AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1446800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446800 MtrunA17_Chr7g0274521 94.152 684 7 2 1 651 1 684 0.0 1305
Msa1446800 MtrunA17_Chr1g0190281 68.619 666 131 7 27 651 1 629 0.0 882
Msa1446800 MtrunA17_Chr1g0169341 57.216 582 216 9 29 591 5 572 0.0 644
Msa1446800 MtrunA17_Chr2g0288551 53.959 341 142 3 32 372 26 351 2.20e-121 373
Msa1446800 MtrunA17_Chr2g0288551 73.684 95 25 0 499 593 414 508 2.29e-40 155
Msa1446800 MtrunA17_Chr1g0169571 48.315 356 174 3 29 383 6 352 3.68e-109 340
Msa1446800 MtrunA17_Chr1g0169571 48.193 166 53 2 495 627 404 569 4.89e-38 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1446800 AT3G04470.1 71.154 624 123 12 27 615 1 602 0.0 839
Msa1446800 AT1G04780.1 57.647 595 195 11 29 590 7 577 0.0 662
Msa1446800 AT3G24210.1 52.960 625 214 14 29 613 5 589 0.0 603
Msa1446800 AT1G62050.1 51.807 332 150 3 33 361 18 342 2.62e-117 364
Msa1446800 AT1G62050.1 63.462 104 38 0 499 602 444 547 6.25e-35 140
Msa1446800 AT1G11740.1 51.961 306 140 2 33 338 17 315 1.90e-105 333
Msa1446800 AT1G11740.1 66.327 98 33 0 499 596 365 462 5.74e-36 144

Find 188 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCTGTAATTCCGTTTAT+TGG 0.141693 tig0031493:+41453 Msa1446800:CDS
TTTCGAATTCTCAAGTTATT+TGG 0.156951 tig0031493:+40760 Msa1446800:five_prime_UTR
TTCACCTTGCCGTGCGTCTT+AGG 0.188029 tig0031493:+41193 Msa1446800:CDS
CTTCTTATGTTTCTTACTTT+TGG 0.208116 tig0031493:-43788 None:intergenic
AGTGAGTAGAGCAGCATTAA+TGG 0.218479 tig0031493:+40329 Msa1446800:five_prime_UTR
GATGGAGAAAGTATGATAAA+TGG 0.236784 tig0031493:+41954 Msa1446800:CDS
AAACATCAAAGAAAACTTCT+AGG 0.244238 tig0031493:+42225 Msa1446800:CDS
AACCTTTGGCTTGGGCTAAA+TGG 0.249992 tig0031493:+41352 Msa1446800:CDS
GACCGAGAGTGAGTATAAAA+AGG 0.256596 tig0031493:+42391 Msa1446800:CDS
TCCCCATAGTTCCTACTATC+AGG 0.267052 tig0031493:+43495 Msa1446800:CDS
CTTCTGATACTTATCGAATA+TGG 0.280746 tig0031493:+41487 Msa1446800:CDS
TCTTCCCAACACCAACAAAA+TGG 0.281649 tig0031493:-40797 None:intergenic
ATCTCTGGTTGCTACCTTCT+GGG 0.299862 tig0031493:-42253 None:intergenic
ATTTGATTTCTTCATTTCAT+TGG 0.309845 tig0031493:+40665 Msa1446800:five_prime_UTR
AATCTCTGGTTGCTACCTTC+TGG 0.313191 tig0031493:-42254 None:intergenic
TGGATGATTGTTCTTGGTTA+GGG 0.315434 tig0031493:-40401 None:intergenic
AGCTTATTCCTCATTTATCT+TGG 0.315637 tig0031493:+41799 Msa1446800:CDS
ATGGATGATTGTTCTTGGTT+AGG 0.326281 tig0031493:-40402 None:intergenic
CCCCTCTGACTCCTTGGATT+TGG 0.333083 tig0031493:-43606 None:intergenic
AGACAGAGATGGTTGGGAAT+TGG 0.337475 tig0031493:+41835 Msa1446800:CDS
CACCCTGATAGTAGGAACTA+TGG 0.343827 tig0031493:-43498 None:intergenic
GAGAGATGGATGATTGTTCT+TGG 0.343990 tig0031493:-40407 None:intergenic
ATGGAGAAAGTATGATAAAT+GGG 0.345852 tig0031493:+41955 Msa1446800:CDS
TTTGCTTGCTCTTTCTCATA+AGG 0.366873 tig0031493:+41650 Msa1446800:CDS
CTGCCTCAGCTTGCTAAGGC+TGG 0.376005 tig0031493:+41069 Msa1446800:CDS
GCATACCTGCAGACTACAAA+TGG 0.384261 tig0031493:+43722 Msa1446800:intron
TCACCTTGCCGTGCGTCTTA+GGG 0.392208 tig0031493:+41194 Msa1446800:CDS
TCAAAGAAAACTTCTAGGTT+TGG 0.392251 tig0031493:+42230 Msa1446800:CDS
TGCACGCCACTATCAACCTT+TGG 0.398920 tig0031493:+41338 Msa1446800:CDS
GTGAAATCAAGACGGGTTCC+AGG 0.400134 tig0031493:+41897 Msa1446800:CDS
CGCGGACCCCTCTGACTCCT+TGG 0.402033 tig0031493:-43612 None:intergenic
AAGCCGCCAGTGGCTAAATC+TGG 0.402963 tig0031493:+43808 Msa1446800:CDS
ATTGGCTTCAAAATTCTCAT+TGG 0.403045 tig0031493:-42120 None:intergenic
GCCACTATCAACCTTTGGCT+TGG 0.405757 tig0031493:+41343 Msa1446800:CDS
TACAACTCCATTTGCTTCCA+TGG 0.407797 tig0031493:-40899 None:intergenic
GGGGTTGATGGTCAAGAAAA+TGG 0.410732 tig0031493:+42086 Msa1446800:CDS
ATTAGATTCTGCACTAAGAA+TGG 0.414337 tig0031493:+42028 Msa1446800:CDS
CAGCCTTAGCAAGCTGAGGC+AGG 0.425876 tig0031493:-41068 None:intergenic
TTAGATTCTGCACTAAGAAT+GGG 0.427745 tig0031493:+42029 Msa1446800:CDS
CCACTATCAACCTTTGGCTT+GGG 0.432807 tig0031493:+41344 Msa1446800:CDS
AAGAGGGAAAAGAGAGAGGT+AGG 0.438577 tig0031493:+40946 Msa1446800:CDS
GTTAAAGAGAAGAAGAGGTT+TGG 0.443930 tig0031493:+42149 Msa1446800:CDS
TTATTCCTCATTTATCTTGG+AGG 0.444172 tig0031493:+41802 Msa1446800:CDS
TGGTTAGGGTTGTTGTTGAT+CGG 0.444381 tig0031493:-40387 None:intergenic
ATCTAATTGCATTCTTTCCT+CGG 0.444640 tig0031493:-42012 None:intergenic
GAGACATCAAGGAGACTTCA+TGG 0.446826 tig0031493:-41734 None:intergenic
CTCTAGTGCAAACCGCCTCT+TGG 0.446843 tig0031493:-41293 None:intergenic
ACAAGGGGAAACATTATGTT+GGG 0.447114 tig0031493:+40836 Msa1446800:five_prime_UTR
TGGGCAACTTCAGCTTCTGT+TGG 0.450855 tig0031493:-41714 None:intergenic
TGTCTCTGCTGAGATATTGA+TGG 0.453651 tig0031493:+41221 Msa1446800:CDS
GATGAAGAGCATGGGGTTGA+TGG 0.454083 tig0031493:+42074 Msa1446800:CDS
AAGAGAAGAAGAGGTTTGGT+TGG 0.456422 tig0031493:+42153 Msa1446800:CDS
GGGGCTATGCGTCCAATAAA+CGG 0.458878 tig0031493:-41465 None:intergenic
TGAAAAGAAACGACGAATGA+AGG 0.461496 tig0031493:+43756 Msa1446800:CDS
TGAGGAGCTTCAGCCAATAG+AGG 0.465572 tig0031493:+43541 Msa1446800:CDS
AAGAGAAGACAGAGATGGTT+GGG 0.468938 tig0031493:+41829 Msa1446800:CDS
CTTCCCAACACCAACAAAAT+GGG 0.471570 tig0031493:-40796 None:intergenic
TGCCCTGCCTCAGCTTGCTA+AGG 0.472258 tig0031493:+41065 Msa1446800:CDS
TGAATAACCATGGAAGCAAA+TGG 0.473903 tig0031493:+40892 Msa1446800:exon
AGTAATTGGATTACCTTGAC+AGG 0.475426 tig0031493:-42560 None:intergenic
CTTCTCTTTAACCACACCAT+TGG 0.475514 tig0031493:-42138 None:intergenic
TACACACAGTCCTGCTCACT+TGG 0.476501 tig0031493:+40999 Msa1446800:CDS
GAAGTACCTGAGCTGAGCTT+AGG 0.480883 tig0031493:-40472 None:intergenic
AGAAGGTAGCAACCAGAGAT+TGG 0.488917 tig0031493:+42256 Msa1446800:CDS
ATCCTGAAAATGTGCAGGGC+TGG 0.496055 tig0031493:-43582 None:intergenic
GAAAGCAAGTGAGAGAGAGA+TGG 0.496341 tig0031493:-40421 None:intergenic
TAAGATGAAATGAGATCTAA+AGG 0.501587 tig0031493:-40359 None:intergenic
TTGGCATCCTGAAAATGTGC+AGG 0.504120 tig0031493:-43587 None:intergenic
GCTGAGATATTGATGGCTGC+TGG 0.504685 tig0031493:+41228 Msa1446800:CDS
GGTGTTGAAAACTCCTCTAT+TGG 0.505364 tig0031493:-43554 None:intergenic
ATACTATTCTTCTATGTCCT+CGG 0.506001 tig0031493:-43851 None:intergenic
TCCACCCATTTGTAGTCTGC+AGG 0.506940 tig0031493:-43727 None:intergenic
GTGACAAGCACCCTGATAGT+AGG 0.507381 tig0031493:-43506 None:intergenic
GAGTTGCTGAAGCAACAATA+CGG 0.509998 tig0031493:-41389 None:intergenic
ACCCTGATAGTAGGAACTAT+GGG 0.510092 tig0031493:-43497 None:intergenic
CTTGCAACTGCCAAGTGAGC+AGG 0.510515 tig0031493:-41009 None:intergenic
CCCAAGCCAAAGGTTGATAG+TGG 0.513722 tig0031493:-41344 None:intergenic
GAAGGAAGTTACAAATGCCT+TGG 0.513831 tig0031493:+41674 Msa1446800:CDS
CGTGCTGATATGACCCTAGC+TGG 0.519065 tig0031493:+41528 Msa1446800:CDS
AGGTTGGTGAGAAGAAGAAG+AGG 0.520249 tig0031493:-40452 None:intergenic
CGGTGTAGGAGCTGCGAAGA+GGG 0.520624 tig0031493:+40930 Msa1446800:CDS
TGATGGCTGCTGGTGCGGAT+TGG 0.520775 tig0031493:+41238 Msa1446800:CDS
AAAATGTTTGGTCTGATCGT+TGG 0.521844 tig0031493:-41569 None:intergenic
TCAGGCGTCAACCACAATAC+AGG 0.522118 tig0031493:-42422 None:intergenic
AGTTGCTGAAGCAACAATAC+GGG 0.522431 tig0031493:-41388 None:intergenic
TGCTCTTTCTCATAAGGAGA+AGG 0.524103 tig0031493:+41656 Msa1446800:CDS
GAGTTTCTGAAGGATGATAG+TGG 0.526156 tig0031493:+42299 Msa1446800:CDS
GTTTACAGAACGAGCATGGT+TGG 0.527407 tig0031493:+41262 Msa1446800:CDS
TGAATCTTAAAACTCATGAA+TGG 0.533740 tig0031493:-40689 None:intergenic
ACAAATGCCTTGGAAGGGGC+TGG 0.535652 tig0031493:+41684 Msa1446800:CDS
TGAAGTGGCGTCTCTCTAGC+AGG 0.536381 tig0031493:-41174 None:intergenic
TTGTGTACCAGCCCCTTCCA+AGG 0.538938 tig0031493:-41691 None:intergenic
AGAGGTAGGAGATAAATCCA+TGG 0.539128 tig0031493:+40960 Msa1446800:CDS
CAAGAGAAGACAGAGATGGT+TGG 0.541147 tig0031493:+41828 Msa1446800:CDS
ACTTCTAGGTTTGGCCCAGA+AGG 0.545633 tig0031493:+42239 Msa1446800:CDS
CCATCTCCAGATTTAGCCAC+TGG 0.545865 tig0031493:-43814 None:intergenic
GACAAGGGGAAACATTATGT+TGG 0.546116 tig0031493:+40835 Msa1446800:five_prime_UTR
AGCCTTAGCAAGCTGAGGCA+GGG 0.548264 tig0031493:-41067 None:intergenic
GTGTGGTTAAAGAGAAGAAG+AGG 0.549641 tig0031493:+42144 Msa1446800:CDS
CATATTTGTCTGAGACATCA+AGG 0.550491 tig0031493:-41745 None:intergenic
ATCTAGAAATTGAAAGGACA+AGG 0.552008 tig0031493:+40819 Msa1446800:five_prime_UTR
GGGAAGATCTAGAAATTGAA+AGG 0.553007 tig0031493:+40813 Msa1446800:five_prime_UTR
GAAATGAGATCTAAAGGTGG+TGG 0.553336 tig0031493:-40353 None:intergenic
CATACCTGCAGACTACAAAT+GGG 0.560618 tig0031493:+43723 Msa1446800:CDS
TAGGGTTGTTGTTGATCGGA+CGG 0.561432 tig0031493:-40383 None:intergenic
CATATTCGATAAGTATCAGA+AGG 0.561679 tig0031493:-41486 None:intergenic
CACCAACCTAAGCTCAGCTC+AGG 0.567112 tig0031493:+40466 Msa1446800:five_prime_UTR
CCCCATAGTTCCTACTATCA+GGG 0.568271 tig0031493:+43496 Msa1446800:CDS
ATATTTAGTCAAATCCTCCA+TGG 0.568458 tig0031493:-40977 None:intergenic
TCAGCTTGCTAAGGCTGGTG+AGG 0.570063 tig0031493:+41074 Msa1446800:CDS
GAAGTTACAAATGCCTTGGA+AGG 0.570245 tig0031493:+41678 Msa1446800:CDS
AGACGCACGGCAAGGTGAAG+TGG 0.570931 tig0031493:-41189 None:intergenic
TGATAGTGGAGACACCAAGA+AGG 0.572604 tig0031493:+42313 Msa1446800:CDS
AGTTACAAATGCCTTGGAAG+GGG 0.572755 tig0031493:+41680 Msa1446800:CDS
AATGGAGTTGTACATGATAA+CGG 0.575756 tig0031493:+40910 Msa1446800:CDS
GATATTGATGGCTGCTGGTG+CGG 0.579629 tig0031493:+41233 Msa1446800:CDS
TTTGCTAAAATGTCAAGTAG+AGG 0.583134 tig0031493:-42473 None:intergenic
AAGTTACAAATGCCTTGGAA+GGG 0.583456 tig0031493:+41679 Msa1446800:CDS
TGACGCCTCCAAGATAAATG+AGG 0.587195 tig0031493:-41807 None:intergenic
CCAGTGGCTAAATCTGGAGA+TGG 0.587770 tig0031493:+43814 Msa1446800:CDS
ACCAGGTATTGATGTTACTC+AGG 0.588660 tig0031493:+41773 Msa1446800:CDS
GCAGACCATCAAAACCAGCT+AGG 0.589389 tig0031493:-41542 None:intergenic
ACTATCATCCTTCAGAAACT+CGG 0.589398 tig0031493:-42297 None:intergenic
TGGAGTTTACAGAACGAGCA+TGG 0.589521 tig0031493:+41258 Msa1446800:CDS
CACCATTTAGCCCAAGCCAA+AGG 0.589547 tig0031493:-41354 None:intergenic
TGCCAAATCCAAGGAGTCAG+AGG 0.590771 tig0031493:+43604 Msa1446800:CDS
TTATGACATGCTTAATGTGA+TGG 0.591587 tig0031493:+41869 Msa1446800:CDS
TACCTGAGCTGAGCTTAGGT+TGG 0.595456 tig0031493:-40468 None:intergenic
TCTTCATCTGTCATAGCACC+TGG 0.595571 tig0031493:-41915 None:intergenic
AAGTAGAGGCAGAAGTTCGT+CGG 0.598695 tig0031493:-42459 None:intergenic
TGCTGAACTTCGAGCTGATG+AGG 0.602314 tig0031493:+41122 Msa1446800:CDS
GACGTGACCATGCTGCTCTT+AGG 0.602494 tig0031493:+41031 Msa1446800:CDS
GATAGCATCCGAGTTTCTGA+AGG 0.602685 tig0031493:+42289 Msa1446800:CDS
GCCAAATCCAAGGAGTCAGA+GGG 0.603764 tig0031493:+43605 Msa1446800:CDS
CAGACCATCAAAACCAGCTA+GGG 0.604694 tig0031493:-41541 None:intergenic
AACTCAAGATTGAATAACCA+TGG 0.604913 tig0031493:+40882 Msa1446800:exon
TGGAGAGGGTTATACTTCAG+AGG 0.609321 tig0031493:+41599 Msa1446800:CDS
GTTGTACATGATAACGGTGT+AGG 0.610004 tig0031493:+40916 Msa1446800:CDS
TTGACAACTAAGCTTCCTCA+AGG 0.610439 tig0031493:+42530 Msa1446800:CDS
GCCTGAGTAACATCAATACC+TGG 0.611696 tig0031493:-41774 None:intergenic
CTTGTGAAGATGAAGAGCAT+GGG 0.612831 tig0031493:+42066 Msa1446800:CDS
TGGAGACACCAAGAAGGGAA+AGG 0.612892 tig0031493:+42319 Msa1446800:CDS
AGAGGCGGTTTGCACTAGAG+AGG 0.614004 tig0031493:+41296 Msa1446800:CDS
AGGGTTTAAGACCTGTATTG+TGG 0.615301 tig0031493:+42411 Msa1446800:CDS
AGACATCAAGGAGACTTCAT+GGG 0.617069 tig0031493:-41733 None:intergenic
CTAGAAATTGAAAGGACAAG+GGG 0.619870 tig0031493:+40821 Msa1446800:five_prime_UTR
CAGACAAATATGTACAGACC+AGG 0.624798 tig0031493:+41756 Msa1446800:CDS
TCTAGAAATTGAAAGGACAA+GGG 0.628469 tig0031493:+40820 Msa1446800:five_prime_UTR
GCGTCAAGAGAAGACAGAGA+TGG 0.634117 tig0031493:+41824 Msa1446800:CDS
TTGGAGTGCTCTCCAAGAGG+CGG 0.635863 tig0031493:+41281 Msa1446800:CDS
TGCGAAGAGGGAAAAGAGAG+AGG 0.636314 tig0031493:+40942 Msa1446800:CDS
TGGAGAAAGTATGATAAATG+GGG 0.636930 tig0031493:+41956 Msa1446800:CDS
AAATGTGCAGGGCTGGAAAG+TGG 0.638368 tig0031493:-43575 None:intergenic
GGTAATTTAACACTGCCACA+TGG 0.639682 tig0031493:+41624 Msa1446800:CDS
ATATTCGATAAGTATCAGAA+GGG 0.640475 tig0031493:-41485 None:intergenic
GCTTGTGAAGATGAAGAGCA+TGG 0.641106 tig0031493:+42065 Msa1446800:CDS
GACATGATCCCTAAGACGCA+CGG 0.642844 tig0031493:-41202 None:intergenic
ACCTGCAGACTACAAATGGG+TGG 0.645216 tig0031493:+43726 Msa1446800:CDS
GGTGAGTGTGAAATCAAGAC+GGG 0.645852 tig0031493:+41890 Msa1446800:CDS
TAGATTCTGCACTAAGAATG+GGG 0.645940 tig0031493:+42030 Msa1446800:CDS
GATCCCTAAGACGCACGGCA+AGG 0.647323 tig0031493:-41197 None:intergenic
GAGGGTTATACTTCAGAGGA+CGG 0.647892 tig0031493:+41603 Msa1446800:CDS
CAAGGGGAAACATTATGTTG+GGG 0.652428 tig0031493:+40837 Msa1446800:five_prime_UTR
TCTCCAGATTTAGCCACTGG+CGG 0.652510 tig0031493:-43811 None:intergenic
CTGAAGTATAACCCTCTCCA+AGG 0.653686 tig0031493:-41596 None:intergenic
GATGAAATGAGATCTAAAGG+TGG 0.654093 tig0031493:-40356 None:intergenic
ACTTATCGAATATGGAAGCG+TGG 0.655889 tig0031493:+41495 Msa1446800:CDS
TCACCAGCCTTAGCAAGCTG+AGG 0.656276 tig0031493:-41072 None:intergenic
GATAGTGGAGACACCAAGAA+GGG 0.657063 tig0031493:+42314 Msa1446800:CDS
CCCAACACCAACAAAATGGG+AGG 0.658973 tig0031493:-40793 None:intergenic
CGATGATGTACTGACTGCCG+AGG 0.679874 tig0031493:+41995 Msa1446800:CDS
TATTCGATAAGTATCAGAAG+GGG 0.683749 tig0031493:-41484 None:intergenic
CAGCTAGGGTCATATCAGCA+CGG 0.684228 tig0031493:-41527 None:intergenic
TGGCATCCTGAAAATGTGCA+GGG 0.686298 tig0031493:-43586 None:intergenic
TTGACAGGAAAAGTTCCTTG+AGG 0.686960 tig0031493:-42545 None:intergenic
ACGGTGTAGGAGCTGCGAAG+AGG 0.687879 tig0031493:+40929 Msa1446800:CDS
CAACAGTGATGATCCTCCAG+AGG 0.688662 tig0031493:+42196 Msa1446800:CDS
GAAACATAAGAAGCCGCCAG+TGG 0.688809 tig0031493:+43798 Msa1446800:CDS
GTTGCTGAAGCAACAATACG+GGG 0.689609 tig0031493:-41387 None:intergenic
TGGTGAGTGTGAAATCAAGA+CGG 0.693259 tig0031493:+41889 Msa1446800:CDS
AAGGGGAAACATTATGTTGG+GGG 0.699170 tig0031493:+40838 Msa1446800:five_prime_UTR
TGGTTGGAGTGCTCTCCAAG+AGG 0.710548 tig0031493:+41278 Msa1446800:CDS
CCCTGATAGTAGGAACTATG+GGG 0.713342 tig0031493:-43496 None:intergenic
GGTAGGAGATAAATCCATGG+AGG 0.721140 tig0031493:+40963 Msa1446800:CDS
CAATGCGCCTAAGAGCAGCA+TGG 0.725145 tig0031493:-41038 None:intergenic
TTGTGAAGATGAAGAGCATG+GGG 0.728753 tig0031493:+42067 Msa1446800:CDS
AGAGCAAGCAAAGAACCATG+TGG 0.731679 tig0031493:-41639 None:intergenic
CCAAATCCAAGGAGTCAGAG+GGG 0.750244 tig0031493:+43606 Msa1446800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTTCTTCATTTCAT+TGG + tig0031493:40665-40684 Msa1446800:five_prime_UTR 20.0%
!!! TCGAATTTTACTTCAAAATT+TGG + tig0031493:40729-40748 Msa1446800:five_prime_UTR 20.0%
!!! CGAATTTTACTTCAAAATTT+GGG + tig0031493:40730-40749 Msa1446800:five_prime_UTR 20.0%
!!! GAATTTTACTTCAAAATTTG+GGG + tig0031493:40731-40750 Msa1446800:five_prime_UTR 20.0%
!!! AATTTTACTTCAAAATTTGG+GGG + tig0031493:40732-40751 Msa1446800:five_prime_UTR 20.0%
!! ATTAAAAAGAAGAAGAAGAA+AGG + tig0031493:42350-42369 Msa1446800:CDS 20.0%
!! ATCAAATTATATCTAAGTGT+TGG + tig0031493:43182-43201 Msa1446800:intron 20.0%
!! ATCATTATAAAGAACTAGAA+TGG - tig0031493:43274-43293 None:intergenic 20.0%
!!! TAATGACATTTGATTTTGAA+TGG + tig0031493:43439-43458 Msa1446800:intron 20.0%
! TAAGATGAAATGAGATCTAA+AGG - tig0031493:40362-40381 None:intergenic 25.0%
!! AGTAAAGATAAGTTGAAGAT+CGG - tig0031493:40509-40528 None:intergenic 25.0%
! TGAATCTTAAAACTCATGAA+TGG - tig0031493:40692-40711 None:intergenic 25.0%
! TTTCGAATTCTCAAGTTATT+TGG + tig0031493:40760-40779 Msa1446800:five_prime_UTR 25.0%
!! TCGTATTCGTGATTTTTATA+TGG + tig0031493:41410-41429 Msa1446800:CDS 25.0%
! ATATTCGATAAGTATCAGAA+GGG - tig0031493:41488-41507 None:intergenic 25.0%
!! ATGGAGAAAGTATGATAAAT+GGG + tig0031493:41955-41974 Msa1446800:CDS 25.0%
!!! TTTGATGTTTTTAAATCCTC+TGG - tig0031493:42215-42234 None:intergenic 25.0%
! AAACATCAAAGAAAACTTCT+AGG + tig0031493:42225-42244 Msa1446800:CDS 25.0%
!!! ACTTGACATTTTAGCAAATA+AGG + tig0031493:42478-42497 Msa1446800:CDS 25.0%
! GTAACTTTGGTTATAGTAAT+TGG - tig0031493:42577-42596 None:intergenic 25.0%
! AAGTATCATGTGATGATTAT+AGG - tig0031493:42862-42881 None:intergenic 25.0%
! GTCATTATAAAGAACAGTAA+TGG - tig0031493:43426-43445 None:intergenic 25.0%
!!! TGTCACTTTTACAAAATTTG+AGG + tig0031493:43523-43542 Msa1446800:CDS 25.0%
!! CTTCTTATGTTTCTTACTTT+TGG - tig0031493:43791-43810 None:intergenic 25.0%
ATCAAATCTGCAAACAGAAA+AGG - tig0031493:40652-40671 None:intergenic 30.0%
ATCTAGAAATTGAAAGGACA+AGG + tig0031493:40819-40838 Msa1446800:five_prime_UTR 30.0%
TCTAGAAATTGAAAGGACAA+GGG + tig0031493:40820-40839 Msa1446800:five_prime_UTR 30.0%
AACTCAAGATTGAATAACCA+TGG + tig0031493:40882-40901 Msa1446800:exon 30.0%
AATGGAGTTGTACATGATAA+CGG + tig0031493:40910-40929 Msa1446800:CDS 30.0%
ATATTTAGTCAAATCCTCCA+TGG - tig0031493:40980-40999 None:intergenic 30.0%
TATTCGATAAGTATCAGAAG+GGG - tig0031493:41487-41506 None:intergenic 30.0%
CATATTCGATAAGTATCAGA+AGG - tig0031493:41489-41508 None:intergenic 30.0%
CTTCTGATACTTATCGAATA+TGG + tig0031493:41487-41506 Msa1446800:CDS 30.0%
AGCTTATTCCTCATTTATCT+TGG + tig0031493:41799-41818 Msa1446800:CDS 30.0%
TTATTCCTCATTTATCTTGG+AGG + tig0031493:41802-41821 Msa1446800:CDS 30.0%
TTATGACATGCTTAATGTGA+TGG + tig0031493:41869-41888 Msa1446800:CDS 30.0%
! GATGGAGAAAGTATGATAAA+TGG + tig0031493:41954-41973 Msa1446800:CDS 30.0%
! TGGAGAAAGTATGATAAATG+GGG + tig0031493:41956-41975 Msa1446800:CDS 30.0%
ATCTAATTGCATTCTTTCCT+CGG - tig0031493:42015-42034 None:intergenic 30.0%
ATTAGATTCTGCACTAAGAA+TGG + tig0031493:42028-42047 Msa1446800:CDS 30.0%
TTAGATTCTGCACTAAGAAT+GGG + tig0031493:42029-42048 Msa1446800:CDS 30.0%
! ATTGGCTTCAAAATTCTCAT+TGG - tig0031493:42123-42142 None:intergenic 30.0%
!!! AATGAGAATTTTGAAGCCAA+TGG + tig0031493:42122-42141 Msa1446800:CDS 30.0%
TCAAAGAAAACTTCTAGGTT+TGG + tig0031493:42230-42249 Msa1446800:CDS 30.0%
TTTGCTAAAATGTCAAGTAG+AGG - tig0031493:42476-42495 None:intergenic 30.0%
GCATAAAAAGTTCGTAACTT+TGG - tig0031493:42590-42609 None:intergenic 30.0%
ACCTGATAAACATCTGAATT+TGG + tig0031493:42714-42733 Msa1446800:intron 30.0%
ATGTGTCTGTTTCAATTATC+TGG + tig0031493:42778-42797 Msa1446800:intron 30.0%
CATAAGGCAAAATGAATAGA+AGG - tig0031493:43026-43045 None:intergenic 30.0%
ATCTATGATAAGTCAAATCC+AGG - tig0031493:43092-43111 None:intergenic 30.0%
ATGATCTTAGTCATACAACT+GGG - tig0031493:43124-43143 None:intergenic 30.0%
TATGACTAAGATCATCAATC+TGG + tig0031493:43129-43148 Msa1446800:intron 30.0%
ATCCATTCCTGTTCTTTATA+AGG + tig0031493:43345-43364 Msa1446800:intron 30.0%
GATGAAATGAGATCTAAAGG+TGG - tig0031493:40359-40378 None:intergenic 35.0%
TGGATGATTGTTCTTGGTTA+GGG - tig0031493:40404-40423 None:intergenic 35.0%
ATGGATGATTGTTCTTGGTT+AGG - tig0031493:40405-40424 None:intergenic 35.0%
! AAAATCACCTCCCATTTTGT+TGG + tig0031493:40786-40805 Msa1446800:five_prime_UTR 35.0%
GGGAAGATCTAGAAATTGAA+AGG + tig0031493:40813-40832 Msa1446800:five_prime_UTR 35.0%
CTAGAAATTGAAAGGACAAG+GGG + tig0031493:40821-40840 Msa1446800:five_prime_UTR 35.0%
ACAAGGGGAAACATTATGTT+GGG + tig0031493:40836-40855 Msa1446800:five_prime_UTR 35.0%
TGAATAACCATGGAAGCAAA+TGG + tig0031493:40892-40911 Msa1446800:exon 35.0%
AGCTCTGTAATTCCGTTTAT+TGG + tig0031493:41453-41472 Msa1446800:CDS 35.0%
AAAATGTTTGGTCTGATCGT+TGG - tig0031493:41572-41591 None:intergenic 35.0%
! GACCAAACATTTTTGTTCCT+TGG + tig0031493:41579-41598 Msa1446800:CDS 35.0%
CTCCAAGGAACAAAAATGTT+TGG - tig0031493:41584-41603 None:intergenic 35.0%
! AACATTTTTGTTCCTTGGAG+AGG + tig0031493:41584-41603 Msa1446800:CDS 35.0%
! ACATTTTTGTTCCTTGGAGA+GGG + tig0031493:41585-41604 Msa1446800:CDS 35.0%
TTTGCTTGCTCTTTCTCATA+AGG + tig0031493:41650-41669 Msa1446800:CDS 35.0%
AAGTTACAAATGCCTTGGAA+GGG + tig0031493:41679-41698 Msa1446800:CDS 35.0%
! CATATTTGTCTGAGACATCA+AGG - tig0031493:41748-41767 None:intergenic 35.0%
TAGATTCTGCACTAAGAATG+GGG + tig0031493:42030-42049 Msa1446800:CDS 35.0%
GTTAAAGAGAAGAAGAGGTT+TGG + tig0031493:42149-42168 Msa1446800:CDS 35.0%
!! GATGTTTTTAAATCCTCTGG+AGG - tig0031493:42212-42231 None:intergenic 35.0%
ACTATCATCCTTCAGAAACT+CGG - tig0031493:42300-42319 None:intergenic 35.0%
! GTTTTTATCCTTTCCCTTCT+TGG - tig0031493:42330-42349 None:intergenic 35.0%
ACCGAGAGTGAGTATAAAAA+GGG + tig0031493:42392-42411 Msa1446800:CDS 35.0%
! ACCCTTTTTATACTCACTCT+CGG - tig0031493:42396-42415 None:intergenic 35.0%
AGTAATTGGATTACCTTGAC+AGG - tig0031493:42563-42582 None:intergenic 35.0%
GCCAAATTCAGATGTTTATC+AGG - tig0031493:42718-42737 None:intergenic 35.0%
TGAAGAAGAGCAGTAAATCT+TGG - tig0031493:42953-42972 None:intergenic 35.0%
AGATGACCTGATAAACTTGT+CGG + tig0031493:42972-42991 Msa1446800:intron 35.0%
GAAAAACCGACAAGTTTATC+AGG - tig0031493:42981-43000 None:intergenic 35.0%
AACTGACAGAACTCTTCATA+AGG - tig0031493:43042-43061 None:intergenic 35.0%
TTATGAAGAGTTCTGTCAGT+TGG + tig0031493:43041-43060 Msa1446800:intron 35.0%
AATTGGGTGATTATTACACC+TGG + tig0031493:43071-43090 Msa1446800:intron 35.0%
TGATCTTAGTCATACAACTG+GGG - tig0031493:43123-43142 None:intergenic 35.0%
GATGATCTTAGTCATACAAC+TGG - tig0031493:43125-43144 None:intergenic 35.0%
ACTAAGATCATCAATCTGGT+TGG + tig0031493:43133-43152 Msa1446800:intron 35.0%
CTCCTTATAAAGAACAGGAA+TGG - tig0031493:43350-43369 None:intergenic 35.0%
TCAAGCTCCTTATAAAGAAC+AGG - tig0031493:43355-43374 None:intergenic 35.0%
TCATGGATTTCATGGATGAA+AGG + tig0031493:43635-43654 Msa1446800:intron 35.0%
! CATTCGTCGTTTCTTTTCAT+TGG - tig0031493:43755-43774 None:intergenic 35.0%
TGAAAAGAAACGACGAATGA+AGG + tig0031493:43756-43775 Msa1446800:CDS 35.0%
AGTGAGTAGAGCAGCATTAA+TGG + tig0031493:40329-40348 Msa1446800:five_prime_UTR 40.0%
GAAATGAGATCTAAAGGTGG+TGG - tig0031493:40356-40375 None:intergenic 40.0%
! TGGTTAGGGTTGTTGTTGAT+CGG - tig0031493:40390-40409 None:intergenic 40.0%
GAGAGATGGATGATTGTTCT+TGG - tig0031493:40410-40429 None:intergenic 40.0%
CTTCCCAACACCAACAAAAT+GGG - tig0031493:40799-40818 None:intergenic 40.0%
TCTTCCCAACACCAACAAAA+TGG - tig0031493:40800-40819 None:intergenic 40.0%
GACAAGGGGAAACATTATGT+TGG + tig0031493:40835-40854 Msa1446800:five_prime_UTR 40.0%
CAAGGGGAAACATTATGTTG+GGG + tig0031493:40837-40856 Msa1446800:five_prime_UTR 40.0%
AAGGGGAAACATTATGTTGG+GGG + tig0031493:40838-40857 Msa1446800:five_prime_UTR 40.0%
TACAACTCCATTTGCTTCCA+TGG - tig0031493:40902-40921 None:intergenic 40.0%
!! GTTGTACATGATAACGGTGT+AGG + tig0031493:40916-40935 Msa1446800:CDS 40.0%
AGAGGTAGGAGATAAATCCA+TGG + tig0031493:40960-40979 Msa1446800:CDS 40.0%
TGTCTCTGCTGAGATATTGA+TGG + tig0031493:41221-41240 Msa1446800:CDS 40.0%
AGTTGCTGAAGCAACAATAC+GGG - tig0031493:41391-41410 None:intergenic 40.0%
GAGTTGCTGAAGCAACAATA+CGG - tig0031493:41392-41411 None:intergenic 40.0%
ACTTATCGAATATGGAAGCG+TGG + tig0031493:41495-41514 Msa1446800:CDS 40.0%
GGTAATTTAACACTGCCACA+TGG + tig0031493:41624-41643 Msa1446800:CDS 40.0%
TGCTCTTTCTCATAAGGAGA+AGG + tig0031493:41656-41675 Msa1446800:CDS 40.0%
GAAGGAAGTTACAAATGCCT+TGG + tig0031493:41674-41693 Msa1446800:CDS 40.0%
GAAGTTACAAATGCCTTGGA+AGG + tig0031493:41678-41697 Msa1446800:CDS 40.0%
AGTTACAAATGCCTTGGAAG+GGG + tig0031493:41680-41699 Msa1446800:CDS 40.0%
AGACATCAAGGAGACTTCAT+GGG - tig0031493:41736-41755 None:intergenic 40.0%
CAGACAAATATGTACAGACC+AGG + tig0031493:41756-41775 Msa1446800:CDS 40.0%
!! ACCAGGTATTGATGTTACTC+AGG + tig0031493:41773-41792 Msa1446800:CDS 40.0%
AAGAGAAGACAGAGATGGTT+GGG + tig0031493:41829-41848 Msa1446800:CDS 40.0%
TGGTGAGTGTGAAATCAAGA+CGG + tig0031493:41889-41908 Msa1446800:CDS 40.0%
! AGATGAAGAGCTTTTTGCTG+TGG + tig0031493:41929-41948 Msa1446800:CDS 40.0%
! CTTGTGAAGATGAAGAGCAT+GGG + tig0031493:42066-42085 Msa1446800:CDS 40.0%
! TTGTGAAGATGAAGAGCATG+GGG + tig0031493:42067-42086 Msa1446800:CDS 40.0%
!!! GAATTTTGAAGCCAATGGTG+TGG + tig0031493:42127-42146 Msa1446800:CDS 40.0%
CTTCTCTTTAACCACACCAT+TGG - tig0031493:42141-42160 None:intergenic 40.0%
GTGTGGTTAAAGAGAAGAAG+AGG + tig0031493:42144-42163 Msa1446800:CDS 40.0%
! AAGAGAAGAAGAGGTTTGGT+TGG + tig0031493:42153-42172 Msa1446800:CDS 40.0%
! TCTTTTGATCAGCCAATCTC+TGG - tig0031493:42271-42290 None:intergenic 40.0%
! GAGTTTCTGAAGGATGATAG+TGG + tig0031493:42299-42318 Msa1446800:CDS 40.0%
GACCGAGAGTGAGTATAAAA+AGG + tig0031493:42391-42410 Msa1446800:CDS 40.0%
! AGGGTTTAAGACCTGTATTG+TGG + tig0031493:42411-42430 Msa1446800:CDS 40.0%
!!! GAAGTTCGTCGGTTTTCAAT+GGG - tig0031493:42451-42470 None:intergenic 40.0%
!!! AGAAGTTCGTCGGTTTTCAA+TGG - tig0031493:42452-42471 None:intergenic 40.0%
TTGACAACTAAGCTTCCTCA+AGG + tig0031493:42530-42549 Msa1446800:CDS 40.0%
TTGACAGGAAAAGTTCCTTG+AGG - tig0031493:42548-42567 None:intergenic 40.0%
! TCAAGGAACTTTTCCTGTCA+AGG + tig0031493:42547-42566 Msa1446800:CDS 40.0%
TTACCTGTAGTTGCCTTCTA+TGG + tig0031493:42651-42670 Msa1446800:intron 40.0%
TACCTGTAGTTGCCTTCTAT+GGG + tig0031493:42652-42671 Msa1446800:intron 40.0%
CAAAATGAATAGAAGGCAGG+GGG - tig0031493:43019-43038 None:intergenic 40.0%
GCAAAATGAATAGAAGGCAG+GGG - tig0031493:43020-43039 None:intergenic 40.0%
GGCAAAATGAATAGAAGGCA+GGG - tig0031493:43021-43040 None:intergenic 40.0%
AGGCAAAATGAATAGAAGGC+AGG - tig0031493:43022-43041 None:intergenic 40.0%
TGTCAGTTGGCAGAGAAAAT+TGG + tig0031493:43054-43073 Msa1446800:intron 40.0%
GTCAGTTGGCAGAGAAAATT+GGG + tig0031493:43055-43074 Msa1446800:intron 40.0%
AATAATCTCTTGTGCTGCAC+AGG + tig0031493:43466-43485 Msa1446800:intron 40.0%
ACCCTGATAGTAGGAACTAT+GGG - tig0031493:43500-43519 None:intergenic 40.0%
! GGTGTTGAAAACTCCTCTAT+TGG - tig0031493:43557-43576 None:intergenic 40.0%
!! TTTTCAGGATGCCAAATCCA+AGG + tig0031493:43595-43614 Msa1446800:CDS 40.0%
TGGATTTCATGGATGAAAGG+AGG + tig0031493:43638-43657 Msa1446800:intron 40.0%
CTCTGACAGTCACAGATATA+AGG + tig0031493:43681-43700 Msa1446800:intron 40.0%
CATACCTGCAGACTACAAAT+GGG + tig0031493:43723-43742 Msa1446800:CDS 40.0%
! TAGGGTTGTTGTTGATCGGA+CGG - tig0031493:40386-40405 None:intergenic 45.0%
GAAAGCAAGTGAGAGAGAGA+TGG - tig0031493:40424-40443 None:intergenic 45.0%
!! AGGTTGGTGAGAAGAAGAAG+AGG - tig0031493:40455-40474 None:intergenic 45.0%
! ACCTCCCATTTTGTTGGTGT+TGG + tig0031493:40792-40811 Msa1446800:five_prime_UTR 45.0%
!! CCTCCCATTTTGTTGGTGTT+GGG + tig0031493:40793-40812 Msa1446800:five_prime_UTR 45.0%
AAGAGGGAAAAGAGAGAGGT+AGG + tig0031493:40946-40965 Msa1446800:CDS 45.0%
GGTAGGAGATAAATCCATGG+AGG + tig0031493:40963-40982 Msa1446800:CDS 45.0%
TGGAGTTTACAGAACGAGCA+TGG + tig0031493:41258-41277 Msa1446800:CDS 45.0%
GTTTACAGAACGAGCATGGT+TGG + tig0031493:41262-41281 Msa1446800:CDS 45.0%
! CCACTATCAACCTTTGGCTT+GGG + tig0031493:41344-41363 Msa1446800:CDS 45.0%
!! AACCTTTGGCTTGGGCTAAA+TGG + tig0031493:41352-41371 Msa1446800:CDS 45.0%
GTTGCTGAAGCAACAATACG+GGG - tig0031493:41390-41409 None:intergenic 45.0%
!!! ATGACCCTAGCTGGTTTTGA+TGG + tig0031493:41537-41556 Msa1446800:CDS 45.0%
CAGACCATCAAAACCAGCTA+GGG - tig0031493:41544-41563 None:intergenic 45.0%
CTGAAGTATAACCCTCTCCA+AGG - tig0031493:41599-41618 None:intergenic 45.0%
TGGAGAGGGTTATACTTCAG+AGG + tig0031493:41599-41618 Msa1446800:CDS 45.0%
GAGGGTTATACTTCAGAGGA+CGG + tig0031493:41603-41622 Msa1446800:CDS 45.0%
AGAGCAAGCAAAGAACCATG+TGG - tig0031493:41642-41661 None:intergenic 45.0%
GAGACATCAAGGAGACTTCA+TGG - tig0031493:41737-41756 None:intergenic 45.0%
GCCTGAGTAACATCAATACC+TGG - tig0031493:41777-41796 None:intergenic 45.0%
TGACGCCTCCAAGATAAATG+AGG - tig0031493:41810-41829 None:intergenic 45.0%
CAAGAGAAGACAGAGATGGT+TGG + tig0031493:41828-41847 Msa1446800:CDS 45.0%
AGACAGAGATGGTTGGGAAT+TGG + tig0031493:41835-41854 Msa1446800:CDS 45.0%
GGTGAGTGTGAAATCAAGAC+GGG + tig0031493:41890-41909 Msa1446800:CDS 45.0%
TCTTCATCTGTCATAGCACC+TGG - tig0031493:41918-41937 None:intergenic 45.0%
!! TGAAGAGCTTTTTGCTGTGG+AGG + tig0031493:41932-41951 Msa1446800:CDS 45.0%
GCTTGTGAAGATGAAGAGCA+TGG + tig0031493:42065-42084 Msa1446800:CDS 45.0%
!! GGGGTTGATGGTCAAGAAAA+TGG + tig0031493:42086-42105 Msa1446800:CDS 45.0%
ATCTCTGGTTGCTACCTTCT+GGG - tig0031493:42256-42275 None:intergenic 45.0%
AATCTCTGGTTGCTACCTTC+TGG - tig0031493:42257-42276 None:intergenic 45.0%
AGAAGGTAGCAACCAGAGAT+TGG + tig0031493:42256-42275 Msa1446800:CDS 45.0%
GATAGCATCCGAGTTTCTGA+AGG + tig0031493:42289-42308 Msa1446800:CDS 45.0%
!! TGATAGTGGAGACACCAAGA+AGG + tig0031493:42313-42332 Msa1446800:CDS 45.0%
!! GATAGTGGAGACACCAAGAA+GGG + tig0031493:42314-42333 Msa1446800:CDS 45.0%
! TCGGTTTTCAATGGGAAGTC+AGG - tig0031493:42443-42462 None:intergenic 45.0%
AAGTAGAGGCAGAAGTTCGT+CGG - tig0031493:42462-42481 None:intergenic 45.0%
AGTTGTGAAACCTAAGCGAC+TGG - tig0031493:42740-42759 None:intergenic 45.0%
! ATGTGTCACTCTTTGTGCTG+TGG + tig0031493:43236-43255 Msa1446800:intron 45.0%
! ATGTGTCACTCTTTGTGCTG+TGG + tig0031493:43236-43255 Msa1446800:intron 45.0%
TCCCCATAGTTCCTACTATC+AGG + tig0031493:43495-43514 Msa1446800:CDS 45.0%
CCCTGATAGTAGGAACTATG+GGG - tig0031493:43499-43518 None:intergenic 45.0%
CCCCATAGTTCCTACTATCA+GGG + tig0031493:43496-43515 Msa1446800:CDS 45.0%
CACCCTGATAGTAGGAACTA+TGG - tig0031493:43501-43520 None:intergenic 45.0%
TGGCATCCTGAAAATGTGCA+GGG - tig0031493:43589-43608 None:intergenic 45.0%
TTGGCATCCTGAAAATGTGC+AGG - tig0031493:43590-43609 None:intergenic 45.0%
CATCCATGAAATCCATGACG+CGG - tig0031493:43633-43652 None:intergenic 45.0%
TTTCATGGATGAAAGGAGGC+CGG + tig0031493:43642-43661 Msa1446800:intron 45.0%
TAGTCTGCAGGTATGCTGAA+AGG - tig0031493:43718-43737 None:intergenic 45.0%
GCATACCTGCAGACTACAAA+TGG + tig0031493:43722-43741 Msa1446800:intron 45.0%
TACCTGAGCTGAGCTTAGGT+TGG - tig0031493:40471-40490 None:intergenic 50.0%
! GAAGTACCTGAGCTGAGCTT+AGG - tig0031493:40475-40494 None:intergenic 50.0%
CCCAACACCAACAAAATGGG+AGG - tig0031493:40796-40815 None:intergenic 50.0%
TGCGAAGAGGGAAAAGAGAG+AGG + tig0031493:40942-40961 Msa1446800:CDS 50.0%
TACACACAGTCCTGCTCACT+TGG + tig0031493:40999-41018 Msa1446800:CDS 50.0%
TGCTGAACTTCGAGCTGATG+AGG + tig0031493:41122-41141 Msa1446800:CDS 50.0%
GACATGATCCCTAAGACGCA+CGG - tig0031493:41205-41224 None:intergenic 50.0%
! GCTGAGATATTGATGGCTGC+TGG + tig0031493:41228-41247 Msa1446800:CDS 50.0%
! GATATTGATGGCTGCTGGTG+CGG + tig0031493:41233-41252 Msa1446800:CDS 50.0%
TGCACGCCACTATCAACCTT+TGG + tig0031493:41338-41357 Msa1446800:CDS 50.0%
GCCACTATCAACCTTTGGCT+TGG + tig0031493:41343-41362 Msa1446800:CDS 50.0%
!! CCCAAGCCAAAGGTTGATAG+TGG - tig0031493:41347-41366 None:intergenic 50.0%
CACCATTTAGCCCAAGCCAA+AGG - tig0031493:41357-41376 None:intergenic 50.0%
GGGGCTATGCGTCCAATAAA+CGG - tig0031493:41468-41487 None:intergenic 50.0%
CAGCTAGGGTCATATCAGCA+CGG - tig0031493:41530-41549 None:intergenic 50.0%
GCAGACCATCAAAACCAGCT+AGG - tig0031493:41545-41564 None:intergenic 50.0%
TGGGCAACTTCAGCTTCTGT+TGG - tig0031493:41717-41736 None:intergenic 50.0%
GCGTCAAGAGAAGACAGAGA+TGG + tig0031493:41824-41843 Msa1446800:CDS 50.0%
! GTGAAATCAAGACGGGTTCC+AGG + tig0031493:41897-41916 Msa1446800:CDS 50.0%
!! GAGCTTTTTGCTGTGGAGGA+TGG + tig0031493:41936-41955 Msa1446800:CDS 50.0%
! GATGAAGAGCATGGGGTTGA+TGG + tig0031493:42074-42093 Msa1446800:CDS 50.0%
CAACAGTGATGATCCTCCAG+AGG + tig0031493:42196-42215 Msa1446800:CDS 50.0%
ACTTCTAGGTTTGGCCCAGA+AGG + tig0031493:42239-42258 Msa1446800:CDS 50.0%
TGGAGACACCAAGAAGGGAA+AGG + tig0031493:42319-42338 Msa1446800:CDS 50.0%
TCAGGCGTCAACCACAATAC+AGG - tig0031493:42425-42444 None:intergenic 50.0%
TGCCCATAGAAGGCAACTAC+AGG - tig0031493:42657-42676 None:intergenic 50.0%
CTGAATTTGGCCAGTCGCTT+AGG + tig0031493:42727-42746 Msa1446800:intron 50.0%
AATGAATAGAAGGCAGGGGG+CGG - tig0031493:43016-43035 None:intergenic 50.0%
! GTGTGTCACTCTTTGTGCTG+TGG + tig0031493:43312-43331 Msa1446800:intron 50.0%
GTGACAAGCACCCTGATAGT+AGG - tig0031493:43509-43528 None:intergenic 50.0%
TGAGGAGCTTCAGCCAATAG+AGG + tig0031493:43541-43560 Msa1446800:CDS 50.0%
AAATGTGCAGGGCTGGAAAG+TGG - tig0031493:43578-43597 None:intergenic 50.0%
! TTCCAGCCCTGCACATTTTC+AGG + tig0031493:43580-43599 Msa1446800:CDS 50.0%
ATCCTGAAAATGTGCAGGGC+TGG - tig0031493:43585-43604 None:intergenic 50.0%
TGCCAAATCCAAGGAGTCAG+AGG + tig0031493:43604-43623 Msa1446800:CDS 50.0%
GCCAAATCCAAGGAGTCAGA+GGG + tig0031493:43605-43624 Msa1446800:CDS 50.0%
CCAAATCCAAGGAGTCAGAG+GGG + tig0031493:43606-43625 Msa1446800:CDS 50.0%
TTCATGGATGAAAGGAGGCC+GGG + tig0031493:43643-43662 Msa1446800:intron 50.0%
ACCTGCAGACTACAAATGGG+TGG + tig0031493:43726-43745 Msa1446800:CDS 50.0%
TCCACCCATTTGTAGTCTGC+AGG - tig0031493:43730-43749 None:intergenic 50.0%
GAAACATAAGAAGCCGCCAG+TGG + tig0031493:43798-43817 Msa1446800:CDS 50.0%
TCTCCAGATTTAGCCACTGG+CGG - tig0031493:43814-43833 None:intergenic 50.0%
CCATCTCCAGATTTAGCCAC+TGG - tig0031493:43817-43836 None:intergenic 50.0%
CCAGTGGCTAAATCTGGAGA+TGG + tig0031493:43814-43833 Msa1446800:CDS 50.0%
CACCAACCTAAGCTCAGCTC+AGG + tig0031493:40466-40485 Msa1446800:five_prime_UTR 55.0%
CTTGCAACTGCCAAGTGAGC+AGG - tig0031493:41012-41031 None:intergenic 55.0%
GACGTGACCATGCTGCTCTT+AGG + tig0031493:41031-41050 Msa1446800:CDS 55.0%
CAATGCGCCTAAGAGCAGCA+TGG - tig0031493:41041-41060 None:intergenic 55.0%
AGCCTTAGCAAGCTGAGGCA+GGG - tig0031493:41070-41089 None:intergenic 55.0%
TCACCAGCCTTAGCAAGCTG+AGG - tig0031493:41075-41094 None:intergenic 55.0%
!! TCAGCTTGCTAAGGCTGGTG+AGG + tig0031493:41074-41093 Msa1446800:CDS 55.0%
TGAAGTGGCGTCTCTCTAGC+AGG - tig0031493:41177-41196 None:intergenic 55.0%
TTCACCTTGCCGTGCGTCTT+AGG + tig0031493:41193-41212 Msa1446800:CDS 55.0%
TCACCTTGCCGTGCGTCTTA+GGG + tig0031493:41194-41213 Msa1446800:CDS 55.0%
! TGGTTGGAGTGCTCTCCAAG+AGG + tig0031493:41278-41297 Msa1446800:CDS 55.0%
! TTGGAGTGCTCTCCAAGAGG+CGG + tig0031493:41281-41300 Msa1446800:CDS 55.0%
CTCTAGTGCAAACCGCCTCT+TGG - tig0031493:41296-41315 None:intergenic 55.0%
AGAGGCGGTTTGCACTAGAG+AGG + tig0031493:41296-41315 Msa1446800:CDS 55.0%
! CGTGCTGATATGACCCTAGC+TGG + tig0031493:41528-41547 Msa1446800:CDS 55.0%
ACAAATGCCTTGGAAGGGGC+TGG + tig0031493:41684-41703 Msa1446800:CDS 55.0%
TTGTGTACCAGCCCCTTCCA+AGG - tig0031493:41694-41713 None:intergenic 55.0%
!! CGATGATGTACTGACTGCCG+AGG + tig0031493:41995-42014 Msa1446800:CDS 55.0%
GTTGCCTTCTATGGGCAGTG+CGG + tig0031493:42660-42679 Msa1446800:intron 55.0%
TTGCCTTCTATGGGCAGTGC+GGG + tig0031493:42661-42680 Msa1446800:intron 55.0%
TATCCCGCACTGCCCATAGA+AGG - tig0031493:42667-42686 None:intergenic 55.0%
ATGAATAGAAGGCAGGGGGC+GGG - tig0031493:43015-43034 None:intergenic 55.0%
CCCCTCTGACTCCTTGGATT+TGG - tig0031493:43609-43628 None:intergenic 55.0%
GGTCCGCGTCATGGATTTCA+TGG + tig0031493:43627-43646 Msa1446800:intron 55.0%
TCATGGATGAAAGGAGGCCG+GGG + tig0031493:43644-43663 Msa1446800:intron 55.0%
TCTGTGACTGTCAGAGTCGC+TGG - tig0031493:43677-43696 None:intergenic 55.0%
AAGCCGCCAGTGGCTAAATC+TGG + tig0031493:43808-43827 Msa1446800:CDS 55.0%
ACGGTGTAGGAGCTGCGAAG+AGG + tig0031493:40929-40948 Msa1446800:CDS 60.0%
CGGTGTAGGAGCTGCGAAGA+GGG + tig0031493:40930-40949 Msa1446800:CDS 60.0%
!! TGCCCTGCCTCAGCTTGCTA+AGG + tig0031493:41065-41084 Msa1446800:CDS 60.0%
CAGCCTTAGCAAGCTGAGGC+AGG - tig0031493:41071-41090 None:intergenic 60.0%
!! CTGCCTCAGCTTGCTAAGGC+TGG + tig0031493:41069-41088 Msa1446800:CDS 60.0%
AGACGCACGGCAAGGTGAAG+TGG - tig0031493:41192-41211 None:intergenic 60.0%
GATCCCTAAGACGCACGGCA+AGG - tig0031493:41200-41219 None:intergenic 60.0%
TGATGGCTGCTGGTGCGGAT+TGG + tig0031493:41238-41257 Msa1446800:CDS 60.0%
TGAATAGAAGGCAGGGGGCG+GGG - tig0031493:43014-43033 None:intergenic 60.0%
CATGGATGAAAGGAGGCCGG+GGG + tig0031493:43645-43664 Msa1446800:intron 60.0%
ATGGATGAAAGGAGGCCGGG+GGG + tig0031493:43646-43665 Msa1446800:intron 60.0%
CAGGGGGCGGGGATGAAAAC+TGG - tig0031493:43003-43022 None:intergenic 65.0%
AGTCAGAGGGGTCCGCGTCA+TGG + tig0031493:43618-43637 Msa1446800:intron 65.0%
TGGATGAAAGGAGGCCGGGG+GGG + tig0031493:43647-43666 Msa1446800:intron 65.0%
TGGAGTGCATCGCAGCACCG+AGG + tig0031493:43834-43853 Msa1446800:CDS 65.0%
CGCGGACCCCTCTGACTCCT+TGG - tig0031493:43615-43634 None:intergenic 70.0%
GAGTCGCTGGACTGCCCCCC+CGG - tig0031493:43664-43683 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0031493 gene 40279 43870 40279 ID=Msa1446800;Name=Msa1446800
tig0031493 mRNA 40279 43870 40279 ID=Msa1446800-mRNA-1;Parent=Msa1446800;Name=Msa1446800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=445|0.66|0.5|1|0.66|0.5|4|0|651
tig0031493 exon 40279 40487 40279 ID=Msa1446800-mRNA-1:exon:15538;Parent=Msa1446800-mRNA-1
tig0031493 exon 40665 42568 40665 ID=Msa1446800-mRNA-1:exon:15539;Parent=Msa1446800-mRNA-1
tig0031493 exon 43488 43627 43488 ID=Msa1446800-mRNA-1:exon:15540;Parent=Msa1446800-mRNA-1
tig0031493 exon 43723 43870 43723 ID=Msa1446800-mRNA-1:exon:15541;Parent=Msa1446800-mRNA-1
tig0031493 five_prime_UTR 40279 40487 40279 ID=Msa1446800-mRNA-1:five_prime_utr;Parent=Msa1446800-mRNA-1
tig0031493 five_prime_UTR 40665 40900 40665 ID=Msa1446800-mRNA-1:five_prime_utr;Parent=Msa1446800-mRNA-1
tig0031493 CDS 40901 42568 40901 ID=Msa1446800-mRNA-1:cds;Parent=Msa1446800-mRNA-1
tig0031493 CDS 43488 43627 43488 ID=Msa1446800-mRNA-1:cds;Parent=Msa1446800-mRNA-1
tig0031493 CDS 43723 43870 43723 ID=Msa1446800-mRNA-1:cds;Parent=Msa1446800-mRNA-1
Gene Sequence

>Msa1446800

ATGGAAGCAAATGGAGTTGTACATGATAACGGTGTAGGAGCTGCGAAGAGGGAAAAGAGAGAGGTAGGAGATAAATCCATGGAGGATTTGACTAAATATACACACAGTCCTGCTCACTTGGCAGTTGCAAGACGTGACCATGCTGCTCTTAGGCGCATTGTTACTGCCCTGCCTCAGCTTGCTAAGGCTGGTGAGGTTAAAAATGAAGCTGAATCTCTTGCTGCTGAACTTCGAGCTGATGAGGTATCGTCTGTTATTGATCGTCGTGATGTACCTGCTAGAGAGACGCCACTTCACCTTGCCGTGCGTCTTAGGGATCATGTCTCTGCTGAGATATTGATGGCTGCTGGTGCGGATTGGAGTTTACAGAACGAGCATGGTTGGAGTGCTCTCCAAGAGGCGGTTTGCACTAGAGAGGAAGCTATTGCTATGATTATTGCACGCCACTATCAACCTTTGGCTTGGGCTAAATGGTGTCGCAGACTTCCCCGTATTGTTGCTTCAGCAACTCGTATTCGTGATTTTTATATGGAGATAACTTTTCATTTTGAAAGCTCTGTAATTCCGTTTATTGGACGCATAGCCCCTTCTGATACTTATCGAATATGGAAGCGTGGTTCTAATCTCCGTGCTGATATGACCCTAGCTGGTTTTGATGGTCTGCGCATCCAACGATCAGACCAAACATTTTTGTTCCTTGGAGAGGGTTATACTTCAGAGGACGGTAATTTAACACTGCCACATGGTTCTTTGCTTGCTCTTTCTCATAAGGAGAAGGAAGTTACAAATGCCTTGGAAGGGGCTGGTACACAACCAACAGAAGCTGAAGTTGCCCATGAAGTCTCCTTGATGTCTCAGACAAATATGTACAGACCAGGTATTGATGTTACTCAGGCTGAGCTTATTCCTCATTTATCTTGGAGGCGTCAAGAGAAGACAGAGATGGTTGGGAATTGGAAAGCAAAAGTTTATGACATGCTTAATGTGATGGTGAGTGTGAAATCAAGACGGGTTCCAGGTGCTATGACAGATGAAGAGCTTTTTGCTGTGGAGGATGGAGAAAGTATGATAAATGGGGAAAACAATGATGAGTACGATGATGTACTGACTGCCGAGGAAAGAATGCAATTAGATTCTGCACTAAGAATGGGGAACTCTGACGCTGCTTGTGAAGATGAAGAGCATGGGGTTGATGGTCAAGAAAATGGTTCATCAGCTTCCAATGAGAATTTTGAAGCCAATGGTGTGGTTAAAGAGAAGAAGAGGTTTGGTTGGAACAAGAAAAGTTTGAAAAGCAACAGTGATGATCCTCCAGAGGATTTAAAAACATCAAAGAAAACTTCTAGGTTTGGCCCAGAAGGTAGCAACCAGAGATTGGCTGATCAAAAGATAGCATCCGAGTTTCTGAAGGATGATAGTGGAGACACCAAGAAGGGAAAGGATAAAAACATTAAAAAGAAGAAGAAGAAAGGAGCAGTTAGCGAGACTAAGACCGAGAGTGAGTATAAAAAGGGTTTAAGACCTGTATTGTGGTTGACGCCTGACTTCCCATTGAAAACCGACGAACTTCTGCCTCTACTTGACATTTTAGCAAATAAGGTTAAAGCTATCAGAAGACTACGAGAGCTTTTGACAACTAAGCTTCCTCAAGGAACTTTTCCTGTCAAGGTTGCTATCCCCATAGTTCCTACTATCAGGGTGCTTGTCACTTTTACAAAATTTGAGGAGCTTCAGCCAATAGAGGAGTTTTCAACACCACTTTCCAGCCCTGCACATTTTCAGGATGCCAAATCCAAGGAGTCAGAGGGCATACCTGCAGACTACAAATGGGTGGACGCCAATGAAAAGAAACGACGAATGAAGGCGAAGAAAGCCAAAAGTAAGAAACATAAGAAGCCGCCAGTGGCTAAATCTGGAGATGGAGTGCATCGCAGCACCGAGGACATAGAAGAATAG
Protein sequence

>Msa1446800

MEANGVVHDNGVGAAKREKREVGDKSMEDLTKYTHSPAHLAVARRDHAALRRIVTALPQLAKAGEVKNEAESLAAELRADEVSSVIDRRDVPARETPLHLAVRLRDHVSAEILMAAGADWSLQNEHGWSALQEAVCTREEAIAMIIARHYQPLAWAKWCRRLPRIVASATRIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGSNLRADMTLAGFDGLRIQRSDQTFLFLGEGYTSEDGNLTLPHGSLLALSHKEKEVTNALEGAGTQPTEAEVAHEVSLMSQTNMYRPGIDVTQAELIPHLSWRRQEKTEMVGNWKAKVYDMLNVMVSVKSRRVPGAMTDEELFAVEDGESMINGENNDEYDDVLTAEERMQLDSALRMGNSDAACEDEEHGVDGQENGSSASNENFEANGVVKEKKRFGWNKKSLKSNSDDPPEDLKTSKKTSRFGPEGSNQRLADQKIASEFLKDDSGDTKKGKDKNIKKKKKKGAVSETKTESEYKKGLRPVLWLTPDFPLKTDELLPLLDILANKVKAIRRLRELLTTKLPQGTFPVKVAIPIVPTIRVLVTFTKFEELQPIEEFSTPLSSPAHFQDAKSKESEGIPADYKWVDANEKKRRMKAKKAKSKKHKKPPVAKSGDGVHRSTEDIEE*