AlfalfaGEDB | Msa1454130

M. sativa cultivar zhongmu-4 / Msa1454130

KEGG: K12120
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
PFAM: PF08446.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1454130	sp\|P93673\|PHYA_LATSA	95.107	1124	55	0	1	1124	1	1124	0.0	2230

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1454130	G7IAE4	99.644	1124	4	0	1	1124	48	1171	0.0	2333

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036880	Msa1454130	0.977107	4.004240e-143	-8.615850e-47
Msa0081100	Msa1454130	0.981534	7.998786e-153	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1454130	MtrunA17_Chr1g0193441	99.644	1124	4	0	1	1124	1	1124	2330
Msa1454130	MtrunA17_Chr2g0294361	52.394	1128	519	9	2	1121	29	1146	1197
Msa1454130	MtrunA17_Chr2g0303971	47.500	1120	545	14	7	1116	16	1102	1056

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1454130	AT1G09570.3	79.055	1122	234	1	1	1121	5	1126	1866
Msa1454130	AT1G09570.4	79.055	1122	234	1	1	1121	1	1122	1865
Msa1454130	AT1G09570.5	79.055	1122	234	1	1	1121	1	1122	1865
Msa1454130	AT1G09570.1	79.055	1122	234	1	1	1121	1	1122	1865
Msa1454130	AT1G09570.6	79.055	1122	234	1	1	1121	1	1122	1865
Msa1454130	AT1G09570.2	79.290	1014	209	1	109	1121	1	1014	1702
Msa1454130	AT5G35840.1	52.065	1114	517	9	9	1116	6	1108	1189
Msa1454130	AT2G18790.1	51.553	1127	520	9	9	1121	40	1154	1189
Msa1454130	AT4G16250.1	51.204	1121	523	8	8	1116	45	1153	1180
Msa1454130	AT2G18790.2	52.547	1060	477	9	9	1054	40	1087	1139

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Find 326 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTAATGATACTGTATG+TGG	0.551063	tig0035057:+15352	Msa1454130:CDS
AAAGCATGAACCTGGCGAAC+AGG	0.454684	tig0035057:+15459	Msa1454130:CDS
AAAGCCTTGAATGATGATCT+TGG	0.496392	tig0035057:-15502	None:intergenic
AAAGCTAGCAAGCAACCAAA+AGG	0.534264	tig0035057:-14101	None:intergenic
AAAGCTATCTCTCTTATCTG+AGG	0.636818	tig0035057:-15250	None:intergenic
AAAGGCACTAGGATTTGCGG+AGG	0.682229	tig0035057:+14283	Msa1454130:CDS
AAAGTCAATGATCAAACTAC+CGG	0.582203	tig0035057:-14381	None:intergenic
AAATATCTAATTTGGGCAAG+TGG	0.485059	tig0035057:-12790	None:intergenic
AAATCAGGAATCCTTTGTCT+GGG	0.547598	tig0035057:+16684	Msa1454130:CDS
AAATTTCACGAGGATGATCA+TGG	0.465494	tig0035057:+14584	Msa1454130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATCTAATTTGGGCAAGT+GGG	-	tig0035057:12792-12811	None:intergenic	30.0%
AAATATCTAATTTGGGCAAG+TGG	-	tig0035057:12793-12812	None:intergenic	30.0%
AAGAGTAAGTAGTACAAGAA+AGG	-	tig0035057:13221-13240	None:intergenic	30.0%
CTTGTTGGAAGGAAAAAATT+TGG	-	tig0035057:13253-13272	None:intergenic	30.0%
TAACAAGTAACTAACCTTGT+TGG	-	tig0035057:13268-13287	None:intergenic	30.0%
TACCTCAATACAATACAAAG+AGG	+	tig0035057:14065-14084	Msa1454130:CDS	30.0%
AAAGTCAATGATCAAACTAC+CGG	-	tig0035057:14384-14403	None:intergenic	30.0%
CACACAAAGTCAAATCAAAT+GGG	-	tig0035057:14778-14797	None:intergenic	30.0%
CACAAAAGAAAAAGAGACTT+TGG	+	tig0035057:14930-14949	Msa1454130:CDS	30.0%
CAAAAGAAAAAGAGACTTTG+GGG	+	tig0035057:14932-14951	Msa1454130:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0035057	gene	12613	18174	12613	ID=Msa1454130;Name=Msa1454130
tig0035057	mRNA	12613	18174	12613	ID=Msa1454130-mRNA-1;Parent=Msa1454130;Name=Msa1454130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=632\|1\|1\|1\|0.6\|0.66\|6\|198\|1124
tig0035057	exon	12613	12681	12613	ID=Msa1454130-mRNA-1:exon:19553;Parent=Msa1454130-mRNA-1
tig0035057	exon	12721	13272	12721	ID=Msa1454130-mRNA-1:exon:19554;Parent=Msa1454130-mRNA-1
tig0035057	exon	13847	15913	13847	ID=Msa1454130-mRNA-1:exon:19555;Parent=Msa1454130-mRNA-1
tig0035057	exon	16027	16843	16027	ID=Msa1454130-mRNA-1:exon:19556;Parent=Msa1454130-mRNA-1
tig0035057	exon	16995	17285	16995	ID=Msa1454130-mRNA-1:exon:19557;Parent=Msa1454130-mRNA-1
tig0035057	exon	17766	18174	17766	ID=Msa1454130-mRNA-1:exon:19558;Parent=Msa1454130-mRNA-1
tig0035057	five_prime_UTR	12613	12681	12613	ID=Msa1454130-mRNA-1:five_prime_utr;Parent=Msa1454130-mRNA-1
tig0035057	five_prime_UTR	12721	13272	12721	ID=Msa1454130-mRNA-1:five_prime_utr;Parent=Msa1454130-mRNA-1
tig0035057	five_prime_UTR	13847	13857	13847	ID=Msa1454130-mRNA-1:five_prime_utr;Parent=Msa1454130-mRNA-1
tig0035057	CDS	13858	15913	13858	ID=Msa1454130-mRNA-1:cds;Parent=Msa1454130-mRNA-1
tig0035057	CDS	16027	16843	16027	ID=Msa1454130-mRNA-1:cds;Parent=Msa1454130-mRNA-1
tig0035057	CDS	16995	17285	16995	ID=Msa1454130-mRNA-1:cds;Parent=Msa1454130-mRNA-1
tig0035057	CDS	17766	17976	17766	ID=Msa1454130-mRNA-1:cds;Parent=Msa1454130-mRNA-1
tig0035057	three_prime_UTR	17977	18174	17977	ID=Msa1454130-mRNA-1:three_prime_utr;Parent=Msa1454130-mRNA-1

Gene Sequence

>Msa1454130

ATGTCGACCACGAGGCCTAGCCAATCATCCAACAATTCAGGGAGATCAAGAAATAGTGCTAGGATTATTGCTCAGACAACAGTAGATGCAAAACTTCATGCAACTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCGAGTTCGGTGCGTGTCTCTGGTTCAGTTGATGGAGAGCATCAACCAAGGTCCAACAAAGTAACAACAGCTTACCTCAATACAATACAAAGAGGCAAGCAGATCCAGCCTTTTGGTTGCTTGCTAGCTTTAGACGAGAAAACGTGCAAGGTTATTGCATACAGTGAGAATGCACCGGAAATGCTGACCATGGTGAGTCATGCTGTCCCTAGTGTCGGTGACCACCCTGCCCTTGGCATTGGAACTGACATAAGAACTATCTTCACCGCACCGAGTGCTTCTGCGCTACAAAAGGCACTAGGATTTGCGGAGGTTTCGCTTCTTAACCCTATCCTTGTTCATTGCAAGACTTCTGGGAAGCCATTTTATGCGATTATTCACCGTGTTACCGGTAGTTTGATCATTGACTTTGAGCCAGTGAAGCCTTATGAAGTTCCCATGACTGCAGCAGGCGCATTACAGTCTTACAAACTTGCTGCTAAAGCAATTACAAGATTGCAATCTTTGCCTAGTGGCAGCATGGAAAGGCTTTGCGATACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCATGGGGAGGTGATTGCTGAGGTAACAAAGACAGGTCTAGAGCCATATCTGGGTTTGCACTATCCGGCCACAGATATTCCCCAGGCTGCGCGCTTTTTATTTATGAAGAACAAGGTCCGTATGATAGTTGATTGTCACGCAAAACATGTGAAGGTTCTTCAAGACGAAAAACTCCCATTTGATTTGACTTTGTGTGGTTCGACCTTAAGGGCCCCACATAGTTGCCATTTGCAGTATATGGCTAACATGGATTCAATTGCTTCCTTGGTTATGGCTGTAGTAGTCAATGACAGCGATGAAGATGGAGATAGTGCTGATGCAGTTCTCCCACAAAAGAAAAAGAGACTTTGGGGTTTGGTAGTTTGTCATAACACTACACCAAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAATTAGAATATCAGATTCTTGAGAAGAATATCCTGCGCACGCAGACACTGTTGTGCGATATGCTGATGCGAGATGCACCCTTAGGTATTGTATCACAAAGCCCTAATATAATGGATCTAGTGAAATGTGATGGGGCTGCACTCTTGTATAGAAACAAGTTATGGATATTAGGATCGACGCCGAGTGAACCTCAGATAAGAGAGATAGCTTTATGGATGTCCGAGTACCATACAGATTCGACTGGTTTGAGTACGGATAGCTTGTCTGATGCAGGGTTTCCAGGGGCTCTTAAACTTAATGATACTGTATGTGGAATGGCAGCTGTTAGAATAACTTCAAAAGACATAGTTTTCTGGTTTAGGTCGCACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAGCATGAACCTGGCGAACAGGATGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTCGAAGTTGTGAAGGCTAGGAGCATACCATGGAAAGACTTTGAAATGGATGCTATTCATTCGTTACAGTTAATACTGAGAAACGCATCCAAAGATACGGATATGATTGATTTAAACTCAAAGGCAATCAATACAAGACTAAATGATTTGAAGATCGAAGGGATGCAGGAATTGGAAGCAGTGACGAGTGAGATGGTTCGGTTAATTGAAACAGCAACAGTGCCTATTTTGGCAGTGGATGTTGATGGGATGGTCAATGGTTGGAATATCAAAATTTCCGAGTTGACAGGTCTTCCGGTTGGCGAAGCTATTGGAAAACATTTACTCACACTTGTTGAGGATTCTTCAACTGATATAGTCAAGAAGATGCTTAATCTGGCACTGCAGGGTCAAGAAGAGAAGAATGTTCAATTCGAGATCAAAACACACGGGTCTAAGACGGATTCCGGTCCTATTAGTTTGATAGTTAATGCGTGTGCAAGCAGGGATCTTCATGAAAATGTAGTGGGAGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTCATGGACAAATTCACCCGAATTGAAGGAGATTACAAGGCAATTGTACAGAACCCCAATCAATTAATCCCTCCTATATTCGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATGCAGCTATGATTAAGATAACTGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTCTAGGAGAGGTTTTCGGAACTCATATGTCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTCGTTAATTTCGGCATTGTACTTAATAAAGCGATGACTGGTTTGGAAACAGAAAAGGTTCCTTTTGGTTTTCTCTCTCGGAAGGGAAAGTATGTAGAGTGCCTACTTTCTGTGAGTAAGAAAATAGATGCGGAGGGCCTAGTTACCGGGGTCTTCTGTTTTTTGCAGCTAGCTAGCCCGGAGCTGCAACAAGCGTTACATATTCAACGCCTATCTGAACAAACCGCTCTCAAGAGACTGAAAGTATTAACTTATATGAGAAGGCAAATCAGGAATCCTTTGTCTGGGATTGTGTTTTCCAGTAAAATGTTGGAGAATACTGAGTTGGGAACCGAACAAAAACGAATTGTGAACACTAGTTCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTTGATGACTCGGATCTAGACAGCATCATTGATGGGTACTTGGATCTCGAGATGGCTGAATTCACTCTGCATGAGGTACTGGTGACCTCTCTTAGTCAAGTCATGAATAGGAGTAACACAAGGAGTATCCGAATAATGAATGATGTTGCGGAGCATATCGCGATGGAAACCTTGTATGGTGATAGTCTTAGACTTCAGCAGGTCTTGGCTGACTTCTTACTGATTTCCATCAATTCCACACCAAATGGAGGTCAGGTTGTTATAGCAGCCACTCTAACTAAAGAACAGTTAGGGAAATCTGTCCATCTTGTAAATTTGGAGCTCAGCATAACACATGGTGGAAATGGGGTGGCAGAAGCAGTGCTGAACCAGATGTTTGGAAATAATGGGCTAGAATCAGAAGAGGGTATTAGCCTACACATCAGTAGAAAGTTGTTAAAGCTTATGAACGGCGATGTTCGATATTTAAAAGAAGCTGGAAAATCATCCTTTATTCTATCTGTTGAACTTGCAGCAGCCCAAAAGTTGAGAGGTTAA

Protein sequence

>Msa1454130

MSTTRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGEHQPRSNKVTTAYLNTIQRGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEVTKTGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYRNKLWILGSTPSEPQIREIALWMSEYHTDSTGLSTDSLSDAGFPGALKLNDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNASKDTDMIDLNSKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNIKISELTGLPVGEAIGKHLLTLVEDSSTDIVKKMLNLALQGQEEKNVQFEIKTHGSKTDSGPISLIVNACASRDLHENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKITGWKREEVMDKMLLGEVFGTHMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFLSRKGKYVECLLSVSKKIDAEGLVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMRRQIRNPLSGIVFSSKMLENTELGTEQKRIVNTSSQCQRQLSKILDDSDLDSIIDGYLDLEMAEFTLHEVLVTSLSQVMNRSNTRSIRIMNDVAEHIAMETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAATLTKEQLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAQKLRG*