AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0873860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873860 MtrunA17_Chr6g0454711 95.012 1203 57 2 1 1200 1 1203 0.0 2143
Msa0873860 MtrunA17_Chr7g0220961 39.004 1205 630 23 54 1200 20 1177 0.0 659
Msa0873860 MtrunA17_Chr7g0274701 62.030 266 62 7 802 1060 8 241 6.10e-86 279
Msa0873860 MtrunA17_Chr4g0054401 29.052 833 549 6 42 842 6 828 4.82e-82 291
Msa0873860 MtrunA17_Chr6g0454681 87.143 140 16 1 1063 1200 22 161 5.09e-65 217
Msa0873860 MtrunA17_Chr1g0184641 63.889 144 21 3 924 1060 1 120 1.67e-44 157
Msa0873860 MtrunA17_Chr1g0184651 46.667 180 50 6 341 491 100 262 1.01e-21 98.2
Msa0873860 MtrunA17_Chr1g0184651 62.500 88 25 4 802 889 257 336 1.42e-19 92.0
Msa0873860 MtrunA17_Chr5g0421221 92.857 42 3 0 108 149 1 42 2.74e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0873860 AT1G13220.3 40.129 1089 567 20 1 1069 1 1024 0.0 622
Msa0873860 AT1G67230.1 37.184 1186 642 21 45 1200 20 1132 0.0 610
Msa0873860 AT1G13220.2 39.907 1075 563 19 13 1069 2 1011 0.0 609
Msa0873860 AT1G68790.1 37.621 1236 584 18 1 1200 1 1085 0.0 608
Msa0873860 AT1G13220.1 49.482 386 177 6 1 373 1 381 2.55e-96 313
Msa0873860 AT5G65770.1 28.158 863 571 7 1 842 1 835 9.18e-79 281
Msa0873860 AT5G65770.3 28.158 863 571 7 1 842 1 835 9.18e-79 281
Msa0873860 AT5G65780.2 27.899 871 571 8 1 842 1 843 2.88e-75 271
Msa0873860 AT5G65770.2 27.528 890 569 9 1 842 1 862 6.17e-74 267

Find 277 sgRNAs with CRISPR-Local

Find 592 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACGTTCTTTCTTTACTTTC+TGG 0.120358 6_1:+9467075 None:intergenic
TTGGGTTCTTTGACTGATTC+TGG 0.169904 6_1:-9471756 Msa0873860:CDS
AGATATCAAACACTCGATTT+AGG 0.174384 6_1:+9471964 None:intergenic
TTTGCTCATCAAGAAGTTTC+TGG 0.203519 6_1:+9468173 None:intergenic
TGGCTACTCTCCTATTTAAA+AGG 0.236080 6_1:+9464125 None:intergenic
AGTAGCCATAATCTAATCTT+TGG 0.256657 6_1:-9464110 Msa0873860:three_prime_UTR
TTTGATCTCCACAGACTTTA+CGG 0.257512 6_1:+9464524 None:intergenic
TCTCAACAAGTGCGAGAAAA+TGG 0.273616 6_1:+9467030 None:intergenic
TGGAAGAGGTTTAGAGAAGT+TGG 0.277398 6_1:-9471696 Msa0873860:CDS
GATATCAAACACTCGATTTA+GGG 0.279994 6_1:+9471965 None:intergenic
GGAAAGAGAGAGAAAATTTC+AGG 0.282006 6_1:-9467285 Msa0873860:CDS
ACTATCGGTCCTTCTATATT+AGG 0.297956 6_1:+9466684 None:intergenic
AGTGATGGTAGGCAAAATTT+TGG 0.303773 6_1:-9468992 Msa0873860:CDS
CATGTAGCTGTGTTCATCTA+TGG 0.309600 6_1:+9466551 None:intergenic
CCCCTCTCTGGCAATGTTAT+CGG 0.310782 6_1:+9466593 None:intergenic
AAGGACAATGTTATCGCTTC+TGG 0.315795 6_1:-9466885 Msa0873860:CDS
GTCTTTGTCGACCAACCTTT+GGG 0.317806 6_1:+9466484 None:intergenic
TTGCTTTATCTAGCTTTGTA+TGG 0.318702 6_1:+9469381 None:intergenic
TTAACCCAAAGATTAGATTA+TGG 0.339623 6_1:+9464105 None:intergenic
TCAGCTACCACTGCTACTTC+AGG 0.340563 6_1:+9464585 None:intergenic
CAAACCATTCTGGATCTAAA+TGG 0.344630 6_1:-9466860 Msa0873860:CDS
GGTCTTTGTCGACCAACCTT+TGG 0.346536 6_1:+9466483 None:intergenic
ACCTCCTCCTCCGCCGCCGT+TGG 0.349947 6_1:-9471775 Msa0873860:CDS
TAGCAGCAAGGAGGAGGCCT+TGG 0.353756 6_1:-9468074 Msa0873860:CDS
GCTCCACCCACACAAGTTAC+AGG 0.356842 6_1:-9466168 Msa0873860:CDS
GCTTGCTGATCGGAAGAGTT+TGG 0.358553 6_1:-9467864 Msa0873860:CDS
GCTTCTGGCTCAAACCATTC+TGG 0.360128 6_1:-9466870 Msa0873860:CDS
GGCTTAGGTTTGAGAAAGAA+TGG 0.365881 6_1:-9467634 Msa0873860:CDS
CTCAGTGAAGGCTGTGGTTA+AGG 0.366251 6_1:-9466424 Msa0873860:CDS
CCTGTTTACCTCAGCAAGCC+TGG 0.372253 6_1:+9469292 None:intergenic
CCTGGGAGGAAAAGCAAATC+TGG 0.372959 6_1:-9466462 Msa0873860:CDS
AGGAGGAGGCCTTGGAGTAT+AGG 0.374167 6_1:-9468066 Msa0873860:CDS
TAAGGAGGCCAAGGAGTTCC+TGG 0.375795 6_1:-9466406 Msa0873860:CDS
AGAGAAAGAATTACATGAAC+TGG 0.379629 6_1:-9468669 Msa0873860:CDS
GAACCCAACGGCGGCGGAGG+AGG 0.379813 6_1:+9471771 None:intergenic
AGGACTGTGGGGAAGTTGTC+AGG 0.383083 6_1:-9466992 Msa0873860:CDS
CCAGGCTTGCTGAGGTAAAC+AGG 0.384351 6_1:-9469292 Msa0873860:CDS
GAGAATTTAAATGCTGAACT+TGG 0.385406 6_1:-9467842 Msa0873860:CDS
GGAGAGAGATCTAGAAGTGT+TGG 0.387025 6_1:-9468921 Msa0873860:CDS
GGAGGAGGCCTTGGAGTATA+GGG 0.387491 6_1:-9468065 Msa0873860:CDS
TTGCCTCAGCCGATCGAACT+TGG 0.388572 6_1:+9470546 None:intergenic
AGAGCATTCTCGTTTGCAAT+TGG 0.391507 6_1:-9467735 Msa0873860:CDS
AGAAGCTTCTGGTGGTAAAC+AGG 0.391572 6_1:-9464625 Msa0873860:CDS
TCATTCACACCGCGTCGAAT+TGG 0.391919 6_1:-9471852 Msa0873860:CDS
GGAGCTCGAAAAGCTTGAAT+TGG 0.393903 6_1:-9467468 Msa0873860:CDS
GAAAGTGCTACACTGGAGTA+TGG 0.395439 6_1:-9464327 Msa0873860:CDS
CCTCCTCCTCCGCCGCCGTT+GGG 0.395996 6_1:-9471774 Msa0873860:CDS
GAGTTCTCAAGAGGAGATAT+AGG 0.396346 6_1:+9466909 None:intergenic
ATTGGTACTTCAAATATAGC+TGG 0.403690 6_1:-9466768 Msa0873860:CDS
CTTGAAAGATGCTGCTGAAA+AGG 0.408230 6_1:-9467228 Msa0873860:CDS
CCCAACGGCGGCGGAGGAGG+AGG 0.409818 6_1:+9471774 None:intergenic
CTTCTAGTTATGCTGAAGAT+TGG 0.410249 6_1:-9471716 Msa0873860:CDS
GAAAAGAGAGAAGCAAGATA+TGG 0.411646 6_1:-9467507 Msa0873860:CDS
TGACATTAGTGCAGAACAAC+AGG 0.416949 6_1:-9467588 Msa0873860:CDS
ATAGAATCTGTGTTAGTACT+AGG 0.419932 6_1:+9466789 None:intergenic
GCAGCAGTTTGAGCTTGAAA+TGG 0.421853 6_1:-9468128 Msa0873860:CDS
GTAGCCATAATCTAATCTTT+GGG 0.423050 6_1:-9464109 Msa0873860:three_prime_UTR
GAAAGATGATGAAGCGATGT+TGG 0.423626 6_1:-9471646 Msa0873860:CDS
GCTAGATAAAGCAAATGAAT+TGG 0.425018 6_1:-9469372 Msa0873860:CDS
TCGTGAAAGTTTGCTTCAAA+AGG 0.425567 6_1:-9469228 Msa0873860:CDS
TACGAAGTCTGAGAGAATAA+AGG 0.426804 6_1:-9467987 Msa0873860:CDS
AGGGGATAAACTGAAAATCT+TGG 0.429491 6_1:+9466809 None:intergenic
AAGATTTGAAGGAGTGGGAG+AGG 0.432343 6_1:-9469042 Msa0873860:CDS
GTGTCATCTCCTAATATAGA+AGG 0.432781 6_1:-9466693 Msa0873860:CDS
TGAGAAAGAATGGGAAGAAC+TGG 0.433982 6_1:-9467624 Msa0873860:CDS
TCGCACTTGTTGAGAAGCTC+AGG 0.436977 6_1:-9467022 Msa0873860:CDS
AACAAAGTTGAAATCATTGA+AGG 0.439065 6_1:-9467945 Msa0873860:CDS
TTCAAGAGCCTTTGTTTCGT+TGG 0.440972 6_1:+9464650 None:intergenic
AAAGAACCCAACGGCGGCGG+AGG 0.441679 6_1:+9471768 None:intergenic
GAGAAAATTTCAGGAGGAGA+TGG 0.442944 6_1:-9467276 Msa0873860:CDS
GAGAGAGCTGGAGAAGGAAA+AGG 0.444660 6_1:-9467894 Msa0873860:CDS
CCCTTTGCGAGGGCAGACTT+AGG 0.446426 6_1:+9471822 None:intergenic
TTCCAACCTTGGTTTCCCTA+TGG 0.449849 6_1:+9468029 None:intergenic
ACTTGAGGGATGAGAGGCTT+AGG 0.450821 6_1:-9467649 Msa0873860:CDS
AGAGGAAGACGAAGAGGAGG+AGG 0.451006 6_1:-9464247 Msa0873860:CDS
AGATATGAAGTTGCGAGAGC+TGG 0.455780 6_1:-9469255 Msa0873860:CDS
GAAGATCTTCTTTCCGATAC+CGG 0.455809 6_1:+9464218 None:intergenic
GCAAATTAAATGTACTGCTT+AGG 0.458093 6_1:-9464000 Msa0873860:three_prime_UTR
GCATGCACTCACACTTTCTC+TGG 0.458653 6_1:+9468631 None:intergenic
GCAGAAAGATTTAATTATGA+AGG 0.459481 6_1:-9467681 Msa0873860:CDS
GCTTAGGTTTGAGAAAGAAT+GGG 0.462231 6_1:-9467633 Msa0873860:CDS
CTCTGGCAATGTTATCGGAT+TGG 0.464030 6_1:+9466598 None:intergenic
TCAGAAAAGGAAAGAGGAGA+TGG 0.464571 6_1:-9467321 Msa0873860:CDS
TAAACAAAGGGAAGATTTGA+AGG 0.465103 6_1:-9469053 Msa0873860:CDS
GAAAATAAAAGAGAGAGAGC+TGG 0.465720 6_1:-9467906 Msa0873860:CDS
AGTACTAACACAGATTCTAT+TGG 0.467255 6_1:-9466786 Msa0873860:CDS
TCTGCACTAGAGTCGTGGTT+TGG 0.467680 6_1:+9464553 None:intergenic
GATTTCGAGACTGGAGAAAG+AGG 0.467834 6_1:-9471619 Msa0873860:intron
ATATTCAGTATTCCCCTCTC+TGG 0.468877 6_1:+9466581 None:intergenic
TCAAAGATGATCGAGTTGTA+AGG 0.470013 6_1:-9464506 Msa0873860:CDS
GCTTCAAATTCTCAGTCTCT+TGG 0.471592 6_1:+9467777 None:intergenic
GAAGAGGAGGAGGAGGATCC+CGG 0.473264 6_1:-9464237 Msa0873860:CDS
GTTGGAGAAGATTTCGAGAC+TGG 0.473700 6_1:-9471628 Msa0873860:CDS
AAATCTTGGACGTGCATTTG+CGG 0.475636 6_1:+9466823 None:intergenic
TAATTCTTTATTAAAAGAAA+AGG 0.478156 6_1:-9468879 Msa0873860:CDS
AACTGCATGATGCAGAAGCC+AGG 0.479517 6_1:-9469310 Msa0873860:CDS
CAGCTACCACTGCTACTTCA+GGG 0.480342 6_1:+9464586 None:intergenic
AGCTACATGGAAAGTTTGAC+AGG 0.482662 6_1:-9466537 Msa0873860:CDS
AGTATCCATTAGCATTAGAA+TGG 0.487033 6_1:+9463964 None:intergenic
TGTCCGTTATGACTGTCCTC+TGG 0.488777 6_1:-9464022 Msa0873860:three_prime_UTR
AAGATCTTCTTTCCGATACC+GGG 0.491246 6_1:+9464219 None:intergenic
ACTGACTGTTGAGAATCATC+TGG 0.493393 6_1:+9466507 None:intergenic
TGCTTTATCTAGCTTTGTAT+GGG 0.494171 6_1:+9469382 None:intergenic
TGAAATTCAGAAAAGGAAAG+AGG 0.498030 6_1:-9467327 Msa0873860:CDS
AAAAGAGAGAGAGCTGGAGA+AGG 0.499778 6_1:-9467900 Msa0873860:CDS
TTCTCCCCTGTAACTTGTGT+GGG 0.500234 6_1:+9466162 None:intergenic
TTTGCAATTGGAACTAAAGC+AGG 0.501696 6_1:-9467723 Msa0873860:CDS
TATGGAAGATAATTTAAAGA+AGG 0.502698 6_1:-9467489 Msa0873860:CDS
GAGAATAAAGGAGCAAGATA+AGG 0.504185 6_1:-9467975 Msa0873860:CDS
GCGAAACTCCGTTCAATCAC+CGG 0.505156 6_1:-9471924 Msa0873860:five_prime_UTR
CAGGCCATTTAGATCCAGAA+TGG 0.505160 6_1:+9466856 None:intergenic
TTGAGAATGAAATTCAGAAA+AGG 0.505300 6_1:-9467334 Msa0873860:CDS
ATCAGTATTCTATAAACAAA+GGG 0.506157 6_1:-9469065 Msa0873860:CDS
TTCAATGCGGTCCACAGAGT+TGG 0.507071 6_1:+9464350 None:intergenic
GAAGGAAGCTGAAAACTTGA+GGG 0.507185 6_1:-9467663 Msa0873860:CDS
GTCAAAGAACCCAACGGCGG+CGG 0.508443 6_1:+9471765 None:intergenic
AGGGGATCAGATTAGAGAAT+GGG 0.508665 6_1:-9467184 Msa0873860:CDS
GCTTTGTATGGGAAGAAGAC+TGG 0.510495 6_1:+9469393 None:intergenic
GGCTGTGGTTAAGGAGGCCA+AGG 0.511512 6_1:-9466415 Msa0873860:CDS
TGGCAATGTTATCGGATTGG+AGG 0.513095 6_1:+9466601 None:intergenic
GGAAGACGAAGAGGAGGAGG+AGG 0.513977 6_1:-9464244 Msa0873860:CDS
TAGAATCTGTGTTAGTACTA+GGG 0.514155 6_1:+9466790 None:intergenic
TCAGGAATTGCAAGGACTGT+GGG 0.515834 6_1:-9467004 Msa0873860:CDS
CCTAAGTCTGCCCTCGCAAA+GGG 0.517064 6_1:-9471822 Msa0873860:CDS
GAGGGGATCAGATTAGAGAA+TGG 0.517472 6_1:-9467185 Msa0873860:CDS
TGAAGAGGAAGACGAAGAGG+AGG 0.518337 6_1:-9464250 Msa0873860:CDS
AAGGGAAGATTTGAAGGAGT+GGG 0.519187 6_1:-9469047 Msa0873860:CDS
TCCGATAACATTGCCAGAGA+GGG 0.519318 6_1:-9466594 Msa0873860:CDS
TAGTGATTCAATTAAACAAG+AGG 0.520601 6_1:-9467432 Msa0873860:CDS
AGTAGCTTTCTCAGTGTGAC+TGG 0.522329 6_1:+9466323 None:intergenic
ACCCCACACTCTTTACTGTC+AGG 0.524747 6_1:+9466942 None:intergenic
TTAACATTTACATCAAACTC+AGG 0.527693 6_1:+9466738 None:intergenic
GTGATTGAACGGAGTTTCGC+CGG 0.527757 6_1:+9471927 None:intergenic
CTGGAGTATGGAGATGAAGA+TGG 0.528626 6_1:-9464315 Msa0873860:CDS
AAAGGGAAGATTTGAAGGAG+TGG 0.529560 6_1:-9469048 Msa0873860:CDS
AGTCAATGACGTTGAAAATG+AGG 0.532131 6_1:-9464286 Msa0873860:CDS
GGGAAATCGAAGTCAACCAT+AGG 0.532315 6_1:-9468045 Msa0873860:CDS
GGAGATGGAGAAAGACCTGC+AGG 0.533102 6_1:-9467306 Msa0873860:CDS
AATCAGTATTCTATAAACAA+AGG 0.533944 6_1:-9469066 Msa0873860:CDS
CAGAGAAAATCACGACCTAT+CGG 0.533991 6_1:-9471885 Msa0873860:CDS
GGAGTTTAGCAGCAAGGAGG+AGG 0.534064 6_1:-9468080 Msa0873860:CDS
CTGGTGGGCGCAAGAAGAAA+AGG 0.535720 6_1:-9466200 Msa0873860:CDS
ACTCTTGCTTCTCAATAAGA+AGG 0.535766 6_1:+9470575 None:intergenic
CTCCACCCACACAAGTTACA+GGG 0.536013 6_1:-9466167 Msa0873860:CDS
ACCTAAGTCTGCCCTCGCAA+AGG 0.536721 6_1:-9471823 Msa0873860:CDS
TTGTCATCAACATTGTCTCT+TGG 0.538284 6_1:+9464384 None:intergenic
GCAAGAACTAGCTGAAACTC+AGG 0.538381 6_1:-9470527 Msa0873860:CDS
AGAATTTAAATGCTGAACTT+GGG 0.538482 6_1:-9467841 Msa0873860:CDS
AAGGTTGGTCGACAAAGACC+TGG 0.539593 6_1:-9466480 Msa0873860:CDS
CATAGATGAACACAGCTACA+TGG 0.541220 6_1:-9466550 Msa0873860:CDS
GAGGAGGAGGATCCCGGTAT+CGG 0.541418 6_1:-9464231 Msa0873860:CDS
TTGTCCTTTGAGTTCTCAAG+AGG 0.541562 6_1:+9466900 None:intergenic
AAGCTACTGGTAACAGTACA+AGG 0.542179 6_1:-9466308 Msa0873860:CDS
GGGAGAAGCGTTACAACCTC+AGG 0.543273 6_1:-9466146 Msa0873860:CDS
TGAAGAACAGTGAAGAAGAA+AGG 0.543709 6_1:-9467532 Msa0873860:CDS
AGATGAAGAGGAAGACGAAG+AGG 0.545687 6_1:-9464253 Msa0873860:CDS
GGATTCTGCAAAGAAAATGC+TGG 0.547008 6_1:-9468699 Msa0873860:CDS
TGCTAGAACACGCTCAGTGA+AGG 0.548424 6_1:-9466436 Msa0873860:CDS
TCTCCTATTTAAAAGGAATG+AGG 0.550019 6_1:+9464132 None:intergenic
AACCATAGGGAAACCAAGGT+TGG 0.551919 6_1:-9468031 Msa0873860:CDS
CGGCGGAGGAGGAGGTTCAT+CGG 0.554762 6_1:+9471782 None:intergenic
TAACATTTACATCAAACTCA+GGG 0.555047 6_1:+9466739 None:intergenic
AGATGTAGATGCAGAAGAGA+AGG 0.555930 6_1:-9468831 Msa0873860:intron
TGAAGGAAGCTGAAAACTTG+AGG 0.556071 6_1:-9467664 Msa0873860:CDS
TTCTTATTGAGAAGCAAGAG+TGG 0.556750 6_1:-9470573 Msa0873860:CDS
CTGAAAACTTGAGGGATGAG+AGG 0.558017 6_1:-9467655 Msa0873860:CDS
TCCCCTGTAACTTGTGTGGG+TGG 0.561225 6_1:+9466165 None:intergenic
CTTCTCCCCTGTAACTTGTG+TGG 0.561940 6_1:+9466161 None:intergenic
GTTCCAAGTTCGATCGGCTG+AGG 0.564595 6_1:-9470549 Msa0873860:CDS
CAAAGATGATCGAGTTGTAA+GGG 0.564712 6_1:-9464505 Msa0873860:intron
GTTATGCTGAAGATTGGAAG+AGG 0.565774 6_1:-9471710 Msa0873860:CDS
TCTGGTGGTAAACAGGAGGC+AGG 0.569608 6_1:-9464618 Msa0873860:CDS
AGGATATGCTAAGTGATGGT+AGG 0.570303 6_1:-9469003 Msa0873860:CDS
AGATAAAGCAAATGAATTGG+TGG 0.570947 6_1:-9469369 Msa0873860:CDS
TTGCCAGAGGACAGTCATAA+CGG 0.570969 6_1:+9464019 None:intergenic
CGCTGAGGAGTTTAGCAGCA+AGG 0.571506 6_1:-9468086 Msa0873860:CDS
AAAGCAAATGAATTGGTGGA+TGG 0.572221 6_1:-9469365 Msa0873860:CDS
TACCTGACAGTAAAGAGTGT+GGG 0.574126 6_1:-9466944 Msa0873860:CDS
AATGGTTTCTTTCAGCCACA+AGG 0.575417 6_1:+9467048 None:intergenic
CATTGAAGAAAGTGCTACAC+TGG 0.575960 6_1:-9464334 Msa0873860:CDS
AGAACAACAGGAAGTTGAGA+AGG 0.576331 6_1:-9467576 Msa0873860:CDS
AGTCACACTGAGAAAGCTAC+TGG 0.580719 6_1:-9466321 Msa0873860:CDS
AGGAGAAATTGCTTGCTGAT+CGG 0.580962 6_1:-9467874 Msa0873860:CDS
TTGGTACTTCAAATATAGCT+GGG 0.581989 6_1:-9466767 Msa0873860:CDS
TGACGTTGAAAATGAGGACG+AGG 0.582743 6_1:-9464280 Msa0873860:CDS
AGATGCTGCTGAAAAGGAAT+GGG 0.583771 6_1:-9467222 Msa0873860:CDS
CTGCGGCGTGAACATTGCGC+CGG 0.585168 6_1:+9471905 None:intergenic
AAGATGCTGCTGAAAAGGAA+TGG 0.585528 6_1:-9467223 Msa0873860:CDS
TTCGATTTCCCTATACTCCA+AGG 0.586462 6_1:+9468057 None:intergenic
GGTGGATGGAATTGAAGAGA+AGG 0.587693 6_1:-9469351 Msa0873860:CDS
CTCAGGAATTGCAAGGACTG+TGG 0.588481 6_1:-9467005 Msa0873860:CDS
TGATTCTGGCGATGATGTTG+TGG 0.589665 6_1:-9471742 Msa0873860:CDS
TTCTGGCGATGATGTTGTGG+TGG 0.589684 6_1:-9471739 Msa0873860:CDS
CAAGAACGACAGATAGCAGA+TGG 0.589935 6_1:-9466654 Msa0873860:CDS
CTCAAGAGGAGATATAGGCA+AGG 0.591094 6_1:+9466914 None:intergenic
GGAAATCGAAGTCAACCATA+GGG 0.591240 6_1:-9468044 Msa0873860:CDS
CATTCAGACAGTACAACAGC+TGG 0.591601 6_1:-9466219 Msa0873860:CDS
CAACAGTCAGTCCCAAAGGT+TGG 0.593294 6_1:-9466495 Msa0873860:CDS
AGAATCTGTGTTAGTACTAG+GGG 0.593869 6_1:+9466791 None:intergenic
AGTGGAGTTCCAAGTTCGAT+CGG 0.595372 6_1:-9470555 Msa0873860:CDS
TGGGAAGAAGTCAAGTCTGA+GGG 0.596327 6_1:-9467203 Msa0873860:CDS
TCAGACAGTACAACAGCTGG+TGG 0.597261 6_1:-9466216 Msa0873860:CDS
AGCTTGAAATGGAACAAAAG+CGG 0.598423 6_1:-9468117 Msa0873860:CDS
AAGGAGGCCAAGGAGTTCCT+GGG 0.599693 6_1:-9466405 Msa0873860:CDS
ACAGGAAGTTGAGAAGGAGA+AGG 0.599786 6_1:-9467570 Msa0873860:CDS
TCAAGAGGAGATATAGGCAA+GGG 0.601659 6_1:+9466915 None:intergenic
TTGATGAAGCTGTGATGAAG+AGG 0.603907 6_1:-9471668 Msa0873860:CDS
AGAGAGGATATGCTAAGTGA+TGG 0.606221 6_1:-9469007 Msa0873860:CDS
CGTTCTTGAAGAGTAACTAT+CGG 0.607606 6_1:+9466669 None:intergenic
ACATTGCGCCGGTGATTGAA+CGG 0.608062 6_1:+9471916 None:intergenic
ATCTCCTCTTGAGAACTCAA+AGG 0.608232 6_1:-9466904 Msa0873860:CDS
AGTGAAGGCTGTGGTTAAGG+AGG 0.611402 6_1:-9466421 Msa0873860:CDS
AACACGCTCAGTGAAGGCTG+TGG 0.612656 6_1:-9466430 Msa0873860:CDS
TATGAAGTTGCGAGAGCTGG+AGG 0.612971 6_1:-9469252 Msa0873860:CDS
TGAGAAGCTCAGGAATTGCA+AGG 0.613927 6_1:-9467012 Msa0873860:CDS
GAAAGAACGTGAACGCCTTG+TGG 0.614870 6_1:-9467063 Msa0873860:CDS
ATAAATCTCAAAAGAAAACA+TGG 0.615373 6_1:+9464079 None:intergenic
AAAGTTTGCTTCAAAAGGAG+CGG 0.615802 6_1:-9469223 Msa0873860:CDS
TTCTCAACAGTCAGTCCCAA+AGG 0.615847 6_1:-9466499 Msa0873860:CDS
TATGATTATCAGTACAACAT+GGG 0.616422 6_1:-9470601 Msa0873860:CDS
GGACTGTGGGGAAGTTGTCA+GGG 0.618125 6_1:-9466991 Msa0873860:CDS
AAAGTTGAAATCATTGAAGG+AGG 0.620070 6_1:-9467942 Msa0873860:CDS
GATCTCAACCGTAAAGTCTG+TGG 0.620220 6_1:-9464532 Msa0873860:CDS
ATGGGAAGAAGTCAAGTCTG+AGG 0.620671 6_1:-9467204 Msa0873860:CDS
TGAGATCTGCACTAGAGTCG+TGG 0.621822 6_1:+9464548 None:intergenic
GAGGAAGCTACGGCAAAGAG+AGG 0.623939 6_1:-9469023 Msa0873860:CDS
CGACGCGGTGTGAATGATGC+CGG 0.624761 6_1:+9471858 None:intergenic
AATGATGCCGGTGTACCGAT+AGG 0.624939 6_1:+9471870 None:intergenic
CTTACGTCTTATGCCGCCTG+AGG 0.630170 6_1:+9466130 None:intergenic
TGAAGCTTACTCAAGATGAG+AGG 0.633299 6_1:-9467760 Msa0873860:CDS
ATCCGATAACATTGCCAGAG+AGG 0.633599 6_1:-9466595 Msa0873860:CDS
CAGTACATTTAATTTGCCAG+AGG 0.636039 6_1:+9464006 None:intergenic
AAGAGAGAGAAAATTTCAGG+AGG 0.637039 6_1:-9467282 Msa0873860:CDS
CAAACTTCTAAGATTGCTGA+AGG 0.639219 6_1:-9466270 Msa0873860:CDS
TGCAGAAGCCAGGCTTGCTG+AGG 0.640040 6_1:-9469300 Msa0873860:CDS
GGAGTTATCCAACGAAACAA+AGG 0.641093 6_1:-9464658 Msa0873860:CDS
TGCGAGGGCAGACTTAGGTG+TGG 0.641638 6_1:+9471827 None:intergenic
CATTTGCGGAACACAGACAC+AGG 0.642105 6_1:+9466837 None:intergenic
AGCTTCTGGTGGTAAACAGG+AGG 0.643491 6_1:-9464622 Msa0873860:CDS
CCGATAACATTGCCAGAGAG+GGG 0.644054 6_1:-9466593 Msa0873860:CDS
AGAAGCGTTACAACCTCAGG+CGG 0.644751 6_1:-9466143 Msa0873860:CDS
ACCTGACAGTAAAGAGTGTG+GGG 0.645197 6_1:-9466943 Msa0873860:CDS
TGGTGCTACAACCAACTCTG+TGG 0.647168 6_1:-9464361 Msa0873860:CDS
AGGAGTGGGAGAGGAAGCTA+CGG 0.647313 6_1:-9469033 Msa0873860:CDS
GACGTTGAAAATGAGGACGA+GGG 0.648902 6_1:-9464279 Msa0873860:CDS
ACGTTGAAAATGAGGACGAG+GGG 0.656363 6_1:-9464278 Msa0873860:CDS
AGGTTGGTCGACAAAGACCT+GGG 0.661364 6_1:-9466479 Msa0873860:CDS
TTACCTGACAGTAAAGAGTG+TGG 0.661921 6_1:-9466945 Msa0873860:CDS
ACGACAGATAGCAGATGGAG+TGG 0.664564 6_1:-9466649 Msa0873860:CDS
TTATGATTATCAGTACAACA+TGG 0.667050 6_1:-9470602 Msa0873860:CDS
AATCTTCATGCATCTCACGT+TGG 0.667214 6_1:+9467120 None:intergenic
ACTAAACGAACGATTAATTG+CGG 0.671015 6_1:-9472028 Msa0873860:five_prime_UTR
GTGTAGCACTTTCTTCAATG+CGG 0.671316 6_1:+9464337 None:intergenic
TTGAGTTTAGAAAAGCAGTG+TGG 0.671606 6_1:-9470424 Msa0873860:CDS
ATGGGAAGAAGACTGGACTT+CGG 0.672228 6_1:+9469400 None:intergenic
AGTCAACCATAGGGAAACCA+AGG 0.673395 6_1:-9468035 Msa0873860:CDS
AGGCACAGTTTCATCAACAC+AGG 0.676532 6_1:-9464679 Msa0873860:CDS
GAATCAGTCAAAGAACCCAA+CGG 0.677951 6_1:+9471759 None:intergenic
CAGAATGCTGCTGATAGTGA+AGG 0.678423 6_1:-9466243 Msa0873860:CDS
CAGGAATTGCAAGGACTGTG+GGG 0.681894 6_1:-9467003 Msa0873860:CDS
AGAACTAGCTGAAACTCAGG+AGG 0.683450 6_1:-9470524 Msa0873860:CDS
GCTACATGGAAAGTTTGACA+GGG 0.685346 6_1:-9466536 Msa0873860:CDS
AACATTTACATCAAACTCAG+GGG 0.685860 6_1:+9466740 None:intergenic
TACATGGAAAGTTTGACAGG+GGG 0.687457 6_1:-9466534 Msa0873860:CDS
AATGTACTGCTTAGGCACTG+AGG 0.693121 6_1:-9463992 Msa0873860:three_prime_UTR
AAAGCGGAAATCTCTCGCTG+AGG 0.695563 6_1:-9468101 Msa0873860:CDS
TCTATATTAGGAGATGACAC+AGG 0.699986 6_1:+9466696 None:intergenic
TGAGGAGTTTAGCAGCAAGG+AGG 0.705004 6_1:-9468083 Msa0873860:CDS
CAGACAGTACAACAGCTGGT+GGG 0.705347 6_1:-9466215 Msa0873860:CDS
CGTTGAAAATGAGGACGAGG+GGG 0.709289 6_1:-9464277 Msa0873860:CDS
AGAGACAATGTTGATGACAA+TGG 0.709550 6_1:-9464381 Msa0873860:CDS
GGGAAGAAGTCAAGTCTGAG+GGG 0.719282 6_1:-9467202 Msa0873860:CDS
TCCACCCACACAAGTTACAG+GGG 0.722043 6_1:-9466166 Msa0873860:CDS
CTACATGGAAAGTTTGACAG+GGG 0.722540 6_1:-9466535 Msa0873860:CDS
TCAGTCAAAGAACCCAACGG+CGG 0.741668 6_1:+9471762 None:intergenic
TTGGTCGACAAAGACCTGGG+AGG 0.780419 6_1:-9466476 Msa0873860:CDS
GGTGTGGCACCAATTCGACG+CGG 0.819673 6_1:+9471843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTGTTTTGAA+TGG - chr6_1:9464158-9464177 Msa0873860:three_prime_UTR 10.0%
!!! ATTCTGTTTTTTTTTTTTTT+TGG - chr6_1:9464229-9464248 Msa0873860:CDS 10.0%
!!! TTTTACAGATTATAATTTAA+AGG + chr6_1:9464989-9465008 None:intergenic 10.0%
!!! CATAATTGAATTTTAAATAT+TGG - chr6_1:9465944-9465963 Msa0873860:intron 10.0%
!!! TATTCATAAAATTTAAAACA+AGG + chr6_1:9466568-9466587 None:intergenic 10.0%
!! TAATTCTTTATTAAAAGAAA+AGG - chr6_1:9466862-9466881 Msa0873860:CDS 10.0%
!!! TAAAGGTAAAAATATTTTTT+TGG - chr6_1:9471688-9471707 Msa0873860:CDS 10.0%
!!! TTTTTTTTTGGTTTTATAGA+TGG - chr6_1:9464241-9464260 Msa0873860:CDS 15.0%
!!! TAGATAAGTTGTTTTTTTTT+TGG - chr6_1:9464497-9464516 Msa0873860:intron 15.0%
!! TTAAAAGAAATGTCAATATA+CGG - chr6_1:9464936-9464955 Msa0873860:intron 15.0%
!! TAATCTGTAAAATAATTTCA+TGG - chr6_1:9464997-9465016 Msa0873860:intron 15.0%
!!! TTTGTTTTTCTTTTTACATT+TGG - chr6_1:9465431-9465450 Msa0873860:intron 15.0%
!! ATAATCTTGTATAAAAAATG+TGG - chr6_1:9465781-9465800 Msa0873860:intron 15.0%
!!! AATTTTAAATATTGGATATC+CGG - chr6_1:9465952-9465971 Msa0873860:intron 15.0%
!! TAAAATTATATTATTAGGAC+TGG + chr6_1:9467239-9467258 None:intergenic 15.0%
!!! TTAGTTTTTTGAAATTTACT+TGG - chr6_1:9467330-9467349 Msa0873860:CDS 15.0%
!!! AGTTATTACTTTTAAACTAT+CGG + chr6_1:9467359-9467378 None:intergenic 15.0%
!! AATGTTAATATAGAAAAAGT+AGG - chr6_1:9469018-9469037 Msa0873860:CDS 15.0%
!!! TGTTTTATATATAGATAGAT+TGG - chr6_1:9469800-9469819 Msa0873860:intron 15.0%
!!! ACTTTTCTTTATTTCTTATT+GGG + chr6_1:9469885-9469904 None:intergenic 15.0%
!!! AACTTTTCTTTATTTCTTAT+TGG + chr6_1:9469886-9469905 None:intergenic 15.0%
!!! CTTTTGAGATTTATTAATAA+AGG - chr6_1:9471671-9471690 Msa0873860:CDS 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr6_1:9471846-9471865 Msa0873860:CDS 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr6_1:9471847-9471866 Msa0873860:CDS 15.0%
!!! TTTTATAGATGGTTTTTCTA+GGG - chr6_1:9464252-9464271 Msa0873860:CDS 20.0%
!!! GTTTTTTGTGAATTAGATAA+CGG - chr6_1:9464519-9464538 Msa0873860:CDS 20.0%
!!! TTTTTTGTGAATTAGATAAC+GGG - chr6_1:9464520-9464539 Msa0873860:CDS 20.0%
!!! GTTATTGTAACAAGTTATTT+TGG - chr6_1:9465048-9465067 Msa0873860:intron 20.0%
!! ATTAACAATTGATTAACTTC+TGG - chr6_1:9465093-9465112 Msa0873860:intron 20.0%
!!! TTTTTACATTTGGTTAGTAT+TGG - chr6_1:9465441-9465460 Msa0873860:intron 20.0%
!! ATGAACTATATATGCATAAT+TGG - chr6_1:9465548-9465567 Msa0873860:intron 20.0%
!! TAAAAAATGTGGAAATGTAA+TGG - chr6_1:9465792-9465811 Msa0873860:intron 20.0%
!! ACTTATATCTATCTAATCAT+AGG + chr6_1:9466018-9466037 None:intergenic 20.0%
!!! ATTGCTTTCATTTGATTTTA+AGG - chr6_1:9466215-9466234 Msa0873860:CDS 20.0%
!! AATCAGTATTCTATAAACAA+AGG - chr6_1:9466675-9466694 Msa0873860:CDS 20.0%
!! ATCAGTATTCTATAAACAAA+GGG - chr6_1:9466676-9466695 Msa0873860:CDS 20.0%
!!! CAAATTACAAGTTTTACAAA+AGG + chr6_1:9466971-9466990 None:intergenic 20.0%
!! TTAAAAATAATCACCACTTA+TGG - chr6_1:9467387-9467406 Msa0873860:CDS 20.0%
!!! AAGTTATGTAAATTTGCTTT+CGG + chr6_1:9467476-9467495 None:intergenic 20.0%
!! TATGGAAGATAATTTAAAGA+AGG - chr6_1:9468252-9468271 Msa0873860:intron 20.0%
!! TGAAAAGGTAAAAAATGAAA+AGG - chr6_1:9468345-9468364 Msa0873860:intron 20.0%
!! TAAGAAATAAAGAAAAGTTG+TGG - chr6_1:9469887-9469906 Msa0873860:intron 20.0%
!!! TTTTTTTTGTTGCAAAAGTT+TGG - chr6_1:9470057-9470076 Msa0873860:intron 20.0%
!!! ACAATTTTCTTACAAATCTT+GGG + chr6_1:9470346-9470365 None:intergenic 20.0%
!!! TACAATTTTCTTACAAATCT+TGG + chr6_1:9470347-9470366 None:intergenic 20.0%
!! AGATTTGTAAGAAAATTGTA+TGG - chr6_1:9470347-9470366 Msa0873860:intron 20.0%
!!! AGTTCTAAAACTTACTATTT+TGG - chr6_1:9470418-9470437 Msa0873860:CDS 20.0%
!! TGCTAGATTGATTATTTATA+TGG - chr6_1:9470456-9470475 Msa0873860:CDS 20.0%
!!! TTTGTATAGTTTTTTGATTG+AGG - chr6_1:9470588-9470607 Msa0873860:CDS 20.0%
!!! TTGTATAGTTTTTTGATTGA+GGG - chr6_1:9470589-9470608 Msa0873860:CDS 20.0%
!!! TTAATGTTGGATTTTTTTAC+TGG - chr6_1:9470623-9470642 Msa0873860:intron 20.0%
!!! TAATGTTGGATTTTTTTACT+GGG - chr6_1:9470624-9470643 Msa0873860:intron 20.0%
!! AGTAAGATATTCTGTATTAT+TGG + chr6_1:9470695-9470714 None:intergenic 20.0%
!! ATTAAATCAACCATCAATAA+AGG + chr6_1:9471274-9471293 None:intergenic 20.0%
!!! TTATTGATGGTTGATTTAAT+TGG - chr6_1:9471274-9471293 Msa0873860:intron 20.0%
!! ATAAATCTCAAAAGAAAACA+TGG + chr6_1:9471665-9471684 None:intergenic 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr6_1:9471848-9471867 Msa0873860:CDS 20.0%
!! AAAGTGGAATATATTGTATT+GGG - chr6_1:9471871-9471890 Msa0873860:CDS 20.0%
!! TATTTAGTGTTATATTGCAT+TGG - chr6_1:9471911-9471930 Msa0873860:exon 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr6_1:9471944-9471963 Msa0873860:five_prime_UTR 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr6_1:9471945-9471964 Msa0873860:five_prime_UTR 20.0%
!! TATCTTGAATTCATCTTTTC+CGG - chr6_1:9463795-9463814 Msa0873860:intron 25.0%
!!! TTGTTTTGAATGGTTTTTCT+AGG - chr6_1:9464168-9464187 Msa0873860:three_prime_UTR 25.0%
!!! TGTTTTGAATGGTTTTTCTA+GGG - chr6_1:9464169-9464188 Msa0873860:three_prime_UTR 25.0%
!! GTTTTATAGATGGTTTTTCT+AGG - chr6_1:9464251-9464270 Msa0873860:CDS 25.0%
! TAGATATTACTGTAACTTTG+AGG - chr6_1:9464352-9464371 Msa0873860:CDS 25.0%
!! TAATTTGCATTTGTTAGTTG+TGG - chr6_1:9464558-9464577 Msa0873860:CDS 25.0%
! TGTTGTTACTATTGAGTTTA+AGG - chr6_1:9464588-9464607 Msa0873860:CDS 25.0%
! ACTATTGAGTTTAAGGAATT+AGG - chr6_1:9464595-9464614 Msa0873860:CDS 25.0%
! AATATTGTCATGATATTGCA+AGG - chr6_1:9464874-9464893 Msa0873860:intron 25.0%
! TTATGATTATCAGTACAACA+TGG - chr6_1:9465139-9465158 Msa0873860:intron 25.0%
! TATGATTATCAGTACAACAT+GGG - chr6_1:9465140-9465159 Msa0873860:intron 25.0%
! AGTCTATAATTGTGTTGAAT+TGG - chr6_1:9465375-9465394 Msa0873860:intron 25.0%
! ATAGTTCATAGTGAAGTTAA+AGG + chr6_1:9465537-9465556 None:intergenic 25.0%
!! TTACAAAAAATTTTGTGCAC+CGG - chr6_1:9465899-9465918 Msa0873860:intron 25.0%
!! ACTAAAGTATCAAGTATAAC+CGG + chr6_1:9465974-9465993 None:intergenic 25.0%
! CTTTAGTCAAATTACTTCTT+AGG - chr6_1:9465987-9466006 Msa0873860:intron 25.0%
! ATGAAAAGACAACCAATTAA+TGG + chr6_1:9466108-9466127 None:intergenic 25.0%
!!! TTCATTGTGTTTGCTATTTT+AGG - chr6_1:9466123-9466142 Msa0873860:intron 25.0%
! AAACACAAGACTAAATATGA+TGG + chr6_1:9466598-9466617 None:intergenic 25.0%
!!! GTAAAACTTGTAATTTGCTT+TGG - chr6_1:9466974-9466993 Msa0873860:CDS 25.0%
!!! TTTTGGTCTTTCCATATTTA+TGG - chr6_1:9466997-9467016 Msa0873860:CDS 25.0%
! TCATAACCATACCATAAATA+TGG + chr6_1:9467011-9467030 None:intergenic 25.0%
!!! AGTTGATTTGGTTTAAGTTT+GGG + chr6_1:9467268-9467287 None:intergenic 25.0%
! ATTCAATTTCTTTCCATAAG+TGG + chr6_1:9467403-9467422 None:intergenic 25.0%
! ATTATATATCACAGGACTAT+GGG + chr6_1:9467446-9467465 None:intergenic 25.0%
! GAAAACACATTATATATCAC+AGG + chr6_1:9467454-9467473 None:intergenic 25.0%
! CTTGTACATATATTTCTTAC+AGG - chr6_1:9467538-9467557 Msa0873860:CDS 25.0%
! TACATATATTTCTTACAGGA+AGG - chr6_1:9467542-9467561 Msa0873860:CDS 25.0%
! ACATATATTTCTTACAGGAA+GGG - chr6_1:9467543-9467562 Msa0873860:CDS 25.0%
! AACAAAGTTGAAATCATTGA+AGG - chr6_1:9467796-9467815 Msa0873860:CDS 25.0%
! AGAATTTAAATGCTGAACTT+GGG - chr6_1:9467900-9467919 Msa0873860:CDS 25.0%
! GCAGAAAGATTTAATTATGA+AGG - chr6_1:9468060-9468079 Msa0873860:CDS 25.0%
! TAGTGATTCAATTAAACAAG+AGG - chr6_1:9468309-9468328 Msa0873860:intron 25.0%
!! GGAATTTCTTTTATCTGAAA+AGG - chr6_1:9468330-9468349 Msa0873860:intron 25.0%
!! AAAAAATGAAAAGGCACAAA+TGG - chr6_1:9468354-9468373 Msa0873860:intron 25.0%
!! AAATGGTTCAAGATTTTGAA+TGG - chr6_1:9468371-9468390 Msa0873860:intron 25.0%
! TTGAGAATGAAATTCAGAAA+AGG - chr6_1:9468407-9468426 Msa0873860:intron 25.0%
! TAACATTTACATCAAACTCA+GGG + chr6_1:9469005-9469024 None:intergenic 25.0%
! TTAACATTTACATCAAACTC+AGG + chr6_1:9469006-9469025 None:intergenic 25.0%
!! GTTTTCTTGGATGTTTATAT+TGG - chr6_1:9469729-9469748 Msa0873860:intron 25.0%
! TATATTGGCATTAATTCTGA+AGG - chr6_1:9469744-9469763 Msa0873860:intron 25.0%
!! CTTGCTAATTTTCAAACTAA+AGG - chr6_1:9469825-9469844 Msa0873860:intron 25.0%
!! TTTATTTCTTATTGGGAAGA+GGG + chr6_1:9469878-9469897 None:intergenic 25.0%
! ACTATATTAGAAACTGAAAG+GGG + chr6_1:9469954-9469973 None:intergenic 25.0%
! CACTATATTAGAAACTGAAA+GGG + chr6_1:9469955-9469974 None:intergenic 25.0%
! ACACTATATTAGAAACTGAA+AGG + chr6_1:9469956-9469975 None:intergenic 25.0%
!! AAGTCATCTAAATTGATTCT+TGG - chr6_1:9469987-9470006 Msa0873860:intron 25.0%
!! AGTCATCTAAATTGATTCTT+GGG - chr6_1:9469988-9470007 Msa0873860:intron 25.0%
! TTGCAACAAAAAAAAAAAGC+AGG + chr6_1:9470052-9470071 None:intergenic 25.0%
! AATAATTATTACATTCCCAC+AGG - chr6_1:9470082-9470101 Msa0873860:intron 25.0%
! TTGGCTAAATCAATTAACAT+AGG + chr6_1:9470222-9470241 None:intergenic 25.0%
! TTGACTAATCAATTAACAGT+TGG + chr6_1:9470241-9470260 None:intergenic 25.0%
! TACAAATCTTGGGATAATTT+GGG + chr6_1:9470336-9470355 None:intergenic 25.0%
! TTACAAATCTTGGGATAATT+TGG + chr6_1:9470337-9470356 None:intergenic 25.0%
! AGAAAATTGTATGGTTACAA+TGG - chr6_1:9470356-9470375 Msa0873860:intron 25.0%
! GGCATTTGAATTATTAATGT+TGG - chr6_1:9470610-9470629 Msa0873860:intron 25.0%
! AATATCTTACTGTGTGTAAT+AGG - chr6_1:9470704-9470723 Msa0873860:intron 25.0%
! CATTAAATAGTTTCTCAATC+GGG + chr6_1:9470744-9470763 None:intergenic 25.0%
! GCATTAAATAGTTTCTCAAT+CGG + chr6_1:9470745-9470764 None:intergenic 25.0%
! ATTGAGAAACTATTTAATGC+AGG - chr6_1:9470745-9470764 Msa0873860:intron 25.0%
! TTGGTATTTCAAACTGTAAA+AGG + chr6_1:9471341-9471360 None:intergenic 25.0%
! TTAACCCAAAGATTAGATTA+TGG + chr6_1:9471639-9471658 None:intergenic 25.0%
!! ATTTTCCATTCTAATGCTAA+TGG - chr6_1:9471772-9471791 Msa0873860:CDS 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr6_1:9471870-9471889 Msa0873860:CDS 25.0%
ACTAAACGAACGATTAATTG+CGG - chr6_1:9463713-9463732 Msa0873860:three_prime_UTR 30.0%
GATATCAAACACTCGATTTA+GGG + chr6_1:9463779-9463798 None:intergenic 30.0%
AGATATCAAACACTCGATTT+AGG + chr6_1:9463744-9463763 None:intergenic 30.0%
!!! TTTCTAGGGTATGTTTTTCT+AGG - chr6_1:9464266-9464285 Msa0873860:CDS 30.0%
CATCAATATGCTACAAAACT+CGG + chr6_1:9464329-9464348 None:intergenic 30.0%
TTGAAGACTATAAACATGTC+TGG - chr6_1:9464409-9464428 Msa0873860:intron 30.0%
!! CAATAGTTTTGCGAGTATTT+AGG - chr6_1:9464655-9464674 Msa0873860:CDS 30.0%
AAAATTCAAGGAAATAACCC+AGG + chr6_1:9464800-9464819 None:intergenic 30.0%
GAAATTGAATCACATGGTTT+AGG + chr6_1:9464824-9464843 None:intergenic 30.0%
AACTTCTCATTATTCTACAG+TGG + chr6_1:9464918-9464937 None:intergenic 30.0%
AAAGAAATGTCAATATACGG+TGG - chr6_1:9464939-9464958 Msa0873860:intron 30.0%
TACTGATAATCATAAAGCTG+CGG + chr6_1:9465134-9465153 None:intergenic 30.0%
! TCAAATTTTCCTCTCGTTTT+TGG + chr6_1:9465289-9465308 None:intergenic 30.0%
AAAAACGAGAGGAAAATTTG+AGG - chr6_1:9465288-9465307 Msa0873860:intron 30.0%
ATAGTGAAGTTAAAGGAACA+GGG + chr6_1:9465530-9465549 None:intergenic 30.0%
TGTAAAAACATCGTATATGC+TGG - chr6_1:9465709-9465728 Msa0873860:intron 30.0%
ATGTCAAGGACAAAAATGTA+GGG + chr6_1:9465750-9465769 None:intergenic 30.0%
TTCCAACAAAAACACATGTT+TGG - chr6_1:9465845-9465864 Msa0873860:intron 30.0%
TCTCAATTATGCATTCTAAC+CGG + chr6_1:9465921-9465940 None:intergenic 30.0%
GTATCATTGCAGTATATAAC+AGG + chr6_1:9466057-9466076 None:intergenic 30.0%
!! TTTTAGGTGTTCATCTTGAA+TGG - chr6_1:9466139-9466158 Msa0873860:CDS 30.0%
! ACTTTTATCACAGAGTTTTG+AGG - chr6_1:9466191-9466210 Msa0873860:CDS 30.0%
!! TGCTTTATCTAGCTTTGTAT+GGG + chr6_1:9466362-9466381 None:intergenic 30.0%
!! TTGCTTTATCTAGCTTTGTA+TGG + chr6_1:9466363-9466382 None:intergenic 30.0%
GCTAGATAAAGCAAATGAAT+TGG - chr6_1:9466369-9466388 Msa0873860:CDS 30.0%
AGATAAAGCAAATGAATTGG+TGG - chr6_1:9466372-9466391 Msa0873860:CDS 30.0%
! TTTAAAACAAGGTCCATACT+CGG + chr6_1:9466557-9466576 None:intergenic 30.0%
GTGACTCAATTAATTGAAGT+TGG - chr6_1:9466619-9466638 Msa0873860:CDS 30.0%
TAAACAAAGGGAAGATTTGA+AGG - chr6_1:9466688-9466707 Msa0873860:CDS 30.0%
!!! CTTGTAATTTGCTTTGGTTT+TGG - chr6_1:9466980-9466999 Msa0873860:CDS 30.0%
GTCTTTCCATATTTATGGTA+TGG - chr6_1:9467002-9467021 Msa0873860:CDS 30.0%
AGAGAAAGAATTACATGAAC+TGG - chr6_1:9467072-9467091 Msa0873860:CDS 30.0%
!! ATTATTAGGACTGGTTTGTT+TGG + chr6_1:9467230-9467249 None:intergenic 30.0%
!! GAGTTGATTTGGTTTAAGTT+TGG + chr6_1:9467269-9467288 None:intergenic 30.0%
CATTATATATCACAGGACTA+TGG + chr6_1:9467447-9467466 None:intergenic 30.0%
AAAGTTGAAATCATTGAAGG+AGG - chr6_1:9467799-9467818 Msa0873860:CDS 30.0%
GAGAATTTAAATGCTGAACT+TGG - chr6_1:9467899-9467918 Msa0873860:CDS 30.0%
TGAAATTCAGAAAAGGAAAG+AGG - chr6_1:9468414-9468433 Msa0873860:intron 30.0%
TAGAATCTGTGTTAGTACTA+GGG + chr6_1:9468954-9468973 None:intergenic 30.0%
ATAGAATCTGTGTTAGTACT+AGG + chr6_1:9468955-9468974 None:intergenic 30.0%
AGTACTAACACAGATTCTAT+TGG - chr6_1:9468955-9468974 Msa0873860:CDS 30.0%
ATTGGTACTTCAAATATAGC+TGG - chr6_1:9468973-9468992 Msa0873860:CDS 30.0%
TTGGTACTTCAAATATAGCT+GGG - chr6_1:9468974-9468993 Msa0873860:CDS 30.0%
AACATTTACATCAAACTCAG+GGG + chr6_1:9469004-9469023 None:intergenic 30.0%
!!! CTGGTTGTATTTAGTTTTTG+CGG - chr6_1:9469703-9469722 Msa0873860:intron 30.0%
! TTATTTCTTATTGGGAAGAG+GGG + chr6_1:9469877-9469896 None:intergenic 30.0%
! CTTTATTTCTTATTGGGAAG+AGG + chr6_1:9469879-9469898 None:intergenic 30.0%
CTATATTAGAAACTGAAAGG+GGG + chr6_1:9469953-9469972 None:intergenic 30.0%
! CACTTTTATAAAAGACCTGT+GGG + chr6_1:9470100-9470119 None:intergenic 30.0%
!! TCACTTTTATAAAAGACCTG+TGG + chr6_1:9470101-9470120 None:intergenic 30.0%
! ACAGGTCTTTTATAAAAGTG+AGG - chr6_1:9470100-9470119 Msa0873860:intron 30.0%
! TCTTTTATAAAAGTGAGGTG+TGG - chr6_1:9470105-9470124 Msa0873860:intron 30.0%
GTCTTCTTGTGTTTATTACA+AGG + chr6_1:9470159-9470178 None:intergenic 30.0%
!! AGTGTATGATTAGTTTGCAA+TGG - chr6_1:9470290-9470309 Msa0873860:intron 30.0%
ACTATACAAACTAGATAACC+AGG + chr6_1:9470578-9470597 None:intergenic 30.0%
!!! TTTTTTACTGGGTTATCTGA+AGG - chr6_1:9470635-9470654 Msa0873860:intron 30.0%
TATTGTTTGTGTCTTTCATG+TGG - chr6_1:9470784-9470803 Msa0873860:intron 30.0%
TCTTGATTATTCTGACATCA+CGG - chr6_1:9470875-9470894 Msa0873860:intron 30.0%
AGGCATAACATTCTATCAAA+CGG + chr6_1:9470964-9470983 None:intergenic 30.0%
AATCAGTCTTCCTTTATTGA+TGG - chr6_1:9471261-9471280 Msa0873860:intron 30.0%
! CATCCTCATTCCTTTTAAAT+AGG - chr6_1:9471606-9471625 Msa0873860:intron 30.0%
TCTCCTATTTAAAAGGAATG+AGG + chr6_1:9471612-9471631 None:intergenic 30.0%
AGTAGCCATAATCTAATCTT+TGG - chr6_1:9471631-9471650 Msa0873860:CDS 30.0%
GTAGCCATAATCTAATCTTT+GGG - chr6_1:9471632-9471651 Msa0873860:CDS 30.0%
GCAAATTAAATGTACTGCTT+AGG - chr6_1:9471741-9471760 Msa0873860:CDS 30.0%
AGTATCCATTAGCATTAGAA+TGG + chr6_1:9471780-9471799 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr6_1:9471855-9471874 Msa0873860:CDS 30.0%
! TTGAAATGGGTCAGTTATTT+TGG - chr6_1:9471958-9471977 Msa0873860:five_prime_UTR 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG - chr6_1:9471959-9471978 Msa0873860:five_prime_UTR 30.0%
AGAAAATGAGTCAGTTATTC+CGG - chr6_1:9471994-9472013 Msa0873860:five_prime_UTR 30.0%
! CGAGTGTTTGATATCTTTTC+CGG - chr6_1:9463748-9463767 Msa0873860:intron 35.0%
! CTTCTAGTTATGCTGAAGAT+TGG - chr6_1:9464025-9464044 Msa0873860:three_prime_UTR 35.0%
!! GGGTATGTTTTTCTAGGAAT+TGG - chr6_1:9464272-9464291 Msa0873860:CDS 35.0%
!! TTTTTCTAGGAATTGGTCTC+CGG - chr6_1:9464279-9464298 Msa0873860:CDS 35.0%
TATTCGACTCTGATACACAT+CGG + chr6_1:9464438-9464457 None:intergenic 35.0%
ATGTGTATCAGAGTCGAATA+CGG - chr6_1:9464438-9464457 Msa0873860:intron 35.0%
CTCGCAAAACTATTGACAAA+TGG + chr6_1:9464650-9464669 None:intergenic 35.0%
! AGTTTTGCGAGTATTTAGGA+TGG - chr6_1:9464659-9464678 Msa0873860:CDS 35.0%
!! GTTTTGCGAGTATTTAGGAT+GGG - chr6_1:9464660-9464679 Msa0873860:CDS 35.0%
!! TTTTGCGAGTATTTAGGATG+GGG - chr6_1:9464661-9464680 Msa0873860:CDS 35.0%
! GGGGATATATTCTCTTTTGT+CGG - chr6_1:9464680-9464699 Msa0873860:CDS 35.0%
! TATTCTCTTTTGTCGGAACT+AGG - chr6_1:9464687-9464706 Msa0873860:intron 35.0%
CATGGTTTAGGCAAAATTCA+AGG + chr6_1:9464812-9464831 None:intergenic 35.0%
GCAAGAGAAATTGAATCACA+TGG + chr6_1:9464830-9464849 None:intergenic 35.0%
ATTGCAAGGAAATCTTACCA+AGG - chr6_1:9464888-9464907 Msa0873860:intron 35.0%
TATTCTACAGTGGTAATCCT+TGG + chr6_1:9464908-9464927 None:intergenic 35.0%
TAATCATCGACAAAGTAACG+TGG + chr6_1:9465077-9465096 None:intergenic 35.0%
ACTCTTGCTTCTCAATAAGA+AGG + chr6_1:9465169-9465188 None:intergenic 35.0%
TTCTTATTGAGAAGCAAGAG+TGG - chr6_1:9465168-9465187 Msa0873860:intron 35.0%
TTGAGTTTAGAAAAGCAGTG+TGG - chr6_1:9465317-9465336 Msa0873860:intron 35.0%
GTATTGGATACGTTGATCAT+AGG - chr6_1:9465457-9465476 Msa0873860:intron 35.0%
!! TTGATCATAGGCTTTGAACT+GGG - chr6_1:9465469-9465488 Msa0873860:intron 35.0%
TAGTGAAGTTAAAGGAACAG+GGG + chr6_1:9465529-9465548 None:intergenic 35.0%
CATAGTGAAGTTAAAGGAAC+AGG + chr6_1:9465531-9465550 None:intergenic 35.0%
CATAAGAAGACAAAACCCAA+AGG + chr6_1:9465615-9465634 None:intergenic 35.0%
GATGTCAAGGACAAAAATGT+AGG + chr6_1:9465751-9465770 None:intergenic 35.0%
! TTTTTGTCCTTGACATCATC+AGG - chr6_1:9465754-9465773 Msa0873860:intron 35.0%
!! CTCCAAACATGTGTTTTTGT+TGG + chr6_1:9465850-9465869 None:intergenic 35.0%
CAACAAAAACACATGTTTGG+AGG - chr6_1:9465848-9465867 Msa0873860:intron 35.0%
CAAGTATAATGCCCTTTGTA+CGG + chr6_1:9465877-9465896 None:intergenic 35.0%
CTTTAGTCAAACTACTTCCT+AGG - chr6_1:9466076-9466095 Msa0873860:intron 35.0%
ACTCTGTGATAAAAGTCTCA+AGG + chr6_1:9466187-9466206 None:intergenic 35.0%
AAAGCAAATGAATTGGTGGA+TGG - chr6_1:9466376-9466395 Msa0873860:CDS 35.0%
! TCGTGAAAGTTTGCTTCAAA+AGG - chr6_1:9466513-9466532 Msa0873860:CDS 35.0%
! AAAGTTTGCTTCAAAAGGAG+CGG - chr6_1:9466518-9466537 Msa0873860:CDS 35.0%
! AGTGATGGTAGGCAAAATTT+TGG - chr6_1:9466749-9466768 Msa0873860:CDS 35.0%
AGAAAAAAAGCTGAAGCAGA+AGG - chr6_1:9466799-9466818 Msa0873860:CDS 35.0%
ATGGTTATGATTGCAGAAAG+TGG - chr6_1:9467021-9467040 Msa0873860:CDS 35.0%
!! ATATTGACCTCAAAGGTACT+AGG + chr6_1:9467305-9467324 None:intergenic 35.0%
!! TAGTACCTTTGAGGTCAATA+TGG - chr6_1:9467304-9467323 Msa0873860:CDS 35.0%
AATCACCATATTGACCTCAA+AGG + chr6_1:9467312-9467331 None:intergenic 35.0%
TTTGCTCATCAAGAAGTTTC+TGG + chr6_1:9467571-9467590 None:intergenic 35.0%
AGCTTGAAATGGAACAAAAG+CGG - chr6_1:9467624-9467643 Msa0873860:CDS 35.0%
TACGAAGTCTGAGAGAATAA+AGG - chr6_1:9467754-9467773 Msa0873860:CDS 35.0%
GAGAATAAAGGAGCAAGATA+AGG - chr6_1:9467766-9467785 Msa0873860:CDS 35.0%
GAAAATAAAAGAGAGAGAGC+TGG - chr6_1:9467835-9467854 Msa0873860:CDS 35.0%
TTTGCAATTGGAACTAAAGC+AGG - chr6_1:9468018-9468037 Msa0873860:CDS 35.0%
GCTTAGGTTTGAGAAAGAAT+GGG - chr6_1:9468108-9468127 Msa0873860:CDS 35.0%
TGAAGAACAGTGAAGAAGAA+AGG - chr6_1:9468209-9468228 Msa0873860:intron 35.0%
GAAAAGAGAGAAGCAAGATA+TGG - chr6_1:9468234-9468253 Msa0873860:intron 35.0%
GGAAAGAGAGAGAAAATTTC+AGG - chr6_1:9468456-9468475 Msa0873860:intron 35.0%
AAGAGAGAGAAAATTTCAGG+AGG - chr6_1:9468459-9468478 Msa0873860:intron 35.0%
CACGTTCTTTCTTTACTTTC+TGG + chr6_1:9468669-9468688 None:intergenic 35.0%
CAAACCATTCTGGATCTAAA+TGG - chr6_1:9468881-9468900 Msa0873860:CDS 35.0%
AGGGGATAAACTGAAAATCT+TGG + chr6_1:9468935-9468954 None:intergenic 35.0%
AGAATCTGTGTTAGTACTAG+GGG + chr6_1:9468953-9468972 None:intergenic 35.0%
TCTATATTAGGAGATGACAC+AGG + chr6_1:9469048-9469067 None:intergenic 35.0%
GTGTCATCTCCTAATATAGA+AGG - chr6_1:9469048-9469067 Msa0873860:CDS 35.0%
ACTATCGGTCCTTCTATATT+AGG + chr6_1:9469060-9469079 None:intergenic 35.0%
CGTTCTTGAAGAGTAACTAT+CGG + chr6_1:9469075-9469094 None:intergenic 35.0%
!! CAAACTTCTAAGATTGCTGA+AGG - chr6_1:9469471-9469490 Msa0873860:intron 35.0%
TAAGACGTAAGTTTAGTCTC+AGG - chr6_1:9469623-9469642 Msa0873860:intron 35.0%
AAGACGTAAGTTTAGTCTCA+GGG - chr6_1:9469624-9469643 Msa0873860:intron 35.0%
TATTGTATCAGTGTACACAC+TGG - chr6_1:9469684-9469703 Msa0873860:intron 35.0%
!! GTTTTTGCGGATTGTTTTCT+TGG - chr6_1:9469716-9469735 Msa0873860:intron 35.0%
TATGATCTGCGGAGAAAATA+TGG + chr6_1:9470193-9470212 None:intergenic 35.0%
ATAGGAACAGTTATGATCTG+CGG + chr6_1:9470204-9470223 None:intergenic 35.0%
AAATACGACAACACCTAATG+CGG + chr6_1:9470396-9470415 None:intergenic 35.0%
AACTAGATAACCAGGATTGA+GGG + chr6_1:9470570-9470589 None:intergenic 35.0%
AAACTAGATAACCAGGATTG+AGG + chr6_1:9470571-9470590 None:intergenic 35.0%
! TTATCTGAAGGAAGTGCATT+TGG - chr6_1:9470647-9470666 Msa0873860:intron 35.0%
ATCTTACTGTGTGTAATAGG+AGG - chr6_1:9470707-9470726 Msa0873860:intron 35.0%
GAGAAACTATTTAATGCAGG+AGG - chr6_1:9470748-9470767 Msa0873860:intron 35.0%
! TTAGCACCATGCATCATTTT+CGG - chr6_1:9470832-9470851 Msa0873860:intron 35.0%
!! TGACAGTTTTATGTTGACTG+TGG - chr6_1:9470908-9470927 Msa0873860:intron 35.0%
TTTGATCTCCACAGACTTTA+CGG + chr6_1:9471220-9471239 None:intergenic 35.0%
! TCAAAGATGATCGAGTTGTA+AGG - chr6_1:9471235-9471254 Msa0873860:intron 35.0%
! CAAAGATGATCGAGTTGTAA+GGG - chr6_1:9471236-9471255 Msa0873860:intron 35.0%
TTGTCATCAACATTGTCTCT+TGG + chr6_1:9471360-9471379 None:intergenic 35.0%
!! AGAGACAATGTTGATGACAA+TGG - chr6_1:9471360-9471379 Msa0873860:intron 35.0%
AGTCAATGACGTTGAAAATG+AGG - chr6_1:9471455-9471474 Msa0873860:intron 35.0%
TGGCTACTCTCCTATTTAAA+AGG + chr6_1:9471619-9471638 None:intergenic 35.0%
!! CAGTACATTTAATTTGCCAG+AGG + chr6_1:9471738-9471757 None:intergenic 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr6_1:9471811-9471830 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr6_1:9471812-9471831 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr6_1:9471825-9471844 None:intergenic 35.0%
GAAAATGAGTCAGTTATTCC+GGG - chr6_1:9471995-9472014 Msa0873860:five_prime_UTR 35.0%
! ATAGGTCGTGATTTTCTCTG+CGG + chr6_1:9463856-9463875 None:intergenic 40.0%
CAGAGAAAATCACGACCTAT+CGG - chr6_1:9463856-9463875 Msa0873860:intron 40.0%
GAATCAGTCAAAGAACCCAA+CGG + chr6_1:9463985-9464004 None:intergenic 40.0%
! TTGGGTTCTTTGACTGATTC+TGG - chr6_1:9463985-9464004 Msa0873860:three_prime_UTR 40.0%
GTTATGCTGAAGATTGGAAG+AGG - chr6_1:9464031-9464050 Msa0873860:three_prime_UTR 40.0%
TGGAAGAGGTTTAGAGAAGT+TGG - chr6_1:9464045-9464064 Msa0873860:three_prime_UTR 40.0%
TTGATGAAGCTGTGATGAAG+AGG - chr6_1:9464073-9464092 Msa0873860:three_prime_UTR 40.0%
GAAAGATGATGAAGCGATGT+TGG - chr6_1:9464095-9464114 Msa0873860:three_prime_UTR 40.0%
CGTTCAAAAACCAACTCATC+CGG + chr6_1:9464301-9464320 None:intergenic 40.0%
!!! CGGATGAGTTGGTTTTTGAA+CGG - chr6_1:9464299-9464318 Msa0873860:CDS 40.0%
!!! GGATGAGTTGGTTTTTGAAC+GGG - chr6_1:9464300-9464319 Msa0873860:CDS 40.0%
GAGCTATAAGTAGAGAGAGA+TGG - chr6_1:9464722-9464741 Msa0873860:intron 40.0%
GTAGAGAGAGATGGTATGAA+AGG - chr6_1:9464731-9464750 Msa0873860:intron 40.0%
GGATAATCGAGAGAACTCTT+TGG - chr6_1:9464960-9464979 Msa0873860:intron 40.0%
!! GTTGATCATAGGCTTTGAAC+TGG - chr6_1:9465468-9465487 Msa0873860:intron 40.0%
! TATCGATCCTGATGATGTCA+AGG + chr6_1:9465764-9465783 None:intergenic 40.0%
TTTGGAGGATACCGTACAAA+GGG - chr6_1:9465863-9465882 Msa0873860:intron 40.0%
!! CGTACAAAGGGCATTATACT+TGG - chr6_1:9465875-9465894 Msa0873860:intron 40.0%
CCAATTAATGGCAGTTTCCT+AGG + chr6_1:9466096-9466115 None:intergenic 40.0%
CCTAGGAAACTGCCATTAAT+TGG - chr6_1:9466093-9466112 Msa0873860:intron 40.0%
AAAGGGAAGATTTGAAGGAG+TGG - chr6_1:9466693-9466712 Msa0873860:CDS 40.0%
AAGGGAAGATTTGAAGGAGT+GGG - chr6_1:9466694-9466713 Msa0873860:CDS 40.0%
AGAGAGGATATGCTAAGTGA+TGG - chr6_1:9466734-9466753 Msa0873860:CDS 40.0%
AGGATATGCTAAGTGATGGT+AGG - chr6_1:9466738-9466757 Msa0873860:CDS 40.0%
AGATGTAGATGCAGAAGAGA+AGG - chr6_1:9466910-9466929 Msa0873860:CDS 40.0%
GGATTCTGCAAAGAAAATGC+TGG - chr6_1:9467042-9467061 Msa0873860:CDS 40.0%
! CCATAACAATGGACTTGGAT+TGG + chr6_1:9467178-9467197 None:intergenic 40.0%
CCAATCCAAGTCCATTGTTA+TGG - chr6_1:9467175-9467194 Msa0873860:CDS 40.0%
! CCAAACCATAACAATGGACT+TGG + chr6_1:9467183-9467202 None:intergenic 40.0%
CCAAGTCCATTGTTATGGTT+TGG - chr6_1:9467180-9467199 Msa0873860:CDS 40.0%
GCTACACCAAACCATAACAA+TGG + chr6_1:9467189-9467208 None:intergenic 40.0%
!! GGGGTGTTAATGAGTTGATT+TGG + chr6_1:9467280-9467299 None:intergenic 40.0%
TGATGAGCAAAAACGTACTC+TGG - chr6_1:9467580-9467599 Msa0873860:CDS 40.0%
TTCGATTTCCCTATACTCCA+AGG + chr6_1:9467687-9467706 None:intergenic 40.0%
GGAAATCGAAGTCAACCATA+GGG - chr6_1:9467697-9467716 Msa0873860:CDS 40.0%
! TTGCTCTTCTTTTCCAACCT+TGG + chr6_1:9467726-9467745 None:intergenic 40.0%
! AGGAGAAATTGCTTGCTGAT+CGG - chr6_1:9467867-9467886 Msa0873860:CDS 40.0%
GCTTCAAATTCTCAGTCTCT+TGG + chr6_1:9467967-9467986 None:intergenic 40.0%
TGAAGCTTACTCAAGATGAG+AGG - chr6_1:9467981-9468000 Msa0873860:CDS 40.0%
! AGAGCATTCTCGTTTGCAAT+TGG - chr6_1:9468006-9468025 Msa0873860:CDS 40.0%
TGAAGGAAGCTGAAAACTTG+AGG - chr6_1:9468077-9468096 Msa0873860:CDS 40.0%
GAAGGAAGCTGAAAACTTGA+GGG - chr6_1:9468078-9468097 Msa0873860:CDS 40.0%
GGCTTAGGTTTGAGAAAGAA+TGG - chr6_1:9468107-9468126 Msa0873860:CDS 40.0%
TGAGAAAGAATGGGAAGAAC+TGG - chr6_1:9468117-9468136 Msa0873860:CDS 40.0%
TGACATTAGTGCAGAACAAC+AGG - chr6_1:9468153-9468172 Msa0873860:CDS 40.0%
AGAACAACAGGAAGTTGAGA+AGG - chr6_1:9468165-9468184 Msa0873860:CDS 40.0%
TCAGAAAAGGAAAGAGGAGA+TGG - chr6_1:9468420-9468439 Msa0873860:intron 40.0%
! ATTTTCTCTCTCTTTCCTGC+AGG + chr6_1:9468453-9468472 None:intergenic 40.0%
GAGAAAATTTCAGGAGGAGA+TGG - chr6_1:9468465-9468484 Msa0873860:intron 40.0%
CTTGAAAGATGCTGCTGAAA+AGG - chr6_1:9468513-9468532 Msa0873860:intron 40.0%
AAGATGCTGCTGAAAAGGAA+TGG - chr6_1:9468518-9468537 Msa0873860:intron 40.0%
AGATGCTGCTGAAAAGGAAT+GGG - chr6_1:9468519-9468538 Msa0873860:intron 40.0%
AGGGGATCAGATTAGAGAAT+GGG - chr6_1:9468557-9468576 Msa0873860:intron 40.0%
AATCTTCATGCATCTCACGT+TGG + chr6_1:9468624-9468643 None:intergenic 40.0%
TCTCAACAAGTGCGAGAAAA+TGG + chr6_1:9468714-9468733 None:intergenic 40.0%
TTACCTGACAGTAAAGAGTG+TGG - chr6_1:9468796-9468815 Msa0873860:intron 40.0%
! TACCTGACAGTAAAGAGTGT+GGG - chr6_1:9468797-9468816 Msa0873860:intron 40.0%
TCAAGAGGAGATATAGGCAA+GGG + chr6_1:9468829-9468848 None:intergenic 40.0%
GAGTTCTCAAGAGGAGATAT+AGG + chr6_1:9468835-9468854 None:intergenic 40.0%
ATCTCCTCTTGAGAACTCAA+AGG - chr6_1:9468837-9468856 Msa0873860:CDS 40.0%
! TTGTCCTTTGAGTTCTCAAG+AGG + chr6_1:9468844-9468863 None:intergenic 40.0%
AAGGACAATGTTATCGCTTC+TGG - chr6_1:9468856-9468875 Msa0873860:CDS 40.0%
AAATCTTGGACGTGCATTTG+CGG + chr6_1:9468921-9468940 None:intergenic 40.0%
ATATTCAGTATTCCCCTCTC+TGG + chr6_1:9469163-9469182 None:intergenic 40.0%
CATGTAGCTGTGTTCATCTA+TGG + chr6_1:9469193-9469212 None:intergenic 40.0%
CATAGATGAACACAGCTACA+TGG - chr6_1:9469191-9469210 Msa0873860:intron 40.0%
AGCTACATGGAAAGTTTGAC+AGG - chr6_1:9469204-9469223 Msa0873860:intron 40.0%
GCTACATGGAAAGTTTGACA+GGG - chr6_1:9469205-9469224 Msa0873860:intron 40.0%
CTACATGGAAAGTTTGACAG+GGG - chr6_1:9469206-9469225 Msa0873860:CDS 40.0%
TACATGGAAAGTTTGACAGG+GGG - chr6_1:9469207-9469226 Msa0873860:CDS 40.0%
ACTGACTGTTGAGAATCATC+TGG + chr6_1:9469237-9469256 None:intergenic 40.0%
!! TTTGCAAACTCGTTTTTCCC+AGG + chr6_1:9469356-9469375 None:intergenic 40.0%
AAGCTACTGGTAACAGTACA+AGG - chr6_1:9469433-9469452 Msa0873860:CDS 40.0%
AGACGTAAGTTTAGTCTCAG+GGG - chr6_1:9469625-9469644 Msa0873860:intron 40.0%
CTGCGGAGAAAATATGGTTA+GGG + chr6_1:9470187-9470206 None:intergenic 40.0%
TCTGCGGAGAAAATATGGTT+AGG + chr6_1:9470188-9470207 None:intergenic 40.0%
AATCCAAACATACCCGCATT+AGG - chr6_1:9470380-9470399 Msa0873860:intron 40.0%
AATACGACAACACCTAATGC+GGG + chr6_1:9470395-9470414 None:intergenic 40.0%
ACTAGATAACCAGGATTGAG+GGG + chr6_1:9470569-9470588 None:intergenic 40.0%
!! AAGTGCATTTGGCTTTACTG+TGG - chr6_1:9470658-9470677 Msa0873860:intron 40.0%
TTTAATGCAGGAGGATGTCA+AGG - chr6_1:9470757-9470776 Msa0873860:intron 40.0%
TTAATGCAGGAGGATGTCAA+GGG - chr6_1:9470758-9470777 Msa0873860:intron 40.0%
! CGTTGGATAACTCCTGTTTT+AGG + chr6_1:9470938-9470957 None:intergenic 40.0%
ATTCTATCAAACGGCATCGT+TGG + chr6_1:9470955-9470974 None:intergenic 40.0%
GGAGTTATCCAACGAAACAA+AGG - chr6_1:9471083-9471102 Msa0873860:intron 40.0%
! TTCAAGAGCCTTTGTTTCGT+TGG + chr6_1:9471094-9471113 None:intergenic 40.0%
GCTCTTGAAAAAGAAGCTTC+TGG - chr6_1:9471105-9471124 Msa0873860:intron 40.0%
CTTGAAAAAGAAGCTTCTGG+TGG - chr6_1:9471108-9471127 Msa0873860:intron 40.0%
TAAAAACCCTGAAGTAGCAG+TGG - chr6_1:9471149-9471168 Msa0873860:intron 40.0%
GTGTAGCACTTTCTTCAATG+CGG + chr6_1:9471407-9471426 None:intergenic 40.0%
!! CATTGAAGAAAGTGCTACAC+TGG - chr6_1:9471407-9471426 Msa0873860:intron 40.0%
AAGATCTTCTTTCCGATACC+GGG + chr6_1:9471525-9471544 None:intergenic 40.0%
GAAGATCTTCTTTCCGATAC+CGG + chr6_1:9471526-9471545 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG - chr6_1:9471809-9471828 Msa0873860:CDS 40.0%
!! CACTCGATTTAGGGTTTTGC+CGG + chr6_1:9463770-9463789 None:intergenic 45.0%
! AACAGCTTTTCCCTTTGCGA+GGG + chr6_1:9463932-9463951 None:intergenic 45.0%
TGATTCTGGCGATGATGTTG+TGG - chr6_1:9463999-9464018 Msa0873860:three_prime_UTR 45.0%
GTTGGAGAAGATTTCGAGAC+TGG - chr6_1:9464113-9464132 Msa0873860:three_prime_UTR 45.0%
GATTTCGAGACTGGAGAAAG+AGG - chr6_1:9464122-9464141 Msa0873860:three_prime_UTR 45.0%
AGTCGAATACGGACACAACA+CGG - chr6_1:9464449-9464468 Msa0873860:intron 45.0%
TGGTATGAAAGGAGTGAGCT+AGG - chr6_1:9464742-9464761 Msa0873860:intron 45.0%
GGTATGAAAGGAGTGAGCTA+GGG - chr6_1:9464743-9464762 Msa0873860:intron 45.0%
AAATAACCCAGGCCCACAAA+AGG + chr6_1:9464789-9464808 None:intergenic 45.0%
AGTGGAGTTCCAAGTTCGAT+CGG - chr6_1:9465186-9465205 Msa0873860:intron 45.0%
GCAAGAACTAGCTGAAACTC+AGG - chr6_1:9465214-9465233 Msa0873860:intron 45.0%
AGAACTAGCTGAAACTCAGG+AGG - chr6_1:9465217-9465236 Msa0873860:intron 45.0%
! GTCTGAAGTCCAAAAACGAG+AGG - chr6_1:9465277-9465296 Msa0873860:intron 45.0%
CATCGTATATGCTGGAAGTC+TGG - chr6_1:9465717-9465736 Msa0873860:intron 45.0%
GTTTGGAGGATACCGTACAA+AGG - chr6_1:9465862-9465881 Msa0873860:intron 45.0%
ATGGGAAGAAGACTGGACTT+CGG + chr6_1:9466344-9466363 None:intergenic 45.0%
GCTTTGTATGGGAAGAAGAC+TGG + chr6_1:9466351-9466370 None:intergenic 45.0%
GGTGGATGGAATTGAAGAGA+AGG - chr6_1:9466390-9466409 Msa0873860:CDS 45.0%
AGATATGAAGTTGCGAGAGC+TGG - chr6_1:9466486-9466505 Msa0873860:CDS 45.0%
TTGTCAGTAGCTACCGAGTA+TGG - chr6_1:9466541-9466560 Msa0873860:CDS 45.0%
AAGATTTGAAGGAGTGGGAG+AGG - chr6_1:9466699-9466718 Msa0873860:CDS 45.0%
! GGAGAGAGATCTAGAAGTGT+TGG - chr6_1:9466820-9466839 Msa0873860:CDS 45.0%
AAAGTGTGAGTGCATGCACT+TGG - chr6_1:9467116-9467135 Msa0873860:CDS 45.0%
GCAGCAGTTTGAGCTTGAAA+TGG - chr6_1:9467613-9467632 Msa0873860:CDS 45.0%
GGGAAATCGAAGTCAACCAT+AGG - chr6_1:9467696-9467715 Msa0873860:CDS 45.0%
AGTCAACCATAGGGAAACCA+AGG - chr6_1:9467706-9467725 Msa0873860:CDS 45.0%
AACCATAGGGAAACCAAGGT+TGG - chr6_1:9467710-9467729 Msa0873860:CDS 45.0%
TTCCAACCTTGGTTTCCCTA+TGG + chr6_1:9467715-9467734 None:intergenic 45.0%
AAAAGAGAGAGAGCTGGAGA+AGG - chr6_1:9467841-9467860 Msa0873860:CDS 45.0%
CTGAAAACTTGAGGGATGAG+AGG - chr6_1:9468086-9468105 Msa0873860:CDS 45.0%
ACAGGAAGTTGAGAAGGAGA+AGG - chr6_1:9468171-9468190 Msa0873860:CDS 45.0%
GGAGCTCGAAAAGCTTGAAT+TGG - chr6_1:9468273-9468292 Msa0873860:intron 45.0%
ATGGGAAGAAGTCAAGTCTG+AGG - chr6_1:9468537-9468556 Msa0873860:intron 45.0%
TGGGAAGAAGTCAAGTCTGA+GGG - chr6_1:9468538-9468557 Msa0873860:intron 45.0%
GAGGGGATCAGATTAGAGAA+TGG - chr6_1:9468556-9468575 Msa0873860:intron 45.0%
TGAGAAGCTCAGGAATTGCA+AGG - chr6_1:9468729-9468748 Msa0873860:intron 45.0%
TCAGGAATTGCAAGGACTGT+GGG - chr6_1:9468737-9468756 Msa0873860:intron 45.0%
! ACCTGACAGTAAAGAGTGTG+GGG - chr6_1:9468798-9468817 Msa0873860:intron 45.0%
CTCAAGAGGAGATATAGGCA+AGG + chr6_1:9468830-9468849 None:intergenic 45.0%
CAGGCCATTTAGATCCAGAA+TGG + chr6_1:9468888-9468907 None:intergenic 45.0%
CAAGAACGACAGATAGCAGA+TGG - chr6_1:9469087-9469106 Msa0873860:intron 45.0%
! TGGCAATGTTATCGGATTGG+AGG + chr6_1:9469143-9469162 None:intergenic 45.0%
CTCTGGCAATGTTATCGGAT+TGG + chr6_1:9469146-9469165 None:intergenic 45.0%
ATCCGATAACATTGCCAGAG+AGG - chr6_1:9469146-9469165 Msa0873860:intron 45.0%
TCCGATAACATTGCCAGAGA+GGG - chr6_1:9469147-9469166 Msa0873860:intron 45.0%
TTCTCAACAGTCAGTCCCAA+AGG - chr6_1:9469242-9469261 Msa0873860:CDS 45.0%
GTCTTTGTCGACCAACCTTT+GGG + chr6_1:9469260-9469279 None:intergenic 45.0%
AGTAGCTTTCTCAGTGTGAC+TGG + chr6_1:9469421-9469440 None:intergenic 45.0%
AGTCACACTGAGAAAGCTAC+TGG - chr6_1:9469420-9469439 Msa0873860:CDS 45.0%
! CAGAATGCTGCTGATAGTGA+AGG - chr6_1:9469498-9469517 Msa0873860:intron 45.0%
CATTCAGACAGTACAACAGC+TGG - chr6_1:9469522-9469541 Msa0873860:intron 45.0%
! TTCTCCCCTGTAACTTGTGT+GGG + chr6_1:9469582-9469601 None:intergenic 45.0%
!! GAGCTTTATTGCCCCAAACA+AGG + chr6_1:9469651-9469670 None:intergenic 45.0%
TCTTATTGGGAAGAGGGGAA+CGG + chr6_1:9469872-9469891 None:intergenic 45.0%
GGTGCAATCAATGAGACGAT+TGG + chr6_1:9469917-9469936 None:intergenic 45.0%
TAGAAACTGAAAGGGGGCAA+CGG + chr6_1:9469947-9469966 None:intergenic 45.0%
TGAGGTGTGGATGTAGTTCT+AGG - chr6_1:9470118-9470137 Msa0873860:intron 45.0%
ACACCTAATGCGGGTATGTT+TGG + chr6_1:9470386-9470405 None:intergenic 45.0%
!! TGCATTTGGCTTTACTGTGG+TGG - chr6_1:9470661-9470680 Msa0873860:intron 45.0%
CCACAACCGAAAATGATGCA+TGG + chr6_1:9470841-9470860 None:intergenic 45.0%
! CCATGCATCATTTTCGGTTG+TGG - chr6_1:9470838-9470857 Msa0873860:intron 45.0%
! CATCATTTTCGGTTGTGGTC+TGG - chr6_1:9470843-9470862 Msa0873860:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr6_1:9471000-9471019 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr6_1:9471001-9471020 None:intergenic 45.0%
AGGCACAGTTTCATCAACAC+AGG - chr6_1:9471062-9471081 Msa0873860:intron 45.0%
AGAAGCTTCTGGTGGTAAAC+AGG - chr6_1:9471116-9471135 Msa0873860:intron 45.0%
GATCTCAACCGTAAAGTCTG+TGG - chr6_1:9471209-9471228 Msa0873860:intron 45.0%
!! GAAAGTGCTACACTGGAGTA+TGG - chr6_1:9471414-9471433 Msa0873860:intron 45.0%
CTGGAGTATGGAGATGAAGA+TGG - chr6_1:9471426-9471445 Msa0873860:intron 45.0%
TGACGTTGAAAATGAGGACG+AGG - chr6_1:9471461-9471480 Msa0873860:intron 45.0%
GACGTTGAAAATGAGGACGA+GGG - chr6_1:9471462-9471481 Msa0873860:intron 45.0%
ACGTTGAAAATGAGGACGAG+GGG - chr6_1:9471463-9471482 Msa0873860:intron 45.0%
AGATGAAGAGGAAGACGAAG+AGG - chr6_1:9471488-9471507 Msa0873860:intron 45.0%
TTGCCAGAGGACAGTCATAA+CGG + chr6_1:9471725-9471744 None:intergenic 45.0%
! AATGTACTGCTTAGGCACTG+AGG - chr6_1:9471749-9471768 Msa0873860:CDS 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr6_1:9471807-9471826 None:intergenic 45.0%
ATGAGTCAGTTATTCCGGGA+CGG - chr6_1:9471999-9472018 Msa0873860:five_prime_UTR 45.0%
ATTTATTACTCCCTCCGTCC+CGG + chr6_1:9472016-9472035 None:intergenic 45.0%
!! TAGAATAAAATTATATTATT+AGG + chr6_1:9467244-9467263 None:intergenic 5.0%
GTGATTGAACGGAGTTTCGC+CGG + chr6_1:9463817-9463836 None:intergenic 50.0%
GCGAAACTCCGTTCAATCAC+CGG - chr6_1:9463817-9463836 Msa0873860:intron 50.0%
! ACATTGCGCCGGTGATTGAA+CGG + chr6_1:9463828-9463847 None:intergenic 50.0%
ATCACGACCTATCGGTACAC+CGG - chr6_1:9463864-9463883 Msa0873860:intron 50.0%
! AATGATGCCGGTGTACCGAT+AGG + chr6_1:9463874-9463893 None:intergenic 50.0%
TCATTCACACCGCGTCGAAT+TGG - chr6_1:9463889-9463908 Msa0873860:intron 50.0%
! CAACAGCTTTTCCCTTTGCG+AGG + chr6_1:9463933-9463952 None:intergenic 50.0%
TCAGTCAAAGAACCCAACGG+CGG + chr6_1:9463982-9464001 None:intergenic 50.0%
TTCTGGCGATGATGTTGTGG+TGG - chr6_1:9464002-9464021 Msa0873860:three_prime_UTR 50.0%
! GAATTGGTCTCCGGATGAGT+TGG - chr6_1:9464288-9464307 Msa0873860:CDS 50.0%
CGGAACTAGGAAACGTACAC+AGG - chr6_1:9464700-9464719 Msa0873860:intron 50.0%
AGGAGTGAGCTAGGGAATTG+AGG - chr6_1:9464751-9464770 Msa0873860:intron 50.0%
GGAGTGAGCTAGGGAATTGA+GGG - chr6_1:9464752-9464771 Msa0873860:intron 50.0%
GAGTGAGCTAGGGAATTGAG+GGG - chr6_1:9464753-9464772 Msa0873860:intron 50.0%
! GGAGAGACCATGCCTTTTGT+GGG - chr6_1:9464774-9464793 Msa0873860:intron 50.0%
! AGAGTACCACTCAGCTCCTT+TGG - chr6_1:9465596-9465615 Msa0873860:intron 50.0%
GAGTACCACTCAGCTCCTTT+GGG - chr6_1:9465597-9465616 Msa0873860:intron 50.0%
CAAAACCCAAAGGAGCTGAG+TGG + chr6_1:9465605-9465624 None:intergenic 50.0%
AACTGCATGATGCAGAAGCC+AGG - chr6_1:9466431-9466450 Msa0873860:CDS 50.0%
TATGAAGTTGCGAGAGCTGG+AGG - chr6_1:9466489-9466508 Msa0873860:CDS 50.0%
GCATGCACTCACACTTTCTC+TGG + chr6_1:9467113-9467132 None:intergenic 50.0%
!! ACCTCAAAGGTACTAGGCAG+GGG + chr6_1:9467299-9467318 None:intergenic 50.0%
!! GACCTCAAAGGTACTAGGCA+GGG + chr6_1:9467300-9467319 None:intergenic 50.0%
!! TGACCTCAAAGGTACTAGGC+AGG + chr6_1:9467301-9467320 None:intergenic 50.0%
AAAGCGGAAATCTCTCGCTG+AGG - chr6_1:9467640-9467659 Msa0873860:CDS 50.0%
TGAGGAGTTTAGCAGCAAGG+AGG - chr6_1:9467658-9467677 Msa0873860:CDS 50.0%
GAGAGAGCTGGAGAAGGAAA+AGG - chr6_1:9467847-9467866 Msa0873860:CDS 50.0%
! GCTTGCTGATCGGAAGAGTT+TGG - chr6_1:9467877-9467896 Msa0873860:CDS 50.0%
ACTTGAGGGATGAGAGGCTT+AGG - chr6_1:9468092-9468111 Msa0873860:CDS 50.0%
GGGAAGAAGTCAAGTCTGAG+GGG - chr6_1:9468539-9468558 Msa0873860:intron 50.0%
! TCGCACTTGTTGAGAAGCTC+AGG - chr6_1:9468719-9468738 Msa0873860:intron 50.0%
CTCAGGAATTGCAAGGACTG+TGG - chr6_1:9468736-9468755 Msa0873860:intron 50.0%
CAGGAATTGCAAGGACTGTG+GGG - chr6_1:9468738-9468757 Msa0873860:intron 50.0%
ACCCCACACTCTTTACTGTC+AGG + chr6_1:9468802-9468821 None:intergenic 50.0%
!! GCTTCTGGCTCAAACCATTC+TGG - chr6_1:9468871-9468890 Msa0873860:CDS 50.0%
CATTTGCGGAACACAGACAC+AGG + chr6_1:9468907-9468926 None:intergenic 50.0%
ACGACAGATAGCAGATGGAG+TGG - chr6_1:9469092-9469111 Msa0873860:intron 50.0%
CCCCTCTCTGGCAATGTTAT+CGG + chr6_1:9469151-9469170 None:intergenic 50.0%
CCGATAACATTGCCAGAGAG+GGG - chr6_1:9469148-9469167 Msa0873860:intron 50.0%
ATGGAAAGTTTGACAGGGGG+AGG - chr6_1:9469210-9469229 Msa0873860:CDS 50.0%
CAACAGTCAGTCCCAAAGGT+TGG - chr6_1:9469246-9469265 Msa0873860:CDS 50.0%
GGTCTTTGTCGACCAACCTT+TGG + chr6_1:9469261-9469280 None:intergenic 50.0%
! AAGGTTGGTCGACAAAGACC+TGG - chr6_1:9469261-9469280 Msa0873860:CDS 50.0%
! AGGTTGGTCGACAAAGACCT+GGG - chr6_1:9469262-9469281 Msa0873860:CDS 50.0%
!! CCAGATTTGCTTTTCCTCCC+AGG + chr6_1:9469282-9469301 None:intergenic 50.0%
CCTGGGAGGAAAAGCAAATC+TGG - chr6_1:9469279-9469298 Msa0873860:CDS 50.0%
TGCTAGAACACGCTCAGTGA+AGG - chr6_1:9469305-9469324 Msa0873860:CDS 50.0%
CTCAGTGAAGGCTGTGGTTA+AGG - chr6_1:9469317-9469336 Msa0873860:CDS 50.0%
AGTGAAGGCTGTGGTTAAGG+AGG - chr6_1:9469320-9469339 Msa0873860:CDS 50.0%
! CGTTTTTCCCAGGAACTCCT+TGG + chr6_1:9469346-9469365 None:intergenic 50.0%
TCAGACAGTACAACAGCTGG+TGG - chr6_1:9469525-9469544 Msa0873860:intron 50.0%
CAGACAGTACAACAGCTGGT+GGG - chr6_1:9469526-9469545 Msa0873860:intron 50.0%
CTCCACCCACACAAGTTACA+GGG - chr6_1:9469574-9469593 Msa0873860:intron 50.0%
TCCACCCACACAAGTTACAG+GGG - chr6_1:9469575-9469594 Msa0873860:intron 50.0%
! CTTCTCCCCTGTAACTTGTG+TGG + chr6_1:9469583-9469602 None:intergenic 50.0%
!! AGAAGCGTTACAACCTCAGG+CGG - chr6_1:9469598-9469617 Msa0873860:intron 50.0%
!! TTAGTCTCAGGGGCCTTGTT+TGG - chr6_1:9469635-9469654 Msa0873860:intron 50.0%
!! TAGTCTCAGGGGCCTTGTTT+GGG - chr6_1:9469636-9469655 Msa0873860:intron 50.0%
CTTATTGGGAAGAGGGGAAC+GGG + chr6_1:9469871-9469890 None:intergenic 50.0%
AGAAACTGAAAGGGGGCAAC+GGG + chr6_1:9469946-9469965 None:intergenic 50.0%
TAATTGCAGCCCCTCAATCC+TGG - chr6_1:9470557-9470576 Msa0873860:CDS 50.0%
! GACTGTGGACTGCCTAAAAC+AGG - chr6_1:9470923-9470942 Msa0873860:intron 50.0%
TTGAGCTGACCCCACTTAGT+GGG - chr6_1:9470988-9471007 Msa0873860:intron 50.0%
TGACCCCACTTAGTGGGATA+AGG - chr6_1:9470994-9471013 Msa0873860:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr6_1:9471002-9471021 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr6_1:9470999-9471018 Msa0873860:intron 50.0%
TGTCTTCCTTTGAGCAGTGC+AGG - chr6_1:9471042-9471061 Msa0873860:intron 50.0%
AGCTTCTGGTGGTAAACAGG+AGG - chr6_1:9471119-9471138 Msa0873860:intron 50.0%
! CAGCTACCACTGCTACTTCA+GGG + chr6_1:9471158-9471177 None:intergenic 50.0%
! TCAGCTACCACTGCTACTTC+AGG + chr6_1:9471159-9471178 None:intergenic 50.0%
TCTGCACTAGAGTCGTGGTT+TGG + chr6_1:9471191-9471210 None:intergenic 50.0%
TGAGATCTGCACTAGAGTCG+TGG + chr6_1:9471196-9471215 None:intergenic 50.0%
!! TGGTGCTACAACCAACTCTG+TGG - chr6_1:9471380-9471399 Msa0873860:intron 50.0%
TTCAATGCGGTCCACAGAGT+TGG + chr6_1:9471394-9471413 None:intergenic 50.0%
CGTTGAAAATGAGGACGAGG+GGG - chr6_1:9471464-9471483 Msa0873860:intron 50.0%
TGAAGAGGAAGACGAAGAGG+AGG - chr6_1:9471491-9471510 Msa0873860:intron 50.0%
TGTCCGTTATGACTGTCCTC+TGG - chr6_1:9471719-9471738 Msa0873860:CDS 50.0%
AATGGATACTACCTCCGTCC+CGG - chr6_1:9471790-9471809 Msa0873860:CDS 50.0%
ACCTAAGTCTGCCCTCGCAA+AGG - chr6_1:9463918-9463937 Msa0873860:intron 55.0%
CCTAAGTCTGCCCTCGCAAA+GGG - chr6_1:9463919-9463938 Msa0873860:intron 55.0%
! GGGAGAGACCATGCCTTTTG+TGG - chr6_1:9464773-9464792 Msa0873860:intron 55.0%
! ACCATGCCTTTTGTGGGCCT+GGG - chr6_1:9464780-9464799 Msa0873860:intron 55.0%
GTTCCAAGTTCGATCGGCTG+AGG - chr6_1:9465192-9465211 Msa0873860:intron 55.0%
TTGCCTCAGCCGATCGAACT+TGG + chr6_1:9465198-9465217 None:intergenic 55.0%
CCTGTTTACCTCAGCAAGCC+TGG + chr6_1:9466452-9466471 None:intergenic 55.0%
!! CCAGGCTTGCTGAGGTAAAC+AGG - chr6_1:9466449-9466468 Msa0873860:CDS 55.0%
AGGAGTGGGAGAGGAAGCTA+CGG - chr6_1:9466708-9466727 Msa0873860:CDS 55.0%
GAGGAAGCTACGGCAAAGAG+AGG - chr6_1:9466718-9466737 Msa0873860:CDS 55.0%
ACCCCTGCCTAGTACCTTTG+AGG - chr6_1:9467295-9467314 Msa0873860:CDS 55.0%
CGCTGAGGAGTTTAGCAGCA+AGG - chr6_1:9467655-9467674 Msa0873860:CDS 55.0%
GGAGTTTAGCAGCAAGGAGG+AGG - chr6_1:9467661-9467680 Msa0873860:CDS 55.0%
AGGAGGAGGCCTTGGAGTAT+AGG - chr6_1:9467675-9467694 Msa0873860:CDS 55.0%
GGAGGAGGCCTTGGAGTATA+GGG - chr6_1:9467676-9467695 Msa0873860:CDS 55.0%
GGAGATGGAGAAAGACCTGC+AGG - chr6_1:9468435-9468454 Msa0873860:intron 55.0%
AGGACTGTGGGGAAGTTGTC+AGG - chr6_1:9468749-9468768 Msa0873860:intron 55.0%
GGACTGTGGGGAAGTTGTCA+GGG - chr6_1:9468750-9468769 Msa0873860:intron 55.0%
TTGGTCGACAAAGACCTGGG+AGG - chr6_1:9469265-9469284 Msa0873860:CDS 55.0%
AACACGCTCAGTGAAGGCTG+TGG - chr6_1:9469311-9469330 Msa0873860:CDS 55.0%
TAAGGAGGCCAAGGAGTTCC+TGG - chr6_1:9469335-9469354 Msa0873860:CDS 55.0%
AAGGAGGCCAAGGAGTTCCT+GGG - chr6_1:9469336-9469355 Msa0873860:CDS 55.0%
! CTGGTGGGCGCAAGAAGAAA+AGG - chr6_1:9469541-9469560 Msa0873860:intron 55.0%
GCTCCACCCACACAAGTTAC+AGG - chr6_1:9469573-9469592 Msa0873860:intron 55.0%
! TCCCCTGTAACTTGTGTGGG+TGG + chr6_1:9469579-9469598 None:intergenic 55.0%
!! GGGAGAAGCGTTACAACCTC+AGG - chr6_1:9469595-9469614 Msa0873860:intron 55.0%
CTTACGTCTTATGCCGCCTG+AGG + chr6_1:9469614-9469633 None:intergenic 55.0%
!! AGTCTCAGGGGCCTTGTTTG+GGG - chr6_1:9469637-9469656 Msa0873860:intron 55.0%
AAAGGGGGCAACGGGACAAT+TGG + chr6_1:9469938-9469957 None:intergenic 55.0%
AGTGGGGTCAGCTCAAGGAA+AGG + chr6_1:9470984-9471003 None:intergenic 55.0%
CACTAAGTGGGGTCAGCTCA+AGG + chr6_1:9470989-9471008 None:intergenic 55.0%
CTTGAGCTGACCCCACTTAG+TGG - chr6_1:9470987-9471006 Msa0873860:intron 55.0%
ACTGTGCCTGCACTGCTCAA+AGG + chr6_1:9471051-9471070 None:intergenic 55.0%
TCTGGTGGTAAACAGGAGGC+AGG - chr6_1:9471123-9471142 Msa0873860:intron 55.0%
AGAGGAAGACGAAGAGGAGG+AGG - chr6_1:9471494-9471513 Msa0873860:intron 55.0%
GGTCAATTATACCGGGACGG+AGG + chr6_1:9471804-9471823 None:intergenic 55.0%
AGTCAGTTATTCCGGGACGG+AGG - chr6_1:9472002-9472021 Msa0873860:five_prime_UTR 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr6_1:9472003-9472022 Msa0873860:five_prime_UTR 55.0%
CGACGCGGTGTGAATGATGC+CGG + chr6_1:9463886-9463905 None:intergenic 60.0%
GGTGTGGCACCAATTCGACG+CGG + chr6_1:9463901-9463920 None:intergenic 60.0%
TGCGAGGGCAGACTTAGGTG+TGG + chr6_1:9463917-9463936 None:intergenic 60.0%
CCCTTTGCGAGGGCAGACTT+AGG + chr6_1:9463922-9463941 None:intergenic 60.0%
GTCAAAGAACCCAACGGCGG+CGG + chr6_1:9463979-9463998 None:intergenic 60.0%
! GACCATGCCTTTTGTGGGCC+TGG - chr6_1:9464779-9464798 Msa0873860:intron 60.0%
ACCCAGGCCCACAAAAGGCA+TGG + chr6_1:9464784-9464803 None:intergenic 60.0%
!! TGCAGAAGCCAGGCTTGCTG+AGG - chr6_1:9466441-9466460 Msa0873860:CDS 60.0%
TAGCAGCAAGGAGGAGGCCT+TGG - chr6_1:9467667-9467686 Msa0873860:CDS 60.0%
GGCTGTGGTTAAGGAGGCCA+AGG - chr6_1:9469326-9469345 Msa0873860:CDS 60.0%
GGACGAGGGGGAAGATGAAG+AGG - chr6_1:9471476-9471495 Msa0873860:intron 60.0%
GGAAGACGAAGAGGAGGAGG+AGG - chr6_1:9471497-9471516 Msa0873860:intron 60.0%
GAAGAGGAGGAGGAGGATCC+CGG - chr6_1:9471504-9471523 Msa0873860:intron 60.0%
GAGGAGGAGGATCCCGGTAT+CGG - chr6_1:9471510-9471529 Msa0873860:intron 60.0%
CTGCGGCGTGAACATTGCGC+CGG + chr6_1:9463839-9463858 None:intergenic 65.0%
CGGCGGAGGAGGAGGTTCAT+CGG + chr6_1:9463962-9463981 None:intergenic 65.0%
AAAGAACCCAACGGCGGCGG+AGG + chr6_1:9463976-9463995 None:intergenic 65.0%
ACCTCCTCCTCCGCCGCCGT+TGG - chr6_1:9463966-9463985 Msa0873860:intron 75.0%
CCTCCTCCTCCGCCGCCGTT+GGG - chr6_1:9463967-9463986 Msa0873860:intron 75.0%
GAACCCAACGGCGGCGGAGG+AGG + chr6_1:9463973-9463992 None:intergenic 75.0%
! CCCAACGGCGGCGGAGGAGG+AGG + chr6_1:9463970-9463989 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 9463701 9472062 9463701 ID=Msa0873860;Name=Msa0873860
chr6_1 mRNA 9463701 9472062 9463701 ID=Msa0873860-mRNA-1;Parent=Msa0873860;Name=Msa0873860-mRNA-1;_AED=0.08;_eAED=0.08;_QI=143|1|1|1|0.87|0.77|9|268|1200
chr6_1 exon 9463701 9463739 9463701 ID=Msa0873860-mRNA-1:exon:2890;Parent=Msa0873860-mRNA-1
chr6_1 exon 9463971 9464415 9463971 ID=Msa0873860-mRNA-1:exon:2889;Parent=Msa0873860-mRNA-1
chr6_1 exon 9464506 9464704 9464506 ID=Msa0873860-mRNA-1:exon:2888;Parent=Msa0873860-mRNA-1
chr6_1 exon 9466135 9468203 9466135 ID=Msa0873860-mRNA-1:exon:2887;Parent=Msa0873860-mRNA-1
chr6_1 exon 9468643 9468726 9468643 ID=Msa0873860-mRNA-1:exon:2886;Parent=Msa0873860-mRNA-1
chr6_1 exon 9468832 9469102 9468832 ID=Msa0873860-mRNA-1:exon:2885;Parent=Msa0873860-mRNA-1
chr6_1 exon 9469206 9469459 9469206 ID=Msa0873860-mRNA-1:exon:2884;Parent=Msa0873860-mRNA-1
chr6_1 exon 9470417 9470626 9470417 ID=Msa0873860-mRNA-1:exon:2883;Parent=Msa0873860-mRNA-1
chr6_1 exon 9471620 9472062 9471620 ID=Msa0873860-mRNA-1:exon:2882;Parent=Msa0873860-mRNA-1
chr6_1 five_prime_UTR 9471920 9472062 9471920 ID=Msa0873860-mRNA-1:five_prime_utr;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9471620 9471919 9471620 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9470417 9470626 9470417 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9469206 9469459 9469206 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9468832 9469102 9468832 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9468643 9468726 9468643 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9466135 9468203 9466135 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9464506 9464704 9464506 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 CDS 9464200 9464415 9464200 ID=Msa0873860-mRNA-1:cds;Parent=Msa0873860-mRNA-1
chr6_1 three_prime_UTR 9463971 9464199 9463971 ID=Msa0873860-mRNA-1:three_prime_utr;Parent=Msa0873860-mRNA-1
chr6_1 three_prime_UTR 9463701 9463739 9463701 ID=Msa0873860-mRNA-1:three_prime_utr;Parent=Msa0873860-mRNA-1
Gene Sequence

>Msa0873860

ATGTTCACGCCGCAGAGAAAATCACGACCTATCGGTACACCGGCATCATTCACACCGCGTCGAATTGGTGCCACACCTAAGTCTGCCCTCGCAAAGGGAAAAGCTGTTGTCATCGCCGATGAACCTCCTCCTCCGCCGCCGTTGGGTTCTTTGACTGATTCTGGCGATGATGTTGTGGTGGCTTCTAGTTATGCTGAAGATTGGAAGAGGTTTAGAGAAGTTGGATTACTTGATGAAGCTGTGATGAAGAGGAAAGATGATGAAGCGATGTTGGAGAAGATTTCGAGACTGGAGAAAGAGCTTTATGATTATCAGTACAACATGGGTCTCCTTCTTATTGAGAAGCAAGAGTGGAGTTCCAAGTTCGATCGGCTGAGGCAAGAACTAGCTGAAACTCAGGAGGTTCTAAAACGAGATCAATCATCGCATTTGATTGCATTGTCTGAAGTCCAAAAACGAGAGGAAAATTTGAGGAAAGCTTTGAGTTTAGAAAAGCAGTGTGGAGCTGATCTTGAGAGAGCTTTGCGTGCAATGCAAGAAGAGCTTGCCGAAGTCCAGTCTTCTTCCCATACAAAGCTAGATAAAGCAAATGAATTGGTGGATGGAATTGAAGAGAAGGCTTCAACAGTTAACAAGAAACTGCATGATGCAGAAGCCAGGCTTGCTGAGGTAAACAGGAAAAATACAGAGCTAGATATGAAGTTGCGAGAGCTGGAGGTTCGTGAAAGTTTGCTTCAAAAGGAGCGGTTGTCAGTAGCTACCGATCGAGAATCGTTTGAATCAGTATTCTATAAACAAAGGGAAGATTTGAAGGAGTGGGAGAGGAAGCTACGGCAAAGAGAGGATATGCTAAGTGATGGTAGGCAAAATTTTGGTGAGAAAGAAAAGAATGTGACTGAAACAGAAAAAAAGCTGAAGCAGAAGGAGAGAGATCTAGAAGTGTTGGAGAAGAATATTAACTCATCTAATTCTTTATTAAAAGAAAAGGAAGCTGAGATGAGTAGAAGAGTAGCAGATGTAGATGCAGAAGAGAAGAAAGTGGATTCTGCAAAGAAAATGCTGGATATTAAAGAGAAAGAATTACATGAACTGGAACTAAAGCTTAGTGCCAGAGAAAGTGAAGGGATCCAGAAACTTCTTGATGAGCAAAAACGTACTCTGGATTTAAAGTTGCAGCAGTTTGAGCTTGAAATGGAACAAAAGCGGAAATCTCTCGCTGAGGAGTTTAGCAGCAAGGAGGAGGCCTTGGAGTATAGGGAAATCGAAGTCAACCATAGGGAAACCAAGGTTGGAAAAGAAGAGCAAGCTTTGAGTACGAAGTCTGAGAGAATAAAGGAGCAAGATAAGGAACTTTTAACAAAGTTGAAATCATTGAAGGAGGAAGAAAAGACTATGAAAATAAAAGAGAGAGAGCTGGAGAAGGAAAAGGAGAAATTGCTTGCTGATCGGAAGAGTTTGGAGAATTTAAATGCTGAACTTGGGAAGCTTAAAGCTGAGATTTCTCAGCAGAAGCTGCAAATATGCCAAGAGACTGAGAATTTGAAGCTTACTCAAGATGAGAGGTCAGAGCATTCTCGTTTGCAATTGGAACTAAAGCAGGAGATAGAGCATACGAGAACGCAGAAAGATTTAATTATGAAGGAAGCTGAAAACTTGAGGGATGAGAGGCTTAGGTTTGAGAAAGAATGGGAAGAACTGGATAAGAAAAGAGCTGACATTAGTGCAGAACAACAGGAAGTTGAGAAGGAGAAGGAAAAGTTAAGAAAACTGAAGAACAGTGAAGAAGAAAGGTTGAAAAGAGAGAAGCAAGATATGGAAGATAATTTAAAGAAGGAGCTCGAAAAGCTTGAATTGGATAAGAAATCATTTAGTGATTCAATTAAACAAGAGGAATTTCTTTTATCTGAAAAGGTAAAAAATGAAAAGGCACAAATGGTTCAAGATTTTGAATGGAAAACAAGAAATCTTGAGAATGAAATTCAGAAAAGGAAAGAGGAGATGGAGAAAGACCTGCAGGAAAGAGAGAGAAAATTTCAGGAGGAGATGGAAAAAGAGCTTAATAATATTAATATCTTGAAAGATGCTGCTGAAAAGGAATGGGAAGAAGTCAAGTCTGAGGGGATCAGATTAGAGAATGGGAGAAAAGAACTTGAGACAAACAAGCAACAGCTGAAGTCTGACCAACGTGAGATGCATGAAGATTCTGAAATGCTTATGAATCTTAGCCAGAAAGTAAAGAAAGAACGTGAACGCCTTGTGGCTGAAAGAAACCATTTTCTCGCACTTGTTGAGAAGCTCAGGAATTGCAAGGACTGTGGGGAAGTTGTCAGGGACGTTGTTGTGTCTGATCTTCAGTTACCTGACAGTAAAGAGTGTGGGGTTCTTCCCTTGCCTATATCTCCTCTTGAGAACTCAAAGGACAATGTTATCGCTTCTGGCTCAAACCATTCTGGATCTAAATGGCCTGTGTCTGTGTTCCGCAAATGCACGTCCAAGATTTTCAGTTTATCCCCTAGTACTAACACAGATTCTATTGGTACTTCAAATATAGCTGGGACGTCCCCTGAGTTTGATGTAAATGTTAATATAGAAAAAGTAGGAGAGCCTGTGTCATCTCCTAATATAGAAGGACCGATAGTTACTCTTCAAGAACGACAGATAGCAGATGGAGTGGCTTTTCACTCTTCTGATACAGCACACCTCCAATCCGATAACATTGCCAGAGAGGGGAATACTGAATATTCTTTATCCATAGATGAACACAGCTACATGGAAAGTTTGACAGGGGGAGGTCCAGATGATTCTCAACAGTCAGTCCCAAAGGTTGGTCGACAAAGACCTGGGAGGAAAAGCAAATCTGGAATTGCTAGAACACGCTCAGTGAAGGCTGTGGTTAAGGAGGCCAAGGAGTTCCTGGGAAAAACGAGTTTGCAAAATCTTGATACTGATCATATCAAAGAAAATAGTCATGAAGAGTCCAGTCACACTGAGAAAGCTACTGGTAACAGTACAAGGAAGCGACAACGTGCACAAACTTCTAAGATTGCTGAAGGTGAGCAGAATGCTGCTGATAGTGAAGGACATTCAGACAGTACAACAGCTGGTGGGCGCAAGAAGAAAAGGTCAACAGTTGCTCCACCCACACAAGTTACAGGGGAGAAGCGTTACAACCTCAGGCGGCATAAGACTGCAGGCACAGTTTCATCAACACAGGAGTTATCCAACGAAACAAAGGCTCTTGAAAAAGAAGCTTCTGGTGGTAAACAGGAGGCAGGTGATAAAAACCCTGAAGTAGCAGTGGTAGCTGATGACAATATCCAAACCACGACTCTAGTGCAGATCTCAACCGTAAAGTCTGTGGAGATCAAAGATGATCGAGTTGTAAGGTTTGAAATACCAAGAGACAATGTTGATGACAATGGTGCTACAACCAACTCTGTGGACCGCATTGAAGAAAGTGCTACACTGGAGTATGGAGATGAAGATGGAAGCATAGTCAATGACGTTGAAAATGAGGACGAGGGGGAAGATGAAGAGGAAGACGAAGAGGAGGAGGAGGATCCCGGTATCGGAAAGAAGATCTTCAAATTTTTCACAACATGA
Protein sequence

>Msa0873860

MFTPQRKSRPIGTPASFTPRRIGATPKSALAKGKAVVIADEPPPPPPLGSLTDSGDDVVVASSYAEDWKRFREVGLLDEAVMKRKDDEAMLEKISRLEKELYDYQYNMGLLLIEKQEWSSKFDRLRQELAETQEVLKRDQSSHLIALSEVQKREENLRKALSLEKQCGADLERALRAMQEELAEVQSSSHTKLDKANELVDGIEEKASTVNKKLHDAEARLAEVNRKNTELDMKLRELEVRESLLQKERLSVATDRESFESVFYKQREDLKEWERKLRQREDMLSDGRQNFGEKEKNVTETEKKLKQKERDLEVLEKNINSSNSLLKEKEAEMSRRVADVDAEEKKVDSAKKMLDIKEKELHELELKLSARESEGIQKLLDEQKRTLDLKLQQFELEMEQKRKSLAEEFSSKEEALEYREIEVNHRETKVGKEEQALSTKSERIKEQDKELLTKLKSLKEEEKTMKIKERELEKEKEKLLADRKSLENLNAELGKLKAEISQQKLQICQETENLKLTQDERSEHSRLQLELKQEIEHTRTQKDLIMKEAENLRDERLRFEKEWEELDKKRADISAEQQEVEKEKEKLRKLKNSEEERLKREKQDMEDNLKKELEKLELDKKSFSDSIKQEEFLLSEKVKNEKAQMVQDFEWKTRNLENEIQKRKEEMEKDLQERERKFQEEMEKELNNINILKDAAEKEWEEVKSEGIRLENGRKELETNKQQLKSDQREMHEDSEMLMNLSQKVKKERERLVAERNHFLALVEKLRNCKDCGEVVRDVVVSDLQLPDSKECGVLPLPISPLENSKDNVIASGSNHSGSKWPVSVFRKCTSKIFSLSPSTNTDSIGTSNIAGTSPEFDVNVNIEKVGEPVSSPNIEGPIVTLQERQIADGVAFHSSDTAHLQSDNIAREGNTEYSLSIDEHSYMESLTGGGPDDSQQSVPKVGRQRPGRKSKSGIARTRSVKAVVKEAKEFLGKTSLQNLDTDHIKENSHEESSHTEKATGNSTRKRQRAQTSKIAEGEQNAADSEGHSDSTTAGGRKKKRSTVAPPTQVTGEKRYNLRRHKTAGTVSSTQELSNETKALEKEASGGKQEAGDKNPEVAVVADDNIQTTTLVQISTVKSVEIKDDRVVRFEIPRDNVDDNGATTNSVDRIEESATLEYGDEDGSIVNDVENEDEGEDEEEDEEEEEDPGIGKKIFKFFTT*