msa1440940:intron 45.0%
GCATGCTCTTCACAGAGAAT+TGG + tig0029145:42013-42032 Msa1440940:CDS 45.0%
GGAGAACAGCATTATGTGGA+TGG - tig0029145:42067-42086 Msa1440940:intergenic 45.0%
AATTCCACAAGGATCGAGAC+AGG + tig0029145:42342-42361 Msa1440940:intron 45.0%
ATTCCACAAGGATCGAGACA+GGG + tig0029145:42343-42362 Msa1440940:intron 45.0%
!! TGCTGATTCTGAGAACTTGC+AGG + tig0029145:42423-42442 Msa1440940:three_prime_UTR 45.0%
! ATTCTGAGAACTTGCAGGAC+AGG + tig0029145:42428-42447 Msa1440940:three_prime_UTR 45.0%
! TTCTGAGAACTTGCAGGACA+GGG + tig0029145:42429-42448 Msa1440940:three_prime_UTR 45.0%
CAAACTCGACTTTGAGTCCT+CGG - tig0029145:42491-42510 Msa1440940:intergenic 45.0%
AATACTGTGCCCCTACATAG+AGG - tig0029145:42520-42539 Msa1440940:intergenic 45.0%
! CTATGTAGGGGCACAGTATT+AGG + tig0029145:42520-42539 Msa1440940:three_prime_UTR 45.0%
AGGGATTCATGCTCATTTGC+TGG + tig0029145:42601-42620 Msa1440940:three_prime_UTR 45.0%
CTTGTCGGATCAACATCAGA+GGG - tig0029145:42679-42698 Msa1440940:intergenic 45.0%
TCTTGTCGGATCAACATCAG+AGG - tig0029145:42680-42699 Msa1440940:intergenic 45.0%
TTTGAGCGCCAGAGAGAATA+TGG + tig0029145:42718-42737 Msa1440940:three_prime_UTR 45.0%
GGGGATTACGTTCTCGAAAA+TGG + tig0029145:42790-42809 Msa1440940:three_prime_UTR 45.0%
!! GATGGTATTGGTAGGTTACC+AGG + tig0029145:42814-42833 Msa1440940:three_prime_UTR 45.0%
!! ATGGTGGTAGTGGTTAACCA+AGG - tig0029145:42877-42896 Msa1440940:intergenic 45.0%
! TTGGAACAAGATGGTGGTAG+TGG - tig0029145:42887-42906 Msa1440940:intergenic 45.0%
CCATTTGAAGAACGAGCTCT+TGG - tig0029145:42943-42962 Msa1440940:intergenic 45.0%
CCAAGAGCTCGTTCTTCAAA+TGG + tig0029145:42940-42959 Msa1440940:three_prime_UTR 45.0%
GAGCTCGTTCTTCAAATGGA+TGG + tig0029145:42944-42963 Msa1440940:three_prime_UTR 45.0%
AAGATGCATCTCATGTCCCA+AGG + tig0029145:43078-43097 Msa1440940:three_prime_UTR 45.0%
ACCTCGTCCTATTCAAACGA+CGG - tig0029145:43109-43128 Msa1440940:intergenic 45.0%
TTGAGCAAGCATGCTGAACA+TGG + tig0029145:43264-43283 Msa1440940:three_prime_UTR 45.0%
CCAGAAGTTTAGTGTTCCCA+AGG - tig0029145:43475-43494 Msa1440940:intergenic 45.0%
CCTTGGGAACACTAAACTTC+TGG + tig0029145:43472-43491 Msa1440940:three_prime_UTR 45.0%
CACTAAACTTCTGGGTGGTT+TGG + tig0029145:43481-43500 Msa1440940:three_prime_UTR 45.0%
!! TGGTTGGTTGGTTGGTTCTG+CGG - tig0029145:39080-39099 Msa1440940:intergenic 50.0%
CCTGTCCAACACCATCACAA+AGG - tig0029145:39699-39718 Msa1440940:intergenic 50.0%
! CCTTTGTGATGGTGTTGGAC+AGG + tig0029145:39696-39715 Msa1440940:intron 50.0%
ATTACCTCACCGTTGCACCA+AGG - tig0029145:40603-40622 Msa1440940:intergenic 50.0%
GAGGTAATTGCCTTGCGAGT+TGG + tig0029145:40615-40634 Msa1440940:intron 50.0%
! GTAATTGCCTTGCGAGTTGG+AGG + tig0029145:40618-40637 Msa1440940:intron 50.0%
CAATTCATGAGGCTCCCACT+AGG - tig0029145:40718-40737 Msa1440940:intergenic 50.0%
CTAGTGGGAGCCTCATGAAT+TGG + tig0029145:40716-40735 Msa1440940:intron 50.0%
GAGGGAAGAATGAGCATCTG+AGG + tig0029145:41333-41352 Msa1440940:intron 50.0%
TTAGACTCCAGACTCGATCG+TGG - tig0029145:41632-41651 Msa1440940:intergenic 50.0%
TGAGTAGTTAACACGGTGCG+AGG + tig0029145:41946-41965 Msa1440940:intron 50.0%
TTAACACGGTGCGAGGAAGA+TGG + tig0029145:41953-41972 Msa1440940:CDS 50.0%
TGTGGATGGTCCATGCAGAT+AGG - tig0029145:42053-42072 Msa1440940:intergenic 50.0%
! TAGGGGCACAGTATTAGGCT+GGG + tig0029145:42525-42544 Msa1440940:three_prime_UTR 50.0%
TGGAATTGCGTAGGCATGCT+AGG + tig0029145:42632-42651 Msa1440940:three_prime_UTR 50.0%
ACATCAGAGGGACGAGAAGT+AGG - tig0029145:42667-42686 Msa1440940:intergenic 50.0%
ATCCGACAAGAGAACAAGCG+TGG + tig0029145:42689-42708 Msa1440940:three_prime_UTR 50.0%
TGCCACGCTTGTTCTCTTGT+CGG - tig0029145:42694-42713 Msa1440940:intergenic 50.0%
GCTATTCAGTCTGCCATACC+AGG + tig0029145:42754-42773 Msa1440940:three_prime_UTR 50.0%
AACTACCACAGCTCCTGGTA+TGG - tig0029145:42770-42789 Msa1440940:intergenic 50.0%
ATACCAGGAGCTGTGGTAGT+TGG + tig0029145:42769-42788 Msa1440940:three_prime_UTR 50.0%
TACCAGGAGCTGTGGTAGTT+GGG + tig0029145:42770-42789 Msa1440940:three_prime_UTR 50.0%
!! GGTATTGGTAGGTTACCAGG+TGG + tig0029145:42817-42836 Msa1440940:three_prime_UTR 50.0%
ATTGGTAGGTTACCAGGTGG+TGG + tig0029145:42820-42839 Msa1440940:three_prime_UTR 50.0%
! TAGGTTACCAGGTGGTGGTA+GGG + tig0029145:42825-42844 Msa1440940:three_prime_UTR 50.0%
TGACCGTCGTCGCTATCTTT+GGG + tig0029145:42987-43006 Msa1440940:three_prime_UTR 50.0%
TCACCCAAAGATAGCGACGA+CGG - tig0029145:42993-43012 Msa1440940:intergenic 50.0%
ATGCATCTCATGTCCCAAGG+AGG + tig0029145:43081-43100 Msa1440940:three_prime_UTR 50.0%
GGGAACACTAAACTTCTGGG+TGG + tig0029145:43476-43495 Msa1440940:three_prime_UTR 50.0%
! TGGTTTGGCAGACTGTTGCA+TGG + tig0029145:43496-43515 Msa1440940:three_prime_UTR 50.0%
GTAGGGTTATCAGGGTAGGC+AGG - tig0029145:39729-39748 Msa1440940:intergenic 55.0%
TCATGAGGCTCCCACTAGGT+GGG - tig0029145:40714-40733 Msa1440940:intergenic 55.0%
TTCATGAGGCTCCCACTAGG+TGG - tig0029145:40715-40734 Msa1440940:intergenic 55.0%
TCACCCTGTCTCGATCCTTG+TGG - tig0029145:42349-42368 Msa1440940:intergenic 55.0%
! GTAGGGGCACAGTATTAGGC+TGG + tig0029145:42524-42543 Msa1440940:three_prime_UTR 55.0%
AGGCTGGGAGGTTGTTGAAG+AGG + tig0029145:42540-42559 Msa1440940:three_prime_UTR 55.0%
ACCAGGAGCTGTGGTAGTTG+GGG + tig0029145:42771-42790 Msa1440940:three_prime_UTR 55.0%
! GTAGGTTACCAGGTGGTGGT+AGG + tig0029145:42824-42843 Msa1440940:three_prime_UTR 55.0%
! TTACCAGGTGGTGGTAGGGA+GGG + tig0029145:42829-42848 Msa1440940:three_prime_UTR 55.0%
CTGACCGTCGTCGCTATCTT+TGG + tig0029145:42986-43005 Msa1440940:three_prime_UTR 55.0%
GCCGTCGTTTGAATAGGACG+AGG + tig0029145:43105-43124 Msa1440940:three_prime_UTR 55.0%
CCAGGCGAGGCAACAGCTTA+TGG - tig0029145:39774-39793 Msa1440940:intergenic 60.0%
CCATAAGCTGTTGCCTCGCC+TGG + tig0029145:39771-39790 Msa1440940:intron 60.0%
TACGGTCAGAGGGCAAGCCT+TGG + tig0029145:40583-40602 Msa1440940:intron 60.0%
! GAGGGCAAGCCTTGGTGCAA+CGG + tig0029145:40591-40610 Msa1440940:intron 60.0%
! CAAGCCTTGGTGCAACGGTG+AGG + tig0029145:40596-40615 Msa1440940:intron 60.0%
GCAGGACAGGGCTGTTCTTG+AGG + tig0029145:42441-42460 Msa1440940:three_prime_UTR 60.0%
GGACAGGGCTGTTCTTGAGG+AGG + tig0029145:42444-42463 Msa1440940:three_prime_UTR 60.0%
GGGCACAGTATTAGGCTGGG+AGG + tig0029145:42528-42547 Msa1440940:three_prime_UTR 60.0%
GTCTGCCATACCAGGAGCTG+TGG + tig0029145:42762-42781 Msa1440940:three_prime_UTR 60.0%
TCCCCAACTACCACAGCTCC+TGG - tig0029145:42775-42794 Msa1440940:intergenic 60.0%
! GTTACCAGGTGGTGGTAGGG+AGG + tig0029145:42828-42847 Msa1440940:three_prime_UTR 60.0%
! TACCAGGTGGTGGTAGGGAG+GGG + tig0029145:42830-42849 Msa1440940:three_prime_UTR 60.0%
AGGGAGGGGAGCAATGGCAA+TGG + tig0029145:42844-42863 Msa1440940:three_prime_UTR 60.0%
TCAAACGACGGCGCCTCCTT+GGG - tig0029145:43097-43116 Msa1440940:intergenic 60.0%
TTCAAACGACGGCGCCTCCT+TGG - tig0029145:43098-43117 Msa1440940:intergenic 60.0%
!! GGAGGCGCCGTCGTTTGAAT+AGG + tig0029145:43099-43118 Msa1440940:three_prime_UTR 60.0%
CCTGTGGCCTCCAACTCGCA+AGG - tig0029145:40628-40647 Msa1440940:intergenic 65.0%
! CCTTGCGAGTTGGAGGCCAC+AGG + tig0029145:40625-40644 Msa1440940:intron 65.0%
! CACTAGGTGGGCTCTCGGGA+GGG - tig0029145:40702-40721 Msa1440940:intergenic 65.0%
CTCCCGAGAGCCCACCTAGT+GGG + tig0029145:40701-40720 Msa1440940:intron 65.0%
! CTCCCACTAGGTGGGCTCTC+GGG - tig0029145:40706-40725 Msa1440940:intergenic 65.0%
! GCTCCCACTAGGTGGGCTCT+CGG - tig0029145:40707-40726 Msa1440940:intergenic 65.0%
CACGGTGCGAGGAAGATGGC+TGG + tig0029145:41957-41976 Msa1440940:CDS 65.0%
GGTGGTAGGGAGGGGAGCAA+TGG + tig0029145:42838-42857 Msa1440940:three_prime_UTR 65.0%
! CCACTAGGTGGGCTCTCGGG+AGG - tig0029145:40703-40722 Msa1440940:intergenic 70.0%
CCTCCCGAGAGCCCACCTAG+TGG + tig0029145:40700-40719 Msa1440940:intron 70.0%
CTCCCCTCCCTACCACCACC+TGG - tig0029145:42835-42854 Msa1440940:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0029145 gene 38963 43670 38963 ID=Msa1440940;Name=Msa1440940
tig0029145 mRNA 38963 43670 38963 ID=Msa1440940-mRNA-1;Parent=Msa1440940;Name=Msa1440940-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.66|0.75|1|0|0|4|1240|93
tig0029145 exon 38963 38966 38963 ID=Msa1440940-mRNA-1:exon:12541;Parent=Msa1440940-mRNA-1
tig0029145 exon 41953 42241 41953 ID=Msa1440940-mRNA-1:exon:12542;Parent=Msa1440940-mRNA-1
tig0029145 exon 42353 43168 42353 ID=Msa1440940-mRNA-1:exon:12543;Parent=Msa1440940-mRNA-1
tig0029145 exon 43258 43670 43258 ID=Msa1440940-mRNA-1:exon:12544;Parent=Msa1440940-mRNA-1
tig0029145 CDS 38963 38966 38963 ID=Msa1440940-mRNA-1:cds;Parent=Msa1440940-mRNA-1
tig0029145 CDS 41953 42230 41953 ID=Msa1440940-mRNA-1:cds;Parent=Msa1440940-mRNA-1
tig0029145 three_prime_UTR 42231 42241 42231 ID=Msa1440940-mRNA-1:three_prime_utr;Parent=Msa1440940-mRNA-1
tig0029145 three_prime_UTR 42353 43168 42353 ID=Msa1440940-mRNA-1:three_prime_utr;Parent=Msa1440940-mRNA-1
tig0029145 three_prime_UTR 43258 43670 43258 ID=Msa1440940-mRNA-1:three_prime_utr;Parent=Msa1440940-mRNA-1
Gene Sequence

>Msa1440940

ATGCTTAACACGGTGCGAGGAAGATGGCTGGTTTTAAGCGAAGATTATGTAATGATTCAGATATGCATGCTCTTCACAGAGAATTGGATGAAGTTTCATGTCCTATCTGCATGGACCATCCACATAATGCTGTTCTCCTACTTTGCAGCTCTCATGATAAGGGCTGCAGATCTTACATTTGTGATACAAGTTATAGGCATTCAAATTGTCTGGACCGATTTAAAAATTGAGAGACAACTCTACGGAGAACCCAAATTTACAAAGTTCTTTAATAAACACTAA

Protein sequence

>Msa1440940

MLNTVRGRWLVLSEDYVMIQICMLFTENWMKFHVLSAWTIHIMLFSYFAALMIRAADLTFVIQVIGIQIVWTDLKIERQLYGEPKFTKFFNKH*