AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449390 MtrunA17_Chr4g0039271 94.318 528 21 2 1 528 1 519 0.0 894
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449390 AT1G51450.1 57.014 442 165 4 25 447 74 509 3.32e-160 466

Find 163 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTTGGTTTGGTATAA+AGG 0.175383 tig0032542:+21047 Msa1449390:CDS
TTTGAAAATCAAGTTGAAAA+TGG 0.186697 tig0032542:+24233 Msa1449390:CDS
GAAGTGTATCCATGGAAATT+AGG 0.190715 tig0032542:-20038 None:intergenic
TGCACAGTTAAGTTCAATTT+TGG 0.226186 tig0032542:+24131 Msa1449390:CDS
AAGAAATCTTAAGTGTAATA+TGG 0.246510 tig0032542:+24512 Msa1449390:exon
TTAACCTCCGGCAACGAAAT+TGG 0.268536 tig0032542:-20405 None:intergenic
TATGGTGAAGGTGATGTTAT+TGG 0.268837 tig0032542:+20978 Msa1449390:CDS
AGATAAAGGTAGTGAGGTTA+GGG 0.291160 tig0032542:+20808 Msa1449390:CDS
GAGATAAAGGTAGTGAGGTT+AGG 0.301462 tig0032542:+20807 Msa1449390:CDS
AAGGCTTTGAGGGAGAATTA+TGG 0.304820 tig0032542:+20945 Msa1449390:CDS
TCAACCATTGGCTTGGGAAT+TGG 0.306015 tig0032542:-24194 None:intergenic
GGGTATGATGGGAATAGTTT+TGG 0.326000 tig0032542:+20891 Msa1449390:CDS
TTGTGACTTTAAAATAGATA+TGG 0.329866 tig0032542:-24773 None:intergenic
AAGTGTATCCATGGAAATTA+GGG 0.338418 tig0032542:-20037 None:intergenic
TTGAAAATCAAGTTGAAAAT+GGG 0.342475 tig0032542:+24234 Msa1449390:CDS
ATGGTGAAGGTGATGTTATT+GGG 0.345667 tig0032542:+20979 Msa1449390:CDS
GGTGGATCTTCCTTAGCATC+TGG 0.361382 tig0032542:-21089 None:intergenic
GGAAGAACCAATTTCGTTGC+CGG 0.373865 tig0032542:+20398 Msa1449390:CDS
GTTCGTGTGGTTGTTATTGT+TGG 0.379535 tig0032542:-20580 None:intergenic
AGGCTTTGAGGGAGAATTAT+GGG 0.380543 tig0032542:+20946 Msa1449390:CDS
AATGGAGAAGGGTGATTTGC+AGG 0.380670 tig0032542:+20860 Msa1449390:CDS
GAAAGTTGCTTCTGCTTCTT+CGG 0.383566 tig0032542:-20357 None:intergenic
TGTCTCCACCGTGGTTGATA+TGG 0.383829 tig0032542:+20176 Msa1449390:CDS
CAGGCACCAGTTGGGTATGA+TGG 0.386637 tig0032542:+20879 Msa1449390:CDS
TCCGTCCAACGACGGAAAAT+CGG 0.390395 tig0032542:+20233 Msa1449390:CDS
GACTAACCAGGTACAACTTT+AGG 0.400387 tig0032542:-21110 None:intergenic
AGGTGGTTCGGCGGAGGGTG+CGG 0.402714 tig0032542:-20127 None:intergenic
CAAAAGGGTATAGAATGGTT+AGG 0.407504 tig0032542:+20748 Msa1449390:CDS
GGAAGCAGGTGGTTCGGCGG+AGG 0.415371 tig0032542:-20133 None:intergenic
TTTACAAATGACTAGGTTAG+TGG 0.418051 tig0032542:+24623 Msa1449390:three_prime_UTR
AATTATGGGGATGAGGGTTA+TGG 0.418179 tig0032542:+20960 Msa1449390:CDS
TTGAATGAGAGTAAATCAAA+TGG 0.425174 tig0032542:+24287 Msa1449390:CDS
GGTTCTTCTTCATCTTCATC+AGG 0.425618 tig0032542:-20330 None:intergenic
TGCTGCTGCTGTGTCAATTC+CGG 0.425892 tig0032542:+20434 Msa1449390:CDS
TTCTTAATATTATTAAATCC+AGG 0.428347 tig0032542:+24668 Msa1449390:three_prime_UTR
GGTGGAGGAAGCAGGTGGTT+CGG 0.429695 tig0032542:-20139 None:intergenic
TGCTTCTGCTTCTTCGGAAG+CGG 0.430953 tig0032542:-20351 None:intergenic
CGAAGAGGAAGATGAAGAAA+TGG 0.435928 tig0032542:+20077 Msa1449390:CDS
GGTTCGACGGTGGAGGAAGC+AGG 0.436928 tig0032542:-20147 None:intergenic
TTATATTTCAGAGGTCTACT+AGG 0.436956 tig0032542:+24699 Msa1449390:three_prime_UTR
TTGACTGAGAAGAAATCTAA+TGG 0.437022 tig0032542:+24260 Msa1449390:CDS
GAAATTGGTTCTTCCTTGAC+AGG 0.440351 tig0032542:-20390 None:intergenic
AGGGAGAATTATGGGGATGA+GGG 0.442350 tig0032542:+20954 Msa1449390:CDS
TTCCTCTTCGTCTTTGTATG+TGG 0.447669 tig0032542:-20064 None:intergenic
TTAAGTGCAGGGAGCACAAA+AGG 0.448508 tig0032542:+20732 Msa1449390:CDS
AGAAATCTTAAGTGTAATAT+GGG 0.448591 tig0032542:+24513 Msa1449390:exon
GTAAGATTCATAAGGCTTTG+AGG 0.449334 tig0032542:+20934 Msa1449390:CDS
AGTGAGGATAGGTTAAGTGC+AGG 0.449423 tig0032542:+20720 Msa1449390:CDS
TTTGGATATAGGGATATTGA+TGG 0.451263 tig0032542:+20909 Msa1449390:CDS
TAAGATTCATAAGGCTTTGA+GGG 0.456790 tig0032542:+20935 Msa1449390:CDS
GAGAGTGGACATACGCGGTT+GGG 0.457544 tig0032542:+20831 Msa1449390:CDS
TTGACTGTGAAGAAATCAAC+AGG 0.457952 tig0032542:+24314 Msa1449390:CDS
AAAATATCCAAAAGGTGAAA+AGG 0.459114 tig0032542:-24748 None:intergenic
GTAGCTTTCAAAGACCTCTA+TGG 0.460094 tig0032542:+24056 Msa1449390:CDS
GGAACTTCAACCATTGGCTT+GGG 0.460214 tig0032542:-24200 None:intergenic
TAGGGCAACAAGAGGGGTAG+TGG 0.460385 tig0032542:+20767 Msa1449390:CDS
GTAGTGAGGTTAGGGGAGAG+TGG 0.460406 tig0032542:+20816 Msa1449390:CDS
AGGAACTTCAACCATTGGCT+TGG 0.462086 tig0032542:-24201 None:intergenic
AAGTTGAGTTGAGTGAGGAT+AGG 0.463307 tig0032542:+20709 Msa1449390:CDS
TTTCGGTGAATTCTTCTGTT+CGG 0.464189 tig0032542:-20292 None:intergenic
TCGACTGAGAAGAAATCAAA+TGG 0.469958 tig0032542:+24341 Msa1449390:CDS
TCGACTGAGAAGAAATCAAA+TGG 0.469958 tig0032542:+24368 Msa1449390:CDS
ATGGTTGAAGTTCCTCATCA+TGG 0.472322 tig0032542:+24209 Msa1449390:CDS
ACTCTTCCTTCTTCTCTCAT+CGG 0.476839 tig0032542:+19968 Msa1449390:five_prime_UTR
TGATGGGAGTAAGATTCATA+AGG 0.484252 tig0032542:+20926 Msa1449390:CDS
GATAAACATATCTTCATCTC+CGG 0.486302 tig0032542:-20666 None:intergenic
GGAGCAAACTTATCTCCATC+AGG 0.486308 tig0032542:-21017 None:intergenic
GAGGGAGAATTATGGGGATG+AGG 0.488008 tig0032542:+20953 Msa1449390:CDS
GTTGTCGTTGTGACGGTTGA+AGG 0.488282 tig0032542:-20105 None:intergenic
GAAGCAGGTGGTTCGGCGGA+GGG 0.494154 tig0032542:-20132 None:intergenic
TTAGTGGTGTAAACTTATGA+AGG 0.496774 tig0032542:+24639 Msa1449390:three_prime_UTR
GTCGTCGCTGTTCCATTCGC+CGG 0.498211 tig0032542:-20468 None:intergenic
TTCGCCGGTGTGGTTGTAGC+CGG 0.498253 tig0032542:-20453 None:intergenic
TTGTCAGGAAACCTCTGTAC+TGG 0.500278 tig0032542:-20630 None:intergenic
TGAGAAGAAATCAGATGAAG+AGG 0.505178 tig0032542:+24481 Msa1449390:CDS
CTATTCCCATCATACCCAAC+TGG 0.505256 tig0032542:-20885 None:intergenic
TCTTAATATTATTAAATCCA+GGG 0.508986 tig0032542:+24669 Msa1449390:three_prime_UTR
TGCTTATAATCCAGATGCTA+AGG 0.510784 tig0032542:+21079 Msa1449390:CDS
CTTCTGTTCGGCAGAGTCGT+CGG 0.512067 tig0032542:-20280 None:intergenic
AAAAGGGTATAGAATGGTTA+GGG 0.519863 tig0032542:+20749 Msa1449390:CDS
AGCGGGTGGTTCGACGGTGG+AGG 0.521228 tig0032542:-20154 None:intergenic
GGGAAATTCTTATATTTCAG+AGG 0.527357 tig0032542:+24690 Msa1449390:three_prime_UTR
GGTGATTTGCAGGCACCAGT+TGG 0.528516 tig0032542:+20870 Msa1449390:CDS
ATCAACCACGGTGGAGACAG+CGG 0.529152 tig0032542:-20172 None:intergenic
GCGATTCCGATGAGAGAAGA+AGG 0.530328 tig0032542:-19974 None:intergenic
GCTACAACCACACCGGCGAA+TGG 0.531990 tig0032542:+20456 Msa1449390:CDS
AGAGTATACATTGAAGCAGC+AGG 0.532295 tig0032542:-24092 None:intergenic
TCCCTCATGATTTCAATGAA+CGG 0.533971 tig0032542:+24171 Msa1449390:CDS
GGGGATGAGGGTTATGGTGA+AGG 0.534213 tig0032542:+20966 Msa1449390:CDS
AACAATAACAACCACACGAA+CGG 0.535403 tig0032542:+20582 Msa1449390:CDS
TGATGAGGAACTTCAACCAT+TGG 0.535810 tig0032542:-24206 None:intergenic
GGCTTTGAGGGAGAATTATG+GGG 0.538168 tig0032542:+20947 Msa1449390:CDS
AGAGTCGTCGGAGGGTTCAT+CGG 0.539004 tig0032542:-20268 None:intergenic
GTGATTTGCAGGCACCAGTT+GGG 0.540685 tig0032542:+20871 Msa1449390:CDS
GGAGACAGCGGGTGGTTCGA+CGG 0.541479 tig0032542:-20160 None:intergenic
GAGGGGTAGTGGAAGGTGCT+TGG 0.542182 tig0032542:+20778 Msa1449390:CDS
GGAGAGTGGACATACGCGGT+TGG 0.542977 tig0032542:+20830 Msa1449390:CDS
CTTAATATTATTAAATCCAG+GGG 0.543097 tig0032542:+24670 Msa1449390:three_prime_UTR
GTTGGGTTGGACAATGGAGA+AGG 0.544198 tig0032542:+20848 Msa1449390:CDS
CGCTGTTCCATTCGCCGGTG+TGG 0.544512 tig0032542:-20463 None:intergenic
TTGGATATAGGGATATTGAT+GGG 0.550063 tig0032542:+20910 Msa1449390:CDS
GAATGGTTAGGGCAACAAGA+GGG 0.550128 tig0032542:+20760 Msa1449390:CDS
TCCGTCGTTGGACGGAGTGG+TGG 0.556296 tig0032542:-20226 None:intergenic
TGAAATATAAGAATTTCCCC+TGG 0.557442 tig0032542:-24686 None:intergenic
GGCCGTTCATTGAAATCATG+AGG 0.557836 tig0032542:-24173 None:intergenic
TAGTGGTGTAAACTTATGAA+GGG 0.558024 tig0032542:+24640 Msa1449390:three_prime_UTR
TGAAAATCAAGTTGAAAATG+GGG 0.558856 tig0032542:+24235 Msa1449390:CDS
GAAATCAGATGAAGAGGCGA+AGG 0.561598 tig0032542:+24433 Msa1449390:CDS
AGGCACCAGTTGGGTATGAT+GGG 0.561997 tig0032542:+20880 Msa1449390:CDS
GCAGCAGCATTGTTAACCTC+CGG 0.563639 tig0032542:-20417 None:intergenic
TCAACCACGGTGGAGACAGC+GGG 0.567122 tig0032542:-20171 None:intergenic
GTGGACATACGCGGTTGGGT+TGG 0.569468 tig0032542:+20835 Msa1449390:CDS
AAATTGATTTACAAATGACT+AGG 0.571172 tig0032542:+24616 Msa1449390:three_prime_UTR
ACTCAAAACCCTAATTTCCA+TGG 0.572184 tig0032542:+20029 Msa1449390:exon
TGTTCGGCAGAGTCGTCGGA+GGG 0.573277 tig0032542:-20276 None:intergenic
TGTCTTCTCCACCGTTCGTG+TGG 0.575419 tig0032542:-20593 None:intergenic
GCAACAAGAGGGGTAGTGGA+AGG 0.575466 tig0032542:+20771 Msa1449390:CDS
GGAGATGAAATCAGATGAAG+AGG 0.575677 tig0032542:+24427 Msa1449390:CDS
TTCCTCTCTGAACCCTGTCA+AGG 0.578436 tig0032542:+20377 Msa1449390:CDS
GAGCACAAAAGGGTATAGAA+TGG 0.579497 tig0032542:+20743 Msa1449390:CDS
CTGTTCGGCAGAGTCGTCGG+AGG 0.586497 tig0032542:-20277 None:intergenic
GGAGAAAGTTGAGTTGAGTG+AGG 0.590150 tig0032542:+20704 Msa1449390:CDS
ACCACCACTCCGTCCAACGA+CGG 0.591554 tig0032542:+20225 Msa1449390:CDS
GAGATTCAATCTGAAAAGAG+AGG 0.592772 tig0032542:-19997 None:intergenic
AAAATCAAATGGAGAGTCGA+AGG 0.593858 tig0032542:+24406 Msa1449390:CDS
TACGCGGTTGGGTTGGACAA+TGG 0.595028 tig0032542:+20842 Msa1449390:CDS
TAAGTGCAGGGAGCACAAAA+GGG 0.599357 tig0032542:+20733 Msa1449390:CDS
TCGTCGGAGGGTTCATCGGA+GGG 0.603476 tig0032542:-20264 None:intergenic
TGTGGCTTGAAGTGTATCCA+TGG 0.604461 tig0032542:-20046 None:intergenic
TAACCAGGTACAACTTTAGG+TGG 0.604839 tig0032542:-21107 None:intergenic
GACAGCGGGTGGTTCGACGG+TGG 0.608842 tig0032542:-20157 None:intergenic
GTGAGGATAGGTTAAGTGCA+GGG 0.610539 tig0032542:+20721 Msa1449390:CDS
GTCGTCGGAGGGTTCATCGG+AGG 0.615642 tig0032542:-20265 None:intergenic
AGTGGTGTAAACTTATGAAG+GGG 0.618642 tig0032542:+24641 Msa1449390:three_prime_UTR
GATCCACCTAAAGTTGTACC+TGG 0.623881 tig0032542:+21104 Msa1449390:CDS
AGATTCAATCTGAAAAGAGA+GGG 0.625169 tig0032542:-19996 None:intergenic
TTGGGTTGGACAATGGAGAA+GGG 0.625725 tig0032542:+20849 Msa1449390:CDS
GGGTGCGGTTGTCGTTGTGA+CGG 0.627697 tig0032542:-20112 None:intergenic
AAATTGGTTCTTCCTTGACA+GGG 0.631947 tig0032542:-20389 None:intergenic
GCCGTTCATTGAAATCATGA+GGG 0.633774 tig0032542:-24172 None:intergenic
GATAAAGGTAGTGAGGTTAG+GGG 0.636348 tig0032542:+20809 Msa1449390:CDS
GGAGGAAGCAGGTGGTTCGG+CGG 0.637457 tig0032542:-20136 None:intergenic
AATGGTTAGGGCAACAAGAG+GGG 0.638305 tig0032542:+20761 Msa1449390:CDS
ACGGCCAATTCCCAAGCCAA+TGG 0.642692 tig0032542:+24190 Msa1449390:CDS
AGAACCAATTTCGTTGCCGG+AGG 0.644292 tig0032542:+20401 Msa1449390:CDS
TTTATCGAAAGTTTACAAAG+CGG 0.645394 tig0032542:+20683 Msa1449390:CDS
GATAGTAACGACCGCCATAG+AGG 0.646862 tig0032542:-24070 None:intergenic
GGAGTGGTGGTAGTAATGAG+AGG 0.647591 tig0032542:-20213 None:intergenic
TGACAAAAGTGACGATACAC+CGG 0.648124 tig0032542:+20647 Msa1449390:CDS
AGCCACATACAAAGACGAAG+AGG 0.649729 tig0032542:+20062 Msa1449390:CDS
AATAACAACCACACGAACGG+TGG 0.652994 tig0032542:+20585 Msa1449390:CDS
TCGACGGTGGAGGAAGCAGG+TGG 0.654043 tig0032542:-20144 None:intergenic
TTCTGATAACACCAGTACAG+AGG 0.656427 tig0032542:+20619 Msa1449390:CDS
TGGTTTGGTATAAAGGACAA+CGG 0.659021 tig0032542:+21054 Msa1449390:CDS
ACCACGGTGGAGACAGCGGG+TGG 0.665511 tig0032542:-20168 None:intergenic
AGAATGGTTAGGGCAACAAG+AGG 0.674035 tig0032542:+20759 Msa1449390:CDS
TTCCTTGACAGGGTTCAGAG+AGG 0.691426 tig0032542:-20379 None:intergenic
GCTTTCAAAGACCTCTATGG+CGG 0.700991 tig0032542:+24059 Msa1449390:CDS
TGTTAATTCCATATCAACCA+CGG 0.707113 tig0032542:-20184 None:intergenic
TAGGGGAGAGTGGACATACG+CGG 0.710781 tig0032542:+20826 Msa1449390:CDS
ACCACCCGCTGTCTCCACCG+TGG 0.719787 tig0032542:+20167 Msa1449390:CDS
TAATTCCATATCAACCACGG+TGG 0.756610 tig0032542:-20181 None:intergenic
AATTCCGGCTACAACCACAC+CGG 0.762987 tig0032542:+20449 Msa1449390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATACCTTTTTATATATTAT+CGG - tig0032542:21774-21793 None:intergenic 10.0%
!! TCATAAATTCATAATATATA+GGG + tig0032542:23642-23661 Msa1449390:intron 10.0%
!!! AATTTTGAACATTATTGATA+GGG + tig0032542:21193-21212 Msa1449390:intron 15.0%
!! TTGTAAATATATTAAACATG+AGG - tig0032542:21708-21727 None:intergenic 15.0%
!! TATTATCAACAGATATAATA+TGG - tig0032542:21808-21827 None:intergenic 15.0%
!! ATTATGAATTTATGACTAAT+GGG - tig0032542:23637-23656 None:intergenic 15.0%
!! TATTATGAATTTATGACTAA+TGG - tig0032542:23638-23657 None:intergenic 15.0%
!! GTCATAAATTCATAATATAT+AGG + tig0032542:23641-23660 Msa1449390:intron 15.0%
!! TTCTTAATATTATTAAATCC+AGG + tig0032542:24668-24687 Msa1449390:three_prime_UTR 15.0%
!! TCTTAATATTATTAAATCCA+GGG + tig0032542:24669-24688 Msa1449390:three_prime_UTR 15.0%
!! AGAAAAAGAATAACAATGTA+TGG + tig0032542:20502-20521 Msa1449390:CDS 20.0%
!! GAAAAAGAATAACAATGTAT+GGG + tig0032542:20503-20522 Msa1449390:CDS 20.0%
!! AAAAACAAAAACAACAACAA+CGG + tig0032542:20552-20571 Msa1449390:CDS 20.0%
!!! TTTTATATTAATTTGCCTGA+TGG + tig0032542:21002-21021 Msa1449390:CDS 20.0%
!!! GAATTTTGAACATTATTGAT+AGG + tig0032542:21192-21211 Msa1449390:intron 20.0%
!!! TTTTCTAGTTTATTATCTCA+TGG + tig0032542:21295-21314 Msa1449390:intron 20.0%
!! AAATCGATAGTTCATTATTT+AGG + tig0032542:21320-21339 Msa1449390:intron 20.0%
!! AATCGATAGTTCATTATTTA+GGG + tig0032542:21321-21340 Msa1449390:intron 20.0%
!! AAAAAACATGAAAAAGTAAC+TGG - tig0032542:21570-21589 None:intergenic 20.0%
!! AAAAAATGTGAAAAAGTAAC+TGG - tig0032542:21637-21656 None:intergenic 20.0%
!! TTCACCGATAATATATAAAA+AGG + tig0032542:21767-21786 Msa1449390:intron 20.0%
!! ATATTCAGATATTCAGATTA+AGG - tig0032542:23530-23549 None:intergenic 20.0%
!! AATATCTGAATATTCACTAT+TGG + tig0032542:23537-23556 Msa1449390:intron 20.0%
!! ATTAGATACACAACTTAATT+GGG + tig0032542:23668-23687 Msa1449390:intron 20.0%
!!! TTTGAAAATCAAGTTGAAAA+TGG + tig0032542:24233-24252 Msa1449390:CDS 20.0%
!!! TTGAAAATCAAGTTGAAAAT+GGG + tig0032542:24234-24253 Msa1449390:CDS 20.0%
!! AAGAAATCTTAAGTGTAATA+TGG + tig0032542:24512-24531 Msa1449390:exon 20.0%
!! AGAAATCTTAAGTGTAATAT+GGG + tig0032542:24513-24532 Msa1449390:exon 20.0%
!!! AAATTGATTTACAAATGACT+AGG + tig0032542:24616-24635 Msa1449390:three_prime_UTR 20.0%
!! CTTAATATTATTAAATCCAG+GGG + tig0032542:24670-24689 Msa1449390:three_prime_UTR 20.0%
! TTTATCGAAAGTTTACAAAG+CGG + tig0032542:20683-20702 Msa1449390:CDS 25.0%
!! CAAACCAAATTCTGATTTTT+CGG - tig0032542:21041-21060 None:intergenic 25.0%
!!! CTGTTTTATGTTTTTGATGT+TGG + tig0032542:21170-21189 Msa1449390:intron 25.0%
!! ACAGTTTGATAATAATCACA+AGG - tig0032542:21239-21258 None:intergenic 25.0%
! ATCGATAGTTCATTATTTAG+GGG + tig0032542:21322-21341 Msa1449390:intron 25.0%
! TAAAATTTAGACACGCTTAA+GGG - tig0032542:21416-21435 None:intergenic 25.0%
! ATAAAATTTAGACACGCTTA+AGG - tig0032542:21417-21436 None:intergenic 25.0%
!!! TAATAACCGTTTTTTGTGAA+AGG + tig0032542:21823-21842 Msa1449390:intron 25.0%
!!! TGGTAAGGTTTATTTTTTGT+GGG - tig0032542:21920-21939 None:intergenic 25.0%
! CCTAGATGCATTAATATAAT+AGG - tig0032542:22215-22234 None:intergenic 25.0%
! CCTATTATATTAATGCATCT+AGG + tig0032542:22212-22231 Msa1449390:intron 25.0%
! ACAGATACATTATACAATAG+AGG - tig0032542:22283-22302 None:intergenic 25.0%
! CTCAGATGATGTTTATTTAT+GGG - tig0032542:22439-22458 None:intergenic 25.0%
! TCTCAGATGATGTTTATTTA+TGG - tig0032542:22440-22459 None:intergenic 25.0%
!! TGAAGAAATAGAAAACCTTT+TGG - tig0032542:22965-22984 None:intergenic 25.0%
! AAAACATATTTAGCAAGACT+GGG + tig0032542:22984-23003 Msa1449390:intron 25.0%
! ATGCTCTTAAGTATATTGAT+TGG + tig0032542:23171-23190 Msa1449390:intron 25.0%
! TTGATCTAGATTTGATTCTA+TGG + tig0032542:23319-23338 Msa1449390:intron 25.0%
! TGATCTAGATTTGATTCTAT+GGG + tig0032542:23320-23339 Msa1449390:intron 25.0%
!!! ACATTTCTATCTTAGTCTTA+GGG + tig0032542:23356-23375 Msa1449390:intron 25.0%
! AATATTCACTATTGGAAGTT+AGG + tig0032542:23545-23564 Msa1449390:intron 25.0%
! CATTAGATACACAACTTAAT+TGG + tig0032542:23667-23686 Msa1449390:intron 25.0%
! AAAACAAGTTAAGCAACTTA+CGG - tig0032542:23779-23798 None:intergenic 25.0%
!!! TTGCTTAACTTGTTTTAGAA+AGG + tig0032542:23783-23802 Msa1449390:intron 25.0%
!!! TGTAAGTTGTATTTTGAGTA+TGG + tig0032542:23949-23968 Msa1449390:intron 25.0%
! GTATGGAATGAAAATTCAAT+TGG + tig0032542:23966-23985 Msa1449390:intron 25.0%
! GAGATATCTTTCTTCAAAAA+TGG + tig0032542:24020-24039 Msa1449390:CDS 25.0%
!!! TGAAAATCAAGTTGAAAATG+GGG + tig0032542:24235-24254 Msa1449390:CDS 25.0%
! TTGAATGAGAGTAAATCAAA+TGG + tig0032542:24287-24306 Msa1449390:CDS 25.0%
!!! AGGATATTTTGTAGTTTGTT+TGG + tig0032542:24719-24738 Msa1449390:three_prime_UTR 25.0%
!!! GGATATTTTGTAGTTTGTTT+GGG + tig0032542:24720-24739 Msa1449390:three_prime_UTR 25.0%
! AAAATATCCAAAAGGTGAAA+AGG - tig0032542:24751-24770 None:intergenic 25.0%
! ATATGGCAAAAATATCCAAA+AGG - tig0032542:24759-24778 None:intergenic 25.0%
AGATTCAATCTGAAAAGAGA+GGG - tig0032542:19999-20018 None:intergenic 30.0%
AAGTGTATCCATGGAAATTA+GGG - tig0032542:20040-20059 None:intergenic 30.0%
TGTTAATTCCATATCAACCA+CGG - tig0032542:20187-20206 None:intergenic 30.0%
GATAAACATATCTTCATCTC+CGG - tig0032542:20669-20688 None:intergenic 30.0%
! AAAAGGGTATAGAATGGTTA+GGG + tig0032542:20749-20768 Msa1449390:CDS 30.0%
!!! TGCTTGGTATTTTGAGATAA+AGG + tig0032542:20794-20813 Msa1449390:CDS 30.0%
!!! ATTTTGAGATAAAGGTAGTG+AGG + tig0032542:20802-20821 Msa1449390:CDS 30.0%
!!! ATGGGAATAGTTTTGGATAT+AGG + tig0032542:20898-20917 Msa1449390:CDS 30.0%
!!! TGGGAATAGTTTTGGATATA+GGG + tig0032542:20899-20918 Msa1449390:CDS 30.0%
TTTGGATATAGGGATATTGA+TGG + tig0032542:20909-20928 Msa1449390:CDS 30.0%
TTGGATATAGGGATATTGAT+GGG + tig0032542:20910-20929 Msa1449390:CDS 30.0%
! TAAGATTCATAAGGCTTTGA+GGG + tig0032542:20935-20954 Msa1449390:CDS 30.0%
CGAAAAATCAGAATTTGGTT+TGG + tig0032542:21039-21058 Msa1449390:CDS 30.0%
!! CAGAATTTGGTTTGGTATAA+AGG + tig0032542:21047-21066 Msa1449390:CDS 30.0%
ATAGTTCATTATTTAGGGGT+GGG + tig0032542:21326-21345 Msa1449390:intron 30.0%
ACGTATATATGGACTTCATA+GGG - tig0032542:21451-21470 None:intergenic 30.0%
TACGTATATATGGACTTCAT+AGG - tig0032542:21452-21471 None:intergenic 30.0%
TTCCAACTCTTACGTATATA+TGG - tig0032542:21462-21481 None:intergenic 30.0%
! GTAACTGGATATTTTCTAGA+TGG - tig0032542:21622-21641 None:intergenic 30.0%
ATTAAACATGAGGTGTATCT+CGG - tig0032542:21698-21717 None:intergenic 30.0%
ATATATTATCGGTGAAGAAC+AGG - tig0032542:21763-21782 None:intergenic 30.0%
!!! GTAAGGTTTATTTTTTGTGG+GGG - tig0032542:21918-21937 None:intergenic 30.0%
!!! GGTAAGGTTTATTTTTTGTG+GGG - tig0032542:21919-21938 None:intergenic 30.0%
!!! GTGGTAAGGTTTATTTTTTG+TGG - tig0032542:21921-21940 None:intergenic 30.0%
AACTTCAGAAAAACAAGAGA+TGG - tig0032542:22243-22262 None:intergenic 30.0%
! AGTATGGATTTTTCTTCTGA+TGG - tig0032542:22335-22354 None:intergenic 30.0%
AGAAGAAAAATCCATACTGT+TGG + tig0032542:22337-22356 Msa1449390:intron 30.0%
GAAGAAAAATCCATACTGTT+GGG + tig0032542:22338-22357 Msa1449390:intron 30.0%
!! GTCTTTTATTTGTATTCTGC+CGG - tig0032542:22365-22384 None:intergenic 30.0%
CAAAACATATTTAGCAAGAC+TGG + tig0032542:22983-23002 Msa1449390:intron 30.0%
!! TATATTGATTGGCTTAGTCA+TGG + tig0032542:23182-23201 Msa1449390:intron 30.0%
!! ATATTGATTGGCTTAGTCAT+GGG + tig0032542:23183-23202 Msa1449390:intron 30.0%
TGTCTCACTTATCGAAAAAT+GGG - tig0032542:23213-23232 None:intergenic 30.0%
ATGTCTCACTTATCGAAAAA+TGG - tig0032542:23214-23233 None:intergenic 30.0%
ACCACTAATACAATATGCAA+AGG + tig0032542:23286-23305 Msa1449390:intron 30.0%
ACCTTTGCATATTGTATTAG+TGG - tig0032542:23290-23309 None:intergenic 30.0%
CTAAGACTAAGATAGAAATG+TGG - tig0032542:23357-23376 None:intergenic 30.0%
! CACATTTCTATCTTAGTCTT+AGG + tig0032542:23355-23374 Msa1449390:intron 30.0%
! CGAGTTTCTGAAAAAGATTA+AGG - tig0032542:23400-23419 None:intergenic 30.0%
TTCAGATTAAGGAACTCAAT+GGG - tig0032542:23519-23538 None:intergenic 30.0%
ATTCAGATTAAGGAACTCAA+TGG - tig0032542:23520-23539 None:intergenic 30.0%
AAACAACATTTCAATCGTAG+AGG - tig0032542:23872-23891 None:intergenic 30.0%
CAAGGAATATAGTTGTTCAA+TGG - tig0032542:23899-23918 None:intergenic 30.0%
CAAAATACAACTTACAGCAA+AGG - tig0032542:23945-23964 None:intergenic 30.0%
TTCAAAAATGGTGTATGTCA+AGG + tig0032542:24032-24051 Msa1449390:CDS 30.0%
! TGCACAGTTAAGTTCAATTT+TGG + tig0032542:24131-24150 Msa1449390:CDS 30.0%
!! AGTTAAGTTCAATTTTGGTC+CGG + tig0032542:24136-24155 Msa1449390:CDS 30.0%
! TGATTTTCAAAACCATGATG+AGG - tig0032542:24224-24243 None:intergenic 30.0%
TTGACTGAGAAGAAATCTAA+TGG + tig0032542:24260-24279 Msa1449390:CDS 30.0%
TCATACGAGCAAAAATCAAA+TGG + tig0032542:24395-24414 Msa1449390:CDS 30.0%
TTTACAAATGACTAGGTTAG+TGG + tig0032542:24623-24642 Msa1449390:three_prime_UTR 30.0%
TTAGTGGTGTAAACTTATGA+AGG + tig0032542:24639-24658 Msa1449390:three_prime_UTR 30.0%
TAGTGGTGTAAACTTATGAA+GGG + tig0032542:24640-24659 Msa1449390:three_prime_UTR 30.0%
TGAAATATAAGAATTTCCCC+TGG - tig0032542:24689-24708 None:intergenic 30.0%
GGGAAATTCTTATATTTCAG+AGG + tig0032542:24690-24709 Msa1449390:three_prime_UTR 30.0%
TTATATTTCAGAGGTCTACT+AGG + tig0032542:24699-24718 Msa1449390:three_prime_UTR 30.0%
GAGATTCAATCTGAAAAGAG+AGG - tig0032542:20000-20019 None:intergenic 35.0%
!!! ATTAGGGTTTTGAGTGCAAT+CGG - tig0032542:20024-20043 None:intergenic 35.0%
ACTCAAAACCCTAATTTCCA+TGG + tig0032542:20029-20048 Msa1449390:exon 35.0%
GAAGTGTATCCATGGAAATT+AGG - tig0032542:20041-20060 None:intergenic 35.0%
TTTCGGTGAATTCTTCTGTT+CGG - tig0032542:20295-20314 None:intergenic 35.0%
! GGTTGTTCTCTTTTCTGTTT+CGG - tig0032542:20312-20331 None:intergenic 35.0%
! AAATTGGTTCTTCCTTGACA+GGG - tig0032542:20392-20411 None:intergenic 35.0%
AACAATAACAACCACACGAA+CGG + tig0032542:20582-20601 Msa1449390:CDS 35.0%
! CAAAAGGGTATAGAATGGTT+AGG + tig0032542:20748-20767 Msa1449390:CDS 35.0%
AGATAAAGGTAGTGAGGTTA+GGG + tig0032542:20808-20827 Msa1449390:CDS 35.0%
TGATGGGAGTAAGATTCATA+AGG + tig0032542:20926-20945 Msa1449390:CDS 35.0%
GTAAGATTCATAAGGCTTTG+AGG + tig0032542:20934-20953 Msa1449390:CDS 35.0%
TATGGTGAAGGTGATGTTAT+TGG + tig0032542:20978-20997 Msa1449390:CDS 35.0%
ATGGTGAAGGTGATGTTATT+GGG + tig0032542:20979-20998 Msa1449390:CDS 35.0%
TGCTCCGAAAAATCAGAATT+TGG + tig0032542:21034-21053 Msa1449390:CDS 35.0%
!! TGGTTTGGTATAAAGGACAA+CGG + tig0032542:21054-21073 Msa1449390:CDS 35.0%
TGCTTATAATCCAGATGCTA+AGG + tig0032542:21079-21098 Msa1449390:CDS 35.0%
GATAGTTCATTATTTAGGGG+TGG + tig0032542:21325-21344 Msa1449390:intron 35.0%
TAGTTCATTATTTAGGGGTG+GGG + tig0032542:21327-21346 Msa1449390:intron 35.0%
CATAACCAAGTTCACAATCA+AGG - tig0032542:21389-21408 None:intergenic 35.0%
CTTGATTGTGAACTTGGTTA+TGG + tig0032542:21387-21406 Msa1449390:intron 35.0%
GTCCATATATACGTAAGAGT+TGG + tig0032542:21457-21476 Msa1449390:intron 35.0%
CGTAAGAGTTGGAAATGTAT+TGG + tig0032542:21468-21487 Msa1449390:intron 35.0%
ACTTGTACTACGAAACATTC+TGG + tig0032542:21526-21545 Msa1449390:intron 35.0%
AACAGGACAAACTGGATTTA+AGG - tig0032542:21746-21765 None:intergenic 35.0%
ATCGGTCCTTTCACAAAAAA+CGG - tig0032542:21832-21851 None:intergenic 35.0%
TGCTATAGACATTGTTCCAT+CGG - tig0032542:21850-21869 None:intergenic 35.0%
AACAATGTCTATAGCAGTGT+AGG + tig0032542:21854-21873 Msa1449390:intron 35.0%
!! GTCTATTTTGCTATGCAATG+TGG - tig0032542:21955-21974 None:intergenic 35.0%
! TATACAATAGAGGCACGAAA+TGG - tig0032542:22273-22292 None:intergenic 35.0%
! TGAAAACACCATCTAAAGCT+TGG + tig0032542:23015-23034 Msa1449390:intron 35.0%
ATTCACTATTGGAAGTTAGG+TGG + tig0032542:23548-23567 Msa1449390:intron 35.0%
CTGCACAGAAAAGAGAATAT+TGG - tig0032542:23995-24014 None:intergenic 35.0%
! CAATATTCTCTTTTCTGTGC+AGG + tig0032542:23993-24012 Msa1449390:intron 35.0%
!!! AACTGTGCAGTTTTGTTCAT+GGG - tig0032542:24120-24139 None:intergenic 35.0%
!!! TAACTGTGCAGTTTTGTTCA+TGG - tig0032542:24121-24140 None:intergenic 35.0%
TCCCTCATGATTTCAATGAA+CGG + tig0032542:24171-24190 Msa1449390:CDS 35.0%
TTGACTGTGAAGAAATCAAC+AGG + tig0032542:24314-24333 Msa1449390:CDS 35.0%
TCGACTGAGAAGAAATCAAA+TGG + tig0032542:24341-24360 Msa1449390:CDS 35.0%
TCGACTGAGAAGAAATCAAA+TGG + tig0032542:24341-24360 Msa1449390:CDS 35.0%
AAAATCAAATGGAGAGTCGA+AGG + tig0032542:24406-24425 Msa1449390:CDS 35.0%
TGAGAAGAAATCAGATGAAG+AGG + tig0032542:24481-24500 Msa1449390:CDS 35.0%
TCTGTGCAGCAAAAAATACT+TGG - tig0032542:24552-24571 None:intergenic 35.0%
!!! AGTATTTTTTGCTGCACAGA+TGG + tig0032542:24552-24571 Msa1449390:three_prime_UTR 35.0%
AGTGGTGTAAACTTATGAAG+GGG + tig0032542:24641-24660 Msa1449390:three_prime_UTR 35.0%
ACTCTTCCTTCTTCTCTCAT+CGG + tig0032542:19968-19987 Msa1449390:five_prime_UTR 40.0%
TTCCTCTTCGTCTTTGTATG+TGG - tig0032542:20067-20086 None:intergenic 40.0%
CGAAGAGGAAGATGAAGAAA+TGG + tig0032542:20077-20096 Msa1449390:CDS 40.0%
TAATTCCATATCAACCACGG+TGG - tig0032542:20184-20203 None:intergenic 40.0%
GGTTCTTCTTCATCTTCATC+AGG - tig0032542:20333-20352 None:intergenic 40.0%
GAAAGTTGCTTCTGCTTCTT+CGG - tig0032542:20360-20379 None:intergenic 40.0%
! GAAATTGGTTCTTCCTTGAC+AGG - tig0032542:20393-20412 None:intergenic 40.0%
! GTTCGTGTGGTTGTTATTGT+TGG - tig0032542:20583-20602 None:intergenic 40.0%
TTCTGATAACACCAGTACAG+AGG + tig0032542:20619-20638 Msa1449390:CDS 40.0%
TGACAAAAGTGACGATACAC+CGG + tig0032542:20647-20666 Msa1449390:CDS 40.0%
!! AAGTTGAGTTGAGTGAGGAT+AGG + tig0032542:20709-20728 Msa1449390:CDS 40.0%
! GAGCACAAAAGGGTATAGAA+TGG + tig0032542:20743-20762 Msa1449390:CDS 40.0%
GAGATAAAGGTAGTGAGGTT+AGG + tig0032542:20807-20826 Msa1449390:CDS 40.0%
GATAAAGGTAGTGAGGTTAG+GGG + tig0032542:20809-20828 Msa1449390:CDS 40.0%
!! GGGTATGATGGGAATAGTTT+TGG + tig0032542:20891-20910 Msa1449390:CDS 40.0%
!! AAGGCTTTGAGGGAGAATTA+TGG + tig0032542:20945-20964 Msa1449390:CDS 40.0%
!! AGGCTTTGAGGGAGAATTAT+GGG + tig0032542:20946-20965 Msa1449390:CDS 40.0%
AATTATGGGGATGAGGGTTA+TGG + tig0032542:20960-20979 Msa1449390:CDS 40.0%
TAACCAGGTACAACTTTAGG+TGG - tig0032542:21110-21129 None:intergenic 40.0%
GACTAACCAGGTACAACTTT+AGG - tig0032542:21113-21132 None:intergenic 40.0%
AGCAGATTTGAAGACTAACC+AGG - tig0032542:21125-21144 None:intergenic 40.0%
TAGCTCCTTGATTGTGAACT+TGG + tig0032542:21381-21400 Msa1449390:intron 40.0%
GTACAAGTGTTTGTAGTGTC+TGG - tig0032542:21514-21533 None:intergenic 40.0%
!!! GTTTTTTGTGAAAGGACCGA+TGG + tig0032542:21831-21850 Msa1449390:intron 40.0%
!!! TTTATTTTTTGTGGGGGTGG+GGG - tig0032542:21912-21931 None:intergenic 40.0%
!!! GTTTATTTTTTGTGGGGGTG+GGG - tig0032542:21913-21932 None:intergenic 40.0%
!!! GGTTTATTTTTTGTGGGGGT+GGG - tig0032542:21914-21933 None:intergenic 40.0%
!!! AGGTTTATTTTTTGTGGGGG+TGG - tig0032542:21915-21934 None:intergenic 40.0%
ATGCAATGTGGTTCAGGAAT+GGG - tig0032542:21943-21962 None:intergenic 40.0%
TATGCAATGTGGTTCAGGAA+TGG - tig0032542:21944-21963 None:intergenic 40.0%
! TTTGCTATGCAATGTGGTTC+AGG - tig0032542:21949-21968 None:intergenic 40.0%
ACAGAGCATGAAAGGAACTT+AGG - tig0032542:22087-22106 None:intergenic 40.0%
ACAAGAGAACAGAGCATGAA+AGG - tig0032542:22095-22114 None:intergenic 40.0%
CAGCAACTCAGATCAAAAAC+AGG - tig0032542:22131-22150 None:intergenic 40.0%
TTTGCCAAGAAAGGAACTTG+GGG - tig0032542:22173-22192 None:intergenic 40.0%
CTTTGCCAAGAAAGGAACTT+GGG - tig0032542:22174-22193 None:intergenic 40.0%
AAAATCCATACTGTTGGGAC+CGG + tig0032542:22343-22362 Msa1449390:intron 40.0%
TGCAAGTTTCTCGGATGTAA+GGG - tig0032542:22919-22938 None:intergenic 40.0%
TTGCAAGTTTCTCGGATGTA+AGG - tig0032542:22920-22939 None:intergenic 40.0%
CATCTCTGTTGCAAGTTTCT+CGG - tig0032542:22928-22947 None:intergenic 40.0%
! GAGATAGAAGTGTGACCAAA+AGG + tig0032542:22947-22966 Msa1449390:intron 40.0%
CATATTTAGCAAGACTGGGT+AGG + tig0032542:22988-23007 Msa1449390:intron 40.0%
! TAAAGCCTCCCATGCATTTT+TGG + tig0032542:23235-23254 Msa1449390:intron 40.0%
ACATCAATAGCGTGGAAAAG+TGG + tig0032542:23599-23618 Msa1449390:intron 40.0%
TAACAGTTGTTCTGTACGCA+AGG - tig0032542:23917-23936 None:intergenic 40.0%
GTAGCTTTCAAAGACCTCTA+TGG + tig0032542:24056-24075 Msa1449390:CDS 40.0%
AGAGTATACATTGAAGCAGC+AGG - tig0032542:24095-24114 None:intergenic 40.0%
!!! ACTGTGCAGTTTTGTTCATG+GGG - tig0032542:24119-24138 None:intergenic 40.0%
TGAGGGAAAAATTCGAAGTC+CGG - tig0032542:24158-24177 None:intergenic 40.0%
GCCGTTCATTGAAATCATGA+GGG - tig0032542:24175-24194 None:intergenic 40.0%
TGATGAGGAACTTCAACCAT+TGG - tig0032542:24209-24228 None:intergenic 40.0%
ATGGTTGAAGTTCCTCATCA+TGG + tig0032542:24209-24228 Msa1449390:CDS 40.0%
GGAGATGAAATCAGATGAAG+AGG + tig0032542:24427-24446 Msa1449390:CDS 40.0%
!!! TTTTTTGCTGCACAGATGGA+TGG + tig0032542:24556-24575 Msa1449390:three_prime_UTR 40.0%
! TTTTTGCTGCACAGATGGAT+GGG + tig0032542:24557-24576 Msa1449390:three_prime_UTR 40.0%
! GGATTGTCCTTTTCACCTTT+TGG + tig0032542:24741-24760 Msa1449390:three_prime_UTR 40.0%
TGTGGCTTGAAGTGTATCCA+TGG - tig0032542:20049-20068 None:intergenic 45.0%
AGCCACATACAAAGACGAAG+AGG + tig0032542:20062-20081 Msa1449390:CDS 45.0%
GGAAGAACCAATTTCGTTGC+CGG + tig0032542:20398-20417 Msa1449390:CDS 45.0%
TTAACCTCCGGCAACGAAAT+TGG - tig0032542:20408-20427 None:intergenic 45.0%
AATAACAACCACACGAACGG+TGG + tig0032542:20585-20604 Msa1449390:CDS 45.0%
TTGTCAGGAAACCTCTGTAC+TGG - tig0032542:20633-20652 None:intergenic 45.0%
!!! GGTGTATCGTCACTTTTGTC+AGG - tig0032542:20648-20667 None:intergenic 45.0%
!! GGAGAAAGTTGAGTTGAGTG+AGG + tig0032542:20704-20723 Msa1449390:CDS 45.0%
AGTGAGGATAGGTTAAGTGC+AGG + tig0032542:20720-20739 Msa1449390:CDS 45.0%
GTGAGGATAGGTTAAGTGCA+GGG + tig0032542:20721-20740 Msa1449390:CDS 45.0%
! TTAAGTGCAGGGAGCACAAA+AGG + tig0032542:20732-20751 Msa1449390:CDS 45.0%
! TAAGTGCAGGGAGCACAAAA+GGG + tig0032542:20733-20752 Msa1449390:CDS 45.0%
AGAATGGTTAGGGCAACAAG+AGG + tig0032542:20759-20778 Msa1449390:CDS 45.0%
GAATGGTTAGGGCAACAAGA+GGG + tig0032542:20760-20779 Msa1449390:CDS 45.0%
AATGGTTAGGGCAACAAGAG+GGG + tig0032542:20761-20780 Msa1449390:CDS 45.0%
!! TTGGGTTGGACAATGGAGAA+GGG + tig0032542:20849-20868 Msa1449390:CDS 45.0%
! AATGGAGAAGGGTGATTTGC+AGG + tig0032542:20860-20879 Msa1449390:CDS 45.0%
CTATTCCCATCATACCCAAC+TGG - tig0032542:20888-20907 None:intergenic 45.0%
!! GGCTTTGAGGGAGAATTATG+GGG + tig0032542:20947-20966 Msa1449390:CDS 45.0%
AGGGAGAATTATGGGGATGA+GGG + tig0032542:20954-20973 Msa1449390:CDS 45.0%
GGAGCAAACTTATCTCCATC+AGG - tig0032542:21020-21039 None:intergenic 45.0%
GATCCACCTAAAGTTGTACC+TGG + tig0032542:21104-21123 Msa1449390:CDS 45.0%
TTCATTATTTAGGGGTGGGG+AGG + tig0032542:21330-21349 Msa1449390:intron 45.0%
TCATTATTTAGGGGTGGGGA+GGG + tig0032542:21331-21350 Msa1449390:intron 45.0%
TTCTAGATGGTGAGTTGCGT+GGG - tig0032542:21609-21628 None:intergenic 45.0%
TTTCTAGATGGTGAGTTGCG+TGG - tig0032542:21610-21629 None:intergenic 45.0%
!!! TTATTTTTTGTGGGGGTGGG+GGG - tig0032542:21911-21930 None:intergenic 45.0%
ATGTGATTGCAAGCCCTAGT+TGG - tig0032542:21988-22007 None:intergenic 45.0%
TTGCAATCACATGCATCTGC+TGG + tig0032542:21996-22015 Msa1449390:intron 45.0%
!!! TGCTGGTGTCATCTTTTCTC+TGG + tig0032542:22013-22032 Msa1449390:intron 45.0%
CTGTTCTCTTGTGCATTTGC+TGG + tig0032542:22103-22122 Msa1449390:intron 45.0%
GCTTTGCCAAGAAAGGAACT+TGG - tig0032542:22175-22194 None:intergenic 45.0%
AGCAGATGCTTTGCCAAGAA+AGG - tig0032542:22182-22201 None:intergenic 45.0%
! ATGTAAGGGGTGGAAGCTTT+TGG - tig0032542:22905-22924 None:intergenic 45.0%
GCAAGTTTCTCGGATGTAAG+GGG - tig0032542:22918-22937 None:intergenic 45.0%
!! TACGGTTGCCAAGCTTTAGA+TGG - tig0032542:23026-23045 None:intergenic 45.0%
AAAGCTTGGCAACCGTATGT+TGG + tig0032542:23029-23048 Msa1449390:intron 45.0%
AAGCTTGGCAACCGTATGTT+GGG + tig0032542:23030-23049 Msa1449390:intron 45.0%
ACCACCAGCCAAAAATGCAT+GGG - tig0032542:23246-23265 None:intergenic 45.0%
AACCACCAGCCAAAAATGCA+TGG - tig0032542:23247-23266 None:intergenic 45.0%
CATCCCAAGAACCAACTATC+CGG + tig0032542:23425-23444 Msa1449390:intron 45.0%
ATCCCAAGAACCAACTATCC+GGG + tig0032542:23426-23445 Msa1449390:intron 45.0%
GGCTTTGCCATGGTTTCAAT+TGG - tig0032542:23483-23502 None:intergenic 45.0%
TTCCCATCCCAAGCAATCAA+TGG - tig0032542:23580-23599 None:intergenic 45.0%
GCTTTCAAAGACCTCTATGG+CGG + tig0032542:24059-24078 Msa1449390:CDS 45.0%
GGCCGTTCATTGAAATCATG+AGG - tig0032542:24176-24195 None:intergenic 45.0%
!! TCAACCATTGGCTTGGGAAT+TGG - tig0032542:24197-24216 None:intergenic 45.0%
!! GGAACTTCAACCATTGGCTT+GGG - tig0032542:24203-24222 None:intergenic 45.0%
! AGGAACTTCAACCATTGGCT+TGG - tig0032542:24204-24223 None:intergenic 45.0%
GAAATCAGATGAAGAGGCGA+AGG + tig0032542:24433-24452 Msa1449390:CDS 45.0%
GCGATTCCGATGAGAGAAGA+AGG - tig0032542:19977-19996 None:intergenic 50.0%
GTTGTCGTTGTGACGGTTGA+AGG - tig0032542:20108-20127 None:intergenic 50.0%
! TGTCTCCACCGTGGTTGATA+TGG + tig0032542:20176-20195 Msa1449390:CDS 50.0%
GGAGTGGTGGTAGTAATGAG+AGG - tig0032542:20216-20235 None:intergenic 50.0%
TCCGTCCAACGACGGAAAAT+CGG + tig0032542:20233-20252 Msa1449390:CDS 50.0%
! TCCGATTTTCCGTCGTTGGA+CGG - tig0032542:20237-20256 None:intergenic 50.0%
! GAGTTCCGATTTTCCGTCGT+TGG - tig0032542:20241-20260 None:intergenic 50.0%
TGCTTCTGCTTCTTCGGAAG+CGG - tig0032542:20354-20373 None:intergenic 50.0%
TTCCTCTCTGAACCCTGTCA+AGG + tig0032542:20377-20396 Msa1449390:CDS 50.0%
TTCCTTGACAGGGTTCAGAG+AGG - tig0032542:20382-20401 None:intergenic 50.0%
AGAACCAATTTCGTTGCCGG+AGG + tig0032542:20401-20420 Msa1449390:CDS 50.0%
GCAGCAGCATTGTTAACCTC+CGG - tig0032542:20420-20439 None:intergenic 50.0%
TGCTGCTGCTGTGTCAATTC+CGG + tig0032542:20434-20453 Msa1449390:CDS 50.0%
AATTCCGGCTACAACCACAC+CGG + tig0032542:20449-20468 Msa1449390:CDS 50.0%
!! GTTGGGTTGGACAATGGAGA+AGG + tig0032542:20848-20867 Msa1449390:CDS 50.0%
! GTGATTTGCAGGCACCAGTT+GGG + tig0032542:20871-20890 Msa1449390:CDS 50.0%
AGGCACCAGTTGGGTATGAT+GGG + tig0032542:20880-20899 Msa1449390:CDS 50.0%
GAGGGAGAATTATGGGGATG+AGG + tig0032542:20953-20972 Msa1449390:CDS 50.0%
GGTGGATCTTCCTTAGCATC+TGG - tig0032542:21092-21111 None:intergenic 50.0%
TCTAGATGGTGAGTTGCGTG+GGG - tig0032542:21608-21627 None:intergenic 50.0%
CGGTGAAGAACAGGACAAAC+TGG - tig0032542:21754-21773 None:intergenic 50.0%
GGAGGGTGGGGAATATATGA+AGG - tig0032542:21890-21909 None:intergenic 50.0%
TGGTTCAGGAATGGGTGGTA+AGG - tig0032542:21935-21954 None:intergenic 50.0%
CAATGTGGTTCAGGAATGGG+TGG - tig0032542:21940-21959 None:intergenic 50.0%
AGACCCACTCTTCACCAACT+AGG + tig0032542:21971-21990 Msa1449390:intron 50.0%
GACCCACTCTTCACCAACTA+GGG + tig0032542:21972-21991 Msa1449390:intron 50.0%
!! AGCCCTAGTTGGTGAAGAGT+GGG - tig0032542:21977-21996 None:intergenic 50.0%
!! AAGCCCTAGTTGGTGAAGAG+TGG - tig0032542:21978-21997 None:intergenic 50.0%
GACTACGACATCCAGAGAAC+AGG + tig0032542:22474-22493 Msa1449390:intron 50.0%
TCTCTCTCTCTCCTGTTCTC+TGG - tig0032542:22488-22507 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + tig0032542:22497-22516 Msa1449390:intron 50.0%
AGTTTCTCGGATGTAAGGGG+TGG - tig0032542:22915-22934 None:intergenic 50.0%
AGCTTGGCAACCGTATGTTG+GGG + tig0032542:23031-23050 Msa1449390:intron 50.0%
ACCAGCCAAAAATGCATGGG+AGG - tig0032542:23243-23262 None:intergenic 50.0%
!!! TCCCATGCATTTTTGGCTGG+TGG + tig0032542:23242-23261 Msa1449390:intron 50.0%
! CGGATAGTTGGTTCTTGGGA+TGG - tig0032542:23427-23446 None:intergenic 50.0%
TCCCAAGAACCAACTATCCG+GGG + tig0032542:23427-23446 Msa1449390:intron 50.0%
! TCCCCGGATAGTTGGTTCTT+GGG - tig0032542:23431-23450 None:intergenic 50.0%
! TTCCCCGGATAGTTGGTTCT+TGG - tig0032542:23432-23451 None:intergenic 50.0%
AACCATGGCAAAGCCCTGTA+TGG + tig0032542:23488-23507 Msa1449390:intron 50.0%
TCAATGGGCCAGTCCATACA+GGG - tig0032542:23504-23523 None:intergenic 50.0%
! GTGCTCGCCATTGATTGCTT+GGG + tig0032542:23570-23589 Msa1449390:intron 50.0%
! TCGCCATTGATTGCTTGGGA+TGG + tig0032542:23574-23593 Msa1449390:intron 50.0%
! CGCCATTGATTGCTTGGGAT+GGG + tig0032542:23575-23594 Msa1449390:intron 50.0%
GGATGGGAACATCAATAGCG+TGG + tig0032542:23591-23610 Msa1449390:intron 50.0%
GATAGTAACGACCGCCATAG+AGG - tig0032542:24073-24092 None:intergenic 50.0%
ATCAACCACGGTGGAGACAG+CGG - tig0032542:20175-20194 None:intergenic 55.0%
! TTTTCCGTCGTTGGACGGAG+TGG - tig0032542:20232-20251 None:intergenic 55.0%
AGAGTCGTCGGAGGGTTCAT+CGG - tig0032542:20271-20290 None:intergenic 55.0%
CTTCTGTTCGGCAGAGTCGT+CGG - tig0032542:20283-20302 None:intergenic 55.0%
TGTCTTCTCCACCGTTCGTG+TGG - tig0032542:20596-20615 None:intergenic 55.0%
TAGGGCAACAAGAGGGGTAG+TGG + tig0032542:20767-20786 Msa1449390:CDS 55.0%
!! GCAACAAGAGGGGTAGTGGA+AGG + tig0032542:20771-20790 Msa1449390:CDS 55.0%
GTAGTGAGGTTAGGGGAGAG+TGG + tig0032542:20816-20835 Msa1449390:CDS 55.0%
TAGGGGAGAGTGGACATACG+CGG + tig0032542:20826-20845 Msa1449390:CDS 55.0%
GAGAGTGGACATACGCGGTT+GGG + tig0032542:20831-20850 Msa1449390:CDS 55.0%
!! TACGCGGTTGGGTTGGACAA+TGG + tig0032542:20842-20861 Msa1449390:CDS 55.0%
! GGTGATTTGCAGGCACCAGT+TGG + tig0032542:20870-20889 Msa1449390:CDS 55.0%
CAGGCACCAGTTGGGTATGA+TGG + tig0032542:20879-20898 Msa1449390:CDS 55.0%
GGGGATGAGGGTTATGGTGA+AGG + tig0032542:20966-20985 Msa1449390:CDS 55.0%
CGTATCTGGTGAGTGGCTTC+GGG - tig0032542:21674-21693 None:intergenic 55.0%
CCGTATCTGGTGAGTGGCTT+CGG - tig0032542:21675-21694 None:intergenic 55.0%
CCGAAGCCACTCACCAGATA+CGG + tig0032542:21672-21691 Msa1449390:intron 55.0%
AGGTGTATCTCGGCCGTATC+TGG - tig0032542:21688-21707 None:intergenic 55.0%
GCTGCCCCAAGTTCCTTTCT+TGG + tig0032542:22166-22185 Msa1449390:intron 55.0%
TTCTGCCGGTCCCAACAGTA+TGG - tig0032542:22351-22370 None:intergenic 55.0%
GCTTGGCAACCGTATGTTGG+GGG + tig0032542:23032-23051 Msa1449390:intron 55.0%
CAACCGTATGTTGGGGGTGA+GGG + tig0032542:23038-23057 Msa1449390:intron 55.0%
!!! GCCTCCCATGCATTTTTGGC+TGG + tig0032542:23239-23258 Msa1449390:intron 55.0%
GTCCATACAGGGCTTTGCCA+TGG - tig0032542:23493-23512 None:intergenic 55.0%
TGGCAAAGCCCTGTATGGAC+TGG + tig0032542:23493-23512 Msa1449390:intron 55.0%
CTCAATGGGCCAGTCCATAC+AGG - tig0032542:23505-23524 None:intergenic 55.0%
! GGTGCTCGCCATTGATTGCT+TGG + tig0032542:23569-23588 Msa1449390:intron 55.0%
ACGGCCAATTCCCAAGCCAA+TGG + tig0032542:24190-24209 Msa1449390:CDS 55.0%
GGGTGCGGTTGTCGTTGTGA+CGG - tig0032542:20115-20134 None:intergenic 60.0%
GGTGGAGGAAGCAGGTGGTT+CGG - tig0032542:20142-20161 None:intergenic 60.0%
TCAACCACGGTGGAGACAGC+GGG - tig0032542:20174-20193 None:intergenic 60.0%
ACCACCACTCCGTCCAACGA+CGG + tig0032542:20225-20244 Msa1449390:CDS 60.0%
TCGTCGGAGGGTTCATCGGA+GGG - tig0032542:20267-20286 None:intergenic 60.0%
TGTTCGGCAGAGTCGTCGGA+GGG - tig0032542:20279-20298 None:intergenic 60.0%
TTCGCCGGTGTGGTTGTAGC+CGG - tig0032542:20456-20475 None:intergenic 60.0%
GCTACAACCACACCGGCGAA+TGG + tig0032542:20456-20475 Msa1449390:CDS 60.0%
GTCGTCGCTGTTCCATTCGC+CGG - tig0032542:20471-20490 None:intergenic 60.0%
!! GAGGGGTAGTGGAAGGTGCT+TGG + tig0032542:20778-20797 Msa1449390:CDS 60.0%
GGAGAGTGGACATACGCGGT+TGG + tig0032542:20830-20849 Msa1449390:CDS 60.0%
GTGGACATACGCGGTTGGGT+TGG + tig0032542:20835-20854 Msa1449390:CDS 60.0%
ATTTAGGGGTGGGGAGGGTG+AGG + tig0032542:21336-21355 Msa1449390:intron 60.0%
TCTCGGCCGTATCTGGTGAG+TGG - tig0032542:21681-21700 None:intergenic 60.0%
! TTTTTGTGGGGGTGGGGGGA+GGG - tig0032542:21907-21926 None:intergenic 60.0%
!!! TTTTTTGTGGGGGTGGGGGG+AGG - tig0032542:21908-21927 None:intergenic 60.0%
GCAACCGTATGTTGGGGGTG+AGG + tig0032542:23037-23056 Msa1449390:intron 60.0%
! GAGGGCGCAATTGGCAGATG+AGG + tig0032542:23056-23075 Msa1449390:intron 60.0%
!! GGGTTGGTTCCCCGGATAGT+TGG - tig0032542:23439-23458 None:intergenic 60.0%
GGGGGGGCCAATTGAAACCA+TGG + tig0032542:23473-23492 Msa1449390:intron 60.0%
! GAAGCAGGTGGTTCGGCGGA+GGG - tig0032542:20135-20154 None:intergenic 65.0%
! GGAGGAAGCAGGTGGTTCGG+CGG - tig0032542:20139-20158 None:intergenic 65.0%
TCGACGGTGGAGGAAGCAGG+TGG - tig0032542:20147-20166 None:intergenic 65.0%
GGTTCGACGGTGGAGGAAGC+AGG - tig0032542:20150-20169 None:intergenic 65.0%
GGAGACAGCGGGTGGTTCGA+CGG - tig0032542:20163-20182 None:intergenic 65.0%
TCCGTCGTTGGACGGAGTGG+TGG - tig0032542:20229-20248 None:intergenic 65.0%
GTCGTCGGAGGGTTCATCGG+AGG - tig0032542:20268-20287 None:intergenic 65.0%
CTGTTCGGCAGAGTCGTCGG+AGG - tig0032542:20280-20299 None:intergenic 65.0%
CGCTGTTCCATTCGCCGGTG+TGG - tig0032542:20466-20485 None:intergenic 65.0%
GGGTGGGGAGGGTGAGGATT+TGG + tig0032542:21342-21361 Msa1449390:intron 65.0%
GCGCCCTCACCCCCAACATA+CGG - tig0032542:23044-23063 None:intergenic 65.0%
! GTTGGGGGTGAGGGCGCAAT+TGG + tig0032542:23047-23066 Msa1449390:intron 65.0%
CCAACCCCGCCATCCACTAG+CGG + tig0032542:23452-23471 Msa1449390:intron 65.0%
CAACCCCGCCATCCACTAGC+GGG + tig0032542:23453-23472 Msa1449390:intron 65.0%
AACCCCGCCATCCACTAGCG+GGG + tig0032542:23454-23473 Msa1449390:intron 65.0%
TCAATTGGCCCCCCCGCTAG+TGG - tig0032542:23468-23487 None:intergenic 65.0%
! AGGTGGTTCGGCGGAGGGTG+CGG - tig0032542:20130-20149 None:intergenic 70.0%
! GGAAGCAGGTGGTTCGGCGG+AGG - tig0032542:20136-20155 None:intergenic 70.0%
AGCGGGTGGTTCGACGGTGG+AGG - tig0032542:20157-20176 None:intergenic 70.0%
GACAGCGGGTGGTTCGACGG+TGG - tig0032542:20160-20179 None:intergenic 70.0%
ACCACCCGCTGTCTCCACCG+TGG + tig0032542:20167-20186 Msa1449390:CDS 70.0%
ACCACGGTGGAGACAGCGGG+TGG - tig0032542:20171-20190 None:intergenic 70.0%
!! GGATGGCGGGGTTGGTTCCC+CGG - tig0032542:23447-23466 None:intergenic 70.0%
!! CCGCTAGTGGATGGCGGGGT+TGG - tig0032542:23455-23474 None:intergenic 70.0%
ACCCCGCCATCCACTAGCGG+GGG + tig0032542:23455-23474 Msa1449390:intron 70.0%
TTGGCCCCCCCGCTAGTGGA+TGG - tig0032542:23464-23483 None:intergenic 70.0%
TGTGGGGGTGGGGGGAGGGT+GGG - tig0032542:21903-21922 None:intergenic 75.0%
TTGTGGGGGTGGGGGGAGGG+TGG - tig0032542:21904-21923 None:intergenic 75.0%
! CCCCCCGCTAGTGGATGGCG+GGG - tig0032542:23459-23478 None:intergenic 75.0%
CCCCGCCATCCACTAGCGGG+GGG + tig0032542:23456-23475 Msa1449390:intron 75.0%
! CCCCCCCGCTAGTGGATGGC+GGG - tig0032542:23460-23479 None:intergenic 75.0%
CCCGCCATCCACTAGCGGGG+GGG + tig0032542:23457-23476 Msa1449390:intron 75.0%
! GCCCCCCCGCTAGTGGATGG+CGG - tig0032542:23461-23480 None:intergenic 75.0%
! GTGGGGGTGGGGGGAGGGTG+GGG - tig0032542:21902-21921 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0032542 gene 19951 24794 19951 ID=Msa1449390;Name=Msa1449390
tig0032542 mRNA 19951 24794 19951 ID=Msa1449390-mRNA-1;Parent=Msa1449390;Name=Msa1449390-mRNA-1;_AED=0.00;_eAED=0.00;_QI=97|1|1|1|1|1|2|271|528
tig0032542 exon 19951 21125 19951 ID=Msa1449390-mRNA-1:exon:16912;Parent=Msa1449390-mRNA-1
tig0032542 exon 24015 24794 24015 ID=Msa1449390-mRNA-1:exon:16913;Parent=Msa1449390-mRNA-1
tig0032542 five_prime_UTR 19951 20047 19951 ID=Msa1449390-mRNA-1:five_prime_utr;Parent=Msa1449390-mRNA-1
tig0032542 CDS 20048 21125 20048 ID=Msa1449390-mRNA-1:cds;Parent=Msa1449390-mRNA-1
tig0032542 CDS 24015 24523 24015 ID=Msa1449390-mRNA-1:cds;Parent=Msa1449390-mRNA-1
tig0032542 three_prime_UTR 24524 24794 24524 ID=Msa1449390-mRNA-1:three_prime_utr;Parent=Msa1449390-mRNA-1
Gene Sequence

>Msa1449390

ATGGATACACTTCAAGCCACATACAAAGACGAAGAGGAAGATGAAGAAATGGCACAACCTTCAACCGTCACAACGACAACCGCACCCTCCGCCGAACCACCTGCTTCCTCCACCGTCGAACCACCCGCTGTCTCCACCGTGGTTGATATGGAATTAACAGACGCGCCTCTCATTACTACCACCACTCCGTCCAACGACGGAAAATCGGAACTCGATCCCTCCGATGAACCCTCCGACGACTCTGCCGAACAGAAGAATTCACCGAAACAGAAAAGAGAACAACCTGATGAAGATGAAGAAGAACCGCTTCCGAAGAAGCAGAAGCAACTTTCCTCTCTGAACCCTGTCAAGGAAGAACCAATTTCGTTGCCGGAGGTTAACAATGCTGCTGCTGCTGTGTCAATTCCGGCTACAACCACACCGGCGAATGGAACAGCGACGACGAAGAAAACGAAGAAAAAGAATAACAATGTATGGGCAACAAAATCGAAGAAAAAGACGAAGAAAAACAAAAACAACAACAACGGCAACACCAACAATAACAACCACACGAACGGTGGAGAAGACAGTGTTCTGATAACACCAGTACAGAGGTTTCCTGACAAAAGTGACGATACACCGGAGATGAAGATATGTTTATCGAAAGTTTACAAAGCGGAGAAAGTTGAGTTGAGTGAGGATAGGTTAAGTGCAGGGAGCACAAAAGGGTATAGAATGGTTAGGGCAACAAGAGGGGTAGTGGAAGGTGCTTGGTATTTTGAGATAAAGGTAGTGAGGTTAGGGGAGAGTGGACATACGCGGTTGGGTTGGACAATGGAGAAGGGTGATTTGCAGGCACCAGTTGGGTATGATGGGAATAGTTTTGGATATAGGGATATTGATGGGAGTAAGATTCATAAGGCTTTGAGGGAGAATTATGGGGATGAGGGTTATGGTGAAGGTGATGTTATTGGGTTTTATATTAATTTGCCTGATGGAGATAAGTTTGCTCCGAAAAATCAGAATTTGGTTTGGTATAAAGGACAACGGTATGCTTATAATCCAGATGCTAAGGAAGATCCACCTAAAGTTGTACCTGGAAGTGAGATATCTTTCTTCAAAAATGGTGTATGTCAAGGTGTAGCTTTCAAAGACCTCTATGGCGGTCGTTACTATCCTGCTGCTTCAATGTATACTCTTCCCCATGAACAAAACTGCACAGTTAAGTTCAATTTTGGTCCGGACTTCGAATTTTTCCCTCATGATTTCAATGAACGGCCAATTCCCAAGCCAATGGTTGAAGTTCCTCATCATGGTTTTGAAAATCAAGTTGAAAATGGGGCGTTGACTGAGAAGAAATCTAATGGAGAGTTGAATGAGAGTAAATCAAATGGAGAGTTGACTGTGAAGAAATCAACAGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCATACGAGCAAAAATCAAATGGAGAGTCGAAGGAGATGAAATCAGATGAAGAGGCGAAGGAGAAGAAATCAGATGAAGAGTTGAATGAGAAGAAATCAGATGAAGAGGCAGAAGAGAAGAAATCTTAA
Protein sequence

>Msa1449390

MDTLQATYKDEEEDEEMAQPSTVTTTTAPSAEPPASSTVEPPAVSTVVDMELTDAPLITTTTPSNDGKSELDPSDEPSDDSAEQKNSPKQKREQPDEDEEEPLPKKQKQLSSLNPVKEEPISLPEVNNAAAAVSIPATTTPANGTATTKKTKKKNNNVWATKSKKKTKKNKNNNNGNTNNNNHTNGGEDSVLITPVQRFPDKSDDTPEMKICLSKVYKAEKVELSEDRLSAGSTKGYRMVRATRGVVEGAWYFEIKVVRLGESGHTRLGWTMEKGDLQAPVGYDGNSFGYRDIDGSKIHKALRENYGDEGYGEGDVIGFYINLPDGDKFAPKNQNLVWYKGQRYAYNPDAKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPHEQNCTVKFNFGPDFEFFPHDFNERPIPKPMVEVPHHGFENQVENGALTEKKSNGELNESKSNGELTVKKSTGESTEKKSNGESTEKKSNGESYEQKSNGESKEMKSDEEAKEKKSDEELNEKKSDEEAEEKKS*